RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4780
(156 letters)
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 92.6 bits (230), Expect = 1e-22
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 17/130 (13%)
Query: 2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
G +Y+YV+VGE WAF+ GWN+ILE ++IG A+VAR+WS Y D L I
Sbjct: 93 GSAYLYSYVTVGELWAFITGWNLILE----------YVIGTAAVARSWSAYFDELLNKQI 142
Query: 62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDS------LCGG 115
F L+ D L +YPDF A + L A+LL AW + + L
Sbjct: 143 GQFRRTYFK-LNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFV 201
Query: 116 AISNFTIATV 125
I+ FT A V
Sbjct: 202 IIAGFTKADV 211
Score = 56.7 bits (137), Expect = 4e-10
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 82 DFLAFFVCLGYALLL----GAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP 137
+ AF G+ L+L G A+VAR+WS Y D L I F L+ D L +YP
Sbjct: 105 ELWAFIT--GWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLAEYP 161
Query: 138 DFLAFFVCLGYALLL 152
DF A + L A+LL
Sbjct: 162 DFFAVCLILLLAVLL 176
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 42.0 bits (99), Expect = 4e-05
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
G Y Y ++GE AF+IGW++ LE + + A+VA W GY+ G
Sbjct: 67 GSPYTYAYEAMGELTAFIIGWSLWLE----------YGVAVAAVAVGWGGYLQEFLPGVG 116
Query: 62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
+ + + P L + L Y L LGA +
Sbjct: 117 LDLPAVLTAKPGNGGVFNLPALL-IVLFLTYILYLGAKESGKV 158
>gnl|CDD|115904 pfam07279, DUF1442, Protein of unknown function (DUF1442). This
family consists of several hypothetical Arabidopsis
thaliana proteins of around 225 residues in length. The
function of this family is unknown.
Length = 218
Score = 31.0 bits (70), Expect = 0.19
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 5 VVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNF 64
+V T+ S G+ A +G N+ H G+H +C R+ S Y+ ++ + SN
Sbjct: 45 IVETW-SEGDPIATSVGLNVASRHTNGRH-IC-----IVPNERSQSAYLQAMREQSTSNL 97
Query: 65 TIATVGELHEDLLGKYP--DFL 84
VGE E + DFL
Sbjct: 98 PETIVGEELEHTMETLQGVDFL 119
>gnl|CDD|225708 COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 211
Score = 27.5 bits (61), Expect = 3.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 65 TIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGY 108
T + +L +G++P C LL AA + ++ Y
Sbjct: 4 TNLDLNDLDLLNIGEWPLAPRLVFC----LLAVAAVLGLGYAFY 43
>gnl|CDD|224470 COG1553, DsrE, Uncharacterized conserved protein involved in
intracellular sulfur reduction [Inorganic ion transport
and metabolism].
Length = 126
Score = 26.2 bits (58), Expect = 5.0
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 32 KHMVCKHMIGAASVARAWSGYVD------SLCGGAISNFTIATVGELHEDLL 77
+ V + A ++ R G + L I F ++ +GEL E L
Sbjct: 70 EQGVPVKLCVACALRR---GVTEEEAERLGLASNLIEGFELSGLGELAEATL 118
>gnl|CDD|224791 COG1879, RbsB, ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism].
Length = 322
Score = 26.7 bits (59), Expect = 5.1
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAI 117
++ E+ EDLL PD + + LGA +A +G +
Sbjct: 199 GDWDRDKALEVMEDLLAANPDIDGIY-AANDGMALGAIQALKA-AGRKGDVVVVGF 252
>gnl|CDD|221056 pfam11277, Med24_N, Mediator complex subunit 24 N-terminal. This
subunit of the Mediator complex appears to be conserved
only from insects to humans. It is essential for
correct retinal development in fish. Subunit
composition of the mediator contributes to the control
of differentiation in the vertebrate CNS as there are
divergent functions of the mediator subunits
Crsp34/Med27, Trap100/Med24, and Crsp150/Med14.
Length = 991
Score = 26.7 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 32 KHMVCKHMIGAASVARAWSGYVD 54
KH +C H++ A+V A S Y D
Sbjct: 65 KHSLCAHLVSHAAVLTAISKYDD 87
>gnl|CDD|183347 PRK11866, PRK11866, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 279
Score = 26.3 bits (58), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 90 LGYALLLGAASVARAWSGYVDSL 112
+ AL GA VAR +SG V L
Sbjct: 149 IALALAAGATFVARGFSGDVKHL 171
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 26.6 bits (59), Expect = 7.7
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 95 LLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLL 152
LLG A++ A+ G + L G IS + + E + + L ++C Y ++
Sbjct: 34 LLGPATLFTAFGGILLLLFLGIISYYVYKKIREKNIS-KVYWLLLLGLYICFSYFMIA 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.143 0.464
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,270,470
Number of extensions: 759568
Number of successful extensions: 998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 994
Number of HSP's successfully gapped: 31
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)