RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4780
(156 letters)
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 49.6 bits (119), Expect = 6e-08
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 28/101 (27%)
Query: 7 YTYVSVGE-FWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFT 65
+ + ++G+ + + + ++I A A+ ++GY L I+ F
Sbjct: 75 FIHKAIGDNIITGALSILLWMSYVIS----------IALFAKGFAGYFLPLINAPINTFN 124
Query: 66 IATVGELHEDLLGKYPDFLAFFVCLGYALLL--GAASVARA 104
I + + L G+ +V RA
Sbjct: 125 I---------------AITEIGIVAFFTALNFFGSKAVGRA 150
Score = 32.3 bits (74), Expect = 0.044
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 28/97 (28%)
Query: 58 GGAISNFTIATVGELHEDLLGKYPDFLAFFV--CLGYALLLGAASVARAWSGYVDSLCGG 115
G I+ F +G+ + + + L + ++ A A+ ++GY L
Sbjct: 70 AGPIA-FIHKAIGD----------NIITGALSILLWMSYVISIALFAKGFAGYFLPLINA 118
Query: 116 AISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLL 152
I+ F I + + L
Sbjct: 119 PINTFNI---------------AITEIGIVAFFTALN 140
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 34.8 bits (80), Expect = 0.007
Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 20/98 (20%)
Query: 6 VYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFT 65
+ ++G W F L+ IG + G + +
Sbjct: 77 AWVSNTLGPRWGFAAISFGYLQ----------IAIGFIPMLYFVLGALSYILKWP----- 121
Query: 66 IATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVAR 103
L+ED + K L L G AR
Sbjct: 122 -----ALNEDPITKTIAALIILWALALTQFGGTKYTAR 154
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 31.2 bits (71), Expect = 0.13
Identities = 9/64 (14%), Positives = 13/64 (20%), Gaps = 7/64 (10%)
Query: 6 VYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFT 65
Y G F + L IG I + + Y +
Sbjct: 75 AYARRCFGPFLGYQTNVLYWLACWIG-------NIAMVVIGVGYLSYFFPILKDPWVLTI 127
Query: 66 IATV 69
V
Sbjct: 128 TCVV 131
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 28.7 bits (63), Expect = 0.87
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 52 YVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG 97
Y+ L G ++ + L L ++ F G A LL
Sbjct: 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLD 54
Score = 28.7 bits (63), Expect = 0.87
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 108 YVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG 153
Y+ L G ++ + L L ++ F G A LL
Sbjct: 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLD 54
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein
complex, armadillo repeats, structural protein; 2.10A
{Mus musculus}
Length = 233
Score = 27.4 bits (60), Expect = 1.7
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 52 YVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGA 98
Y+ L G ++ + L L ++ F G A LL
Sbjct: 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDI 51
Score = 27.4 bits (60), Expect = 1.9
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 108 YVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG 153
Y+ L G ++ + L L ++ F G A LL
Sbjct: 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLD 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.6
Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 36/163 (22%)
Query: 3 ENVVYTYVSVGEFWAFVIGWNI--ILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGA 60
+ + + W VI ++ ++ + +V K S S Y++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKV--- 437
Query: 61 ISNFTIATVGELHEDLLGKY--------PDFLA------FFVCLGYALLLGAASVARAWS 106
+ LH ++ Y D + F+ +G+ L +
Sbjct: 438 ----KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMT 491
Query: 107 G----YVD-SLCGGAISNFTIA--TVGELHEDL--LGKYPDFL 140
++D I + + A G + L L Y ++
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
>2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA,
national project protein structural and functional
analyses; 1.65A {Pyrococcus horikoshii}
Length = 162
Score = 25.5 bits (56), Expect = 6.9
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 62 SNFTIATVGELHEDLLGKYPDF---LAF 86
NF+I TV +L LL P +A
Sbjct: 22 GNFSIFTVDDLARALLTAVPGIKFGIAM 49
Score = 25.5 bits (56), Expect = 6.9
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 118 SNFTIATVGELHEDLLGKYPDF---LAF 142
NF+I TV +L LL P +A
Sbjct: 22 GNFSIFTVDDLARALLTAVPGIKFGIAM 49
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 25.6 bits (56), Expect = 8.1
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 35 VCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCL-GYA 93
V H++ SG +DS AI+ A E E +P +F V L G
Sbjct: 219 VKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSP 278
Query: 94 LLLGAASVARAW 105
L A VA
Sbjct: 279 DLKAAQEVANHL 290
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.464
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,562,021
Number of extensions: 143643
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 16
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)