BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4781
         (83 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RJZ|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
           Pyrophosphatase From Pyrococcus Furiosus, The Northeast
           Structural Genomics Target Pfr23
 pdb|3RK0|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
           Pyrophosphatase (Pf0828) In Complex With Amp From
           Pyrococcus Furiosus, Northeast Structural Genomics
           Consortium Target Pfr23
 pdb|3RK1|A Chain A, 'x-Ray Crystal Structure Of The Putative N-Type Atp
           Pyrophosphatase (Pf0828) In Complex With Atp From
           Pyrococcus Furiosus, Northeast Structural Genomics
           Consortium Target Pfr23
 pdb|3RK1|B Chain B, 'x-Ray Crystal Structure Of The Putative N-Type Atp
           Pyrophosphatase (Pf0828) In Complex With Atp From
           Pyrococcus Furiosus, Northeast Structural Genomics
           Consortium Target Pfr23
          Length = 237

 Score = 30.8 bits (68), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 9   INSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLP-YGISGVVAGAATCFYAYVGFD 67
           IN+ LT      +GI +V GF  G  +  + +    L    I G+VAGA    Y     +
Sbjct: 50  INANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALASKYQRKRIE 109

Query: 68  KCWKCL 73
           K  K L
Sbjct: 110 KVAKEL 115


>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
          Bacteriophage Phikz
 pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
          Bacteriophage Phikz
          Length = 400

 Score = 28.5 bits (62), Expect = 1.00,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)

Query: 49 ISGVVAGAATCFYAYVGFDKCWKCLI 74
          I GV AG    F+AY GF+  W C I
Sbjct: 37 IQGVTAG----FHAYAGFNSWWDCTI 58


>pdb|3INA|A Chain A, Crystal Structure Of Heparin Lyase I H151a Mutant
           Complexed With A Dodecasaccharide Heparin
          Length = 378

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 8/41 (19%)

Query: 32  GRLDNWINEGGGFLP--YGISGVVAGAATCFYAYVGFDKCW 70
           G+L+ W+ E GG+ P  +G SG +      FY     D+ W
Sbjct: 214 GKLNGWLVEQGGYPPLAFGFSGGL------FYIKANSDRKW 248


>pdb|3IMN|A Chain A, Crystal Structure Of Heparin Lyase I From Bacteroides
           Thetaiotaomicron
 pdb|3IN9|A Chain A, Crystal Structure Of Heparin Lyase I Complexed With
           Disaccharide Heparin
          Length = 378

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 8/41 (19%)

Query: 32  GRLDNWINEGGGFLP--YGISGVVAGAATCFYAYVGFDKCW 70
           G+L+ W+ E GG+ P  +G SG +      FY     D+ W
Sbjct: 214 GKLNGWLVEQGGYPPLAFGFSGGL------FYIKANSDRKW 248


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.148    0.487 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,546,022
Number of Sequences: 62578
Number of extensions: 95818
Number of successful extensions: 344
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 6
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)