Query psy4781
Match_columns 83
No_of_seqs 133 out of 1094
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:32:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 99.6 1.8E-15 3.8E-20 112.1 8.2 80 1-80 178-261 (557)
2 PRK10644 arginine:agmatin anti 99.4 8.9E-13 1.9E-17 94.8 8.6 82 1-82 142-224 (445)
3 PRK11357 frlA putative fructos 99.4 1.4E-12 2.9E-17 93.8 9.0 82 1-82 144-228 (445)
4 COG1113 AnsP Gamma-aminobutyra 99.4 1.2E-12 2.6E-17 95.0 8.0 78 2-80 145-233 (462)
5 PRK10197 gamma-aminobutyrate t 99.4 1.9E-12 4.1E-17 93.4 8.6 80 1-80 123-211 (446)
6 PRK10435 cadB lysine/cadaverin 99.4 1.8E-12 3.9E-17 93.1 8.3 82 1-82 138-220 (435)
7 PRK10655 potE putrescine trans 99.4 2.3E-12 4.9E-17 92.4 8.6 79 1-82 140-222 (438)
8 PRK11049 D-alanine/D-serine/gl 99.4 1.9E-12 4.2E-17 93.8 8.3 80 1-80 151-241 (469)
9 TIGR00909 2A0306 amino acid tr 99.4 2.4E-12 5.2E-17 91.8 8.1 76 1-80 150-225 (429)
10 PRK10746 putative transport pr 99.4 3.5E-12 7.5E-17 92.5 8.4 79 1-80 141-230 (461)
11 TIGR00908 2A0305 ethanolamine 99.3 3.6E-12 7.8E-17 91.4 7.6 80 1-80 138-221 (442)
12 PRK10249 phenylalanine transpo 99.3 4.8E-12 1E-16 91.6 8.2 80 1-80 152-239 (458)
13 PRK15049 L-asparagine permease 99.3 6.3E-12 1.4E-16 92.1 8.2 80 1-80 161-250 (499)
14 PRK10836 lysine transporter; P 99.3 9.5E-12 2.1E-16 90.6 8.1 79 1-80 147-235 (489)
15 TIGR01773 GABAperm gamma-amino 99.3 1E-11 2.3E-16 89.3 7.9 80 1-80 143-231 (452)
16 PRK11021 putative transporter; 99.3 1.5E-11 3.2E-16 87.7 8.5 78 1-82 132-210 (410)
17 KOG1286|consensus 99.3 2.2E-12 4.7E-17 96.0 4.1 81 2-82 179-265 (554)
18 PRK11387 S-methylmethionine tr 99.3 1.8E-11 3.9E-16 88.7 8.7 80 1-80 146-236 (471)
19 PRK10580 proY putative proline 99.3 2.3E-11 5.1E-16 87.8 8.5 80 1-80 140-229 (457)
20 PRK10238 aromatic amino acid t 99.3 2.5E-11 5.5E-16 87.8 8.5 80 1-80 143-230 (456)
21 TIGR00911 2A0308 L-type amino 99.2 4E-11 8.6E-16 87.4 8.5 80 1-80 182-265 (501)
22 TIGR03810 arg_ornith_anti argi 99.2 3.9E-11 8.5E-16 86.9 8.2 82 1-82 140-227 (468)
23 TIGR00913 2A0310 amino acid pe 99.2 5.2E-11 1.1E-15 86.2 8.4 79 1-80 135-227 (478)
24 TIGR00905 2A0302 transporter, 99.2 9.1E-11 2E-15 85.1 9.0 82 1-82 146-231 (473)
25 TIGR03428 ureacarb_perm permea 99.2 1.3E-10 2.7E-15 84.4 8.0 80 1-80 161-243 (475)
26 PF00324 AA_permease: Amino ac 99.2 2.1E-11 4.7E-16 88.2 3.2 82 1-82 134-233 (478)
27 COG0531 PotE Amino acid transp 99.1 3.6E-10 7.9E-15 80.5 8.6 79 1-80 151-231 (466)
28 TIGR00907 2A0304 amino acid pe 99.1 2.4E-10 5.1E-15 82.9 6.3 79 1-80 160-247 (482)
29 PF13520 AA_permease_2: Amino 99.1 2.5E-10 5.3E-15 81.1 6.1 78 1-78 135-216 (426)
30 KOG1287|consensus 99.0 1.3E-09 2.8E-14 80.0 6.8 79 1-80 152-234 (479)
31 TIGR00930 2a30 K-Cl cotranspor 99.0 1.7E-09 3.7E-14 84.7 6.5 82 1-82 220-313 (953)
32 TIGR03813 put_Glu_GABA_T putat 98.9 4.1E-09 9E-14 76.5 7.3 79 1-80 140-224 (474)
33 PRK15238 inner membrane transp 98.8 2.6E-08 5.7E-13 72.8 8.5 80 1-80 152-241 (496)
34 TIGR00910 2A0307_GadC glutamat 98.7 7.1E-08 1.5E-12 71.0 7.8 80 1-80 140-224 (507)
35 COG0833 LysP Amino acid transp 98.7 1.6E-08 3.4E-13 75.1 3.0 81 1-82 177-267 (541)
36 TIGR00912 2A0309 spore germina 98.5 3.2E-07 6.9E-12 64.3 6.3 77 1-81 132-210 (359)
37 TIGR00837 araaP aromatic amino 98.4 1.1E-06 2.4E-11 62.0 6.5 77 1-80 131-208 (381)
38 TIGR00814 stp serine transport 97.7 0.00016 3.5E-09 52.3 6.5 75 1-77 139-217 (397)
39 TIGR00796 livcs branched-chain 97.3 0.0014 3.1E-08 47.2 7.1 77 1-80 128-212 (378)
40 PF03845 Spore_permease: Spore 96.6 0.018 3.8E-07 40.1 7.7 76 1-80 130-205 (320)
41 KOG1289|consensus 96.6 0.0043 9.4E-08 46.7 4.8 77 3-80 196-282 (550)
42 PF03222 Trp_Tyr_perm: Tryptop 95.2 0.15 3.2E-06 37.0 7.5 74 2-77 138-211 (394)
43 COG0814 SdaC Amino acid permea 94.3 0.13 2.9E-06 37.4 5.4 77 2-80 146-223 (415)
44 PRK10483 tryptophan permease; 88.8 1.6 3.5E-05 32.1 5.7 74 1-75 144-217 (414)
45 PRK09664 tryptophan permease T 87.2 2.4 5.3E-05 31.2 5.8 71 2-72 144-215 (415)
46 PRK15132 tyrosine transporter 86.3 2.9 6.3E-05 30.6 5.8 70 1-75 137-206 (403)
47 PLN03074 auxin influx permease 83.7 11 0.00024 28.1 7.9 34 48-81 231-264 (473)
48 PRK13629 threonine/serine tran 79.9 6.7 0.00015 29.3 5.6 73 1-73 155-232 (443)
49 PTZ00206 amino acid transporte 65.9 44 0.00096 24.7 7.0 30 51-80 257-286 (467)
50 KOG1304|consensus 62.2 26 0.00056 26.4 5.2 33 48-80 239-271 (449)
51 PHA02764 hypothetical protein; 61.2 40 0.00087 24.7 5.8 30 51-80 182-211 (399)
52 PF01490 Aa_trans: Transmembra 56.7 6.9 0.00015 27.5 1.4 34 48-81 190-223 (409)
53 PF07423 DUF1510: Protein of u 53.7 21 0.00047 24.2 3.3 26 7-32 10-35 (217)
54 PRK02935 hypothetical protein; 43.8 54 0.0012 20.0 3.6 25 2-26 2-26 (110)
55 PF04911 ATP-synt_J: ATP synth 41.1 54 0.0012 17.4 3.0 29 51-79 12-40 (54)
56 KOG2083|consensus 34.6 28 0.00061 27.3 1.8 32 1-32 165-196 (643)
57 PHA02974 putative IMV membrane 33.1 60 0.0013 18.7 2.5 22 4-25 41-62 (81)
58 PHA03062 putative IMV membrane 32.8 74 0.0016 18.2 2.9 21 5-25 42-62 (78)
59 PF13706 PepSY_TM_3: PepSY-ass 32.7 42 0.00091 16.0 1.7 20 47-66 8-27 (37)
60 PHA03055 Hypothetical protein; 31.0 80 0.0017 18.1 2.8 20 6-25 42-61 (79)
61 PF10717 ODV-E18: Occlusion-de 30.3 1.1E+02 0.0023 17.8 3.3 19 11-29 26-44 (85)
62 PRK11017 codB cytosine permeas 29.7 2.2E+02 0.0047 20.6 5.9 75 2-80 138-214 (404)
63 PF09889 DUF2116: Uncharacteri 27.1 1.1E+02 0.0024 16.4 3.9 21 6-26 35-55 (59)
64 PF03647 Tmemb_14: Transmembra 26.9 81 0.0017 18.4 2.5 22 42-63 75-96 (96)
65 TIGR02358 thia_cytX probable h 26.8 2.5E+02 0.0053 20.2 6.0 30 2-31 130-159 (386)
66 PF10415 FumaraseC_C: Fumarase 26.6 42 0.0009 17.6 1.1 17 61-77 6-22 (55)
67 PF11395 DUF2873: Protein of u 25.2 1E+02 0.0022 15.2 2.8 18 13-30 14-31 (43)
68 PF04713 Pox_I5: Poxvirus prot 25.1 1.1E+02 0.0024 17.5 2.7 21 5-25 41-61 (77)
69 PF13179 DUF4006: Family of un 24.7 1.4E+02 0.003 16.6 3.6 34 47-80 11-46 (66)
70 COG3781 Predicted membrane pro 24.5 69 0.0015 22.8 2.1 20 58-80 246-265 (306)
71 PF11023 DUF2614: Protein of u 24.4 1.2E+02 0.0026 18.6 2.9 23 3-25 2-24 (114)
72 PHA02702 ORF033 IMV membrane p 24.0 77 0.0017 18.1 1.9 20 6-25 39-58 (78)
73 PRK12505 putative monovalent c 23.7 2.1E+02 0.0046 18.4 5.7 49 9-63 16-64 (159)
74 COG1457 CodB Purine-cytosine p 22.8 3.4E+02 0.0074 20.5 7.2 63 1-66 147-209 (442)
75 PF04202 Mfp-3: Foot protein 3 21.4 91 0.002 17.4 1.8 16 18-33 6-21 (71)
76 PF08999 SP_C-Propep: Surfacta 20.8 1.9E+02 0.0041 16.8 3.5 22 10-31 34-55 (93)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.62 E-value=1.8e-15 Score=112.08 Aligned_cols=80 Identities=41% Similarity=0.806 Sum_probs=71.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc----CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN----EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~----~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~ 76 (83)
+|+|.++|+|++++.+|+++++++++.|+.+.+.+|+.. ..+++.|+|+.+++.++..++|+|.|||.+++++||+
T Consensus 178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~ 257 (557)
T TIGR00906 178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV 257 (557)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc
Confidence 589999999999999999999999999998877777652 1235788899999999999999999999999999999
Q ss_pred cCCC
Q psy4781 77 GVRT 80 (83)
Q Consensus 77 k~~~ 80 (83)
|||.
T Consensus 258 knP~ 261 (557)
T TIGR00906 258 KNPQ 261 (557)
T ss_pred cCcc
Confidence 9998
No 2
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.43 E-value=8.9e-13 Score=94.78 Aligned_cols=82 Identities=10% Similarity=0.137 Sum_probs=64.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
+|+|..+|+|++++.+|+++++++++.++...+.+++.+..+.....++.++..++..++|+|.|||.+++++||+|||.
T Consensus 142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (445)
T PRK10644 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence 58999999999999999999999988887766554443311001112456788888899999999999999999999997
Q ss_pred -CC
Q psy4781 81 -TI 82 (83)
Q Consensus 81 -~~ 82 (83)
++
T Consensus 222 r~i 224 (445)
T PRK10644 222 RNV 224 (445)
T ss_pred cch
Confidence 43
No 3
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.42 E-value=1.4e-12 Score=93.76 Aligned_cols=82 Identities=21% Similarity=0.354 Sum_probs=64.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-CccCcC-HHHHHHHHHHHHHhhccHHHHHhhhhhhcC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGG-GFLPYG-ISGVVAGAATCFYAYVGFDKCWKCLIRIGV 78 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~-~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~aeE~k~ 78 (83)
+|+|.++|+|++++++|++.++++++.|+...+.+++.+... .....| +.+++.++...+|+|.|||.+++.+||+||
T Consensus 144 ~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 223 (445)
T PRK11357 144 RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKN 223 (445)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcC
Confidence 589999999999999999999888888886555555532110 011122 567888999999999999999999999999
Q ss_pred CC-CC
Q psy4781 79 RT-TI 82 (83)
Q Consensus 79 ~~-~~ 82 (83)
|. ++
T Consensus 224 P~r~i 228 (445)
T PRK11357 224 PGKTM 228 (445)
T ss_pred ccccc
Confidence 97 43
No 4
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.40 E-value=1.2e-12 Score=95.03 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=69.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-----------cccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-----------DNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCW 70 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-----------~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~ 70 (83)
++|..++++.++..+|+++++.+|++|....-. +|+. .|++|+|+|+.|++.+...++|+|.|-|.+.
T Consensus 145 sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~-~hGGffP~G~~g~~~~~~~v~Faf~GiElvG 223 (462)
T COG1113 145 SVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLW-DHGGFFPNGFLGFLSALQIVMFAFGGIELVG 223 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccc-cCCCcCCCchHHHHHHHHHHHHHHhhHHHHH
Confidence 589999999999999999999999999765321 1222 3789999999999999999999999999999
Q ss_pred hhhhhhcCCC
Q psy4781 71 KCLIRIGVRT 80 (83)
Q Consensus 71 ~~aeE~k~~~ 80 (83)
..|+|.|+|.
T Consensus 224 itA~Et~dP~ 233 (462)
T COG1113 224 ITAAEAKDPE 233 (462)
T ss_pred HHHHhhcChh
Confidence 9999999998
No 5
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.39 E-value=1.9e-12 Score=93.41 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-------ccccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-------DNWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWK 71 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-------~~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~ 71 (83)
+|+|..+++|++++++|++.++.+++.|+..... .++.+ ..+++.|+|+.++..++..++|+|.|||.++.
T Consensus 123 ~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~ 202 (446)
T PRK10197 123 LSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTI 202 (446)
T ss_pred HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4899999999999999999999998888764321 11111 12346788999999999999999999999999
Q ss_pred hhhhhcCCC
Q psy4781 72 CLIRIGVRT 80 (83)
Q Consensus 72 ~aeE~k~~~ 80 (83)
.+||+|||.
T Consensus 203 ~a~E~knP~ 211 (446)
T PRK10197 203 AAAESDTPE 211 (446)
T ss_pred HHHHhcChh
Confidence 999999997
No 6
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.39 E-value=1.8e-12 Score=93.12 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=64.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
+|+|.++++|++.+++++++++.+++.|+.+.+.+++.+......+.+..+++.++..++|+|.|||.++..+||+|||.
T Consensus 138 ~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~ 217 (435)
T PRK10435 138 LGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK 217 (435)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc
Confidence 48999999999999999988887777777665544322111112234678899999999999999999999999999997
Q ss_pred -CC
Q psy4781 81 -TI 82 (83)
Q Consensus 81 -~~ 82 (83)
++
T Consensus 218 r~i 220 (435)
T PRK10435 218 RTV 220 (435)
T ss_pred ccc
Confidence 54
No 7
>PRK10655 potE putrescine transporter; Provisional
Probab=99.39 E-value=2.3e-12 Score=92.36 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=64.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcC---HHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYG---ISGVVAGAATCFYAYVGFDKCWKCLIRIG 77 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g---~~g~~~a~~~~~fay~G~~~v~~~aeE~k 77 (83)
+|+|.++|+|++.+..+++.++++++.++.+.+.+++.+. +.|.+ +.++..++..++|+|.|||.+++++||+|
T Consensus 140 ~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k 216 (438)
T PRK10655 140 GGARITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAA---WNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVE 216 (438)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCC---cCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Confidence 4899999999999999999999888888776666555431 22322 36788889999999999999999999999
Q ss_pred CCC-CC
Q psy4781 78 VRT-TI 82 (83)
Q Consensus 78 ~~~-~~ 82 (83)
||. ++
T Consensus 217 ~P~r~i 222 (438)
T PRK10655 217 NPERNV 222 (438)
T ss_pred Cccccc
Confidence 998 54
No 8
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.39 E-value=1.9e-12 Score=93.81 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-----c----cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-----D----NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKC 69 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-----~----~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v 69 (83)
+|+|..+|+|++++.+|++.++.+++.|+..... + ++.+ ..+++.|+|+.+++.++...+|+|.|||.+
T Consensus 151 ~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~ 230 (469)
T PRK11049 151 ATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELV 230 (469)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHH
Confidence 4899999999999999999999999998864311 1 1211 123456788889999999999999999999
Q ss_pred HhhhhhhcCCC
Q psy4781 70 WKCLIRIGVRT 80 (83)
Q Consensus 70 ~~~aeE~k~~~ 80 (83)
++++||+|||.
T Consensus 231 ~~~a~E~knP~ 241 (469)
T PRK11049 231 GTTAAETKDPE 241 (469)
T ss_pred HHHHHHhcCHh
Confidence 99999999997
No 9
>TIGR00909 2A0306 amino acid transporter.
Probab=99.38 E-value=2.4e-12 Score=91.76 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=67.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
+|+|.++|+|++++.+|++.++++++.++.+.+.+++.+ +.|.++.++..++...+|+|.|||.+.+.+||+|||+
T Consensus 150 ~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~ 225 (429)
T TIGR00909 150 LGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTP----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE 225 (429)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc
Confidence 489999999999999999999888888887766666665 5566788899999999999999999999999999996
No 10
>PRK10746 putative transport protein YifK; Provisional
Probab=99.36 E-value=3.5e-12 Score=92.52 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=64.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--c---------ccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYG--R---------LDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKC 69 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~--~---------~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v 69 (83)
+|+|..+++|.+++.+|++.++.+++.++... . .+|+.+ ++++.|+|+.|+..++..++|+|.|+|.+
T Consensus 141 ~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~g~~g~~~~~~~~~faf~G~e~v 219 (461)
T PRK10746 141 AAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTE-HGGFFAGGWKGFLTALCIVVASYQGVELI 219 (461)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccC-CCCcCcccHHHHHHHHHHHHHHhcCHHHH
Confidence 48999999999999999999988888776321 1 112222 33466788999999999999999999999
Q ss_pred HhhhhhhcCCC
Q psy4781 70 WKCLIRIGVRT 80 (83)
Q Consensus 70 ~~~aeE~k~~~ 80 (83)
+..+||+|||.
T Consensus 220 ~~~a~E~knP~ 230 (461)
T PRK10746 220 GITAGEAKNPQ 230 (461)
T ss_pred HHHHHHhcChh
Confidence 99999999997
No 11
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.35 E-value=3.6e-12 Score=91.41 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc----CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN----EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~----~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~ 76 (83)
+|+|.++|+|++++++|+++++++++.+..+.+..++.+ ..+++.|.++.+++.+....+|+|.|||.+++++||+
T Consensus 138 ~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~ 217 (442)
T TIGR00908 138 LGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET 217 (442)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999888777665544443333321 1233556778889999999999999999999999999
Q ss_pred cCCC
Q psy4781 77 GVRT 80 (83)
Q Consensus 77 k~~~ 80 (83)
|||.
T Consensus 218 k~P~ 221 (442)
T TIGR00908 218 KNPK 221 (442)
T ss_pred cCcc
Confidence 9997
No 12
>PRK10249 phenylalanine transporter; Provisional
Probab=99.34 E-value=4.8e-12 Score=91.58 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=64.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc---cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR---LD---NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKC 72 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~---~~---~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~ 72 (83)
+|+|.++|+|.+++.+|++.++.+++.++.... .+ ++.+ .++++.|+|+.+++.+....+|+|.|||.++.+
T Consensus 152 ~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~ 231 (458)
T PRK10249 152 VNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGIT 231 (458)
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 589999999999999999998888887765321 10 1111 123456788999999999999999999999999
Q ss_pred hhhhcCCC
Q psy4781 73 LIRIGVRT 80 (83)
Q Consensus 73 aeE~k~~~ 80 (83)
+||+|||.
T Consensus 232 a~E~~~P~ 239 (458)
T PRK10249 232 AAEARDPE 239 (458)
T ss_pred HHHhcCHh
Confidence 99999997
No 13
>PRK15049 L-asparagine permease; Provisional
Probab=99.33 E-value=6.3e-12 Score=92.07 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-------ccc--cCCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-D-------NWI--NEGGGFLPYGISGVVAGAATCFYAYVGFDKCW 70 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-~-------~~~--~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~ 70 (83)
+|+|.++|+|++++++|++.++++++.++..... . ++. ..++++.|+|+.+++.+...++|+|.|||.++
T Consensus 161 ~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~ 240 (499)
T PRK15049 161 IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVG 240 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 4899999999999999999999988888654211 1 011 11345678888888888889999999999999
Q ss_pred hhhhhhcCCC
Q psy4781 71 KCLIRIGVRT 80 (83)
Q Consensus 71 ~~aeE~k~~~ 80 (83)
.++||+|||.
T Consensus 241 ~~aeE~knP~ 250 (499)
T PRK15049 241 TAAGECKDPQ 250 (499)
T ss_pred HHHHHhcChh
Confidence 9999999997
No 14
>PRK10836 lysine transporter; Provisional
Probab=99.31 E-value=9.5e-12 Score=90.62 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=61.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----------ccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR----------LDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCW 70 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~----------~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~ 70 (83)
+|+|..+++|++++.+|++.++++++.++.... .+++.+ +++..+.|+.++++++...+|+|.|||.++
T Consensus 147 ~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~faf~G~e~~~ 225 (489)
T PRK10836 147 ISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTI-GDAPFAGGFAAMIGVAMIVGFSFQGTELIG 225 (489)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCC-CCCCCcccHHHHHHHHHHHHHHHccHHHHH
Confidence 478999999999999999999888877765421 112321 111234577888888888899999999999
Q ss_pred hhhhhhcCCC
Q psy4781 71 KCLIRIGVRT 80 (83)
Q Consensus 71 ~~aeE~k~~~ 80 (83)
.++||+|||.
T Consensus 226 ~~a~E~knP~ 235 (489)
T PRK10836 226 IAAGESEDPA 235 (489)
T ss_pred HHHHHhcCHH
Confidence 9999999996
No 15
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.30 E-value=1e-11 Score=89.34 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=63.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc----cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR---LD----NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWK 71 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~---~~----~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~ 71 (83)
+|+|..+++|++++++|++.++.+++.++.... +. ++.+ .++++.|+|+.+++.++...+|+|.|||.++.
T Consensus 143 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~ 222 (452)
T TIGR01773 143 YSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTI 222 (452)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhH
Confidence 488999999999999999999888887764211 11 1111 12345677888999999999999999999999
Q ss_pred hhhhhcCCC
Q psy4781 72 CLIRIGVRT 80 (83)
Q Consensus 72 ~aeE~k~~~ 80 (83)
++||+|||.
T Consensus 223 ~a~E~k~P~ 231 (452)
T TIGR01773 223 AAAESSNPI 231 (452)
T ss_pred HHHhhcChh
Confidence 999999997
No 16
>PRK11021 putative transporter; Provisional
Probab=99.30 E-value=1.5e-11 Score=87.65 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=56.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
+|+|.++|+|++++++++..++++...+ ..+..++.. .++.+.++.++..++...+|+|.|||.+++++||+|||.
T Consensus 132 ~Gv~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 207 (410)
T PRK11021 132 RGASSSANLQTVIALLIVALVVAIWWAG--DIKPADIPF--PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE 207 (410)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchhcCCC--CCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc
Confidence 5899999999999977665544332222 122222211 113345788999999999999999999999999999997
Q ss_pred -CC
Q psy4781 81 -TI 82 (83)
Q Consensus 81 -~~ 82 (83)
++
T Consensus 208 k~i 210 (410)
T PRK11021 208 RDF 210 (410)
T ss_pred ccc
Confidence 44
No 17
>KOG1286|consensus
Probab=99.30 E-value=2.2e-12 Score=95.97 Aligned_cols=81 Identities=32% Similarity=0.602 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc-----CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN-----EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~-----~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~ 76 (83)
|+|.+..++++++++.++++.+++..|....|..+|.. +++.|.|+|+.|+++++..++|+|.|+|.++..+||+
T Consensus 179 e~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~ 258 (554)
T KOG1286|consen 179 EVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA 258 (554)
T ss_pred ceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc
Confidence 57788999999999999999999999998877555532 2567999999999999999999999999999999999
Q ss_pred cCCC-CC
Q psy4781 77 GVRT-TI 82 (83)
Q Consensus 77 k~~~-~~ 82 (83)
|||+ +|
T Consensus 259 kNP~k~I 265 (554)
T KOG1286|consen 259 KNPRKAI 265 (554)
T ss_pred cCCcccc
Confidence 9998 54
No 18
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.29 E-value=1.8e-11 Score=88.74 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=62.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc------ccc----ccc-CCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR------LDN----WIN-EGGGFLPYGISGVVAGAATCFYAYVGFDKC 69 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~------~~~----~~~-~~~~~~p~g~~g~~~a~~~~~fay~G~~~v 69 (83)
+|+|..+|+|++++.+|++.++++++.|+.... ..+ +.+ ...++.|+|..+++.++..++|+|.|||.+
T Consensus 146 ~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~ 225 (471)
T PRK11387 146 VSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELI 225 (471)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHH
Confidence 489999999999999999999988888765321 011 110 112344667778899999999999999999
Q ss_pred HhhhhhhcCCC
Q psy4781 70 WKCLIRIGVRT 80 (83)
Q Consensus 70 ~~~aeE~k~~~ 80 (83)
++.+||+|||.
T Consensus 226 ~~~a~E~knP~ 236 (471)
T PRK11387 226 GIAAGETENPA 236 (471)
T ss_pred HHHHHHhcChh
Confidence 99999999997
No 19
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.28 E-value=2.3e-11 Score=87.80 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=63.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--c---c---cccccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYY--G---R---LDNWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCW 70 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~--~---~---~~~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~ 70 (83)
+|+|..+|+|++++.+|++.++++++.|+.. . + ..+..+ .++++.|+|+.+++.+...++|+|.|||.++
T Consensus 140 ~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~ 219 (457)
T PRK10580 140 MSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIG 219 (457)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHH
Confidence 5899999999999999999998887776421 1 1 111111 1234567888899999999999999999999
Q ss_pred hhhhhhcCCC
Q psy4781 71 KCLIRIGVRT 80 (83)
Q Consensus 71 ~~aeE~k~~~ 80 (83)
..+||+|||.
T Consensus 220 ~~a~E~knP~ 229 (457)
T PRK10580 220 ITAGEAKDPE 229 (457)
T ss_pred HHHHHhcChh
Confidence 9999999997
No 20
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.27 E-value=2.5e-11 Score=87.81 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=62.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc---cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR---LD---NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKC 72 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~---~~---~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~ 72 (83)
+|+|..+|+|++++.+|++.+++++++++.... .+ .+.+ .++++.|+|+.+++.++...+|+|.|||.++..
T Consensus 143 ~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~ 222 (456)
T PRK10238 143 TNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGIT 222 (456)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 489999999999999999998888776654311 11 1111 123456788889999999999999999999999
Q ss_pred hhhhcCCC
Q psy4781 73 LIRIGVRT 80 (83)
Q Consensus 73 aeE~k~~~ 80 (83)
+||+|||.
T Consensus 223 aeE~knP~ 230 (456)
T PRK10238 223 AAEADNPE 230 (456)
T ss_pred HHhhcChh
Confidence 99999997
No 21
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.25 E-value=4e-11 Score=87.44 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=61.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc-C-CCCcc--CcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN-E-GGGFL--PYGISGVVAGAATCFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~-~-~~~~~--p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~ 76 (83)
+|+|.++|+|++++++|+++++++++.++.....++.++ . ...+. +.+..++..+...++|+|.|||.+++++||+
T Consensus 182 ~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~ 261 (501)
T TIGR00911 182 LSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV 261 (501)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh
Confidence 589999999999999999999998888876543222111 0 00111 1346688889999999999999999999999
Q ss_pred cCCC
Q psy4781 77 GVRT 80 (83)
Q Consensus 77 k~~~ 80 (83)
|||.
T Consensus 262 knP~ 265 (501)
T TIGR00911 262 KNPY 265 (501)
T ss_pred cCch
Confidence 9997
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.24 E-value=3.9e-11 Score=86.92 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccC-CC----Cc-cCcCHHHHHHHHHHHHHhhccHHHHHhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINE-GG----GF-LPYGISGVVAGAATCFYAYVGFDKCWKCLI 74 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~-~~----~~-~p~g~~g~~~a~~~~~fay~G~~~v~~~ae 74 (83)
+|+|.++|+|++++++|+++++++++.++...+.+++.+. .+ ++ ....+.++..++..++|+|.|||.++.++|
T Consensus 140 ~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 219 (468)
T TIGR03810 140 RGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSA 219 (468)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHh
Confidence 5899999999999999999999999988776554433221 00 11 112355677888899999999999999999
Q ss_pred hhcCCCCC
Q psy4781 75 RIGVRTTI 82 (83)
Q Consensus 75 E~k~~~~~ 82 (83)
|+||+.++
T Consensus 220 e~k~~k~i 227 (468)
T TIGR03810 220 RAEKRSDV 227 (468)
T ss_pred hccCcccc
Confidence 99986654
No 23
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.23 E-value=5.2e-11 Score=86.17 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----------ccccCCCCccCc----CHHHHHHHHHHHHHhhccH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLD----------NWINEGGGFLPY----GISGVVAGAATCFYAYVGF 66 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~----------~~~~~~~~~~p~----g~~g~~~a~~~~~fay~G~ 66 (83)
+|+|.++|+|++++.+|++.++.+++.++.....+ ++.+ ++++.|. ++.++..+....+|+|.||
T Consensus 135 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~af~G~ 213 (478)
T TIGR00913 135 FGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHD-PGAFAGGTIGGRFKGVCSVFVTAAFSFGGT 213 (478)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCC-CCCCCCCCccchHHHHHHHHHHHHhhhccH
Confidence 58999999999999999999998888776543211 1111 1223332 2678889999999999999
Q ss_pred HHHHhhhhhhcCCC
Q psy4781 67 DKCWKCLIRIGVRT 80 (83)
Q Consensus 67 ~~v~~~aeE~k~~~ 80 (83)
|.+++++||+|||.
T Consensus 214 e~~~~~a~E~knP~ 227 (478)
T TIGR00913 214 ELVALTAGEAANPR 227 (478)
T ss_pred HHHHHHHHhhcChh
Confidence 99999999999997
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.22 E-value=9.1e-11 Score=85.13 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=62.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccC-CCCcc---CcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINE-GGGFL---PYGISGVVAGAATCFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~-~~~~~---p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~ 76 (83)
+|+|.++|+|++++.+|++.++++++.++...+.+++... ..... +.++.++..++...+|+|.|||.+++++||+
T Consensus 146 ~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 225 (473)
T TIGR00905 146 RGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA 225 (473)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5899999999999999999999999888765544433211 01111 2245678889999999999999999999999
Q ss_pred cCCCCC
Q psy4781 77 GVRTTI 82 (83)
Q Consensus 77 k~~~~~ 82 (83)
||+.++
T Consensus 226 k~~r~i 231 (473)
T TIGR00905 226 KNKSDV 231 (473)
T ss_pred hccccc
Confidence 993243
No 25
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.18 E-value=1.3e-10 Score=84.44 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=57.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc---cccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDN---WINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIG 77 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~---~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k 77 (83)
+|+|.++|+|++.+++|++.++++++.++.+.+.++ +.....+..+....+++.+....+|+|.|||.+++++||+|
T Consensus 161 ~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k 240 (475)
T TIGR03428 161 IGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK 240 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence 489999999999999999888888777665443211 11110111222234566777888999999999999999999
Q ss_pred CCC
Q psy4781 78 VRT 80 (83)
Q Consensus 78 ~~~ 80 (83)
||.
T Consensus 241 nP~ 243 (475)
T TIGR03428 241 NPR 243 (475)
T ss_pred Ccc
Confidence 997
No 26
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.15 E-value=2.1e-11 Score=88.25 Aligned_cols=82 Identities=29% Similarity=0.353 Sum_probs=62.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhh-h-cccc--cc---ccCC--CCccCcC--------HHHHHHHHHHHHHhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFY-Y-GRLD--NW---INEG--GGFLPYG--------ISGVVAGAATCFYAY 63 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~-~-~~~~--~~---~~~~--~~~~p~g--------~~g~~~a~~~~~fay 63 (83)
+|+|.++|+|.+++.+|++.++.+++.++. . .+.+ +. ..+. .+..|+| +.+++.++..++|+|
T Consensus 134 ~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af 213 (478)
T PF00324_consen 134 FGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAF 213 (478)
T ss_pred hhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccc
Confidence 489999999999999999999999998822 1 2111 11 1000 1123444 789999999999999
Q ss_pred ccHHHHHhhhhhhcCCC-CC
Q psy4781 64 VGFDKCWKCLIRIGVRT-TI 82 (83)
Q Consensus 64 ~G~~~v~~~aeE~k~~~-~~ 82 (83)
.|+|.++.++||+|||. +|
T Consensus 214 ~G~e~~a~~a~E~k~P~k~I 233 (478)
T PF00324_consen 214 VGFESIAILAEEAKNPRKTI 233 (478)
T ss_pred ccccccccccccCCCchhhh
Confidence 99999999999999998 54
No 27
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.13 E-value=3.6e-10 Score=80.53 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccC--cCHHHHHHHHHHHHHhhccHHHHHhhhhhhcC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLP--YGISGVVAGAATCFYAYVGFDKCWKCLIRIGV 78 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p--~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~ 78 (83)
+|+|.++|+|++.+++|+++++++++.++.+.+.++.... ..+.+ ....++..+....+|+|.|||.+++.+||+||
T Consensus 151 ~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~kn 229 (466)
T COG0531 151 RGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLF-APFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKN 229 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccC-CCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcC
Confidence 5899999999999999999999999999888765432210 01111 22456888999999999999999999999999
Q ss_pred CC
Q psy4781 79 RT 80 (83)
Q Consensus 79 ~~ 80 (83)
|.
T Consensus 230 p~ 231 (466)
T COG0531 230 PK 231 (466)
T ss_pred cc
Confidence 85
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.09 E-value=2.4e-10 Score=82.92 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=57.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---------cccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL---------DNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWK 71 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~---------~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~ 71 (83)
+|+|..+++|+++++++++.++++++..+...+. +++.+..+++.|.|+ +++.++....|+|.|||.+++
T Consensus 160 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~~~ 238 (482)
T TIGR00907 160 LPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGTAH 238 (482)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchhhH
Confidence 4789999999999999998887666555443221 111221113345554 566677778999999999999
Q ss_pred hhhhhcCCC
Q psy4781 72 CLIRIGVRT 80 (83)
Q Consensus 72 ~aeE~k~~~ 80 (83)
++||+|||.
T Consensus 239 ~a~E~knP~ 247 (482)
T TIGR00907 239 MAEEIENPE 247 (482)
T ss_pred HHHhcCChh
Confidence 999999997
No 29
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.09 E-value=2.5e-10 Score=81.11 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=62.6
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHHHHHhhhhhcccccccc---CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANL-MVMGIVIVVGFYYGRLDNWIN---EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl-~~l~~~ii~g~~~~~~~~~~~---~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~ 76 (83)
+|+|.++|+|++++.+++ ..++++++.++...+.+...+ ....+.|.++.+++.+....+|+|.|||.+++++||.
T Consensus 135 ~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 214 (426)
T PF13520_consen 135 LGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN 214 (426)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc
Confidence 589999999999999999 677888888887765432221 1123556677788999999999999999999999998
Q ss_pred cC
Q psy4781 77 GV 78 (83)
Q Consensus 77 k~ 78 (83)
|+
T Consensus 215 k~ 216 (426)
T PF13520_consen 215 KN 216 (426)
T ss_dssp SS
T ss_pred cc
Confidence 87
No 30
>KOG1287|consensus
Probab=99.00 E-value=1.3e-09 Score=79.96 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=60.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---cccccCC-CCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL---DNWINEG-GGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~---~~~~~~~-~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~ 76 (83)
.++|.++|+|+++|..|++++.+.++.|+..... +|+.+.. ++. ..+...+..|.-..+|+|.|||...+.+||+
T Consensus 152 ~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~-~~~~g~i~lafysglfa~~GWd~lN~vteEi 230 (479)
T KOG1287|consen 152 FSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGS-DTDVGNIALAFYSGLFAFSGWDYLNYVTEEI 230 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccC-cCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence 3689999999999999999999999999985433 3333210 011 1123345567777899999999999999999
Q ss_pred cCCC
Q psy4781 77 GVRT 80 (83)
Q Consensus 77 k~~~ 80 (83)
|||.
T Consensus 231 knP~ 234 (479)
T KOG1287|consen 231 KNPR 234 (479)
T ss_pred cCcc
Confidence 9997
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.95 E-value=1.7e-09 Score=84.67 Aligned_cols=82 Identities=10% Similarity=-0.066 Sum_probs=58.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-----------cccccCCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-----------DNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKC 69 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-----------~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v 69 (83)
+|+|.++|+|+++++++++.++.+++.++..... ..+.....+..+.+..+++....+.|++|.||+..
T Consensus 220 ~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag 299 (953)
T TIGR00930 220 AGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG 299 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998888776542111 00111000012333345777888889999999999
Q ss_pred HhhhhhhcCCC-CC
Q psy4781 70 WKCLIRIGVRT-TI 82 (83)
Q Consensus 70 ~~~aeE~k~~~-~~ 82 (83)
++++||+|+|+ +|
T Consensus 300 an~sgElKnP~r~I 313 (953)
T TIGR00930 300 ANISGDLKDPQKAI 313 (953)
T ss_pred HHHHHhccChhhhh
Confidence 99999999998 44
No 32
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.93 E-value=4.1e-09 Score=76.47 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=50.8
Q ss_pred CchhHHHHHHHHHHHH-HHHHHHHHHHhhhhhccc-c--ccccCCCCccCc--CHHHHHHHHHHHHHhhccHHHHHhhhh
Q psy4781 1 MGVKGSAFINSFLTLA-NLMVMGIVIVVGFYYGRL-D--NWINEGGGFLPY--GISGVVAGAATCFYAYVGFDKCWKCLI 74 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~-kl~~l~~~ii~g~~~~~~-~--~~~~~~~~~~p~--g~~g~~~a~~~~~fay~G~~~v~~~ae 74 (83)
+|+|.++|+|++.+.+ ++++++++++.|+..... + .......++.|. ++.++..+. .++|+|.|||.++..+|
T Consensus 140 ~gv~~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~ 218 (474)
T TIGR03813 140 RGVAAFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVK 218 (474)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHH
Confidence 5899999999987554 566666777777653211 1 110000112332 333444333 46899999999999999
Q ss_pred hhcCCC
Q psy4781 75 RIGVRT 80 (83)
Q Consensus 75 E~k~~~ 80 (83)
|+|||.
T Consensus 219 E~knP~ 224 (474)
T TIGR03813 219 DVDNPD 224 (474)
T ss_pred hccCcc
Confidence 999997
No 33
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.83 E-value=2.6e-08 Score=72.80 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=51.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhh-h-cccccc-ccC-CCCc----cCc--CHHHHHHHHHHHHHhhccHHHHH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFY-Y-GRLDNW-INE-GGGF----LPY--GISGVVAGAATCFYAYVGFDKCW 70 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~-~-~~~~~~-~~~-~~~~----~p~--g~~g~~~a~~~~~fay~G~~~v~ 70 (83)
+|+|.++|+|++.+.+++...+++++++.. . ....+. .+. ...+ .|. +..+++.+...++|+|.|||.++
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999998887655433333211 1 111111 010 0001 111 11368888888999999999999
Q ss_pred hhhhhhcCCC
Q psy4781 71 KCLIRIGVRT 80 (83)
Q Consensus 71 ~~aeE~k~~~ 80 (83)
..+||+|||.
T Consensus 232 ~~a~E~~~p~ 241 (496)
T PRK15238 232 GLVDKTENPE 241 (496)
T ss_pred HHHHhccCCC
Confidence 9999999997
No 34
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.71 E-value=7.1e-08 Score=71.03 Aligned_cols=80 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHHHHHhhhhhcccccc---ccCCCCccCcC-HHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANL-MVMGIVIVVGFYYGRLDNW---INEGGGFLPYG-ISGVVAGAATCFYAYVGFDKCWKCLIR 75 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl-~~l~~~ii~g~~~~~~~~~---~~~~~~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~aeE 75 (83)
+|+|.++|+|++.+.+.+ +.++++++.+......++. ....+++.|.. ..+.+......+|+|.|||.++..+||
T Consensus 140 ~G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E 219 (507)
T TIGR00910 140 GGTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINE 219 (507)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 489999999998665444 4344455545443322211 11112344431 113334444568999999999999999
Q ss_pred hcCCC
Q psy4781 76 IGVRT 80 (83)
Q Consensus 76 ~k~~~ 80 (83)
+|||.
T Consensus 220 ~knP~ 224 (507)
T TIGR00910 220 LENPG 224 (507)
T ss_pred ccCCc
Confidence 99997
No 35
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.66 E-value=1.6e-08 Score=75.08 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=66.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--c-------ccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL--D-------NWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWK 71 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~--~-------~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~ 71 (83)
.|+|..|..+.++..+|++.++.|++.|+...-. + ++. .+.+.+++|+.|+.+....+-|+|.|-|.+..
T Consensus 177 ~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw-~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgi 255 (541)
T COG0833 177 FGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYW-HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGL 255 (541)
T ss_pred hcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeee-cCCCCCCcchHHHHHHHhhheeeeeceeeeee
Confidence 4789999999999999999999999998764311 1 111 12345678999999999999999999999999
Q ss_pred hhhhhcCCC-CC
Q psy4781 72 CLIRIGVRT-TI 82 (83)
Q Consensus 72 ~aeE~k~~~-~~ 82 (83)
.|+|.|||. +|
T Consensus 256 aAgEs~nP~K~i 267 (541)
T COG0833 256 AAGESENPRKSI 267 (541)
T ss_pred eecccCCchhhh
Confidence 999999997 44
No 36
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.52 E-value=3.2e-07 Score=64.32 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=61.4
Q ss_pred CchhHHHHHHHHHHHHHHHH-HHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHH-HHHHhhccHHHHHhhhhhhcC
Q psy4781 1 MGVKGSAFINSFLTLANLMV-MGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAA-TCFYAYVGFDKCWKCLIRIGV 78 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~-l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~-~~~fay~G~~~v~~~aeE~k~ 78 (83)
.|+|..+|++.+++.+++.. ++++...+....+.+|+.| ..++|+.+++.++. ...|+|.|+|.....++|.|+
T Consensus 132 ~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P----~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~ 207 (359)
T TIGR00912 132 KGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLLP----VLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSK 207 (359)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccC----ccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCC
Confidence 48999999999999998877 3444444444445666666 66778888888887 889999999999999999998
Q ss_pred CCC
Q psy4781 79 RTT 81 (83)
Q Consensus 79 ~~~ 81 (83)
|..
T Consensus 208 ~~~ 210 (359)
T TIGR00912 208 KKK 210 (359)
T ss_pred hhh
Confidence 764
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.39 E-value=1.1e-06 Score=62.02 Aligned_cols=77 Identities=9% Similarity=0.105 Sum_probs=61.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHH-HHHhhhhhhcCC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFD-KCWKCLIRIGVR 79 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~-~v~~~aeE~k~~ 79 (83)
+|+|..+|+|++++..|+..++++++.++.+.+.+|+.|.. ..+.++.+++.+....+++| |++ .+....+|.|+|
T Consensus 131 ~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~ 207 (381)
T TIGR00837 131 LSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVA--LDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGN 207 (381)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcCc--cccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccC
Confidence 48999999999999999999999999998887777765521 11346778888889888888 775 688889998754
Q ss_pred C
Q psy4781 80 T 80 (83)
Q Consensus 80 ~ 80 (83)
+
T Consensus 208 ~ 208 (381)
T TIGR00837 208 V 208 (381)
T ss_pred H
Confidence 3
No 38
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.68 E-value=0.00016 Score=52.26 Aligned_cols=75 Identities=8% Similarity=-0.103 Sum_probs=61.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhh----hhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCL----IRI 76 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~a----eE~ 76 (83)
.|.|..+|++.++...+++.++++.+....+.+.+++...+ ....++..++.++..++|||.|+|.++.++ +|-
T Consensus 139 ~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~ 216 (397)
T TIGR00814 139 FGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEY 216 (397)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCC--cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHc
Confidence 48899999999999999999999999898888877764310 111246789999999999999999999998 555
Q ss_pred c
Q psy4781 77 G 77 (83)
Q Consensus 77 k 77 (83)
+
T Consensus 217 ~ 217 (397)
T TIGR00814 217 G 217 (397)
T ss_pred C
Confidence 4
No 39
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.29 E-value=0.0014 Score=47.24 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=57.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhc-------cHHHHHhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYV-------GFDKCWKCL 73 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~-------G~~~v~~~a 73 (83)
++.|...++|+++|-++++.++++++.|+.+...+...+ .+. ...+ ..+..+..-..+.|+ ||-.+.++.
T Consensus 128 ~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~-~~~-~~~~-~~f~~g~l~GY~TmD~laal~fg~iiv~~i~ 204 (378)
T TIGR00796 128 NPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGPILAA-SGA-YASQ-QAFSKGFLEGYLTMDALAALVFGIIVVNAIR 204 (378)
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCcCCc-ccc-cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999998743322111 111 1111 356778888899999 999999999
Q ss_pred h-hhcCCC
Q psy4781 74 I-RIGVRT 80 (83)
Q Consensus 74 e-E~k~~~ 80 (83)
+ |.|+|.
T Consensus 205 ~~g~~~~~ 212 (378)
T TIGR00796 205 SRGVTKPK 212 (378)
T ss_pred HhCCCCHH
Confidence 8 998886
No 40
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=96.61 E-value=0.018 Score=40.05 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=62.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
.|.+.-+|...++..+-++.++++........+.+|+.| ..+.|+..++.+.....+.|.|.+.......-+|+|.
T Consensus 130 ~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P----~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 205 (320)
T PF03845_consen 130 KGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDNLLP----VLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK 205 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeC----cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 478888998888777777777777766666677777777 7788999999998889999999999998888888764
No 41
>KOG1289|consensus
Probab=96.60 E-value=0.0043 Score=46.73 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-ccc---------CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhh
Q psy4781 3 VKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDN-WIN---------EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKC 72 (83)
Q Consensus 3 v~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~-~~~---------~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~ 72 (83)
.|.-+|++.+-+.+.++.+++.++.-+...+..+ +.. ...+..+.|| .+.-+.....|...|+|....+
T Consensus 196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~~~~wt~sGyDa~~H~ 274 (550)
T KOG1289|consen 196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFFNPAWTMSGYDAAAHM 274 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhccceeEEeccCchHHH
Confidence 4778899999999999888877776655432221 210 0112223455 3455566678999999999999
Q ss_pred hhhhcCCC
Q psy4781 73 LIRIGVRT 80 (83)
Q Consensus 73 aeE~k~~~ 80 (83)
+||+||+.
T Consensus 275 aEE~~nAs 282 (550)
T KOG1289|consen 275 AEETKNAS 282 (550)
T ss_pred HHHhcchh
Confidence 99999986
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=95.22 E-value=0.15 Score=36.96 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIG 77 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k 77 (83)
|.|...|++++++..|++.++.+++.++.+.+.+++...+ ..+..+..++.+....++||.=...++.+....+
T Consensus 138 g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~--~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~ 211 (394)
T PF03222_consen 138 GTKAVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAP--PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG 211 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccc--cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC
Confidence 6788999999999999999999999999888877654310 1234578899999999999987788888776665
No 43
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=94.31 E-value=0.13 Score=37.41 Aligned_cols=77 Identities=8% Similarity=-0.031 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCcc-CcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFL-PYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~-p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
|-+..-|.+.++...+++.++++.+.-..+.+.++....+ .. +.-+..++.+....+|+|..-..+..+..|.|++.
T Consensus 146 ~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~ 223 (415)
T COG0814 146 GTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALP--SASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS 223 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhccc--ccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch
Confidence 5577788999999999999988887777776655543210 11 34467899999999999999999999999998765
No 44
>PRK10483 tryptophan permease; Provisional
Probab=88.81 E-value=1.6 Score=32.14 Aligned_cols=74 Identities=5% Similarity=-0.068 Sum_probs=49.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIR 75 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE 75 (83)
.|.|...|+++++...|++.+++.+...+.+.+.+++.+.. ...+..+..++.+.+..++||.=-..++.+-+.
T Consensus 144 ~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y 217 (414)
T PRK10483 144 LSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKY 217 (414)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHH
Confidence 37889999999999999999988888777777766553210 011112345677777777666544555555443
No 45
>PRK09664 tryptophan permease TnaB; Provisional
Probab=87.18 E-value=2.4 Score=31.22 Aligned_cols=71 Identities=8% Similarity=0.002 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcC-HHHHHHHHHHHHHhhccHHHHHhh
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYG-ISGVVAGAATCFYAYVGFDKCWKC 72 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~ 72 (83)
|.|...|+++++...|++.+++++.....+.+.+++.+......... +..++.+.+..++||.=-..++.+
T Consensus 144 gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl 215 (415)
T PRK09664 144 SSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSL 215 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHH
Confidence 77899999999999999999988888888887766543110000001 234666666665555333344333
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=86.31 E-value=2.9 Score=30.59 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=48.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIR 75 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE 75 (83)
.|.|...|+++++...+++.+++++.....+.+.+++... |.+..-++.+.+..++||.=-..++.+..-
T Consensus 137 ~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-----~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y 206 (403)
T PRK15132 137 VGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTL-----PLQQGLALSAIPVIFTSFGFHGSVPSIVSY 206 (403)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-----CccccHHHHHHHHHHHHhhCCcccHHHHHH
Confidence 3778999999999999999998888877877777766431 111123677777777766544555555443
No 47
>PLN03074 auxin influx permease; Provisional
Probab=83.72 E-value=11 Score=28.09 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCCC
Q psy4781 48 GISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTT 81 (83)
Q Consensus 48 g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~~ 81 (83)
++...+.++..++|+|.|--....+=.|+|+|+.
T Consensus 231 ~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~ 264 (473)
T PLN03074 231 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 264 (473)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHhccChhc
Confidence 4556777777889999999999999999999973
No 48
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=79.88 E-value=6.7 Score=29.27 Aligned_cols=73 Identities=10% Similarity=-0.053 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC----CccCcC-HHHHHHHHHHHHHhhccHHHHHhhh
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGG----GFLPYG-ISGVVAGAATCFYAYVGFDKCWKCL 73 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~----~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~a 73 (83)
.|-|..-|++.++...|++.++++.+..+.+.+.+++...+. .....+ ...++.+.+.+++||.=-..++.+.
T Consensus 155 ~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~ 232 (443)
T PRK13629 155 FGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFV 232 (443)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHH
Confidence 377888999999999999999999999888888777642110 010111 1347888888888875444444443
No 49
>PTZ00206 amino acid transporter; Provisional
Probab=65.91 E-value=44 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 51 GVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 51 g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
..+.+.....|+|.+-..+...-+|+|+|+
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t 286 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRS 286 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccc
Confidence 577889999999999999999999999875
No 50
>KOG1304|consensus
Probab=62.21 E-value=26 Score=26.35 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 48 GISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 48 g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
+++++--....+.|||.|...+--+=+++|+|+
T Consensus 239 ~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~ 271 (449)
T KOG1304|consen 239 GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ 271 (449)
T ss_pred chhhhHHHHHHHHHHhccceEEEehhhcccChh
Confidence 366777778888899999988888888888886
No 51
>PHA02764 hypothetical protein; Provisional
Probab=61.19 E-value=40 Score=24.75 Aligned_cols=30 Identities=7% Similarity=-0.107 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 51 GVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 51 g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
.+..|.....=+|.=.|...+.++|+||..
T Consensus 182 t~~~a~~~~l~~~~fi~a~~y~~~ei~n~~ 211 (399)
T PHA02764 182 TLLSALLFDLSAFIFINAISYIAGEIKNIK 211 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhcch
Confidence 455666666666666799999999999853
No 52
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=56.65 E-value=6.9 Score=27.54 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCCC
Q psy4781 48 GISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTT 81 (83)
Q Consensus 48 g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~~ 81 (83)
.+.++..+.....|+|.+-..+...-+|+|+|+.
T Consensus 190 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~ 223 (409)
T PF01490_consen 190 SFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSK 223 (409)
T ss_pred hhhHHHHhhhhhhhhhhcccccceeeeeccCCcc
Confidence 4568999999999999999999999999999874
No 53
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=53.71 E-value=21 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy4781 7 AFINSFLTLANLMVMGIVIVVGFYYG 32 (83)
Q Consensus 7 ~~~q~~lt~~kl~~l~~~ii~g~~~~ 32 (83)
-|.+.+|.++-.++++++++++...+
T Consensus 10 RK~N~iLNiaI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 10 RKTNKILNIAIGIVSLLIIIVAYQLF 35 (217)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhe
Confidence 46677777777777766666665544
No 54
>PRK02935 hypothetical protein; Provisional
Probab=43.78 E-value=54 Score=19.96 Aligned_cols=25 Identities=36% Similarity=0.216 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIV 26 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii 26 (83)
+.|-+.|+|.+=|+...++++-+++
T Consensus 2 ~~k~ssKINkiRt~aL~lvfiG~~v 26 (110)
T PRK02935 2 SIKYSNKINKIRTFALSLVFIGFIV 26 (110)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999888777655543
No 55
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=41.07 E-value=54 Score=17.44 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhhcCC
Q psy4781 51 GVVAGAATCFYAYVGFDKCWKCLIRIGVR 79 (83)
Q Consensus 51 g~~~a~~~~~fay~G~~~v~~~aeE~k~~ 79 (83)
.++.+.++++|...-...+..-++|-||-
T Consensus 12 PFf~ag~iv~ygv~k~~~a~~ns~E~~ND 40 (54)
T PF04911_consen 12 PFFAAGAIVYYGVNKAQNAMMNSDEFKND 40 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHhcC
Confidence 57888888999888888888889998753
No 56
>KOG2083|consensus
Probab=34.62 E-value=28 Score=27.26 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYG 32 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~ 32 (83)
.|+++..|+|.++-++.++.+.-+++..++..
T Consensus 165 ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~ 196 (643)
T KOG2083|consen 165 AGVEWEAKLQIVLLLILLIAIADFLVGSFFSP 196 (643)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhhccCh
Confidence 38999999999999999999988887766543
No 57
>PHA02974 putative IMV membrane protein; Provisional
Probab=33.12 E-value=60 Score=18.71 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy4781 4 KGSAFINSFLTLANLMVMGIVI 25 (83)
Q Consensus 4 ~~~~~~q~~lt~~kl~~l~~~i 25 (83)
+.+.++++++..++...+++|+
T Consensus 41 ~ss~tf~rvv~~lE~vailifi 62 (81)
T PHA02974 41 RSSFTAGKILRFMEIFSTIMFI 62 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhhee
Confidence 4556889999999998887765
No 58
>PHA03062 putative IMV membrane protein; Provisional
Probab=32.79 E-value=74 Score=18.22 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4781 5 GSAFINSFLTLANLMVMGIVI 25 (83)
Q Consensus 5 ~~~~~q~~lt~~kl~~l~~~i 25 (83)
.|+..+++++.++...+++++
T Consensus 42 RS~~~~rVl~~lE~va~lifI 62 (78)
T PHA03062 42 RSATFNKVVSFLEYVAILIFV 62 (78)
T ss_pred hhhhhHHHHHHHHHHHHHHhh
Confidence 356899999999999988875
No 59
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=32.68 E-value=42 Score=16.03 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=15.8
Q ss_pred cCHHHHHHHHHHHHHhhccH
Q psy4781 47 YGISGVVAGAATCFYAYVGF 66 (83)
Q Consensus 47 ~g~~g~~~a~~~~~fay~G~ 66 (83)
+.|.|+..+..+.++++.|-
T Consensus 8 H~W~Gl~~g~~l~~~~~tG~ 27 (37)
T PF13706_consen 8 HRWLGLILGLLLFVIFLTGA 27 (37)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 35778888888888888884
No 60
>PHA03055 Hypothetical protein; Provisional
Probab=31.03 E-value=80 Score=18.12 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4781 6 SAFINSFLTLANLMVMGIVI 25 (83)
Q Consensus 6 ~~~~q~~lt~~kl~~l~~~i 25 (83)
|+..+++++++++..+++++
T Consensus 42 S~~~~rVl~~lE~va~lifI 61 (79)
T PHA03055 42 SLKFNRAVTIFKYIGLFIYI 61 (79)
T ss_pred hhhhHHHHHHHHHHHHHHhh
Confidence 56899999999999988875
No 61
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=30.32 E-value=1.1e+02 Score=17.84 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy4781 11 SFLTLANLMVMGIVIVVGF 29 (83)
Q Consensus 11 ~~lt~~kl~~l~~~ii~g~ 29 (83)
.+++++.+++++++++.-+
T Consensus 26 ~lMtILivLVIIiLlImlf 44 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444433
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=29.74 E-value=2.2e+02 Score=20.62 Aligned_cols=75 Identities=8% Similarity=-0.027 Sum_probs=34.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-cccccCCCCccCcCHHHHHHHHHHHHHhhccH-HHHHhhhhhhcCC
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-DNWINEGGGFLPYGISGVVAGAATCFYAYVGF-DKCWKCLIRIGVR 79 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~-~~v~~~aeE~k~~ 79 (83)
|.|...|++++.+.+.++.++...+..+...+. +.+.. ..|.+...++.++..+.=.+.+| -.+++.+...|+|
T Consensus 138 G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~ 213 (404)
T PRK11017 138 GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKA----IVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSA 213 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhc----CCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCc
Confidence 566777888887766655444433322222211 11111 01112234455554433333333 4566666666665
Q ss_pred C
Q psy4781 80 T 80 (83)
Q Consensus 80 ~ 80 (83)
.
T Consensus 214 ~ 214 (404)
T PRK11017 214 K 214 (404)
T ss_pred c
Confidence 4
No 63
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.08 E-value=1.1e+02 Score=16.42 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4781 6 SAFINSFLTLANLMVMGIVIV 26 (83)
Q Consensus 6 ~~~~q~~lt~~kl~~l~~~ii 26 (83)
..|.|.++..+.++.|++.++
T Consensus 35 ~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 35 MRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555544443
No 64
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=26.87 E-value=81 Score=18.36 Aligned_cols=22 Identities=36% Similarity=0.821 Sum_probs=16.4
Q ss_pred CCccCcCHHHHHHHHHHHHHhh
Q psy4781 42 GGFLPYGISGVVAGAATCFYAY 63 (83)
Q Consensus 42 ~~~~p~g~~g~~~a~~~~~fay 63 (83)
+.++|.|...+.++....+|.|
T Consensus 75 ~k~~Pagl~~~~s~~~~~~y~Y 96 (96)
T PF03647_consen 75 RKFMPAGLMALLSGAMLAFYYY 96 (96)
T ss_dssp SSSCCCHHHHHHHHHHHHHHC-
T ss_pred CCCccHHHHHHHHHHHHHHhcC
Confidence 3467888888888888888766
No 65
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=26.83 E-value=2.5e+02 Score=20.25 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4781 2 GVKGSAFINSFLTLANLMVMGIVIVVGFYY 31 (83)
Q Consensus 2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~ 31 (83)
|.|...|++++.+.+.++..+...+..+.+
T Consensus 130 G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~ 159 (386)
T TIGR02358 130 GPLAFVWLNNWSVWLLLIATLWLLVVVFSK 159 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667778888888777776665555444333
No 66
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=26.56 E-value=42 Score=17.63 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=13.7
Q ss_pred HhhccHHHHHhhhhhhc
Q psy4781 61 YAYVGFDKCWKCLIRIG 77 (83)
Q Consensus 61 fay~G~~~v~~~aeE~k 77 (83)
--+.|+|.++.+|.|+.
T Consensus 6 ~p~iGYe~aa~iAk~A~ 22 (55)
T PF10415_consen 6 NPYIGYEKAAEIAKEAL 22 (55)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchhccHHHHHHHHHHH
Confidence 35789999999998763
No 67
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=25.25 E-value=1e+02 Score=15.24 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy4781 13 LTLANLMVMGIVIVVGFY 30 (83)
Q Consensus 13 lt~~kl~~l~~~ii~g~~ 30 (83)
+..+..++++++|++.+.
T Consensus 14 l~~llflv~imliif~f~ 31 (43)
T PF11395_consen 14 LSFLLFLVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555566666666554
No 68
>PF04713 Pox_I5: Poxvirus protein I5; InterPro: IPR006803 This entry represents the Poxvirus protein I5.
Probab=25.07 E-value=1.1e+02 Score=17.49 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4781 5 GSAFINSFLTLANLMVMGIVI 25 (83)
Q Consensus 5 ~~~~~q~~lt~~kl~~l~~~i 25 (83)
.|.+.+++++.++.+.+++++
T Consensus 41 rS~~~~rVl~~le~vailifI 61 (77)
T PF04713_consen 41 RSATFNRVLTFLEYVAILIFI 61 (77)
T ss_pred hhhhhHHHHHHHHHHHHHhhc
Confidence 477889999999998888775
No 69
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=24.68 E-value=1.4e+02 Score=16.57 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=21.8
Q ss_pred cCHHHHHHHHH--HHHHhhccHHHHHhhhhhhcCCC
Q psy4781 47 YGISGVVAGAA--TCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 47 ~g~~g~~~a~~--~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
+|..|.+-|+. +...++.|+..+..-=+|+-+|=
T Consensus 11 nGi~G~LIAvvLLLsIl~~lt~~ai~~Qq~~At~~Y 46 (66)
T PF13179_consen 11 NGITGMLIAVVLLLSILAFLTYWAIKVQQEQATNPY 46 (66)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 57777766654 44666777777766666665553
No 70
>COG3781 Predicted membrane protein [Function unknown]
Probab=24.47 E-value=69 Score=22.76 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHhhccHHHHHhhhhhhcCCC
Q psy4781 58 TCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 58 ~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
++-|.|.|.|. +|||+++|=
T Consensus 246 lIayTffglea---ia~EiEdPF 265 (306)
T COG3781 246 LIAYTFFGLEA---IAEEIEDPF 265 (306)
T ss_pred HHHHHHHHHHH---HHHHHhCcc
Confidence 45678888886 478888873
No 71
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.42 E-value=1.2e+02 Score=18.62 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy4781 3 VKGSAFINSFLTLANLMVMGIVI 25 (83)
Q Consensus 3 v~~~~~~q~~lt~~kl~~l~~~i 25 (83)
.|-++|+|.+=++...++++-++
T Consensus 2 ~~~~~KiN~~R~~al~lif~g~~ 24 (114)
T PF11023_consen 2 IKYSSKINKIRTFALSLIFIGMI 24 (114)
T ss_pred CcchhHHHHHHHHHHHHHHHHHH
Confidence 46788999998887776665444
No 72
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=23.96 E-value=77 Score=18.08 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4781 6 SAFINSFLTLANLMVMGIVI 25 (83)
Q Consensus 6 ~~~~q~~lt~~kl~~l~~~i 25 (83)
|++.+.+++++++..+++++
T Consensus 39 S~~~~Rvltvle~va~l~~I 58 (78)
T PHA02702 39 SRGALRVLTVLDFVSLLTTI 58 (78)
T ss_pred cccchhHHHHHHHHHHHHHh
Confidence 45788899999998888775
No 73
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=23.70 E-value=2.1e+02 Score=18.44 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhh
Q psy4781 9 INSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAY 63 (83)
Q Consensus 9 ~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay 63 (83)
-..+-+..+++..+++........+.++ .| .++| ..|++.|++.+++..
T Consensus 16 s~Il~t~~r~l~P~illfs~ylll~Gh~-~P-GGGF----qgGlI~Aaa~iL~~l 64 (159)
T PRK12505 16 STIIMTTVRVVAPFVFTFGLFVMFHGAD-SP-GGGF----QGGVIVASVVLMLAF 64 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCC-CC-CchH----HHHHHHHHHHHHHHH
Confidence 3456677888888776665555454443 23 2333 346666665554433
No 74
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=22.83 E-value=3.4e+02 Score=20.48 Aligned_cols=63 Identities=6% Similarity=-0.003 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccH
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGF 66 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~ 66 (83)
+|.|.-.++|++.+...++..+..+..-+-..+..+... .-.|..+..+..+.++++=.+..|
T Consensus 147 fG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~---~~~~~~~~~fl~a~slv~g~~~sw 209 (442)
T COG1457 147 FGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALW---VKGPTSPLSFLSALSLVIGSFASW 209 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceee---ccCCCcchhHHHHHHHHHHHHHhh
Confidence 377888889999888877766665554443222211110 011334455666666665555555
No 75
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=21.35 E-value=91 Score=17.38 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhhhcc
Q psy4781 18 LMVMGIVIVVGFYYGR 33 (83)
Q Consensus 18 l~~l~~~ii~g~~~~~ 33 (83)
+.+|++++++|++.+.
T Consensus 6 i~VLlaLvLIg~fAVq 21 (71)
T PF04202_consen 6 IAVLLALVLIGSFAVQ 21 (71)
T ss_pred HHHHHHHHHHhhheee
Confidence 4556666667777654
No 76
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=20.79 E-value=1.9e+02 Score=16.82 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy4781 10 NSFLTLANLMVMGIVIVVGFYY 31 (83)
Q Consensus 10 q~~lt~~kl~~l~~~ii~g~~~ 31 (83)
...+.++.++++++++++|...
T Consensus 34 KrlliivvVvVlvVvvivg~LL 55 (93)
T PF08999_consen 34 KRLLIIVVVVVLVVVVIVGALL 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeehhHHHHHHHHH
Confidence 4455555566666666666554
Done!