Query psy4781
Match_columns 83
No_of_seqs 133 out of 1094
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:32:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 99.4 5E-13 1.7E-17 93.7 5.7 77 1-80 142-218 (444)
2 3l1l_A Arginine/agmatine antip 99.2 1.2E-11 4.1E-16 86.5 6.2 77 1-80 142-221 (445)
3 4djk_A Probable glutamate/gamm 98.9 7.1E-10 2.4E-14 78.8 2.5 80 1-80 147-231 (511)
4 2a65_A Leutaa, Na(+):neurotran 45.9 84 0.0029 22.9 7.4 75 1-77 185-270 (519)
5 2jln_A MHP1; hydantoin, transp 43.9 83 0.0028 22.4 6.5 78 1-81 159-239 (501)
6 2iub_A CORA, divalent cation t 16.7 2.4E+02 0.0082 19.0 4.6 27 8-34 301-327 (363)
7 1spf_A Pulmonary surfactant-as 14.2 1.2E+02 0.004 13.8 3.4 21 10-30 11-31 (35)
8 4ev6_A Magnesium transport pro 13.9 3E+02 0.01 18.3 5.3 26 9-34 278-303 (339)
9 2loo_A Transmembrane protein 1 17.4 41 0.0014 19.4 0.0 21 43-63 85-105 (108)
10 4b19_A PEPA1; toxin, toxin apo 13.2 99 0.0034 13.8 1.3 13 52-64 11-23 (30)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.38 E-value=5e-13 Score=93.67 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT 80 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~ 80 (83)
+|+|.++|+|++++.+|++.++++++.++...+.+++.| .+.|.|+.+++.+....+|+|.|+|.+++.+||+|||.
T Consensus 142 ~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~ 218 (444)
T 3gia_A 142 FGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP---DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK 218 (444)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSC---CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCC---CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc
Confidence 489999999999999999999999999998887777765 25567788899999999999999999999999999985
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.24 E-value=1.2e-11 Score=86.54 Aligned_cols=77 Identities=12% Similarity=0.241 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcC---HHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYG---ISGVVAGAATCFYAYVGFDKCWKCLIRIG 77 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g---~~g~~~a~~~~~fay~G~~~v~~~aeE~k 77 (83)
+|+|..+|+|++++.+|++.++++++.++.+.+.+++.+ .+.|.+ +.+++.+....+|+|.|||.+++++||+|
T Consensus 142 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k 218 (445)
T 3l1l_A 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA---AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK 218 (445)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCC---C-----------HHHHHHHHHHTTTTTTHHHHGGGGBS
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhccc---ccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 489999999999999999999999999988776655532 133333 56789999999999999999999999999
Q ss_pred CCC
Q psy4781 78 VRT 80 (83)
Q Consensus 78 ~~~ 80 (83)
||.
T Consensus 219 ~p~ 221 (445)
T 3l1l_A 219 NPK 221 (445)
T ss_dssp SHH
T ss_pred Ccc
Confidence 985
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.87 E-value=7.1e-10 Score=78.80 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=53.7
Q ss_pred CchhHHHHHHHHHHHHHHH-HHHHHHHhhhhhccccc---cccCCCCccCcC-HHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781 1 MGVKGSAFINSFLTLANLM-VMGIVIVVGFYYGRLDN---WINEGGGFLPYG-ISGVVAGAATCFYAYVGFDKCWKCLIR 75 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~-~l~~~ii~g~~~~~~~~---~~~~~~~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~aeE 75 (83)
+|+|.++|+|++++.++++ .++++++.|+.....++ .....+++.|.. ..+.+.+....+|+|.|||.+++++||
T Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E 226 (511)
T 4djk_A 147 GGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNE 226 (511)
T ss_dssp TCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSS
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5899999999999988655 46667777765432211 111112233431 123456677889999999999999999
Q ss_pred hcCCC
Q psy4781 76 IGVRT 80 (83)
Q Consensus 76 ~k~~~ 80 (83)
+|||.
T Consensus 227 ~k~P~ 231 (511)
T 4djk_A 227 MSNPG 231 (511)
T ss_dssp SSCCT
T ss_pred ccCcc
Confidence 99997
No 4
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=45.95 E-value=84 Score=22.86 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=46.8
Q ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----cc-----ccccCCCCccCcCHHHHHHHHHHHHHhhc-cHHHH
Q psy4781 1 MGV-KGSAFINSFLTLANLMVMGIVIVVGFYYGR----LD-----NWINEGGGFLPYGISGVVAGAATCFYAYV-GFDKC 69 (83)
Q Consensus 1 ~Gv-~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~----~~-----~~~~~~~~~~p~g~~g~~~a~~~~~fay~-G~~~v 69 (83)
+|+ |..+|+..++..+..+.++++++-++...+ .. .+.|+.+.+. ...-...|+.-+||++. |+...
T Consensus 185 ~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~A~gQ~FFSLslG~G~~ 262 (519)
T 2a65_A 185 RGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIAAVGQIFFTLSLGFGAI 262 (519)
T ss_dssp TCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHHHHHHHHHHHTTTSSHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHHHHHHHHHHhHHHHhHH
Confidence 478 778999999998888888888877776543 11 1233222222 13345667777888753 56555
Q ss_pred Hhhhhhhc
Q psy4781 70 WKCLIRIG 77 (83)
Q Consensus 70 ~~~aeE~k 77 (83)
...+.=.|
T Consensus 263 ity~SY~~ 270 (519)
T 2a65_A 263 ITYASYVR 270 (519)
T ss_dssp HHHHTTSC
T ss_pred hhhhcccC
Confidence 55555443
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=43.92 E-value=83 Score=22.36 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=40.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccccCCCCccCcCHHHHHHHHHHHHHhhccH-HHHHhhhhhhc
Q psy4781 1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL--DNWINEGGGFLPYGISGVVAGAATCFYAYVGF-DKCWKCLIRIG 77 (83)
Q Consensus 1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~--~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~-~~v~~~aeE~k 77 (83)
+|.|...+++++.+.+.++.++.+.+..+...+. ++....... ....+++.++.++.=.+..+ -.++..+.+.|
T Consensus 159 ~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~---~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~ 235 (501)
T 2jln_A 159 YGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGE---NPGMPFSTAIMIFVGGWIAVVVSIHDIVKECK 235 (501)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCS---SCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBC
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCc---cchHHHHHHHHHHHHHHHHHHhccCcccccCC
Confidence 4778888999998888877776666655544332 111110000 11113444444332122222 45677777777
Q ss_pred CCCC
Q psy4781 78 VRTT 81 (83)
Q Consensus 78 ~~~~ 81 (83)
++..
T Consensus 236 ~~~~ 239 (501)
T 2jln_A 236 VDPN 239 (501)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 7653
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=16.72 E-value=2.4e+02 Score=18.98 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy4781 8 FINSFLTLANLMVMGIVIVVGFYYGRL 34 (83)
Q Consensus 8 ~~q~~lt~~kl~~l~~~ii~g~~~~~~ 34 (83)
+..+.+|++-.+.+....+.|++--+.
T Consensus 301 ~imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 301 EVMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 344556666666666666777764443
No 7
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=14.24 E-value=1.2e+02 Score=13.81 Aligned_cols=21 Identities=24% Similarity=0.524 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy4781 10 NSFLTLANLMVMGIVIVVGFY 30 (83)
Q Consensus 10 q~~lt~~kl~~l~~~ii~g~~ 30 (83)
...+.+..+.+++.++++|..
T Consensus 11 KrLlivVvVvVlvVvVivGaL 31 (35)
T 1spf_A 11 KRLLVVVVVVVLVVVVIVGAL 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred heEEEEEeeehhhHHHHHHHH
Confidence 344455555566666666643
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=13.86 E-value=3e+02 Score=18.26 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc
Q psy4781 9 INSFLTLANLMVMGIVIVVGFYYGRL 34 (83)
Q Consensus 9 ~q~~lt~~kl~~l~~~ii~g~~~~~~ 34 (83)
..+.+|++-++.+...++.|++--+.
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 34455555555555566677765443
No 9
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=17.45 E-value=41 Score=19.41 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=15.8
Q ss_pred CccCcCHHHHHHHHHHHHHhh
Q psy4781 43 GFLPYGISGVVAGAATCFYAY 63 (83)
Q Consensus 43 ~~~p~g~~g~~~a~~~~~fay 63 (83)
.++|.|....++++.+++|.|
T Consensus 85 K~mPaGl~a~lS~~m~~~y~~ 105 (108)
T 2loo_A 85 KIMPAGLVAGLSLMMILRLVL 105 (108)
Confidence 467778777777777777776
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=13.18 E-value=99 Score=13.77 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhc
Q psy4781 52 VVAGAATCFYAYV 64 (83)
Q Consensus 52 ~~~a~~~~~fay~ 64 (83)
++++...++|+|+
T Consensus 11 visGcivalF~hW 23 (30)
T 4b19_A 11 VISGCAIAFFSYW 23 (30)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Done!