Query psy4781
Match_columns 83
No_of_seqs 133 out of 1094
Neff 7.8
Searched_HMMs 13730
Date Fri Aug 16 17:32:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4781.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4781hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pbza1 c.30.1.8 (A:4-99) 5-fo 23.9 19 0.0014 19.2 1.6 12 59-70 66-77 (96)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 20.8 22 0.0016 14.2 1.1 10 57-66 4-13 (26)
3 d1r89a1 a.160.1.3 (A:143-257) 13.7 44 0.0032 18.3 1.7 34 47-82 26-59 (115)
4 d2axti1 f.23.37.1 (I:1-35) Pho 10.5 78 0.0057 13.4 3.3 16 19-34 13-28 (35)
5 d1kqfb2 f.23.22.1 (B:246-290) 8.6 73 0.0053 14.3 1.2 21 46-66 14-34 (45)
6 d2r85a1 c.30.1.8 (A:1-99) 5-fo 8.6 63 0.0046 17.1 1.1 12 59-70 71-82 (99)
7 d1r4wa_ c.47.1.13 (A:) Mitocho 7.8 73 0.0053 17.5 1.2 18 59-76 15-32 (221)
8 d1m56d_ f.23.8.1 (D:) Bacteria 7.6 1.2E+02 0.0087 13.4 4.2 20 9-28 19-38 (42)
9 d1qled_ f.23.8.1 (D:) Bacteria 7.0 1.3E+02 0.0096 13.3 4.2 20 9-28 20-39 (43)
10 d2r7ka1 c.30.1.8 (A:1-123) 5-f 6.3 1E+02 0.0073 16.9 1.3 12 59-70 94-105 (123)
No 1
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=23.94 E-value=19 Score=19.23 Aligned_cols=12 Identities=33% Similarity=0.626 Sum_probs=9.7
Q ss_pred HHHhhccHHHHH
Q psy4781 59 CFYAYVGFDKCW 70 (83)
Q Consensus 59 ~~fay~G~~~v~ 70 (83)
.|..|.|+|.+-
T Consensus 66 Sfv~Y~G~~~ie 77 (96)
T d2pbza1 66 SFVAYLGIEAIE 77 (96)
T ss_dssp THHHHSCHHHHH
T ss_pred CEEEEecHHHHh
Confidence 367899999983
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.83 E-value=22 Score=14.17 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=5.8
Q ss_pred HHHHHhhccH
Q psy4781 57 ATCFYAYVGF 66 (83)
Q Consensus 57 ~~~~fay~G~ 66 (83)
++..|.|++|
T Consensus 4 slaiw~fw~f 13 (26)
T d1rzhh2 4 SLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4456666665
No 3
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.75 E-value=44 Score=18.26 Aligned_cols=34 Identities=29% Similarity=0.243 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCCCC
Q psy4781 47 YGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTI 82 (83)
Q Consensus 47 ~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~~~ 82 (83)
.|++|-+.= +...-|.||+.+...+..-|+|.-|
T Consensus 26 ~GFSGYl~E--lLi~~YGsF~~~lk~as~wk~~~~I 59 (115)
T d1r89a1 26 RGFSGYLCE--LLIVFYGSFLETVKNARRWTRRTVI 59 (115)
T ss_dssp CCBCHHHHH--HHHHHHSSHHHHHHHHTTCCTTEEE
T ss_pred CcchhHHHH--HHHHHHCCHHHHHHHHHhcCCCeEE
Confidence 355555443 3455789999999999888877644
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.48 E-value=78 Score=13.38 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhhhccc
Q psy4781 19 MVMGIVIVVGFYYGRL 34 (83)
Q Consensus 19 ~~l~~~ii~g~~~~~~ 34 (83)
+-.+.+.++|+...++
T Consensus 13 ~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 13 TFFVLLFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhhccCCC
Confidence 3334444556655443
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=8.64 E-value=73 Score=14.35 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=13.9
Q ss_pred CcCHHHHHHHHHHHHHhhccH
Q psy4781 46 PYGISGVVAGAATCFYAYVGF 66 (83)
Q Consensus 46 p~g~~g~~~a~~~~~fay~G~ 66 (83)
|.+..++.+++...+|=|.+.
T Consensus 14 pl~~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 14 PLAAAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhee
Confidence 445667777777777777654
No 6
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=8.62 E-value=63 Score=17.09 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=9.6
Q ss_pred HHHhhccHHHHH
Q psy4781 59 CFYAYVGFDKCW 70 (83)
Q Consensus 59 ~~fay~G~~~v~ 70 (83)
.|.+|.|+|.+-
T Consensus 71 Sfv~Y~G~d~ie 82 (99)
T d2r85a1 71 SFVAHLGIELVE 82 (99)
T ss_dssp THHHHHCHHHHH
T ss_pred CEEEEEcHHHHh
Confidence 367899999874
No 7
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.78 E-value=73 Score=17.52 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.2
Q ss_pred HHHhhccHHHHHhhhhhh
Q psy4781 59 CFYAYVGFDKCWKCLIRI 76 (83)
Q Consensus 59 ~~fay~G~~~v~~~aeE~ 76 (83)
+.|+|.|+.....+..|.
T Consensus 15 sP~~Yl~~~~l~~l~~~~ 32 (221)
T d1r4wa_ 15 SPYSWLGFEVLCRYQHLW 32 (221)
T ss_dssp CHHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHHc
Confidence 568999998888777654
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.59 E-value=1.2e+02 Score=13.36 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy4781 9 INSFLTLANLMVMGIVIVVG 28 (83)
Q Consensus 9 ~q~~lt~~kl~~l~~~ii~g 28 (83)
+.++.+..-++.+++++...
T Consensus 19 Fik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 19 FVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444443
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.97 E-value=1.3e+02 Score=13.28 Aligned_cols=20 Identities=5% Similarity=0.213 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy4781 9 INSFLTLANLMVMGIVIVVG 28 (83)
Q Consensus 9 ~q~~lt~~kl~~l~~~ii~g 28 (83)
+.++.+..-++.+++++...
T Consensus 20 Fi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 20 FIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 10
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=6.32 E-value=1e+02 Score=16.87 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=9.5
Q ss_pred HHHhhccHHHHH
Q psy4781 59 CFYAYVGFDKCW 70 (83)
Q Consensus 59 ~~fay~G~~~v~ 70 (83)
.|.+|.|+|.+-
T Consensus 94 Sfv~Y~G~~~ie 105 (123)
T d2r7ka1 94 SFIAYCGLDNVE 105 (123)
T ss_dssp HHHHHHCHHHHH
T ss_pred CeeeeecHHHHH
Confidence 477899999873
Done!