RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4781
         (83 letters)



>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
           membrane, membrane, transmembrane, transport protein;
           HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
           3gi9_C* 3gi8_C
          Length = 444

 Score = 62.3 bits (152), Expect = 2e-13
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
            G K       F+ L  L+++G+ I  G         I       P  +SG++  +A  F
Sbjct: 142 FGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP---DLAPSAVSGMIFASAIFF 198

Query: 61  YAYVGFD 67
            +Y+GF 
Sbjct: 199 LSYMGFG 205


>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
           amino-acid transport, cell inner membrane, cell
           membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
           coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
           3ncy_A
          Length = 445

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 8/67 (11%), Positives = 28/67 (41%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +G K    + +  T+  L+ +  + V G+++ R + ++             + +      
Sbjct: 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTL 201

Query: 61  YAYVGFD 67
           ++++G +
Sbjct: 202 WSFIGVE 208


>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
           glutamate-GABA antiporter, transport protein; 3.10A
           {Escherichia coli} PDB: 4dji_A
          Length = 511

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYY-----GRLDNWINEGGGFLPYGISGVVAGA 56
           G K +A I      A +++   +++            +   ++    F  +   G +   
Sbjct: 148 GTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVF 207

Query: 57  ATCFYAYVGFD 67
                +Y+G +
Sbjct: 208 VAFILSYMGVE 218


>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET:
          FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
          taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H*
          1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H*
          2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H*
          3abm_H* 3ag1_H* 3ag2_H* ...
          Length = 85

 Score = 24.9 bits (54), Expect = 2.2
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 58 TCFYAYVGFDKCWKCLIRIG 77
           C+  Y+ F +C K +   G
Sbjct: 28 NCWQNYLDFHRCEKAMTAKG 47


>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
           substrate, PLP, crystal, complex, hydrolase; HET: PLP;
           1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
           1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
          Length = 338

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 17/64 (26%)

Query: 13  LTLANLMVMGIVIV-VGFYYGRLDNW----------------INEGGGFLPYGISGVVAG 55
           + ++ ++   + +V  GF  G   +W                I  G    P G  G V  
Sbjct: 116 IQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGF 175

Query: 56  AATC 59
           A   
Sbjct: 176 AEEV 179


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.148    0.487 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,387,806
Number of extensions: 75250
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 13
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.7 bits)