RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4781
         (83 letters)



>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
           basidiomycete (Phanerochaete chrysosporium) [TaxId:
           5306]}
          Length = 343

 Score = 24.6 bits (53), Expect = 1.8
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 27  VGFYYGRLDNWINEGGGFLPY 47
           + F+ GR         G +P 
Sbjct: 126 MNFFTGRKPATQPAPDGLVPE 146


>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 79

 Score = 23.6 bits (51), Expect = 2.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 59 CFYAYVGFDKCWKCLIRIG 77
          C+  Y+ F +C K +   G
Sbjct: 23 CWQNYLDFHRCEKAMTAKG 41


>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
           herpesvirus [TaxId: 37296]}
          Length = 146

 Score = 22.1 bits (47), Expect = 9.5
 Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 1/28 (3%)

Query: 17  NLMVMGIVIVVGFYYGR-LDNWINEGGG 43
           +L    + ++  + Y      W    GG
Sbjct: 106 HLRDFALAVLPAYAYEAIGPQWFRARGG 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.148    0.487 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 339,972
Number of extensions: 13809
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 7
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)