Query psy4784
Match_columns 78
No_of_seqs 31 out of 33
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 17:35:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ehu_C Corticoliberin; G prote 55.3 5.2 0.00018 20.0 1.2 10 3-12 11-20 (21)
2 2o6n_A RH4B designed peptide; 39.0 17 0.00058 20.0 1.7 13 6-18 20-32 (35)
3 1wt6_A Myotonin-protein kinase 37.4 28 0.00095 22.2 2.8 19 2-20 51-69 (81)
4 1r48_A Proline/betaine transpo 37.0 24 0.00082 18.8 2.1 15 9-23 17-31 (33)
5 2c5k_P Vacuolar protein sortin 27.8 33 0.0011 17.8 1.6 12 11-22 7-18 (26)
6 2ghj_A 50S ribosomal protein L 27.5 20 0.00069 24.0 0.9 11 4-14 88-98 (118)
7 2ftc_L MRPL20 protein; mitocho 27.1 22 0.00076 23.8 1.1 12 3-14 89-100 (118)
8 2bzb_A Conserved domain protei 25.7 61 0.0021 19.1 2.8 18 5-22 3-20 (62)
9 3v2d_U 50S ribosomal protein L 25.5 23 0.00078 23.7 0.9 11 4-14 90-100 (118)
10 3r8s_Q 50S ribosomal protein L 25.3 23 0.0008 23.7 0.9 11 4-14 89-99 (117)
11 3twe_A Alpha4H; unknown functi 24.6 63 0.0021 16.8 2.4 16 6-21 7-22 (27)
12 2c0s_A Conserved domain protei 21.5 82 0.0028 18.6 2.8 18 5-22 3-20 (64)
13 2rm9_A Astressin2B; CRF ligand 20.5 34 0.0012 18.8 0.9 10 3-12 24-33 (34)
No 1
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=55.30 E-value=5.2 Score=19.98 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=8.2
Q ss_pred hhHHHHHHHH
Q psy4784 3 LQNRKILEDL 12 (78)
Q Consensus 3 ~~nrkILeeL 12 (78)
..||||||+.
T Consensus 11 ~~NRk~md~~ 20 (21)
T 3ehu_C 11 HSNRKLMEII 20 (26)
T ss_pred HHhHHHHHhh
Confidence 5799999874
No 2
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=38.99 E-value=17 Score=19.98 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q psy4784 6 RKILEDLQMKKQL 18 (78)
Q Consensus 6 rkILeeL~~kKq~ 18 (78)
..||||+.+-||.
T Consensus 20 eeileeikkakqe 32 (35)
T 2o6n_A 20 EEILEEIKKAKQE 32 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4699999999986
No 3
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.43 E-value=28 Score=22.24 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy4784 2 ELQNRKILEDLQMKKQLLL 20 (78)
Q Consensus 2 e~~nrkILeeL~~kKq~LL 20 (78)
|..|+.+++|+.++|..|-
T Consensus 51 e~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 51 EARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5689999999999888754
No 4
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=36.97 E-value=24 Score=18.79 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcC
Q psy4784 9 LEDLQMKKQLLLKQG 23 (78)
Q Consensus 9 LeeL~~kKq~LL~qg 23 (78)
.+||+.|||+|..+|
T Consensus 17 i~~l~~kr~~l~~qh 31 (33)
T 1r48_A 17 IADLQAKRTRLVQQH 31 (33)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC
Confidence 357888888877664
No 5
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=27.80 E-value=33 Score=17.84 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhc
Q psy4784 11 DLQMKKQLLLKQ 22 (78)
Q Consensus 11 eL~~kKq~LL~q 22 (78)
.+++.||++|+.
T Consensus 7 ~~~KdKR~lLke 18 (26)
T 2c5k_P 7 SLNKDRRLLLRE 18 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred ccChHHHHHHHH
Confidence 368899988864
No 6
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=27.46 E-value=20 Score=23.97 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=9.0
Q ss_pred hHHHHHHHHHH
Q psy4784 4 QNRKILEDLQM 14 (78)
Q Consensus 4 ~nrkILeeL~~ 14 (78)
-|||||.||-.
T Consensus 88 LNRKvLA~lAi 98 (118)
T 2ghj_A 88 LDRKILADMAV 98 (118)
T ss_dssp CCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 48999999854
No 7
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=27.15 E-value=22 Score=23.80 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHH
Q psy4784 3 LQNRKILEDLQM 14 (78)
Q Consensus 3 ~~nrkILeeL~~ 14 (78)
+-|||||.||-.
T Consensus 89 ~LNRKvLa~lAi 100 (118)
T 2ftc_L 89 ELNRKVLADLAI 100 (118)
T ss_pred CccHHHHHHHHH
Confidence 359999999853
No 8
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=25.72 E-value=61 Score=19.10 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy4784 5 NRKILEDLQMKKQLLLKQ 22 (78)
Q Consensus 5 nrkILeeL~~kKq~LL~q 22 (78)
.++++.+|+++|+.|..-
T Consensus 3 ~~~L~~~IE~kR~eL~~l 20 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQL 20 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 378999999999987644
No 9
>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=25.54 E-value=23 Score=23.73 Aligned_cols=11 Identities=45% Similarity=0.604 Sum_probs=9.0
Q ss_pred hHHHHHHHHHH
Q psy4784 4 QNRKILEDLQM 14 (78)
Q Consensus 4 ~nrkILeeL~~ 14 (78)
-|||||.||-.
T Consensus 90 LNRK~La~lAi 100 (118)
T 3v2d_U 90 VDRKNLADLAV 100 (118)
T ss_dssp CCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 48999999854
No 10
>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=25.26 E-value=23 Score=23.66 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=9.0
Q ss_pred hHHHHHHHHHH
Q psy4784 4 QNRKILEDLQM 14 (78)
Q Consensus 4 ~nrkILeeL~~ 14 (78)
-|||||.||-.
T Consensus 89 LNRK~La~lAi 99 (117)
T 3r8s_Q 89 IDRKILADIAV 99 (117)
T ss_dssp CCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 58999999854
No 11
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.58 E-value=63 Score=16.76 Aligned_cols=16 Identities=50% Similarity=0.432 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4784 6 RKILEDLQMKKQLLLK 21 (78)
Q Consensus 6 rkILeeL~~kKq~LL~ 21 (78)
-|-|||||++-++|-+
T Consensus 7 ykeledlqerlrklrk 22 (27)
T 3twe_A 7 YKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999988776544
No 12
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.51 E-value=82 Score=18.63 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy4784 5 NRKILEDLQMKKQLLLKQ 22 (78)
Q Consensus 5 nrkILeeL~~kKq~LL~q 22 (78)
.++++.+|+++|+.|..-
T Consensus 3 ~~~L~~~IE~kR~eL~~l 20 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYL 20 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999999987654
No 13
>2rm9_A Astressin2B; CRF ligand, sauvagine, urocortins, urotensins, CRF receptors, neuropeptide; HET: DPN 2ML NLE; NMR {Synthetic}
Probab=20.51 E-value=34 Score=18.76 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=8.1
Q ss_pred hhHHHHHHHH
Q psy4784 3 LQNRKILEDL 12 (78)
Q Consensus 3 ~~nrkILeeL 12 (78)
..|||+|+++
T Consensus 24 ~~NR~l~d~~ 33 (34)
T 2rm9_A 24 ENNKLLLDXI 33 (34)
T ss_dssp TTTHHHHHHC
T ss_pred HHhHHHHHhc
Confidence 4799999874
Done!