Query psy4784
Match_columns 78
No_of_seqs 31 out of 33
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 17:36:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vnud1 b.40.4.5 (D:400-494) E 36.2 6.9 0.0005 22.8 1.4 22 50-71 17-38 (95)
2 d2cyya1 a.4.5.32 (A:5-64) Puta 35.6 11 0.00079 19.8 2.0 14 1-14 1-14 (60)
3 d2cg4a1 a.4.5.32 (A:4-66) Regu 32.5 13 0.00094 19.8 2.0 15 1-15 3-17 (63)
4 d2cfxa1 a.4.5.32 (A:1-63) Tran 27.9 17 0.0013 19.3 2.0 14 1-14 3-16 (63)
5 d1ju3a1 b.18.1.13 (A:352-574) 21.8 8.7 0.00064 24.6 -0.1 8 68-75 216-223 (223)
6 d1yf2a2 d.287.1.2 (A:221-425) 21.4 39 0.0029 19.1 2.9 19 4-22 177-195 (205)
7 d1gyza_ a.144.2.1 (A:) Ribosom 19.1 4.3 0.00031 22.9 -1.9 11 4-14 30-40 (60)
8 d1uhka1 a.39.1.5 (A:3-189) Cal 16.8 11 0.00079 22.0 -0.5 14 56-69 169-186 (187)
9 d1nlqa_ b.121.3.1 (A:) Chromat 16.5 23 0.0017 20.6 1.0 10 53-62 96-105 (105)
10 d1i1ga1 a.4.5.32 (A:2-61) LprA 16.5 35 0.0025 17.8 1.7 14 1-14 1-14 (60)
No 1
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=36.25 E-value=6.9 Score=22.80 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=16.1
Q ss_pred hhhccceeeeecCCCCCccccc
Q psy4784 50 ANAQSTGFYITQDSSFGNIVLP 71 (78)
Q Consensus 50 a~s~s~GfFI~QDS~fGN~iLP 71 (78)
+++...+||||.|.-+-..++|
T Consensus 17 ~~~~~~~~v~P~d~rip~i~I~ 38 (95)
T d2vnud1 17 SSSTQNVFVILMDKCLPKVRIR 38 (95)
T ss_dssp CCSCEEEEEEESSTTSCCEEEE
T ss_pred CCCcceEEEEECCCCCCceecc
Confidence 3455678999999998665544
No 2
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=35.59 E-value=11 Score=19.83 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=11.0
Q ss_pred ChhhHHHHHHHHHH
Q psy4784 1 MELQNRKILEDLQM 14 (78)
Q Consensus 1 ~e~~nrkILeeL~~ 14 (78)
|.+..++||++|++
T Consensus 1 lD~~D~~Il~~L~~ 14 (60)
T d2cyya1 1 LDEIDKKIIKILQN 14 (60)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45678899998876
No 3
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=32.55 E-value=13 Score=19.75 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=11.3
Q ss_pred ChhhHHHHHHHHHHH
Q psy4784 1 MELQNRKILEDLQMK 15 (78)
Q Consensus 1 ~e~~nrkILeeL~~k 15 (78)
|.+..++||++|++.
T Consensus 3 lD~~D~~IL~~L~~~ 17 (63)
T d2cg4a1 3 IDNLDRGILEALMGN 17 (63)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHc
Confidence 456788999988754
No 4
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=27.88 E-value=17 Score=19.31 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=10.6
Q ss_pred ChhhHHHHHHHHHH
Q psy4784 1 MELQNRKILEDLQM 14 (78)
Q Consensus 1 ~e~~nrkILeeL~~ 14 (78)
|.+..++||+.|+.
T Consensus 3 lD~~D~~IL~~L~~ 16 (63)
T d2cfxa1 3 LDQIDLNIIEELKK 16 (63)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45678899988764
No 5
>d1ju3a1 b.18.1.13 (A:352-574) Bacterial cocaine esterase, C-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]}
Probab=21.82 E-value=8.7 Score=24.57 Aligned_cols=8 Identities=63% Similarity=1.207 Sum_probs=6.7
Q ss_pred cccccccc
Q psy4784 68 IVLPVLPR 75 (78)
Q Consensus 68 ~iLPVlPR 75 (78)
++|||+||
T Consensus 216 L~LPvv~r 223 (223)
T d1ju3a1 216 IVLPIIKR 223 (223)
T ss_dssp EEEEEECC
T ss_pred EEEeeecC
Confidence 67899887
No 6
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=21.38 E-value=39 Score=19.05 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q psy4784 4 QNRKILEDLQMKKQLLLKQ 22 (78)
Q Consensus 4 ~nrkILeeL~~kKq~LL~q 22 (78)
.+++.++.|++.|+-||.+
T Consensus 177 ~~~~~~~~l~~~k~~Ll~~ 195 (205)
T d1yf2a2 177 LKKQKKEKLQRMKKKIMEL 195 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666677666666644
No 7
>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]}
Probab=19.15 E-value=4.3 Score=22.90 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=7.8
Q ss_pred hHHHHHHHHHH
Q psy4784 4 QNRKILEDLQM 14 (78)
Q Consensus 4 ~nrkILeeL~~ 14 (78)
-|||+|.||-.
T Consensus 30 LnRK~La~LAi 40 (60)
T d1gyza_ 30 LDRKILADMAV 40 (60)
T ss_dssp CCSSSSHHHHH
T ss_pred CcHHHHHHHHh
Confidence 37888888753
No 8
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}
Probab=16.78 E-value=11 Score=21.97 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=9.2
Q ss_pred eeeeecC----CCCCccc
Q psy4784 56 GFYITQD----SSFGNIV 69 (78)
Q Consensus 56 GfFI~QD----S~fGN~i 69 (78)
+||+.+| +.|||.|
T Consensus 169 ~~~~~~d~~~~~~~~~~~ 186 (187)
T d1uhka1 169 GFWYTMDPACEKLYGGAV 186 (187)
T ss_dssp HHHTTCCGGGTTTTTTSC
T ss_pred HhcccCCcccccccCCCC
Confidence 4666654 6777766
No 9
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1, Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=16.53 E-value=23 Score=20.57 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=7.1
Q ss_pred ccceeeeecC
Q psy4784 53 QSTGFYITQD 62 (78)
Q Consensus 53 ~s~GfFI~QD 62 (78)
|=+||||..|
T Consensus 96 hlsGy~i~dd 105 (105)
T d1nlqa_ 96 YIHGHNIKDD 105 (105)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEccCC
Confidence 4578888776
No 10
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=16.51 E-value=35 Score=17.78 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=10.1
Q ss_pred ChhhHHHHHHHHHH
Q psy4784 1 MELQNRKILEDLQM 14 (78)
Q Consensus 1 ~e~~nrkILeeL~~ 14 (78)
|.+..||||..|++
T Consensus 1 lD~~D~kIl~~L~~ 14 (60)
T d1i1ga1 1 IDERDKIILEILEK 14 (60)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44677888887765
Done!