RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4784
         (78 letters)



>gnl|CDD|219100 pfam06597, Clostridium_P47, Clostridium P-47 protein.  This family
           consists of several P-47 proteins from various
           Clostridium species as well as two related sequences
           from Pseudomonas putida. The function of this family is
           unknown.
          Length = 449

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 36  SADQLQHQRAALITANAQSTGFYITQDSSFGNIVLPVLPR 75
            +  LQHQ          S GF I++     N++LP LP 
Sbjct: 216 ISKLLQHQIDPNAIPENSSAGFLISEQLFLKNVLLPGLPS 255


>gnl|CDD|173919 cd02168, NMNAT_Nudix, Nicotinamide/nicotinate mononucleotide
          adenylyltransferase of bifunctional proteins, also
          containing a Nudix hydrolase domain.  N-terminal NMNAT
          (Nicotinamide/nicotinate mononucleotide
          adenylyltransferase) domain of a novel bifunctional
          enzyme endowed with NMN adenylyltransferase and Nudix
          hydrolase activities.  This domain is highly homologous
          to the archeal NMN adenyltransferase that catalyzes NAD
          synthesis from NMN and ATP.  NMNAT is an essential
          enzyme in the biosynthesis of NAD(+) and NADP(+).
          Nicotinamide-nucleotide adenylyltransferase synthesizes
          NAD via the salvage pathway, while
          nicotinate-nucleotide adenylyltransferase synthesizes
          the immediate precursor of NAD via the de novo pathway.
           The C-terminal domain of this enzyme shares homology
          with the archaeal ADP-ribose pyrophosphatase, a member
          of the 'Nudix' hydrolase family.
          Length = 181

 Score = 25.4 bits (56), Expect = 3.2
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 8  ILEDLQMKKQLLLKQGAAPNSPPISNSMSADQLQHQRAALITANAQSTG 56
          +L  L+  K++++  G+A  +  I N  ++     +R  +I A     G
Sbjct: 19 VLIALEKAKKVIILIGSARTARNIKNPWTS----EEREVMIEAALSDAG 63


>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
           alpha; Validated.
          Length = 1220

 Score = 25.3 bits (56), Expect = 4.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 18  LLLKQGAAPNSP 29
           +L  Q  APNSP
Sbjct: 143 MLATQMVAPNSP 154


>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
          Length = 444

 Score = 24.6 bits (54), Expect = 7.4
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 3   LQNRKILEDLQMKKQLLLKQGAAPNSPPISN 33
           L+   I  D     +L++  GA P  PPI N
Sbjct: 94  LKTGSIFND--TYDKLMIATGARPIIPPIKN 122


>gnl|CDD|234397 TIGR03920, T7SS_EccD, type VII secretion integral membrane
          protein EccD.  Members of this family are EccD, a
          component of actinobacterial type VII secretion systems
          (T7SS) with ten to eleven predicted transmembrane helix
          regions [Protein fate, Protein and peptide secretion
          and trafficking].
          Length = 431

 Score = 24.3 bits (53), Expect = 8.1
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 24 AAPNSPPISNSMSADQLQ 41
          A P  PP+   +S D+  
Sbjct: 51 ARPGGPPLDLDLSLDEAG 68


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,785,868
Number of extensions: 274733
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 8
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)