RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4784
         (78 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.076
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%)

Query: 10 EDLQMKK-QLLLKQGAAPNSPP---ISNSM 35
          E   +KK Q  LK   A +S P   I  +M
Sbjct: 18 EKQALKKLQASLKL-YADDSAPALAIKATM 46


>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
          structural genomics, JCSG; HET: MSE LLP; 1.70A
          {Eubacterium rectale}
          Length = 376

 Score = 24.1 bits (53), Expect = 5.9
 Identities = 5/42 (11%), Positives = 13/42 (30%)

Query: 1  MELQNRKILEDLQMKKQLLLKQGAAPNSPPISNSMSADQLQH 42
           ++ +    E+L  +  L    G   +S  +    +      
Sbjct: 4  DKIHHHHHHENLYFQGMLNFTVGPVMSSEEVRAIGAEQVPYF 45


>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom
          JCSG, PSI, protein structure initiative, joint center
          for S genomics; 2.00A {Thermotoga maritima} SCOP:
          c.82.1.1
          Length = 427

 Score = 23.7 bits (52), Expect = 8.7
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 37 ADQLQHQRAALITANAQ 53
          A++L  +R  ++ AN  
Sbjct: 46 AEKLDERRKEILEANRI 62


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0768    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,050,741
Number of extensions: 44445
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 3
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)