RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4784
         (78 letters)



>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
          {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
          Length = 377

 Score = 25.1 bits (53), Expect = 1.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 4  QNRKILEDLQMKKQLLLKQGAAPNSPPISNSMSADQLQH 42
            R  LE L++  +LLL  G +   P +  +M+   + H
Sbjct: 6  NQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVGH 44


>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 23.9 bits (50), Expect = 2.8
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 7  KILEDLQMKKQLLLKQGAAPNSPPISNSMSADQLQH 42
           +L+ L +  QLLL  G +   P I  +     +  
Sbjct: 10 ALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGS 45


>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein
           5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 175

 Score = 22.4 bits (47), Expect = 8.1
 Identities = 6/38 (15%), Positives = 15/38 (39%)

Query: 8   ILEDLQMKKQLLLKQGAAPNSPPISNSMSADQLQHQRA 45
           ++++L  +    +  G      P    +S + +  QR 
Sbjct: 135 LVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRG 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0401    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 245,041
Number of extensions: 7587
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)