Query psy4795
Match_columns 285
No_of_seqs 303 out of 1280
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:50:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14995 methyl viologen resis 99.6 2.9E-13 6.3E-18 132.1 23.4 194 14-211 192-412 (495)
2 KOG3098|consensus 99.5 2.3E-13 5.1E-18 131.1 15.7 153 95-247 280-449 (461)
3 PRK10504 putative transporter; 99.5 3.5E-12 7.6E-17 122.9 21.2 127 82-209 283-412 (471)
4 TIGR00892 2A0113 monocarboxyla 99.5 4.1E-12 8.9E-17 122.9 19.8 147 83-235 264-422 (455)
5 COG2814 AraJ Arabinose efflux 99.5 2.3E-11 5E-16 115.3 23.5 192 18-213 139-362 (394)
6 TIGR00711 efflux_EmrB drug res 99.5 5.8E-12 1.3E-16 121.2 19.5 194 14-211 187-409 (485)
7 PRK03893 putative sialic acid 99.4 3.3E-12 7.2E-17 123.6 17.3 129 82-212 297-428 (496)
8 PRK10642 proline/glycine betai 99.4 2.5E-11 5.4E-16 118.3 22.3 127 82-210 272-402 (490)
9 PRK10489 enterobactin exporter 99.4 3.8E-11 8.2E-16 114.1 22.6 190 20-213 150-375 (417)
10 TIGR00924 yjdL_sub1_fam amino 99.4 1.8E-12 3.9E-17 126.4 13.6 155 75-233 25-192 (475)
11 TIGR00893 2A0114 d-galactonate 99.4 1.4E-12 3.1E-17 119.9 11.6 122 85-210 18-142 (399)
12 PRK15011 sugar efflux transpor 99.4 7.1E-11 1.5E-15 111.6 23.3 190 19-212 146-366 (393)
13 PRK03545 putative arabinose tr 99.4 6.9E-11 1.5E-15 111.3 22.3 207 19-229 136-376 (390)
14 PRK15402 multidrug efflux syst 99.4 7.2E-11 1.6E-15 111.7 22.3 130 83-212 238-370 (406)
15 PRK10207 dipeptide/tripeptide 99.4 5.6E-12 1.2E-16 123.5 14.7 156 74-232 28-193 (489)
16 PF07690 MFS_1: Major Facilita 99.4 3.5E-12 7.5E-17 116.5 11.7 140 84-227 20-166 (352)
17 PRK05122 major facilitator sup 99.4 8.6E-11 1.9E-15 110.6 20.7 124 83-211 239-363 (399)
18 PRK10054 putative transporter; 99.4 1.1E-11 2.4E-16 117.6 14.5 127 80-210 27-156 (395)
19 PRK11646 multidrug resistance 99.4 1.4E-11 3.1E-16 117.0 15.3 128 79-210 29-159 (400)
20 TIGR00881 2A0104 phosphoglycer 99.4 1.8E-12 3.8E-17 119.3 8.8 120 86-209 20-143 (379)
21 PRK09874 drug efflux system pr 99.4 1.4E-10 3E-15 109.0 21.7 189 19-211 145-372 (408)
22 TIGR00895 2A0115 benzoate tran 99.4 7.8E-12 1.7E-16 115.9 12.8 120 88-211 44-166 (398)
23 PRK11551 putative 3-hydroxyphe 99.4 9.2E-11 2E-15 110.6 20.0 124 83-211 243-369 (406)
24 TIGR00900 2A0121 H+ Antiporter 99.3 3.6E-11 7.8E-16 110.2 16.5 118 94-211 34-153 (365)
25 PRK03699 putative transporter; 99.3 3.4E-10 7.4E-15 107.0 23.5 149 81-233 226-380 (394)
26 PRK09556 uhpT sugar phosphate 99.3 9.2E-11 2E-15 113.5 19.9 151 82-234 280-450 (467)
27 TIGR00891 2A0112 putative sial 99.3 2.4E-11 5.3E-16 113.2 15.3 120 87-210 38-160 (405)
28 TIGR00899 2A0120 sugar efflux 99.3 1.7E-10 3.7E-15 106.9 20.6 207 19-229 128-370 (375)
29 TIGR02332 HpaX 4-hydroxyphenyl 99.3 8.6E-12 1.9E-16 119.0 12.0 121 86-210 33-156 (412)
30 cd06174 MFS The Major Facilita 99.3 7.6E-11 1.6E-15 106.9 17.7 206 19-228 126-347 (352)
31 PRK15462 dipeptide/tripeptide 99.3 3.2E-11 6.9E-16 118.1 15.9 155 74-231 23-187 (493)
32 PRK12382 putative transporter; 99.3 2.5E-10 5.3E-15 107.4 20.9 124 83-211 239-363 (392)
33 PRK12382 putative transporter; 99.3 4.1E-11 9E-16 112.7 15.0 131 81-211 36-173 (392)
34 TIGR00900 2A0121 H+ Antiporter 99.3 3E-10 6.6E-15 104.0 19.4 190 19-211 131-362 (365)
35 TIGR00898 2A0119 cation transp 99.3 7.5E-11 1.6E-15 114.7 16.1 113 94-210 127-240 (505)
36 TIGR00886 2A0108 nitrite extru 99.3 3.1E-11 6.8E-16 111.6 12.5 128 80-211 21-151 (366)
37 TIGR00887 2A0109 phosphate:H+ 99.3 1.2E-10 2.7E-15 113.7 17.3 115 94-209 56-174 (502)
38 PRK09952 shikimate transporter 99.3 4.7E-10 1E-14 107.9 20.9 150 82-231 272-431 (438)
39 TIGR00890 2A0111 Oxalate/Forma 99.3 2.4E-11 5.2E-16 111.7 11.4 119 86-208 28-148 (377)
40 PRK09584 tppB putative tripept 99.3 8.8E-11 1.9E-15 115.3 16.0 155 77-234 38-202 (500)
41 PRK12307 putative sialic acid 99.3 3.5E-10 7.6E-15 107.3 19.2 128 83-213 254-384 (426)
42 PRK11102 bicyclomycin/multidru 99.3 1.3E-10 2.9E-15 108.2 15.7 124 83-211 14-140 (377)
43 PRK05122 major facilitator sup 99.3 3.5E-11 7.6E-16 113.3 11.8 130 82-211 37-173 (399)
44 TIGR00889 2A0110 nucleoside tr 99.3 5.6E-10 1.2E-14 106.9 20.2 119 94-212 251-371 (418)
45 TIGR00902 2A0127 phenyl propri 99.3 1.2E-09 2.7E-14 102.8 21.9 205 18-228 130-371 (382)
46 TIGR00879 SP MFS transporter, 99.2 7.5E-11 1.6E-15 111.5 12.8 113 93-206 70-183 (481)
47 PRK10213 nepI ribonucleoside t 99.2 1.4E-10 3.1E-15 110.0 14.7 119 89-211 48-169 (394)
48 PRK11195 lysophospholipid tran 99.2 1.4E-09 3.1E-14 103.1 21.3 121 84-209 229-353 (393)
49 PRK03633 putative MFS family t 99.2 1.4E-09 3E-14 102.2 21.0 124 82-213 222-348 (381)
50 TIGR00710 efflux_Bcr_CflA drug 99.2 1.1E-10 2.4E-15 108.4 13.3 119 89-211 33-154 (385)
51 PRK10091 MFS transport protein 99.2 2.3E-09 5.1E-14 100.8 22.3 188 22-212 133-350 (382)
52 KOG1330|consensus 99.2 6E-13 1.3E-17 126.8 -2.2 131 70-209 47-180 (493)
53 TIGR00711 efflux_EmrB drug res 99.2 6.5E-11 1.4E-15 113.9 11.7 120 88-211 29-151 (485)
54 PRK11663 regulatory protein Uh 99.2 1.4E-10 3.1E-15 111.2 13.7 123 83-210 46-171 (434)
55 PRK03545 putative arabinose tr 99.2 1.4E-10 3.1E-15 109.1 13.5 119 88-210 36-157 (390)
56 PRK09528 lacY galactoside perm 99.2 1.7E-09 3.7E-14 103.0 20.9 115 94-212 262-378 (420)
57 PRK11273 glpT sn-glycerol-3-ph 99.2 2.3E-09 5E-14 103.4 21.9 160 82-243 275-445 (452)
58 PRK09705 cynX putative cyanate 99.2 2.3E-10 4.9E-15 108.4 14.6 119 89-211 37-157 (393)
59 PRK11646 multidrug resistance 99.2 3.3E-09 7.2E-14 100.8 22.6 190 19-213 138-360 (400)
60 PF05977 MFS_3: Transmembrane 99.2 1.7E-09 3.7E-14 106.8 21.2 126 84-213 242-370 (524)
61 PRK12307 putative sialic acid 99.2 1.3E-10 2.9E-15 110.1 13.0 120 86-209 43-165 (426)
62 TIGR00891 2A0112 putative sial 99.2 1.1E-09 2.3E-14 102.2 18.6 129 83-214 261-392 (405)
63 PRK10133 L-fucose transporter; 99.2 4.8E-10 1E-14 108.1 16.7 125 82-208 48-175 (438)
64 PRK11043 putative transporter; 99.2 3.5E-09 7.6E-14 99.8 22.1 191 20-211 134-356 (401)
65 TIGR00883 2A0106 metabolite-pr 99.2 1.2E-09 2.6E-14 100.9 18.4 130 82-212 241-375 (394)
66 TIGR00893 2A0114 d-galactonate 99.2 2.7E-09 5.7E-14 98.1 20.6 147 82-229 237-395 (399)
67 PF06609 TRI12: Fungal trichot 99.2 1.5E-09 3.3E-14 108.1 20.1 193 13-208 237-463 (599)
68 PRK15075 citrate-proton sympor 99.2 2.2E-09 4.8E-14 102.8 20.7 130 82-211 260-393 (434)
69 TIGR00792 gph sugar (Glycoside 99.2 3.2E-09 7E-14 100.9 21.3 124 84-210 246-378 (437)
70 TIGR00710 efflux_Bcr_CflA drug 99.2 4.8E-09 1E-13 97.4 22.0 188 19-206 132-356 (385)
71 PRK11551 putative 3-hydroxyphe 99.2 5.9E-10 1.3E-14 105.1 15.8 118 89-210 43-163 (406)
72 TIGR00890 2A0111 Oxalate/Forma 99.2 2.3E-09 5E-14 98.4 19.3 120 90-211 234-356 (377)
73 TIGR00885 fucP L-fucose:H+ sym 99.2 2.8E-10 6E-15 108.9 13.5 121 88-209 30-153 (410)
74 PRK11128 putative 3-phenylprop 99.2 5.5E-09 1.2E-13 98.3 22.0 203 21-228 133-371 (382)
75 TIGR00896 CynX cyanate transpo 99.2 5.5E-10 1.2E-14 103.6 15.0 118 88-210 27-146 (355)
76 PRK11273 glpT sn-glycerol-3-ph 99.2 5.6E-10 1.2E-14 107.6 15.4 119 86-205 54-176 (452)
77 PLN00028 nitrate transmembrane 99.2 3E-09 6.4E-14 103.6 20.4 147 83-233 275-433 (476)
78 TIGR00712 glpT glycerol-3-phos 99.2 5.3E-10 1.2E-14 107.3 15.0 117 92-208 57-176 (438)
79 KOG3097|consensus 99.2 6.8E-11 1.5E-15 108.4 8.1 98 77-174 293-390 (390)
80 PRK11010 ampG muropeptide tran 99.2 6.9E-09 1.5E-13 101.6 22.9 193 19-211 146-377 (491)
81 PRK10406 alpha-ketoglutarate t 99.2 5E-09 1.1E-13 100.4 21.2 128 82-209 265-396 (432)
82 PRK10077 xylE D-xylose transpo 99.2 2.6E-10 5.7E-15 109.8 12.3 115 94-208 55-178 (479)
83 TIGR01299 synapt_SV2 synaptic 99.2 2E-09 4.3E-14 110.2 19.3 119 86-208 192-313 (742)
84 PRK10473 multidrug efflux syst 99.2 4.6E-10 1E-14 105.5 13.6 117 90-210 32-151 (392)
85 PRK11663 regulatory protein Uh 99.2 7.2E-09 1.6E-13 99.4 22.0 128 83-212 266-399 (434)
86 PRK10429 melibiose:sodium symp 99.2 8.7E-09 1.9E-13 100.1 22.7 126 84-209 255-390 (473)
87 PRK11102 bicyclomycin/multidru 99.2 5.8E-09 1.3E-13 97.1 20.5 188 20-207 119-344 (377)
88 TIGR00897 2A0118 polyol permea 99.2 1.2E-08 2.5E-13 96.9 22.7 130 82-213 244-377 (402)
89 TIGR00901 2A0125 AmpG-related 99.1 2E-09 4.4E-14 99.7 17.2 178 19-197 122-356 (356)
90 PRK10473 multidrug efflux syst 99.1 9.6E-09 2.1E-13 96.6 21.8 123 84-212 227-353 (392)
91 PRK06814 acylglycerophosphoeth 99.1 4.5E-09 9.8E-14 112.1 21.9 194 17-210 145-394 (1140)
92 PRK10504 putative transporter; 99.1 6.2E-10 1.3E-14 107.3 13.4 125 81-210 31-158 (471)
93 PRK11043 putative transporter; 99.1 8.1E-10 1.7E-14 104.2 13.9 120 88-211 33-155 (401)
94 PRK11195 lysophospholipid tran 99.1 3.3E-10 7.2E-15 107.4 11.3 112 94-212 38-150 (393)
95 PRK10213 nepI ribonucleoside t 99.1 1.4E-08 3.1E-13 96.3 22.5 190 18-212 146-366 (394)
96 cd06174 MFS The Major Facilita 99.1 1.4E-09 3.1E-14 98.6 14.8 114 94-211 34-148 (352)
97 PRK11652 emrD multidrug resist 99.1 1.1E-08 2.3E-13 96.3 21.3 140 84-224 231-372 (394)
98 PRK03633 putative MFS family t 99.1 4.5E-10 9.7E-15 105.6 11.8 126 81-211 27-155 (381)
99 PRK10091 MFS transport protein 99.1 5.6E-10 1.2E-14 105.0 12.5 119 89-211 31-152 (382)
100 TIGR00882 2A0105 oligosacchari 99.1 2.5E-10 5.3E-15 107.8 10.1 130 80-210 22-157 (396)
101 TIGR00897 2A0118 polyol permea 99.1 1.4E-09 3.1E-14 103.1 15.3 125 84-209 37-165 (402)
102 PRK15403 multidrug efflux syst 99.1 1E-09 2.2E-14 104.8 13.7 119 89-211 44-165 (413)
103 PRK03893 putative sialic acid 99.1 1E-09 2.2E-14 106.3 13.8 120 87-210 46-168 (496)
104 PRK09705 cynX putative cyanate 99.1 1.5E-08 3.3E-13 95.9 21.5 126 82-213 227-356 (393)
105 PF11700 ATG22: Vacuole efflux 99.1 8.6E-09 1.9E-13 100.8 20.2 152 84-235 305-470 (477)
106 PRK10489 enterobactin exporter 99.1 9.4E-10 2E-14 104.5 13.2 126 84-210 41-170 (417)
107 TIGR00880 2_A_01_02 Multidrug 99.1 2.3E-10 5.1E-15 90.1 7.6 108 100-211 4-112 (141)
108 TIGR02718 sider_RhtX_FptX side 99.1 2.3E-08 5E-13 94.1 22.4 190 22-212 139-366 (390)
109 PRK11902 ampG muropeptide tran 99.1 3.1E-08 6.7E-13 93.8 23.3 192 18-212 132-365 (402)
110 PRK09874 drug efflux system pr 99.1 2.5E-09 5.4E-14 100.5 15.7 124 81-210 35-166 (408)
111 TIGR00895 2A0115 benzoate tran 99.1 4.9E-09 1.1E-13 97.1 17.1 120 86-209 275-397 (398)
112 TIGR00879 SP MFS transporter, 99.1 1E-08 2.2E-13 97.0 18.7 122 90-211 313-444 (481)
113 PF07690 MFS_1: Major Facilita 99.1 1.8E-09 3.9E-14 98.6 13.1 185 18-203 123-352 (352)
114 TIGR00899 2A0120 sugar efflux 99.1 2.9E-09 6.4E-14 98.6 14.5 127 81-211 18-150 (375)
115 PRK10077 xylE D-xylose transpo 99.1 1.2E-08 2.6E-13 98.2 19.2 115 95-209 307-423 (479)
116 PRK14995 methyl viologen resis 99.1 1.4E-09 3.1E-14 106.2 12.8 120 88-211 33-156 (495)
117 KOG2615|consensus 99.1 2.8E-10 6.1E-15 106.5 7.2 113 94-211 68-181 (451)
118 PRK11652 emrD multidrug resist 99.1 2.4E-09 5.2E-14 100.8 13.5 119 89-211 36-157 (394)
119 KOG3097|consensus 99.1 1.4E-10 3.1E-15 106.3 4.9 81 2-82 296-376 (390)
120 PRK03699 putative transporter; 99.1 2.4E-09 5.3E-14 101.1 13.3 117 89-209 35-154 (394)
121 PRK09556 uhpT sugar phosphate 99.1 6.3E-10 1.4E-14 107.7 9.5 122 88-209 56-181 (467)
122 TIGR00894 2A0114euk Na(+)-depe 99.0 7.9E-10 1.7E-14 106.6 9.8 120 91-212 71-193 (465)
123 KOG0255|consensus 99.0 8.9E-09 1.9E-13 101.0 17.3 120 94-218 118-238 (521)
124 PF05977 MFS_3: Transmembrane 99.0 3.8E-09 8.2E-14 104.4 14.5 118 94-211 45-164 (524)
125 PRK08633 2-acyl-glycerophospho 99.0 1.6E-09 3.5E-14 115.1 12.6 117 95-212 48-165 (1146)
126 PRK09848 glucuronide transport 99.0 2.3E-08 4.9E-13 96.2 19.1 124 84-209 252-385 (448)
127 PRK08633 2-acyl-glycerophospho 99.0 5E-08 1.1E-12 103.8 23.5 124 83-210 255-382 (1146)
128 PRK15402 multidrug efflux syst 99.0 2.7E-09 5.9E-14 100.9 12.4 118 89-210 41-161 (406)
129 TIGR01301 GPH_sucrose GPH fami 99.0 5.9E-09 1.3E-13 101.8 14.7 124 84-209 28-175 (477)
130 TIGR00792 gph sugar (Glycoside 99.0 5.2E-09 1.1E-13 99.5 14.0 128 79-207 18-157 (437)
131 PTZ00207 hypothetical protein; 99.0 1.4E-08 3E-13 101.5 17.4 133 80-214 47-184 (591)
132 TIGR00883 2A0106 metabolite-pr 99.0 9.9E-09 2.1E-13 94.8 15.4 104 105-209 46-155 (394)
133 TIGR00903 2A0129 major facilit 99.0 4.5E-09 9.7E-14 99.3 13.1 118 88-210 18-138 (368)
134 PRK10207 dipeptide/tripeptide 99.0 2.1E-08 4.6E-13 98.2 18.0 113 97-209 312-438 (489)
135 PLN00028 nitrate transmembrane 99.0 1.5E-08 3.2E-13 98.7 16.1 119 86-209 61-182 (476)
136 PRK10406 alpha-ketoglutarate t 99.0 1.2E-08 2.6E-13 97.7 14.8 110 99-209 68-183 (432)
137 PRK10642 proline/glycine betai 99.0 1.4E-08 3E-13 99.1 15.2 104 101-208 64-176 (490)
138 PRK06814 acylglycerophosphoeth 99.0 9.2E-09 2E-13 109.8 15.0 115 94-211 52-169 (1140)
139 TIGR00712 glpT glycerol-3-phos 99.0 5.2E-08 1.1E-12 93.5 18.8 148 82-230 273-430 (438)
140 TIGR00892 2A0113 monocarboxyla 99.0 3.3E-09 7.1E-14 102.7 10.6 118 89-210 47-167 (455)
141 PRK15403 multidrug efflux syst 99.0 2.4E-07 5.2E-12 88.5 23.0 191 19-211 143-372 (413)
142 PRK09669 putative symporter Ya 98.9 1.4E-07 3E-12 90.7 21.1 124 84-209 253-385 (444)
143 PRK09528 lacY galactoside perm 98.9 7.3E-09 1.6E-13 98.6 12.1 131 80-211 30-166 (420)
144 COG2271 UhpC Sugar phosphate p 98.9 3.3E-08 7.3E-13 93.9 16.3 157 82-241 274-442 (448)
145 TIGR00894 2A0114euk Na(+)-depe 98.9 4.3E-08 9.3E-13 94.5 16.7 127 82-209 283-419 (465)
146 KOG0254|consensus 98.9 1.5E-08 3.2E-13 99.6 13.5 113 94-210 89-202 (513)
147 PRK15034 nitrate/nitrite trans 98.9 2.8E-08 6.1E-13 96.6 14.9 118 90-208 64-185 (462)
148 COG2271 UhpC Sugar phosphate p 98.9 1.2E-08 2.7E-13 96.8 11.2 117 91-211 61-180 (448)
149 TIGR01299 synapt_SV2 synaptic 98.9 1.6E-08 3.4E-13 103.6 12.9 112 96-211 597-709 (742)
150 PRK10054 putative transporter; 98.9 1.4E-07 3E-12 89.6 18.4 135 95-233 245-381 (395)
151 TIGR00901 2A0125 AmpG-related 98.9 6.5E-08 1.4E-12 89.6 15.8 124 84-211 12-144 (356)
152 PRK11128 putative 3-phenylprop 98.9 2.2E-08 4.8E-13 94.2 12.7 122 82-211 26-153 (382)
153 PRK11462 putative transporter; 98.9 1.6E-06 3.4E-11 84.3 25.2 123 84-208 252-383 (460)
154 PRK09952 shikimate transporter 98.9 3.1E-08 6.7E-13 95.3 12.9 104 104-208 74-183 (438)
155 PF13347 MFS_2: MFS/sugar tran 98.8 5.7E-07 1.2E-11 86.0 21.3 125 83-209 248-381 (428)
156 TIGR00896 CynX cyanate transpo 98.8 4.5E-07 9.8E-12 84.1 19.7 126 82-213 219-349 (355)
157 PRK11902 ampG muropeptide tran 98.8 6.7E-08 1.5E-12 91.5 14.5 126 82-211 21-155 (402)
158 PRK09669 putative symporter Ya 98.8 5.3E-08 1.2E-12 93.6 13.3 126 80-206 29-166 (444)
159 PRK10429 melibiose:sodium symp 98.8 5.4E-08 1.2E-12 94.6 13.4 126 79-205 25-162 (473)
160 TIGR00882 2A0105 oligosacchari 98.8 5.1E-07 1.1E-11 85.1 19.6 125 84-212 239-370 (396)
161 TIGR00898 2A0119 cation transp 98.8 4.7E-07 1E-11 88.0 19.9 108 98-207 359-467 (505)
162 KOG0569|consensus 98.8 3.4E-08 7.4E-13 96.3 11.7 109 97-206 63-172 (485)
163 KOG3764|consensus 98.8 7E-09 1.5E-13 97.7 6.6 136 94-233 106-248 (464)
164 COG2814 AraJ Arabinose efflux 98.8 2.1E-07 4.5E-12 88.5 16.0 146 88-237 40-189 (394)
165 TIGR00788 fbt folate/biopterin 98.8 1.9E-07 4.1E-12 91.0 16.0 188 25-212 167-413 (468)
166 PRK15075 citrate-proton sympor 98.8 1.1E-07 2.4E-12 91.1 14.2 100 106-209 68-176 (434)
167 KOG2504|consensus 98.8 7.7E-08 1.7E-12 94.8 13.3 146 84-234 322-477 (509)
168 COG2223 NarK Nitrate/nitrite t 98.8 6.1E-07 1.3E-11 85.2 18.5 118 82-199 240-362 (417)
169 PF00083 Sugar_tr: Sugar (and 98.8 4.2E-11 9.2E-16 114.5 -9.8 115 94-209 46-161 (451)
170 TIGR00806 rfc RFC reduced fola 98.8 8.5E-08 1.8E-12 93.2 12.8 119 86-209 51-173 (511)
171 PF13347 MFS_2: MFS/sugar tran 98.8 4.2E-08 9.1E-13 93.9 10.6 159 80-238 21-200 (428)
172 TIGR02332 HpaX 4-hydroxyphenyl 98.8 7.3E-07 1.6E-11 85.1 18.5 125 82-210 264-393 (412)
173 COG2211 MelB Na+/melibiose sym 98.8 3.9E-06 8.4E-11 81.5 23.5 123 84-208 260-392 (467)
174 PRK09848 glucuronide transport 98.7 2E-07 4.3E-12 89.6 14.5 154 80-234 28-202 (448)
175 TIGR00881 2A0104 phosphoglycer 98.7 3.8E-07 8.2E-12 83.8 15.7 130 82-212 238-372 (379)
176 KOG2532|consensus 98.7 8.2E-08 1.8E-12 93.6 11.7 147 94-242 73-225 (466)
177 COG2270 Permeases of the major 98.7 3.2E-07 6.8E-12 87.3 15.1 143 86-232 278-428 (438)
178 TIGR00886 2A0108 nitrite extru 98.7 4.5E-07 9.7E-12 83.8 15.9 117 82-198 247-365 (366)
179 TIGR01272 gluP glucose/galacto 98.7 2.3E-06 4.9E-11 79.0 20.3 125 82-212 162-290 (310)
180 PRK15034 nitrate/nitrite trans 98.7 2.2E-06 4.8E-11 83.5 21.1 101 82-182 274-376 (462)
181 TIGR00805 oat sodium-independe 98.7 1.2E-08 2.7E-13 103.0 5.6 123 88-210 60-232 (633)
182 COG3104 PTR2 Dipeptide/tripept 98.7 5.6E-08 1.2E-12 94.0 9.4 149 83-233 44-206 (498)
183 PRK10133 L-fucose transporter; 98.7 3.2E-06 7E-11 81.6 21.2 125 82-212 280-407 (438)
184 TIGR00889 2A0110 nucleoside tr 98.6 1.8E-07 3.9E-12 89.7 10.8 126 81-210 23-154 (418)
185 PRK11462 putative transporter; 98.6 7.3E-07 1.6E-11 86.6 14.6 126 80-206 29-166 (460)
186 TIGR00902 2A0127 phenyl propri 98.6 4.7E-07 1E-11 85.3 12.7 127 81-211 25-153 (382)
187 PRK15011 sugar efflux transpor 98.6 5.9E-07 1.3E-11 84.9 13.0 129 82-214 37-173 (393)
188 COG0738 FucP Fucose permease [ 98.6 4.6E-06 9.9E-11 79.1 17.6 136 68-211 29-165 (422)
189 KOG0252|consensus 98.6 3.7E-07 8E-12 87.7 10.3 114 94-207 84-205 (538)
190 COG2223 NarK Nitrate/nitrite t 98.6 1.9E-06 4.2E-11 81.8 14.9 118 89-209 42-162 (417)
191 TIGR00903 2A0129 major facilit 98.5 2E-05 4.4E-10 74.4 21.1 183 18-208 116-338 (368)
192 KOG0569|consensus 98.5 1.7E-05 3.7E-10 77.5 20.7 112 94-205 305-423 (485)
193 PRK11010 ampG muropeptide tran 98.5 3E-06 6.4E-11 83.1 15.3 128 81-211 33-168 (491)
194 TIGR00926 2A1704 Peptide:H+ sy 98.4 3E-06 6.5E-11 86.0 13.9 128 83-210 10-148 (654)
195 PRK09584 tppB putative tripept 98.4 4.8E-05 1E-09 74.8 21.9 112 96-207 318-439 (500)
196 PF06813 Nodulin-like: Nodulin 98.4 1.7E-06 3.7E-11 77.7 10.6 151 77-229 19-175 (250)
197 TIGR00887 2A0109 phosphate:H+ 98.4 1.6E-06 3.4E-11 84.9 11.2 109 102-211 343-453 (502)
198 KOG2533|consensus 98.4 3.6E-06 7.8E-11 82.7 13.3 55 82-136 295-355 (495)
199 PF06609 TRI12: Fungal trichot 98.4 2.1E-06 4.6E-11 85.9 10.6 142 86-232 69-216 (599)
200 KOG2532|consensus 98.3 2.1E-05 4.5E-10 76.9 16.1 204 26-232 174-446 (466)
201 COG2211 MelB Na+/melibiose sym 98.3 3.3E-05 7.2E-10 75.1 16.7 159 80-239 32-210 (467)
202 PF03825 Nuc_H_symport: Nucleo 98.3 0.00011 2.3E-09 70.5 19.8 128 82-212 229-364 (400)
203 TIGR00924 yjdL_sub1_fam amino 98.3 0.00024 5.1E-09 69.5 22.3 114 96-209 314-440 (475)
204 PF01306 LacY_symp: LacY proto 98.2 2.2E-06 4.7E-11 82.2 6.5 128 81-211 28-163 (412)
205 PF01306 LacY_symp: LacY proto 98.2 9.1E-05 2E-09 71.2 17.0 126 92-221 257-387 (412)
206 KOG4686|consensus 98.2 9.8E-06 2.1E-10 74.0 9.7 120 84-209 288-411 (459)
207 KOG2325|consensus 98.2 5.5E-06 1.2E-10 80.7 8.7 114 94-209 71-188 (488)
208 TIGR02718 sider_RhtX_FptX side 98.2 2.6E-05 5.5E-10 73.4 12.7 125 80-205 21-152 (390)
209 PF03209 PUCC: PUCC protein; 98.1 0.0013 2.8E-08 62.8 23.4 127 86-213 234-364 (403)
210 PF03825 Nuc_H_symport: Nucleo 98.1 2.2E-05 4.7E-10 75.3 10.6 116 82-203 24-142 (400)
211 TIGR00885 fucP L-fucose:H+ sym 98.0 0.0012 2.6E-08 63.2 20.9 110 96-211 271-380 (410)
212 TIGR00788 fbt folate/biopterin 98.0 0.00014 3.1E-09 70.9 13.5 128 82-212 47-184 (468)
213 KOG2504|consensus 98.0 3.2E-05 6.9E-10 76.4 9.0 113 94-210 81-194 (509)
214 KOG0253|consensus 97.9 3.3E-05 7.2E-10 72.8 7.2 141 88-233 105-251 (528)
215 COG0477 ProP Permeases of the 97.9 0.00075 1.6E-08 58.3 15.0 117 94-212 39-158 (338)
216 KOG3764|consensus 97.8 8.4E-05 1.8E-09 70.6 8.6 217 18-238 198-455 (464)
217 KOG2533|consensus 97.8 8.3E-05 1.8E-09 73.2 8.7 116 89-208 74-192 (495)
218 PF05631 DUF791: Protein of un 97.8 0.0017 3.7E-08 61.0 16.8 113 85-202 60-178 (354)
219 PF03209 PUCC: PUCC protein; 97.7 0.00088 1.9E-08 63.9 14.3 110 100-209 20-148 (403)
220 KOG3762|consensus 97.7 0.00017 3.7E-09 70.8 9.6 141 96-240 408-554 (618)
221 PF11700 ATG22: Vacuole efflux 97.7 0.0016 3.4E-08 64.0 16.6 90 94-184 70-159 (477)
222 COG2807 CynX Cyanate permease 97.7 0.0063 1.4E-07 57.4 19.6 183 23-211 141-358 (395)
223 COG2270 Permeases of the major 97.7 8.3E-05 1.8E-09 71.0 7.2 131 73-203 28-168 (438)
224 PTZ00207 hypothetical protein; 97.6 0.00035 7.5E-09 70.2 9.8 139 99-242 396-561 (591)
225 COG2807 CynX Cyanate permease 97.6 0.0013 2.8E-08 61.9 12.8 139 89-232 40-185 (395)
226 PF00854 PTR2: POT family; In 97.5 0.00013 2.9E-09 68.7 4.8 115 125-239 2-129 (372)
227 PF12832 MFS_1_like: MFS_1 lik 97.4 0.00036 7.8E-09 51.3 5.5 51 82-133 22-74 (77)
228 COG0738 FucP Fucose permease [ 97.3 0.021 4.6E-07 54.6 17.6 143 83-233 259-403 (422)
229 PF01770 Folate_carrier: Reduc 97.3 0.008 1.7E-07 57.8 14.4 120 109-233 56-182 (412)
230 TIGR00880 2_A_01_02 Multidrug 97.2 0.0028 6.1E-08 49.2 9.0 122 22-144 4-137 (141)
231 KOG0637|consensus 97.2 0.00013 2.9E-09 70.3 1.5 122 90-212 61-205 (498)
232 KOG0254|consensus 97.1 0.0062 1.3E-07 60.0 12.5 95 97-191 332-436 (513)
233 PF03092 BT1: BT1 family; Int 97.1 0.0085 1.8E-07 58.0 13.2 128 84-212 13-150 (433)
234 KOG1330|consensus 97.1 0.0019 4.1E-08 62.6 8.3 137 97-233 286-448 (493)
235 PRK15462 dipeptide/tripeptide 97.1 0.17 3.6E-06 50.1 22.0 113 96-208 310-436 (493)
236 KOG2816|consensus 97.1 0.0062 1.3E-07 59.6 11.7 103 102-211 70-173 (463)
237 PF05978 UNC-93: Ion channel r 97.1 0.0068 1.5E-07 50.7 10.1 101 101-206 44-145 (156)
238 KOG0253|consensus 97.0 0.0016 3.4E-08 61.8 6.8 126 100-229 387-515 (528)
239 KOG2816|consensus 97.0 0.078 1.7E-06 51.9 18.3 193 17-214 149-394 (463)
240 KOG2563|consensus 96.9 0.0073 1.6E-07 58.4 10.1 117 95-211 302-421 (480)
241 TIGR01272 gluP glucose/galacto 96.8 0.003 6.5E-08 58.2 6.3 62 149-210 8-70 (310)
242 TIGR00939 2a57 Equilibrative N 96.8 0.026 5.7E-07 54.8 13.1 86 98-184 49-138 (437)
243 PF00083 Sugar_tr: Sugar (and 96.7 8.9E-06 1.9E-10 77.8 -11.3 113 99-212 291-411 (451)
244 KOG2615|consensus 96.6 0.031 6.6E-07 53.3 12.0 116 89-208 290-410 (451)
245 KOG2563|consensus 96.6 0.038 8.2E-07 53.6 12.5 118 94-212 79-202 (480)
246 TIGR00805 oat sodium-independe 96.5 0.05 1.1E-06 55.3 13.7 59 82-140 352-415 (633)
247 TIGR00769 AAA ADP/ATP carrier 96.5 0.067 1.4E-06 52.5 13.8 101 107-210 57-189 (472)
248 PF03137 OATP: Organic Anion T 96.4 0.00054 1.2E-08 68.2 -0.9 121 88-208 30-199 (539)
249 KOG0255|consensus 96.2 0.075 1.6E-06 52.1 12.3 112 98-210 354-466 (521)
250 KOG0252|consensus 96.1 0.0092 2E-07 58.0 5.4 123 110-233 364-498 (538)
251 PF03092 BT1: BT1 family; Int 96.1 0.096 2.1E-06 50.7 12.4 119 94-212 255-380 (433)
252 KOG4686|consensus 95.9 0.014 3E-07 53.9 5.4 147 98-245 83-245 (459)
253 KOG1237|consensus 95.7 0.048 1E-06 54.8 8.9 156 85-240 62-252 (571)
254 KOG1479|consensus 95.4 0.32 7E-06 46.7 12.8 133 98-233 60-204 (406)
255 TIGR01301 GPH_sucrose GPH fami 95.3 0.13 2.9E-06 50.5 10.3 112 97-208 307-440 (477)
256 KOG3098|consensus 95.2 0.14 3.1E-06 50.0 9.7 103 95-202 50-154 (461)
257 PF06963 FPN1: Ferroportin1 (F 94.5 1.1 2.3E-05 43.7 14.0 136 84-220 282-426 (432)
258 PRK03612 spermidine synthase; 94.5 0.8 1.7E-05 45.6 13.4 118 95-212 51-171 (521)
259 PF06963 FPN1: Ferroportin1 (F 94.3 3.9 8.5E-05 39.8 17.2 42 96-137 40-81 (432)
260 KOG3626|consensus 93.8 0.058 1.3E-06 55.4 3.6 115 95-209 133-296 (735)
261 PF05631 DUF791: Protein of un 93.6 6.7 0.00015 37.1 21.7 197 8-209 61-306 (354)
262 TIGR00806 rfc RFC reduced fola 93.4 0.14 3.1E-06 50.4 5.5 97 95-195 299-398 (511)
263 KOG3762|consensus 93.4 0.088 1.9E-06 52.3 4.0 65 84-149 35-102 (618)
264 COG3619 Predicted membrane pro 92.6 7 0.00015 34.7 15.4 139 99-237 59-219 (226)
265 PF13000 Acatn: Acetyl-coenzym 91.3 0.73 1.6E-05 45.5 7.5 28 180-207 148-175 (544)
266 COG3104 PTR2 Dipeptide/tripept 91.2 17 0.00036 36.1 17.3 112 96-207 326-451 (498)
267 PF03219 TLC: TLC ATP/ADP tran 91.0 4.8 0.0001 39.9 12.9 101 108-211 73-205 (491)
268 TIGR00939 2a57 Equilibrative N 90.9 2.2 4.8E-05 41.5 10.5 110 98-208 311-430 (437)
269 PF08229 SHR3_chaperone: ER me 90.9 1.9 4.2E-05 37.3 8.9 15 227-241 152-166 (196)
270 PF02487 CLN3: CLN3 protein; 90.7 2.1 4.7E-05 41.2 10.0 81 97-182 62-142 (402)
271 PF12794 MscS_TM: Mechanosensi 90.5 9.6 0.00021 35.8 14.0 40 215-254 230-269 (340)
272 PF06779 DUF1228: Protein of u 89.8 2.8 6.1E-05 31.3 7.9 53 91-143 24-76 (85)
273 TIGR00769 AAA ADP/ATP carrier 88.3 28 0.0006 34.4 21.5 53 156-208 271-325 (472)
274 PF03547 Mem_trans: Membrane t 87.6 1.1 2.4E-05 42.2 5.6 17 105-121 6-22 (385)
275 PRK09412 anaerobic C4-dicarbox 87.5 29 0.00064 33.7 16.1 15 28-45 7-21 (433)
276 PF06679 DUF1180: Protein of u 86.5 0.88 1.9E-05 38.3 3.7 30 213-242 96-125 (163)
277 KOG2325|consensus 86.4 1.2 2.7E-05 43.8 5.3 76 158-233 395-474 (488)
278 PF01528 Herpes_glycop: Herpes 85.2 14 0.00031 35.2 11.6 19 214-232 302-320 (374)
279 PF01733 Nucleoside_tran: Nucl 85.1 0.27 5.9E-06 45.3 0.0 26 158-184 4-29 (309)
280 smart00786 SHR3_chaperone ER m 84.7 1.7 3.8E-05 37.4 4.7 15 227-241 152-166 (196)
281 PF13974 YebO: YebO-like prote 84.6 1 2.2E-05 33.2 2.8 38 217-254 3-43 (80)
282 TIGR00770 Dcu anaerobic c4-dic 83.9 44 0.00096 32.5 15.6 27 158-184 110-136 (430)
283 KOG1479|consensus 83.9 12 0.00026 36.2 10.5 110 95-207 283-400 (406)
284 PF06027 DUF914: Eukaryotic pr 82.5 14 0.0003 34.7 10.3 25 87-111 127-152 (334)
285 PTZ00370 STEVOR; Provisional 82.1 2.8 6.2E-05 38.2 5.2 49 197-245 243-291 (296)
286 TIGR02736 cbb3_Q_epsi cytochro 82.0 2.6 5.7E-05 28.7 3.8 37 216-257 5-41 (56)
287 TIGR00822 EII-Sor PTS system, 80.6 1.4 3.1E-05 39.9 2.8 7 114-120 120-126 (265)
288 PF01733 Nucleoside_tran: Nucl 80.5 0.43 9.4E-06 43.9 -0.5 109 99-208 187-306 (309)
289 PF08507 COPI_assoc: COPI asso 80.5 8.9 0.00019 31.0 7.3 24 216-239 89-112 (136)
290 KOG4332|consensus 80.3 17 0.00036 33.8 9.5 108 96-203 284-397 (454)
291 COG3202 ATP/ADP translocase [E 80.1 43 0.00093 33.3 12.9 102 106-210 74-208 (509)
292 PF07857 DUF1632: CEO family ( 80.0 5.2 0.00011 36.1 6.2 46 191-236 85-139 (254)
293 PF06422 PDR_CDR: CDR ABC tran 78.0 1.9 4E-05 33.4 2.4 20 187-206 42-61 (103)
294 PF02487 CLN3: CLN3 protein; 77.2 6.5 0.00014 37.9 6.3 108 96-208 283-393 (402)
295 PF11044 TMEMspv1-c74-12: Plec 77.2 7.2 0.00016 25.4 4.4 19 213-231 4-22 (49)
296 PF01925 TauE: Sulfite exporte 76.3 50 0.0011 28.6 11.4 34 180-213 161-195 (240)
297 KOG3810|consensus 74.4 3.8 8.1E-05 39.0 3.8 96 96-195 273-371 (433)
298 COG3071 HemY Uncharacterized e 74.3 32 0.0007 32.9 9.9 82 155-245 7-89 (400)
299 PF10883 DUF2681: Protein of u 73.8 12 0.00027 28.0 5.7 21 220-240 9-29 (87)
300 TIGR01478 STEVOR variant surfa 73.8 5.2 0.00011 36.5 4.4 45 198-242 248-292 (295)
301 PF03606 DcuC: C4-dicarboxylat 72.8 9.4 0.0002 37.5 6.3 15 114-128 104-118 (465)
302 COG4736 CcoQ Cbb3-type cytochr 72.6 6 0.00013 27.6 3.5 10 267-276 47-56 (60)
303 KOG3832|consensus 71.7 11 0.00025 33.1 5.8 21 263-283 81-101 (319)
304 PF01770 Folate_carrier: Reduc 71.6 10 0.00022 36.7 6.1 96 95-194 286-384 (412)
305 PF12597 DUF3767: Protein of u 69.2 23 0.0005 28.1 6.7 31 215-245 70-100 (118)
306 PF12832 MFS_1_like: MFS_1 lik 68.6 18 0.00038 26.2 5.6 40 13-52 32-72 (77)
307 PF14002 YniB: YniB-like prote 68.4 8.1 0.00018 32.3 4.1 21 264-284 116-136 (166)
308 COG3715 ManY Phosphotransferas 67.8 8.3 0.00018 35.0 4.3 9 112-120 118-126 (265)
309 PRK09757 PTS system N-acetylga 65.1 9.3 0.0002 34.8 4.2 7 114-120 121-127 (267)
310 PRK01637 hypothetical protein; 63.8 83 0.0018 28.6 10.3 11 263-273 275-285 (286)
311 PF06912 DUF1275: Protein of u 63.2 96 0.0021 26.5 14.6 63 108-170 60-129 (209)
312 PRK10921 twin-arginine protein 62.9 29 0.00063 31.3 7.0 7 159-165 161-167 (258)
313 PRK10621 hypothetical protein; 62.8 1.1E+02 0.0025 27.2 12.6 23 104-126 84-106 (266)
314 PF11947 DUF3464: Protein of u 62.5 19 0.0004 30.0 5.1 82 117-201 57-145 (153)
315 PF03390 2HCT: 2-hydroxycarbox 62.3 1.3E+02 0.0028 29.2 11.5 33 153-185 153-185 (414)
316 PRK12489 anaerobic C4-dicarbox 62.2 1.6E+02 0.0035 28.8 16.4 16 27-45 6-21 (443)
317 PRK13954 mscL large-conductanc 60.5 82 0.0018 25.1 8.2 17 218-234 70-86 (119)
318 PF13038 DUF3899: Domain of un 59.4 15 0.00033 27.4 3.9 15 216-230 7-21 (92)
319 KOG3574|consensus 59.3 17 0.00036 35.3 4.9 90 116-205 90-188 (510)
320 PRK12586 putative monovalent c 58.9 79 0.0017 26.1 8.2 25 214-238 74-98 (145)
321 PF02699 YajC: Preprotein tran 56.4 23 0.0005 26.1 4.3 25 223-247 10-34 (82)
322 PF11744 ALMT: Aluminium activ 56.3 2E+02 0.0043 27.9 12.3 17 42-58 6-24 (406)
323 PRK14397 membrane protein; Pro 53.9 63 0.0014 28.6 7.3 18 21-38 7-24 (222)
324 TIGR00739 yajC preprotein tran 53.6 20 0.00044 26.6 3.6 22 224-245 12-33 (84)
325 PHA03239 envelope glycoprotein 52.5 2.3E+02 0.0051 27.6 12.6 13 269-281 416-428 (429)
326 PF07672 MFS_Mycoplasma: Mycop 52.4 1.6E+02 0.0034 26.9 9.7 104 97-201 144-254 (267)
327 TIGR00784 citMHS citrate trans 51.4 1.5E+02 0.0033 28.6 10.3 12 113-124 82-93 (431)
328 PF15330 SIT: SHP2-interacting 51.3 28 0.0006 27.2 4.2 30 216-245 4-33 (107)
329 COG1422 Predicted membrane pro 51.2 20 0.00043 31.2 3.6 14 223-236 60-73 (201)
330 COG4700 Uncharacterized protei 51.2 60 0.0013 28.4 6.5 22 213-234 28-49 (251)
331 KOG3817|consensus 51.1 93 0.002 29.6 8.2 101 12-120 132-250 (452)
332 KOG3626|consensus 50.8 1E+02 0.0023 32.1 9.3 88 153-240 588-702 (735)
333 KOG4332|consensus 50.5 2.2E+02 0.0047 26.7 12.3 190 13-205 69-305 (454)
334 COG1298 FlhA Flagellar biosynt 50.1 26 0.00056 35.9 4.7 19 159-178 239-257 (696)
335 TIGR00220 mscL large conductan 49.5 18 0.0004 29.1 3.0 16 218-233 75-90 (127)
336 PF15048 OSTbeta: Organic solu 49.4 22 0.00047 28.5 3.3 25 213-237 35-59 (125)
337 PRK03427 cell division protein 49.1 19 0.00042 33.7 3.5 26 216-241 7-32 (333)
338 KOG3682|consensus 48.3 23 0.0005 36.3 4.1 49 231-279 82-133 (930)
339 PRK13955 mscL large-conductanc 47.6 29 0.00063 28.1 3.9 16 218-233 73-88 (130)
340 PF02480 Herpes_gE: Alphaherpe 47.1 6.3 0.00014 38.4 0.0 22 221-242 365-386 (439)
341 PF07271 Cytadhesin_P30: Cytad 46.9 22 0.00047 32.2 3.3 10 238-247 97-106 (279)
342 PTZ00234 variable surface prot 46.4 14 0.00031 35.9 2.3 18 217-234 367-384 (433)
343 PRK05886 yajC preprotein trans 46.3 38 0.00083 26.5 4.2 13 226-239 15-27 (109)
344 PRK05585 yajC preprotein trans 46.0 37 0.00081 26.4 4.2 16 224-240 27-42 (106)
345 cd04411 Ribosomal_P1_P2_L12p R 45.3 11 0.00023 29.4 1.0 11 267-277 91-101 (105)
346 KOG2568|consensus 44.1 3.4E+02 0.0075 27.1 14.3 13 185-197 375-387 (518)
347 PF06697 DUF1191: Protein of u 43.6 29 0.00064 31.7 3.7 12 236-247 238-249 (278)
348 PF07456 Hpre_diP_synt_I: Hept 43.5 1.5E+02 0.0032 24.6 7.5 70 101-170 68-142 (148)
349 PTZ00373 60S Acidic ribosomal 43.5 11 0.00023 29.8 0.8 11 267-277 97-107 (112)
350 PF01988 VIT1: VIT family; In 43.3 65 0.0014 28.0 5.8 13 222-234 41-53 (213)
351 PF02447 GntP_permease: GntP f 42.5 3.4E+02 0.0073 26.6 15.8 33 96-128 58-99 (441)
352 PF05568 ASFV_J13L: African sw 41.9 47 0.001 27.4 4.2 31 215-245 32-62 (189)
353 cd02434 Nodulin-21_like_3 Nodu 41.7 64 0.0014 28.5 5.5 41 194-235 15-55 (225)
354 KOG2963|consensus 41.7 37 0.00081 32.0 4.1 10 70-79 100-109 (405)
355 PF12606 RELT: Tumour necrosis 40.5 41 0.00088 22.6 3.1 10 223-232 12-21 (50)
356 PF07172 GRP: Glycine rich pro 40.5 50 0.0011 25.2 4.0 12 223-234 12-23 (95)
357 KOG2881|consensus 40.4 1.5E+02 0.0033 27.0 7.6 49 190-245 108-156 (294)
358 PF00558 Vpu: Vpu protein; In 40.1 61 0.0013 24.0 4.3 21 216-236 10-30 (81)
359 smart00786 SHR3_chaperone ER m 39.8 2.2E+02 0.0047 24.8 8.2 27 219-245 140-166 (196)
360 PF11446 DUF2897: Protein of u 39.6 49 0.0011 22.6 3.4 22 218-239 7-28 (55)
361 PF11119 DUF2633: Protein of u 39.5 1.2E+02 0.0026 21.0 5.3 32 214-245 11-43 (59)
362 PF06679 DUF1180: Protein of u 39.5 28 0.0006 29.3 2.7 21 223-243 103-123 (163)
363 PF07854 DUF1646: Protein of u 39.5 83 0.0018 29.5 6.0 31 209-239 179-209 (347)
364 cd01116 P_permease Permease P 39.4 1.2E+02 0.0026 28.7 7.5 8 158-165 113-120 (413)
365 PRK10263 DNA translocase FtsK; 39.1 6.1E+02 0.013 28.6 16.4 11 98-108 74-84 (1355)
366 KOG2766|consensus 38.9 62 0.0013 29.6 4.9 19 211-229 279-297 (336)
367 KOG4255|consensus 38.7 2.4E+02 0.0052 26.9 8.9 31 209-239 187-217 (439)
368 COG1862 YajC Preprotein transl 38.4 53 0.0012 25.2 3.9 25 221-245 15-39 (97)
369 PF09605 Trep_Strep: Hypotheti 37.8 2.2E+02 0.0048 24.2 8.1 28 98-125 156-183 (186)
370 COG3086 RseC Positive regulato 37.6 2.4E+02 0.0051 23.4 7.9 58 186-245 76-133 (150)
371 PF04246 RseC_MucC: Positive r 37.5 2.1E+02 0.0045 22.7 7.9 69 171-240 49-122 (135)
372 PLN00411 nodulin MtN21 family 37.5 3.6E+02 0.0078 25.4 11.7 27 98-124 192-218 (358)
373 PRK10297 PTS system N,N'-diace 37.4 86 0.0019 30.7 6.2 35 213-247 406-441 (452)
374 PF04971 Lysis_S: Lysis protei 36.4 1.1E+02 0.0024 21.9 4.9 35 210-244 30-64 (68)
375 PRK13953 mscL large-conductanc 36.3 66 0.0014 25.9 4.3 17 218-234 73-89 (125)
376 TIGR00297 conserved hypothetic 36.3 85 0.0018 28.1 5.4 16 228-243 58-73 (237)
377 PF01940 DUF92: Integral membr 36.0 77 0.0017 28.1 5.1 17 226-242 50-66 (226)
378 COG2165 PulG Type II secretory 36.0 1.2E+02 0.0026 23.5 5.9 27 214-240 12-38 (149)
379 COG2119 Predicted membrane pro 35.7 2.9E+02 0.0063 23.8 13.7 34 103-136 143-176 (190)
380 COG1422 Predicted membrane pro 35.7 41 0.00088 29.2 3.2 17 195-211 27-43 (201)
381 PF06667 PspB: Phage shock pro 35.4 82 0.0018 23.0 4.3 23 218-240 10-32 (75)
382 PF14981 FAM165: FAM165 family 35.2 85 0.0018 20.7 3.8 28 212-239 7-34 (51)
383 TIGR00985 3a0801s04tom mitocho 35.0 1.5E+02 0.0033 24.5 6.3 17 217-233 11-27 (148)
384 COG5336 Uncharacterized protei 34.6 74 0.0016 25.0 4.1 16 106-121 54-69 (116)
385 PRK10995 inner membrane protei 34.3 1.5E+02 0.0033 25.9 6.7 21 188-208 43-63 (221)
386 COG5336 Uncharacterized protei 34.2 84 0.0018 24.7 4.4 41 198-238 55-97 (116)
387 COG3238 Uncharacterized protei 34.2 2.7E+02 0.0059 23.1 9.5 30 91-122 88-117 (150)
388 COG3493 CitS Na+/citrate sympo 34.2 1.2E+02 0.0026 29.2 6.3 28 162-189 179-206 (438)
389 PF09973 DUF2208: Predicted me 33.4 87 0.0019 27.9 5.0 18 196-213 7-25 (233)
390 PF13584 BatD: Oxygen toleranc 33.1 1.2E+02 0.0027 29.5 6.6 23 213-235 426-448 (484)
391 PRK08156 type III secretion sy 32.9 88 0.0019 29.8 5.3 28 215-242 183-210 (361)
392 TIGR00819 ydaH p-Aminobenzoyl- 32.7 2.4E+02 0.0052 28.2 8.4 27 100-126 94-122 (513)
393 PF13493 DUF4118: Domain of un 31.9 1.4E+02 0.003 22.3 5.4 20 105-124 86-105 (105)
394 PF04120 Iron_permease: Low af 31.8 2.5E+02 0.0055 22.7 7.0 44 190-233 15-61 (132)
395 PHA03049 IMV membrane protein; 31.7 29 0.00062 24.6 1.3 20 215-234 6-25 (68)
396 PRK11588 hypothetical protein; 31.4 86 0.0019 31.3 5.1 13 115-127 137-149 (506)
397 TIGR02976 phageshock_pspB phag 31.3 85 0.0018 22.9 3.8 18 223-240 15-32 (75)
398 PF14584 DUF4446: Protein of u 31.2 38 0.00083 28.1 2.3 27 219-245 8-34 (151)
399 KOG1397|consensus 31.2 41 0.0009 32.3 2.7 22 216-237 236-257 (441)
400 KOG3787|consensus 31.2 2.4E+02 0.0052 27.8 7.8 59 95-155 231-299 (507)
401 PRK09458 pspB phage shock prot 31.1 53 0.0012 23.9 2.7 25 218-242 10-34 (75)
402 PRK12772 bifunctional flagella 31.0 94 0.002 31.7 5.4 26 217-242 453-478 (609)
403 PF02932 Neur_chan_memb: Neuro 30.9 1E+02 0.0023 24.9 5.0 27 210-236 56-82 (237)
404 COG1970 MscL Large-conductance 30.7 50 0.0011 26.6 2.7 14 221-234 80-93 (130)
405 PF03817 MadL: Malonate transp 30.3 99 0.0021 24.7 4.2 54 72-125 61-119 (125)
406 KOG2886|consensus 30.1 3.6E+02 0.0078 23.2 8.2 18 261-278 149-166 (209)
407 PRK10655 potE putrescine trans 29.9 4.9E+02 0.011 24.7 10.9 27 215-241 410-436 (438)
408 PRK06531 yajC preprotein trans 29.9 66 0.0014 25.4 3.3 8 234-241 20-27 (113)
409 PF00428 Ribosomal_60s: 60s Ac 29.9 21 0.00045 26.6 0.4 6 271-276 78-83 (88)
410 PF05680 ATP-synt_E: ATP synth 29.7 1.6E+02 0.0034 22.0 5.1 13 226-238 21-33 (86)
411 PF09605 Trep_Strep: Hypotheti 29.7 3.5E+02 0.0076 22.9 13.9 87 103-204 37-126 (186)
412 PRK00567 mscL large-conductanc 29.3 55 0.0012 26.6 2.8 16 218-233 80-95 (134)
413 TIGR00328 flhB flagellar biosy 29.2 93 0.002 29.4 4.8 28 215-242 188-215 (347)
414 PF08229 SHR3_chaperone: ER me 29.1 79 0.0017 27.4 3.9 30 218-247 139-168 (196)
415 PRK11099 putative inner membra 28.9 5.4E+02 0.012 24.9 12.9 19 153-171 286-304 (399)
416 PF08763 Ca_chan_IQ: Voltage g 28.9 79 0.0017 19.6 2.8 21 227-247 11-31 (35)
417 KOG2890|consensus 28.7 33 0.00071 31.8 1.5 22 112-133 91-113 (326)
418 TIGR00817 tpt Tpt phosphate/ph 28.5 4.3E+02 0.0094 23.6 15.6 35 95-129 144-181 (302)
419 TIGR02209 ftsL_broad cell divi 28.4 35 0.00075 24.8 1.4 9 223-231 13-21 (85)
420 PF02009 Rifin_STEVOR: Rifin/s 28.2 1.4E+02 0.0031 27.6 5.7 19 218-236 265-283 (299)
421 PTZ00046 rifin; Provisional 28.2 2E+02 0.0043 27.4 6.6 23 218-240 324-346 (358)
422 TIGR00807 malonate_madL malona 28.2 1.5E+02 0.0032 23.7 4.9 57 68-124 57-118 (125)
423 COG1836 Predicted membrane pro 27.9 2.3E+02 0.005 25.5 6.6 25 218-242 57-81 (247)
424 PF15345 TMEM51: Transmembrane 27.8 27 0.00058 31.0 0.8 10 160-169 18-27 (233)
425 PF05529 Bap31: B-cell recepto 27.5 74 0.0016 27.0 3.5 10 188-197 95-104 (192)
426 PF05393 Hum_adeno_E3A: Human 27.1 92 0.002 23.5 3.4 18 227-244 48-65 (94)
427 PF03616 Glt_symporter: Sodium 27.0 3.7E+02 0.0079 25.5 8.4 23 180-202 133-156 (368)
428 PRK06638 NADH:ubiquinone oxido 26.9 1E+02 0.0022 26.6 4.3 23 215-237 147-169 (198)
429 PF10101 DUF2339: Predicted me 26.9 7.1E+02 0.015 25.6 21.3 141 16-163 7-150 (745)
430 KOG4294|consensus 26.6 2E+02 0.0043 28.2 6.8 30 185-214 441-470 (520)
431 KOG1647|consensus 26.4 99 0.0021 27.4 4.0 12 223-234 180-191 (255)
432 TIGR01666 YCCS hypothetical me 26.4 7.6E+02 0.016 25.8 12.5 51 114-167 43-97 (704)
433 TIGR02840 spore_YtaF putative 26.3 3.5E+02 0.0076 23.4 7.6 50 185-235 33-83 (206)
434 PF15330 SIT: SHP2-interacting 26.2 1.4E+02 0.0031 23.2 4.5 9 231-239 22-30 (107)
435 PF07253 Gypsy: Gypsy protein; 26.0 1.5E+02 0.0032 29.4 5.5 33 213-245 416-448 (472)
436 cd01118 ArsB_permease Anion pe 25.9 3.7E+02 0.0079 25.5 8.4 12 155-166 115-126 (416)
437 PF03606 DcuC: C4-dicarboxylat 25.7 99 0.0021 30.3 4.4 7 111-117 105-111 (465)
438 COG1292 BetT Choline-glycine b 25.6 7.1E+02 0.015 25.1 16.3 24 101-124 318-341 (537)
439 PF12868 DUF3824: Domain of un 25.5 1.8E+02 0.004 23.7 5.2 9 227-235 19-27 (137)
440 PF04632 FUSC: Fusaric acid re 25.4 5.4E+02 0.012 25.9 9.9 37 127-163 392-429 (650)
441 TIGR01404 FlhB_rel_III type II 25.4 1.2E+02 0.0026 28.6 4.7 28 215-242 187-214 (342)
442 PRK05702 flhB flagellar biosyn 25.3 1.2E+02 0.0026 28.8 4.8 28 215-242 195-222 (359)
443 COG1333 ResB ResB protein requ 25.3 1.8E+02 0.0038 28.8 5.9 24 208-231 52-75 (478)
444 TIGR00822 EII-Sor PTS system, 25.2 1.2E+02 0.0026 27.6 4.5 20 107-126 117-136 (265)
445 PF05684 DUF819: Protein of un 25.2 1.7E+02 0.0037 28.0 5.8 10 171-180 130-139 (378)
446 PF11299 DUF3100: Protein of u 25.2 2.4E+02 0.0053 25.2 6.3 52 158-209 178-229 (241)
447 PF06912 DUF1275: Protein of u 25.2 4.2E+02 0.0092 22.4 13.4 26 15-40 44-69 (209)
448 PF13789 DUF4181: Domain of un 25.1 2.6E+02 0.0057 21.5 5.9 29 215-243 61-89 (110)
449 TIGR01477 RIFIN variant surfac 25.1 2.4E+02 0.0052 26.8 6.6 23 218-240 319-341 (353)
450 PRK12721 secretion system appa 25.0 1.2E+02 0.0027 28.6 4.7 28 215-242 188-215 (349)
451 PF02060 ISK_Channel: Slow vol 25.0 1.8E+02 0.004 23.4 4.9 29 214-242 44-74 (129)
452 PF12794 MscS_TM: Mechanosensi 25.0 2.1E+02 0.0045 26.9 6.3 20 213-232 232-251 (340)
453 TIGR02205 septum_zipA cell div 24.8 49 0.0011 30.4 2.0 16 215-230 6-21 (284)
454 PF04632 FUSC: Fusaric acid re 24.5 5.6E+02 0.012 25.8 9.8 19 215-233 133-151 (650)
455 PRK11246 hypothetical protein; 24.1 1E+02 0.0022 27.2 3.7 17 221-237 169-185 (218)
456 PRK13109 flhB flagellar biosyn 23.7 1.3E+02 0.0029 28.5 4.8 28 215-242 197-224 (358)
457 PF10883 DUF2681: Protein of u 23.5 2E+02 0.0043 21.6 4.7 17 218-234 11-27 (87)
458 TIGR01398 FlhA flagellar biosy 23.4 2.1E+02 0.0047 29.6 6.4 17 159-176 225-241 (678)
459 PF06645 SPC12: Microsomal sig 23.2 2.2E+02 0.0048 20.6 4.8 19 25-43 16-34 (76)
460 KOG1623|consensus 23.2 1.2E+02 0.0027 27.2 4.1 46 162-209 134-181 (243)
461 KOG1822|consensus 23.1 1.8E+02 0.0038 33.8 6.0 23 261-283 1218-1240(2067)
462 PF15102 TMEM154: TMEM154 prot 23.1 26 0.00057 28.9 -0.1 17 217-233 66-82 (146)
463 PF05961 Chordopox_A13L: Chord 22.8 72 0.0016 22.7 2.0 20 215-234 6-25 (68)
464 PLN03151 cation/calcium exchan 22.8 8.6E+02 0.019 25.2 13.2 13 115-127 167-179 (650)
465 TIGR02230 ATPase_gene1 F0F1-AT 22.8 3.6E+02 0.0078 20.7 6.3 26 108-133 56-82 (100)
466 PF07543 PGA2: Protein traffic 22.7 70 0.0015 26.2 2.3 8 226-233 24-31 (140)
467 PRK10747 putative protoheme IX 22.6 6.5E+02 0.014 23.7 9.7 32 156-187 8-40 (398)
468 KOG0843|consensus 22.6 62 0.0013 27.7 2.0 14 182-195 103-116 (197)
469 PF11457 DUF3021: Protein of u 22.5 3.8E+02 0.0083 21.0 12.3 27 220-246 109-135 (136)
470 COG1289 Predicted membrane pro 22.5 8.5E+02 0.018 25.0 11.1 11 112-122 50-60 (674)
471 PF03905 Corona_NS4: Coronavir 22.1 34 0.00073 21.9 0.3 16 3-18 20-35 (45)
472 PF10112 Halogen_Hydrol: 5-bro 21.7 3.3E+02 0.0072 23.1 6.5 9 224-232 39-47 (199)
473 cd02435 CCC1 CCC1. CCC1: This 21.6 3.4E+02 0.0073 24.2 6.7 20 193-212 57-76 (241)
474 PRK12468 flhB flagellar biosyn 21.6 1.7E+02 0.0037 28.1 5.1 29 214-242 194-222 (386)
475 COG4769 Predicted membrane pro 21.6 3.9E+02 0.0084 22.7 6.4 27 102-128 81-107 (181)
476 PF06305 DUF1049: Protein of u 21.5 2.7E+02 0.006 18.9 5.6 7 234-240 44-50 (68)
477 KOG1237|consensus 21.4 82 0.0018 31.8 3.0 60 149-208 456-516 (571)
478 PRK06298 type III secretion sy 21.3 1.6E+02 0.0035 27.9 4.8 28 215-242 189-216 (356)
479 PRK11111 hypothetical protein; 21.2 3.6E+02 0.0078 23.5 6.7 113 153-285 10-122 (214)
480 PF01956 DUF106: Integral memb 21.2 1.5E+02 0.0033 24.5 4.1 68 204-273 3-70 (168)
481 PF09847 DUF2074: Predicted pe 21.2 6.3E+02 0.014 24.7 9.0 127 99-275 119-247 (449)
482 PF06084 Cytomega_TRL10: Cytom 21.2 68 0.0015 25.4 1.8 61 218-278 65-149 (150)
483 PRK10478 putative PTS system f 21.1 1.2E+02 0.0025 29.0 3.7 100 156-280 253-356 (359)
484 PRK13108 prolipoprotein diacyl 21.0 8.1E+02 0.018 24.2 10.7 181 49-279 103-318 (460)
485 TIGR00378 cax calcium/proton e 21.0 6.9E+02 0.015 23.4 11.2 146 116-277 42-202 (349)
486 PRK01637 hypothetical protein; 20.8 2.4E+02 0.0053 25.5 5.8 49 210-274 238-286 (286)
487 PF12273 RCR: Chitin synthesis 20.7 81 0.0018 25.1 2.3 29 212-240 1-29 (130)
488 PF11714 Inhibitor_I53: Thromb 20.7 1.3E+02 0.0028 21.6 3.0 55 214-279 3-57 (78)
489 PF01988 VIT1: VIT family; In 20.7 2.7E+02 0.0059 24.0 5.8 100 155-273 1-101 (213)
490 PF00939 Na_sulph_symp: Sodium 20.6 4.2E+02 0.0092 25.7 7.8 166 97-273 91-269 (471)
491 PF13994 PgaD: PgaD-like prote 20.6 1.5E+02 0.0032 24.0 3.8 75 210-284 60-138 (138)
492 PF15099 PIRT: Phosphoinositid 20.6 99 0.0021 24.9 2.7 30 216-245 87-116 (129)
493 PLN00136 silicon transporter; 20.6 3E+02 0.0066 27.1 6.7 180 92-280 71-263 (482)
494 TIGR00267 conserved hypothetic 20.5 2.3E+02 0.0049 23.7 5.1 72 193-279 11-83 (169)
495 PTZ00240 60S ribosomal protein 20.5 28 0.00061 32.6 -0.5 22 256-277 297-318 (323)
496 cd02434 Nodulin-21_like_3 Nodu 20.4 3E+02 0.0066 24.1 6.1 100 155-273 2-102 (225)
497 TIGR00811 sit silicon transpor 20.3 82 0.0018 31.0 2.5 43 237-279 492-541 (545)
498 PRK10669 putative cation:proto 20.2 1.8E+02 0.004 29.0 5.2 64 207-282 359-422 (558)
499 PF07946 DUF1682: Protein of u 20.2 42 0.0009 31.3 0.5 47 233-279 255-301 (321)
500 COG0586 DedA Uncharacterized m 20.1 3.4E+02 0.0073 23.4 6.2 53 193-245 156-208 (208)
No 1
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.59 E-value=2.9e-13 Score=132.14 Aligned_cols=194 Identities=13% Similarity=0.041 Sum_probs=148.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-hHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHH-------------
Q psy4795 14 GVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI------------- 79 (285)
Q Consensus 14 g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~~------------- 79 (285)
..|+.|.++...++.....+...+. +.++ .+.++..+++..+.+..|..+|.+.++|+.++..
T Consensus 192 ~~d~~g~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~ 268 (495)
T PRK14995 192 PLNLGHALMLIVAILLLVYSAKTAL---KGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMA 268 (495)
T ss_pred CCChHhHHHHHHHHHHHHHHHHhcc---ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHH
Confidence 3688888888877777776655433 3333 3455556666666777788888777776544321
Q ss_pred ----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795 80 ----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH 147 (285)
Q Consensus 80 ----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~ 147 (285)
..+.|.|++...|. .++|+.+...+++..+++++.|++.||+|||+++..|.++..++...+....+
T Consensus 269 ~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~- 347 (495)
T PRK14995 269 MTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-
Confidence 12347788888887 57999999999999999999999999999999999888887776655444333
Q ss_pred CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+++.+......++.|+|.|...++......+..|+++ +.+.+.+++.+++|.++|.++.+.+..
T Consensus 348 ~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 348 STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667888999999999989988888898776 999999999999999999999887644
No 2
>KOG3098|consensus
Probab=99.52 E-value=2.3e-13 Score=131.11 Aligned_cols=153 Identities=24% Similarity=0.322 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc---ccCChhHHHHHHHHHHHHHHHHHHhCCCCC--------------ChHHHHHH
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMK---FIGRSPLMALGFIVHCCLIWILVVWRPHPN--------------NPKIFFTI 157 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsD---riGrk~~i~~g~~l~~i~~~~l~~~~p~~~--------------~~~~~~~~ 157 (285)
..++.++..++++.+++...+.++| |+||++++.++.++|.+..++.....|.+. +..+..++
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence 5778999999999999999998886 499999999999999999988887777543 35678889
Q ss_pred HHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHM 237 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~ 237 (285)
.++.|++|+++|++.+.+++..+|+++.++|+++++.|+++.+++++.++....+.+...+.+...++...++.+..+++
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l~~~~l~~~i~~~i~~~~~~~~~~~~~ 439 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYLLLYIYTLGLPIFCVIATTIFFIVAERTQ 439 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998998
Q ss_pred HhHHhhhhhc
Q psy4795 238 MKARRQKRLA 247 (285)
Q Consensus 238 ~~~~~~~~~~ 247 (285)
.++||+++++
T Consensus 440 ~~~~k~~~~~ 449 (461)
T KOG3098|consen 440 AMEKKLTEEK 449 (461)
T ss_pred HHHHhhhhhh
Confidence 8888777655
No 3
>PRK10504 putative transporter; Provisional
Probab=99.49 E-value=3.5e-12 Score=122.92 Aligned_cols=127 Identities=11% Similarity=0.056 Sum_probs=101.2
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
+.|.|.+...|. ...|+.+....++..++.++.|+++||+|||+++..+.++..+...++.. .+..++.+...+..+
T Consensus 283 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 361 (471)
T PRK10504 283 MTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML-VALLGWYYLLPFVLF 361 (471)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh-ccccccHHHHHHHHH
Confidence 457787776776 47888899999999999999999999999999999888876666554433 222334444445567
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+.|++.+...+..+++..+.+|++. +.+++.+++.+++|+++|..+.+.+
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888899999998765 9999999999999999999887765
No 4
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.47 E-value=4.1e-12 Score=122.87 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=101.9
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc--cCChhHHHHHH--HHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF--IGRSPLMALGF--IVHCCLIWILVVWRPHPNNPKIFFT 156 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr--iGrk~~i~~g~--~l~~i~~~~l~~~~p~~~~~~~~~~ 156 (285)
.|.|.++ .|. .+.|+++.+.+++..+++++.|+++|| +++++...++. +...++.+.... .++.+.+++
T Consensus 264 l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~i 338 (455)
T TIGR00892 264 LVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----AGDYTGLVI 338 (455)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHH
Confidence 3556654 465 578899999999999999999999997 33443333333 222222222211 345666777
Q ss_pred HHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHHH
Q psy4795 157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR-----MKLYVMGVVLVTGFCGYV 230 (285)
Q Consensus 157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~-----~~l~il~~~lv~~~v~~~ 230 (285)
..+++|++.+..++..++++.+.+|+++ +.+.++++..+++|..+|..+.+.+... +-.++..++.+++.+ +.
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~-~~ 417 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL-FL 417 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH-HH
Confidence 7889999999999999999999998766 9999999999999999999998876432 234444444444443 44
Q ss_pred HHHHH
Q psy4795 231 IVEVR 235 (285)
Q Consensus 231 ~~e~~ 235 (285)
..+..
T Consensus 418 ~~~~~ 422 (455)
T TIGR00892 418 AIGNY 422 (455)
T ss_pred HHHHH
Confidence 44443
No 5
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.3e-11 Score=115.28 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhccc-C-CC-Cc-c---------------hHHH
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP-H-PN-NP-K---------------IFFT 78 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~-~-~~-~p-~---------------l~~~ 78 (285)
+|.++....+++.++.++...+.+.+|||..+..-..+.++.+.....+-| + .+ .+ . ..+.
T Consensus 139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~ 218 (394)
T COG2814 139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLL 218 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHH
Confidence 567788888889999999999999999987776656666665444444434 1 11 11 0 1111
Q ss_pred H-----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC
Q psy4795 79 I-----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 145 (285)
Q Consensus 79 ~-----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~ 145 (285)
. ..|..-|+++.-|. +.+++++..+|++..+|+.++|+++|| +.++.+.....++.+..+.+.++
T Consensus 219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~- 296 (394)
T COG2814 219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT- 296 (394)
T ss_pred HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh-
Confidence 1 12345567777776 578899999999999999999999999 88888888877777766665443
Q ss_pred CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
+++.+......++||+..+.-......-+.+..|++.+.+.|++.-..|+|.++|..+++.+..+.
T Consensus 297 --~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~ 362 (394)
T COG2814 297 --GASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL 362 (394)
T ss_pred --cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577777788899988777766677777766788899999999999999999999999987663
No 6
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.45 E-value=5.8e-12 Score=121.16 Aligned_cols=194 Identities=17% Similarity=0.187 Sum_probs=143.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-h-HHHHHHHHHHHHHHHHHHhcccCCCCcchHHH-------------
Q psy4795 14 GVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-S-PLMALGFIVHCCLIWILVVWRPHPNNPKIFFT------------- 78 (285)
Q Consensus 14 g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~-~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~------------- 78 (285)
..|+.|..+...+..........|. +.++ + ..+..........+..+..+|.+.++|.....
T Consensus 187 ~~d~~g~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
T TIGR00711 187 NFDFLGLLLLSVGLGSLLYGLSEGP---ERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVY 263 (485)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhCC---CCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHH
Confidence 4788888888888877777666665 5565 3 34444444455555566666655444432211
Q ss_pred ----------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH-HhC
Q psy4795 79 ----------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-VWR 145 (285)
Q Consensus 79 ----------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~-~~~ 145 (285)
...+.|.|+++.+|. .+.|+.+...+++..+++++.|++.||+|||+++..+..+..++...+. ...
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (485)
T TIGR00711 264 MSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT 343 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC
Confidence 122458888888887 4789999999999999999999999999999999988887777665544 223
Q ss_pred CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+ +.+.+.......+.|++.+...++......+.+|+++ +.+.+++++.+++|.++|..+.+.+..
T Consensus 344 ~-~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 344 P-DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445566666788999999988888887778888665 999999999999999999988776544
No 7
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.45 E-value=3.3e-12 Score=123.62 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=94.6
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
+.|.|+++.+|. .++|+++...+++..++++++|+++||+|||+++..+..+..+..+++.. .+ .++.+......+
T Consensus 297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 374 (496)
T PRK03893 297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA-IG-GANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-cc-ccHHHHHHHHHH
Confidence 457888777776 57899999999999999999999999999999988877665554433322 22 233333434344
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
+.+.......+..++++.+.+|+++ +.++++++...++|..+|..+++.+..+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 4443333344566778889998765 9999999999999999999998877543
No 8
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.43 E-value=2.5e-11 Score=118.34 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=86.7
Q ss_pred hhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
|.|.|+++.+|.+ ..++......++..++++++|+++||+|||+.+..+.+...+...+++.... .++...+++..+
T Consensus 272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 350 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-SNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 4577887777773 4567777888999999999999999999999988877643333333222221 234455555566
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhh
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~ 210 (285)
+.|++.+...+..++.+.+.+|++. +.+.+. +++.+..| .++..+.+.+.
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~ 402 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLV 402 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 6777766677777788888999876 888884 67765554 45555555543
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.43 E-value=3.8e-11 Score=114.06 Aligned_cols=190 Identities=16% Similarity=0.046 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhc-ccCC-----CCc---------------chHHH
Q psy4795 20 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHP-----NNP---------------KIFFT 78 (285)
Q Consensus 20 ~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~-e~~~-----~~p---------------~l~~~ 78 (285)
.......++..++..+.|.+....|++..++...+..++..+..+.. ++++ +++ .....
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGI 229 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHH
Confidence 44455666777777888888888887644444443333332222222 2111 011 10000
Q ss_pred --H----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh
Q psy4795 79 --I----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144 (285)
Q Consensus 79 --~----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~ 144 (285)
. ..+.|.|.++.+|. ...|++....+++..+++++.|++.||.++++.+..+.+...++.+.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~- 308 (417)
T PRK10489 230 ALLGGLLTMASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL- 308 (417)
T ss_pred HHHHHHHHHHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-
Confidence 0 11336777776776 46889999999999999999999999988887887777766655544322
Q ss_pred CCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 145 ~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
.++.+...+..+++|++.+...+..++++.+.+|++. ++++++++..+++|..+|..+.+.+....
T Consensus 309 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~ 375 (417)
T PRK10489 309 ---MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM 375 (417)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence 2345566677888899998888888889999999875 99999999999999999999998887653
No 10
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.42 E-value=1.8e-12 Score=126.36 Aligned_cols=155 Identities=17% Similarity=0.286 Sum_probs=120.6
Q ss_pred hHHHHhhhhhhhhhhc--cch--hHHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy4795 75 IFFTISGLWGAYISCA--LGV--SSVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPN 149 (285)
Q Consensus 75 l~~~~~~ft~~Y~~~~--lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~ 149 (285)
-.|....+.|.|+++. +|. .+.|.++..+.++..++++++|+++|| +|||+++.++.++..++.+.+.. .+
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~----~~ 100 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM----SI 100 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh----cc
Confidence 3344556778888876 777 579999999999999999999999999 89999999999988887765543 23
Q ss_pred ChHHHHHHHHHHHHhhhhhhcccccceeeecccc----chhHhHHHHHHHHHHHHHHHHHhhhhhHH--H--HHHHHHHH
Q psy4795 150 NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN----KEAAFSNFRLWESVGFVIAYAYSTHLCAR--M--KLYVMGVV 221 (285)
Q Consensus 150 ~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~----~~~afs~~~l~~~lG~~ig~~~s~~l~~~--~--~l~il~~~ 221 (285)
+++.+++...+.|+|.|.+.+..++++++.+|++ ++.+++.++...|+|.++|..+++.+..+ + -.++..+.
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~ 180 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVG 180 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4556666777899999999999999999999753 47799999999999999999999887542 2 23343444
Q ss_pred HHHHHHHHHHHH
Q psy4795 222 LVTGFCGYVIVE 233 (285)
Q Consensus 222 lv~~~v~~~~~e 233 (285)
.+++.+.+....
T Consensus 181 ~~~~~l~~~~~~ 192 (475)
T TIGR00924 181 MVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHcc
Confidence 445555554443
No 11
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.41 E-value=1.4e-12 Score=119.92 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=105.0
Q ss_pred hhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 85 AYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 85 ~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
.++++.+|. .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.....+ .++++.+++..++.|
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g 93 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF----AGAYVSLYILRVLLG 93 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHHH
Confidence 345666776 57899999999999999999999999999999999998887776655544 236788888899999
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
++.+...+..++++.+.+|+++ +.+.+..+...++|..++..+++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 94 AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred HHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 9999999999999999998755 99999999999999999998887654
No 12
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.41 E-value=7.1e-11 Score=111.64 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcc-cCCCC--------------c--chHHHH-
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWR-PHPNN--------------P--KIFFTI- 79 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e-~~~~~--------------p--~l~~~~- 79 (285)
|.......++..++.+..|.+.+++|+|..++...+..++. +...+..+ ++++. + ...+..
T Consensus 146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (393)
T PRK15011 146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVIC 225 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHH
Confidence 34445567888888899899988999986665544444433 32222222 11110 0 101000
Q ss_pred ----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795 80 ----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH 147 (285)
Q Consensus 80 ----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~ 147 (285)
..+.|.|+++.+|. .+.|.+.....++.+++.++.|+++||+|||+.+..+.+...+....+..
T Consensus 226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---- 301 (393)
T PRK15011 226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---- 301 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----
Confidence 12357788887777 46777777777788889999999999999999887776554443322221
Q ss_pred CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.++++...+..++.+++.|...+..+....+.+|++++.+.+.++...++|..+|..+++.+..+
T Consensus 302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~ 366 (393)
T PRK15011 302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI 366 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344444555555566665555556667788898889999999999999999999999887654
No 13
>PRK03545 putative arabinose transporter; Provisional
Probab=99.40 E-value=6.9e-11 Score=111.31 Aligned_cols=207 Identities=11% Similarity=0.105 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHH-HHHHhccc-CCC--C-----------cch--HHHH--
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLI-WILVVWRP-HPN--N-----------PKI--FFTI-- 79 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l-~~fl~~e~-~~~--~-----------p~l--~~~~-- 79 (285)
|......+++..++.++.+.+.+++|++..+....++.++.. ..+...++ +++ + +.. .+..
T Consensus 136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (390)
T PRK03545 136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTV 215 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHH
Confidence 344555666777777777888888999766555444444432 22222221 111 1 100 0000
Q ss_pred ---------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCC
Q psy4795 80 ---------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP 148 (285)
Q Consensus 80 ---------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~ 148 (285)
..+.+.|+++..|. ...++.+...+++..+++++.|+++||+|||++. .+..+...+...+... .
T Consensus 216 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~---~ 291 (390)
T PRK03545 216 VVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA---A 291 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH---h
Confidence 11235566666676 4688899999999999999999999999988654 4444333333332222 2
Q ss_pred CChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHH
Q psy4795 149 NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVLVT 224 (285)
Q Consensus 149 ~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~lv~ 224 (285)
++.+...+..+++|++.+...+..++.+.+..|++++.+.+.++..+++|..+|...++.+..+ .-.++...+.++
T Consensus 292 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~ 371 (390)
T PRK03545 292 NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALA 371 (390)
T ss_pred chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 3456667778889998887777777888888888779999999999999999999998886643 334444444455
Q ss_pred HHHHH
Q psy4795 225 GFCGY 229 (285)
Q Consensus 225 ~~v~~ 229 (285)
+.+.+
T Consensus 372 ~~~~~ 376 (390)
T PRK03545 372 ALVWS 376 (390)
T ss_pred HHHHH
Confidence 44443
No 14
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.40 E-value=7.2e-11 Score=111.66 Aligned_cols=130 Identities=9% Similarity=-0.015 Sum_probs=99.6
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC-CCCCChHHHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR-PHPNNPKIFFTISG 159 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~-p~~~~~~~~~~~~~ 159 (285)
.|.|+.+.+|. .+.|+......++..+++++.|+++||+|||+.+..+.++..++...+.... +.+++.+..++...
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 36677776777 4577777777888999999999999999999999988877766655443321 22344556667788
Q ss_pred HHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
+.|++.+...+..+.......|++++++.+.+++.+.+|..+|..+.+.+...
T Consensus 318 ~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 89999988887776665544555669999999999999999999999887554
No 15
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.39 E-value=5.6e-12 Score=123.45 Aligned_cols=156 Identities=16% Similarity=0.271 Sum_probs=120.6
Q ss_pred chHHHHhhhhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795 74 KIFFTISGLWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNN 150 (285)
Q Consensus 74 ~l~~~~~~ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~ 150 (285)
.-.|....+.+.|+++.+|.+ ..+++...+.....+..+++|+++|| +|||+++..|.++..++.+++.+.. +.
T Consensus 28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~---~~ 104 (489)
T PRK10207 28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL---LK 104 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence 455666777889999989883 56688888888888889999999999 9999999999999888877665521 22
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHH
Q psy4795 151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVLV 223 (285)
Q Consensus 151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~lv 223 (285)
...+++...+.|+|.|...+..++++++.||+++ +.+++.+++..|+|.++|..+++.+..+ +-.++..+..+
T Consensus 105 ~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 105 PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 2345566788899999999999999999998653 5689999999999999999999887543 22333333344
Q ss_pred HHHHHHHHH
Q psy4795 224 TGFCGYVIV 232 (285)
Q Consensus 224 ~~~v~~~~~ 232 (285)
++.+.+.+.
T Consensus 185 ~~~~~~~~~ 193 (489)
T PRK10207 185 IALLVYFAC 193 (489)
T ss_pred HHHHHHHHc
Confidence 555555554
No 16
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.38 E-value=3.5e-12 Score=116.53 Aligned_cols=140 Identities=19% Similarity=0.301 Sum_probs=112.6
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
|.++.+.+|. .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+. ++.+.+++..++.
T Consensus 20 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ 95 (352)
T PF07690_consen 20 PLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA----SNFWLLLIARFLL 95 (352)
T ss_dssp H-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh----hhHHHHhhhcccc
Confidence 3366677776 579999999999999999999999999999999999999888884443331 3456888889999
Q ss_pred HHhhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHH
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA----RMKLYVMGVVLVTGFC 227 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~----~~~l~il~~~lv~~~v 227 (285)
|++.+...+..++++.+.+|++ ++.+++..+...++|..+|..+++.+.. ++-.++..++.++..+
T Consensus 96 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 96 GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 9999999999999999999884 5999999999999999999999988762 2234445554444444
No 17
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.37 E-value=8.6e-11 Score=110.62 Aligned_cols=124 Identities=16% Similarity=0.212 Sum_probs=95.9
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 83 WGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 83 t~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
.+.|..+ .|.+..++....++++..++.++.|++.||+|||+.+..+..+..++...+.. .++.+..++..++.|
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G 313 (399)
T PRK05122 239 ITLYYAA-RGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL----APSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHH-cccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHH
Confidence 3555543 35556677778889999999999999999999999988887776666544433 234556666778899
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++.+..++.......+.+|+++ +++.++++...++|..++..+.+.+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888877777788887665 999999999999999888777777654
No 18
>PRK10054 putative transporter; Provisional
Probab=99.36 E-value=1.1e-11 Score=117.65 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=104.8
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
..+.|.|+++.+|. .++|+++..+.++..+++++.|+++||+|||+++.++.++..++.+.+.+ .++.+..++.
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 102 (395)
T PRK10054 27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL----VNNVTLVVLF 102 (395)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH----HhHHHHHHHH
Confidence 34567788888887 57999999999999999999999999999999999988877766654433 2345666666
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..+.|.+.+.+.+..++...+.+|+++ +.+++.++...|+|.++|..+++.+.
T Consensus 103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 103 FALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888889999997765 99999999999999999999988864
No 19
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.36 E-value=1.4e-11 Score=117.02 Aligned_cols=128 Identities=18% Similarity=0.257 Sum_probs=110.9
Q ss_pred Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795 79 ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT 156 (285)
Q Consensus 79 ~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~ 156 (285)
...+.+.|+++.+|. .++|+...+..+...+.+++.|+++||+|||+++..+.++..++.+.+.. .++++.+++
T Consensus 29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~----~~~~~~l~~ 104 (400)
T PRK11646 29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI----AHEPWLLWL 104 (400)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH----hccHHHHHH
Confidence 345667788888887 58999999999999999999999999999999999999988887766544 245677788
Q ss_pred HHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..++.|++.+.++++.++++.+.+|+++ +.+.+.++...++|..+|..+++.+.
T Consensus 105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998765 99999999999999999999988875
No 20
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.36 E-value=1.8e-12 Score=119.28 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=102.2
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
++++.+|. .+.|++.....++..+++++.|+++||+|||+++..+.++..++.+..... ++.+.+++..++.|+
T Consensus 20 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~ 95 (379)
T TIGR00881 20 YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS----TSLWVMAALWALNGI 95 (379)
T ss_pred HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHh
Confidence 55666776 578999999999999999999999999999999999998887777665442 356788888999999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHH-HHhhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY-AYSTHL 209 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~-~~s~~l 209 (285)
+.+...+..++++.+.+|+++ +.+.+..+...++|..++. ..+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 96 FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 999999999999999998765 8999999999999999998 455444
No 21
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.36 E-value=1.4e-10 Score=109.05 Aligned_cols=189 Identities=18% Similarity=0.178 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHH-HHHHHH-hcccC-C--C--------------Cc--chHH
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCC-LIWILV-VWRPH-P--N--------------NP--KIFF 77 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~-~l~~fl-~~e~~-~--~--------------~p--~l~~ 77 (285)
|.......++..+..+..|.+.+..|++..+....++.++ .+..++ ..|++ + + ++ ...+
T Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (408)
T PRK09874 145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSL 224 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHH
Confidence 3444555566677777888888888987544433333332 222222 22211 1 0 01 1111
Q ss_pred HH------------hhhhhhhhhhccch-h----HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH
Q psy4795 78 TI------------SGLWGAYISCALGV-S----SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI 140 (285)
Q Consensus 78 ~~------------~~ft~~Y~~~~lg~-~----~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~ 140 (285)
.. ..+.+.|..+..+. . ..|.+..+.+++..++.++.|+++||+|||+.+..+.....++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 304 (408)
T PRK09874 225 FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP 304 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 10 01224555543332 2 2455666778889999999999999999999998888776655544
Q ss_pred HHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 141 LVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 141 l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
... .++.+..++..+++|++.+...+..++.+.+..|+++ +..++.++..+++|..+|..+++.+..
T Consensus 305 ~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 305 MSF----VQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred HHH----hccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence 333 2345667777888999999999998888888887665 999999999999999999999888754
No 22
>TIGR00895 2A0115 benzoate transport.
Probab=99.36 E-value=7.8e-12 Score=115.91 Aligned_cols=120 Identities=17% Similarity=0.229 Sum_probs=101.7
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
.+.+|. .+.|++.....++..+++++.|+++||+|||+.+..+.++..++.+.... .++.+.+++..++.|++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ 119 (398)
T TIGR00895 44 SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL----ATNVTQLLILRFLAGLGL 119 (398)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----ccchHHHHHHHHHHhccc
Confidence 344565 57889999999999999999999999999999999998887776655443 245677778889999999
Q ss_pred hhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 166 AVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+...+..++++.+.+|++ ++.+.+.++...++|..++..+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999865 4999999999999999999998877643
No 23
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.35 E-value=9.2e-11 Score=110.56 Aligned_cols=124 Identities=17% Similarity=0.110 Sum_probs=98.0
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL 160 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l 160 (285)
.|.|.++ .|. .+.+......+++..+++++.|+++||+|||+.+..+.+...++...+.. .++.+...+..++
T Consensus 243 ~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 317 (406)
T PRK11551 243 LPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA----APSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHH
Confidence 3556554 465 46888999999999999999999999999999988766655554433322 2244556666778
Q ss_pred HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.|++.+..++..+++..+.+|++. +.+.+..+...++|..+|..+.+.+..
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 888888888888899999998776 999999999999999999999888743
No 24
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.35 E-value=3.6e-11 Score=110.18 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC-CCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR-PHPNNPKIFFTISGLWGVGDAVWQTQV 172 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~-p~~~~~~~~~~~~~l~Gig~g~~~~~~ 172 (285)
.++|++...+.++..+++++.|+++||+|||+++..+.++..++........ ..+.+.+.+++..++.|++.+...+..
T Consensus 34 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 113 (365)
T TIGR00900 34 SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAY 113 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999998887666554433221 112467888888999999999999999
Q ss_pred ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++++.+.+|+++ +.+++.++...++|..+|..+++.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 114 QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998765 999999999999999999999888753
No 25
>PRK03699 putative transporter; Provisional
Probab=99.35 E-value=3.4e-10 Score=106.95 Aligned_cols=149 Identities=11% Similarity=0.163 Sum_probs=105.7
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
.|.|.|+++.+|. .+.+.+...+.++..++.+++|+++||+|||+.+.....+..+....+. .. ++.+...+..
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~~ 301 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV-NT---DDPSHLLYAI 301 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH-Hc---CCchHHHHHH
Confidence 3568899887777 4688888899999999999999999999999988876665554433322 22 2334445557
Q ss_pred HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~lv~~~v~~~~~e 233 (285)
+++|++.+...+...+...+..|++++...+......++|..++..+.+.+... .-.++..++.++..+....+-
T Consensus 302 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 302 LGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 788888777777777777777776667777877888899999999888776543 334444555555554444443
No 26
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.34 E-value=9.2e-11 Score=113.55 Aligned_cols=151 Identities=13% Similarity=0.039 Sum_probs=99.9
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
+.|.|+++.+|. .+.++.+....++..++++++|+++||+|||+.+..+.....+....+.... .++.+..++..+
T Consensus 280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 357 (467)
T PRK09556 280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH--ATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 458899888887 4678888899999999999999999999999877665444333322222221 334455555566
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH----------------HHHHHHHHHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA----------------RMKLYVMGVV 221 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~----------------~~~l~il~~~ 221 (285)
+.|++.............+.+|++. +.+.++.+...++ |.+++..+.+.+.. +.-.+++.++
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 6675432222233355668899876 9999999999997 65666555555433 2234455555
Q ss_pred HHHHHHHHHHHHH
Q psy4795 222 LVTGFCGYVIVEV 234 (285)
Q Consensus 222 lv~~~v~~~~~e~ 234 (285)
.+++.+.+..+..
T Consensus 438 ~~~~~~~~~~~~~ 450 (467)
T PRK09556 438 AIGCICLMAIVAV 450 (467)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 27
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.34 E-value=2.4e-11 Score=113.20 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=102.7
Q ss_pred hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795 87 ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG 164 (285)
Q Consensus 87 ~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig 164 (285)
+++.+|. .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+ .++++..++..++.|++
T Consensus 38 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~ 113 (405)
T TIGR00891 38 VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF----APGYITMFIARLVIGIG 113 (405)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhh
Confidence 3455666 57899999999999999999999999999999999998887776655444 34677888889999999
Q ss_pred hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.+...+...+++.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 114 MGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred hhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998665 99999999999999999998877654
No 28
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.34 E-value=1.7e-10 Score=106.86 Aligned_cols=207 Identities=16% Similarity=0.082 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHH-hcccCCC---------------Cc-ch-HHHH
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILV-VWRPHPN---------------NP-KI-FFTI 79 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl-~~e~~~~---------------~p-~l-~~~~ 79 (285)
|......+++..++.+..|.+.+.+|++..++...+..++. +..+. ..|++++ ++ .. .+..
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVA 207 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHH
Confidence 33344456777788888888888899986666554444433 22222 2221110 00 00 0000
Q ss_pred -----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCC
Q psy4795 80 -----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP 146 (285)
Q Consensus 80 -----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p 146 (285)
..+.|.|+++.+|. .+.|..+........++.++.|+++||+|||+++..+.+...+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--- 284 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA--- 284 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---
Confidence 01236777777776 46777777777788888999999999999999988776654443332222
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHH
Q psy4795 147 HPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVL 222 (285)
Q Consensus 147 ~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~l 222 (285)
.++.+..+....+.|++.+..++..+....+..|++++.+.+.++...++|..++..+++.+... .-.++..++.
T Consensus 285 -~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~ 363 (375)
T TIGR00899 285 -DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVML 363 (375)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 22345566667788888888888788888888888879999999999999999999998876543 2233334444
Q ss_pred HHHHHHH
Q psy4795 223 VTGFCGY 229 (285)
Q Consensus 223 v~~~v~~ 229 (285)
+++.+.+
T Consensus 364 ~~~~~~~ 370 (375)
T TIGR00899 364 IVALFCL 370 (375)
T ss_pred HHHHHHH
Confidence 4444443
No 29
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.34 E-value=8.6e-12 Score=119.00 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=104.7
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
.+++.+|. .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+ .++++.+++..++.|+
T Consensus 33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~ 108 (412)
T TIGR02332 33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF----ATGPESLYLLRILVGI 108 (412)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence 56677776 57899999999999999999999999999999999999888877766544 3456778888999999
Q ss_pred hhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+.+...+...+++.+.+|++ ++.+.+.++...++|..++..+++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 109 AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888999999875 599999999999999999999987763
No 30
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.34 E-value=7.6e-11 Score=106.93 Aligned_cols=206 Identities=18% Similarity=0.198 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccCCCCcchHHH--------Hhhhhhhhhhhc
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT--------ISGLWGAYISCA 90 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~--------~~~ft~~Y~~~~ 90 (285)
|.......++..++....+.+.+..+++...+...+..++..+......|+.-...+... ...+.|.|..+.
T Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (352)
T cd06174 126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEV 205 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455566777888888888888888888655554444444432222222211100000000 022446777775
Q ss_pred cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChh-HHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh
Q psy4795 91 LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSP-LMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV 167 (285)
Q Consensus 91 lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~-~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~ 167 (285)
.|. .+.++.....+++..+++++.|+++||+|||+ .+..+..+..++.+..... ++.+..++...+.|++.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~g~~~~~ 281 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA----PSLALLLVALLLLGFGLGF 281 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHhc
Confidence 555 57889999999999999999999999999999 8888888877776655442 3367777888999999999
Q ss_pred hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHH
Q psy4795 168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA----RMKLYVMGVVLVTGFCG 228 (285)
Q Consensus 168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~----~~~l~il~~~lv~~~v~ 228 (285)
.++..++.+.+.+|+++ +++++.++..+++|..++..+.+.+.. +.-.++..++.+++.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 282 AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 99999999999998655 999999999999999999999888753 22244444444444443
No 31
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.33 E-value=3.2e-11 Score=118.11 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=116.9
Q ss_pred chHHHHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795 74 KIFFTISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVWRPHPNN 150 (285)
Q Consensus 74 ~l~~~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-Grk~~i~~g~~l~~i~~~~l~~~~p~~~~ 150 (285)
...|.+..+.|.|+++.+|. .+.+.++..+.....++++++|+++||+ |||+++.+|.++..++.+.+.. + +++
T Consensus 23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~--~-~~~ 99 (493)
T PRK15462 23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA--S-EIH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH--h-hcc
Confidence 34566677889999998887 4688889999999999999999999999 9999999999988877654432 1 112
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccceeeecccc---chhHhHHHHHHHHHHHHHHHHHhhhhhHH--HH--HHHHHHHHH
Q psy4795 151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN---KEAAFSNFRLWESVGFVIAYAYSTHLCAR--MK--LYVMGVVLV 223 (285)
Q Consensus 151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~---~~~afs~~~l~~~lG~~ig~~~s~~l~~~--~~--l~il~~~lv 223 (285)
....++...+.++|.|.+.+..++++++.||++ |..++++++...|+|..+++.+.+.+..+ ++ ..+..+..+
T Consensus 100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179 (493)
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 233444455666888888888899999999864 48899999999999999999999887532 32 333333445
Q ss_pred HHHHHHHH
Q psy4795 224 TGFCGYVI 231 (285)
Q Consensus 224 ~~~v~~~~ 231 (285)
++.+.|..
T Consensus 180 l~li~~~~ 187 (493)
T PRK15462 180 AGLVIFLC 187 (493)
T ss_pred HHHHHHHH
Confidence 55555543
No 32
>PRK12382 putative transporter; Provisional
Probab=99.32 E-value=2.5e-10 Score=107.39 Aligned_cols=124 Identities=13% Similarity=0.221 Sum_probs=99.6
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 83 WGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 83 t~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
.+.|+++ .|.+..++....++++.++++++.|++.||+|||+.+..+..+..++.+.+.. . ++.+...+..++.|
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~g 313 (392)
T PRK12382 239 VSLYFAS-KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL-A---PTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH-c---ccHHHHHHHHHHHH
Confidence 3556544 45566777788889999999999999999999999999888877776655433 2 24556666778889
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++.+...+..++.+.+.+|+++ ++++++++...++|.++|..+.+.+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888888887665 999999999999999999999888654
No 33
>PRK12382 putative transporter; Provisional
Probab=99.31 E-value=4.1e-11 Score=112.65 Aligned_cols=131 Identities=12% Similarity=0.021 Sum_probs=104.9
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH--HHhCCC--CCChHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL--VVWRPH--PNNPKIF 154 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l--~~~~p~--~~~~~~~ 154 (285)
.+.|.|+++.+|. .++|++...+.++..+++++.|+++||+|||+++..+.+...++.+.. ....+. .++++.+
T Consensus 36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (392)
T PRK12382 36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL 115 (392)
T ss_pred hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence 3456677777787 589999999999999999999999999999999999887665543221 111121 2356777
Q ss_pred HHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 155 FTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 155 ~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++..++.|++.+...+...+.+.+.+|+++ +.+.+.+....+.|..+|..+++.+..
T Consensus 116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~ 173 (392)
T PRK12382 116 VVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999998888888889987655 999999999999999999999877644
No 34
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.30 E-value=3e-10 Score=104.00 Aligned_cols=190 Identities=17% Similarity=0.194 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcccCC-C---C--------------------c
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPHP-N---N--------------------P 73 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e~~~-~---~--------------------p 73 (285)
|.......++..++.++.|.+.++.|++..++...+..++. +..+....|++ + + +
T Consensus 131 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (365)
T TIGR00900 131 SLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNP 210 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCc
Confidence 44555666777777888888888999875555444333332 22222221111 0 1 0
Q ss_pred chHHH-H------------h-hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH
Q psy4795 74 KIFFT-I------------S-GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL 137 (285)
Q Consensus 74 ~l~~~-~------------~-~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~ 137 (285)
..... . . .+.|.|.++.+|. .+.|......+++..+++++.|++.||+||++++..+..+..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 00000 0 0 2347777776666 57889999999999999999999999999999988876665555
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 138 IWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 138 ~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
...+.. .+ + +.+..++..++.|++.+..++..++++.+.+|++. +.+.++++..+++|..++..+++.+..
T Consensus 291 ~~~~~~-~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 291 ILVVGL-TP-P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHh-hc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544333 22 1 36777778889999999999999999999998765 999999999999999999999887654
No 35
>TIGR00898 2A0119 cation transport protein.
Probab=99.29 E-value=7.5e-11 Score=114.67 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
.+.+++..++.++.++++++.|+++||+|||+++.++.++..++.+...+ .++++.+++..++.|++.+...+...
T Consensus 127 ~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~ 202 (505)
T TIGR00898 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF----SPNYTVFLVFRLLVGMGIGGIWVQAV 202 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhccchHHHHH
Confidence 35789999999999999999999999999999999998887776655544 34678888889999999999999999
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+++.|.+|+++ +.+.+++....++|..++..++..+.
T Consensus 203 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 203 VLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred HHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998765 88888999999999998888775543
No 36
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.29 E-value=3.1e-11 Score=111.61 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=103.6
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
..+.|.|+++.+|. .+.|++...+.++..+++++.|+++||+|||+.+..+.++..++.+.+.+.. ++++.+++.
T Consensus 21 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~ 97 (366)
T TIGR00886 21 SPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV---QSYSVLLLL 97 (366)
T ss_pred HHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHH
Confidence 34455567777887 5788999999999999999999999999999999999988888776654431 166777788
Q ss_pred HHHHHHhhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.++.|++.+.+ ++.++++.+.+|++ ++.+.+.+..+.++|..++..+++.+..
T Consensus 98 ~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 98 RLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88899987765 55678899999865 4999999999999999999888776543
No 37
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.29 E-value=1.2e-10 Score=113.75 Aligned_cols=115 Identities=13% Similarity=0.034 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCC---ChHHHHHHHHHHHHhhhhhhc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPN---NPKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~---~~~~~~~~~~l~Gig~g~~~~ 170 (285)
.+.+++...+.++..+++++.|+++||+|||+++..+.++..++.++.... ++.. +++.+++..++.|++.|...+
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS-PGSSPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-cCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence 356788999999999999999999999999999999988888777655442 2211 256778889999999999999
Q ss_pred ccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 171 QVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 171 ~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
..+.++.|.+|++. +.+.+..+...++|..++..++..+
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998766 9999999999999999998887654
No 38
>PRK09952 shikimate transporter; Provisional
Probab=99.29 E-value=4.7e-10 Score=107.91 Aligned_cols=150 Identities=11% Similarity=0.036 Sum_probs=101.1
Q ss_pred hhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
|.|.|.++.+|.+ ....+....++...++.++.|+++||+|||+++..+.++..++..+++......++.+.+....+
T Consensus 272 ~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T PRK09952 272 FALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM 351 (438)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4477777777773 33455667788889999999999999999999888877665544433332222333444455566
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHHHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR------MKLYVMGVVLVTGFCGYVI 231 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~------~~l~il~~~lv~~~v~~~~ 231 (285)
+.|++.+...+..++++.|.+|++. +.+.+. +++.+.+|..++..+.+.+... .-..++.++.+++.+....
T Consensus 352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888999999999866 667664 5666778888888777766331 1233344444555555543
No 39
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.28 E-value=2.4e-11 Score=111.66 Aligned_cols=119 Identities=15% Similarity=0.053 Sum_probs=97.3
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
++++.+|. .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+.... .++++.+++..++.|+
T Consensus 28 ~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~ 103 (377)
T TIGR00890 28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI----ADSLAALYLTYGLASA 103 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhH
Confidence 34455666 57999999999999999999999999999999999998888777755444 2456777788889999
Q ss_pred hhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
+.+..++.....+.+.+|++++.+.+.+....++|..++....+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (377)
T TIGR00890 104 GVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITS 148 (377)
T ss_pred HHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHH
Confidence 999888777778888889888999999999999998765444333
No 40
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.28 E-value=8.8e-11 Score=115.25 Aligned_cols=155 Identities=15% Similarity=0.248 Sum_probs=114.0
Q ss_pred HHHhhhhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795 77 FTISGLWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNNPKI 153 (285)
Q Consensus 77 ~~~~~ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~ 153 (285)
|....+.+.|+++.+|.+ +.+.+...+........+++|+++|| +|||+++..+.++..++...+.+. +++.+.
T Consensus 38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---~~~~~~ 114 (500)
T PRK09584 38 YGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---GHDAGI 114 (500)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---cccHHH
Confidence 445567788999999984 45566666666666667789999999 599999999998888776554432 223445
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhhhHH--HH--HHHHHHHHHHHH
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHLCAR--MK--LYVMGVVLVTGF 226 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l~~~--~~--l~il~~~lv~~~ 226 (285)
+++...+.|+|.|...+..++++++.||+++ ..+++.+++..|+|..+|..+++.+..+ |+ .++..+..+++.
T Consensus 115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 5566778899999999988999999998643 4588999999999999999999887542 33 444444445666
Q ss_pred HHHHHHHH
Q psy4795 227 CGYVIVEV 234 (285)
Q Consensus 227 v~~~~~e~ 234 (285)
+.+....+
T Consensus 195 i~~~~~~~ 202 (500)
T PRK09584 195 VNFAFCQR 202 (500)
T ss_pred HHHHHhHH
Confidence 56655543
No 41
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.28 E-value=3.5e-10 Score=107.27 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=89.8
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL 160 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l 160 (285)
.|.|+++ .|. ...+..+...++++.+++++.|+++||+|||+++..+.++..+...++.. .+ .++........+.
T Consensus 254 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 330 (426)
T PRK12307 254 LPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR-IP-QDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-Hc-cccHHHHHHHHHH
Confidence 3666655 355 46778888999999999999999999999999998888776655444332 22 2222222222223
Q ss_pred HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
.+.+.....+..+..+.+.+|++. +.+.++.+...++|..++..+.+.+..+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 333333334455677889999876 99999988888999999999988876544
No 42
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.27 E-value=1.3e-10 Score=108.15 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=104.7
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL 160 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l 160 (285)
.|.+.+ .+|. .+++++...+.++..+++++.|+++||+|||+++..+.++..++...... .++.+.+++..++
T Consensus 14 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l 88 (377)
T PRK11102 14 LPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL----AQTIDQLIYMRFL 88 (377)
T ss_pred HHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHH
Confidence 344444 3566 57899999999999999999999999999999999999888777666544 2456777888899
Q ss_pred HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.|++.+...+..++++.+.+|+++ +.+.+..+...++|..++..+++.+..
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 140 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV 140 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765 999999999999999999998877654
No 43
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.27 E-value=3.5e-11 Score=113.28 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=103.9
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--CCC--CCChHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--RPH--PNNPKIFF 155 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--~p~--~~~~~~~~ 155 (285)
+.|.|+++.+|. .++|+++.++.++..+++++.|+++||+|||+++..+.++..++...+... ..+ ..+.+.++
T Consensus 37 ~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (399)
T PRK05122 37 VLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLL 116 (399)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Confidence 456667777776 578999999999999999999999999999999999988766654332221 111 12345677
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+..++.|++.+...+..++.+.+.+|+++ +.+.+.+....++|..+|..+++.+..
T Consensus 117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 117 LGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred HHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 78899999999999988888888887655 999999999999999999999887654
No 44
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.27 E-value=5.6e-10 Score=106.92 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
+..|..+.+..+.++++.++.|+++||+|||+++..+.++..+....+....++..+.+..++..++.|++.+..++...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999887776544443222112345566678889999999888888
Q ss_pred cceeeeccccc-hhHhHHHH-HHHHHHHHHHHHHhhhhhHH
Q psy4795 174 GLYGTLFRRNK-EAAFSNFR-LWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~-l~~~lG~~ig~~~s~~l~~~ 212 (285)
.++.+.+|++. +++++..+ ..+++|..+|..+++.+..+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999765 99999997 67899999999999987655
No 45
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.26 E-value=1.2e-09 Score=102.82 Aligned_cols=205 Identities=14% Similarity=0.081 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhccc-CCCC--------c---ch---------H
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP-HPNN--------P---KI---------F 76 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~-~~~~--------p---~l---------~ 76 (285)
.|.+...-+++..++.+..|.+.+++|++..+........+.+..++..++ ++++ . .. .
T Consensus 130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (382)
T TIGR00902 130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLR 209 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHH
Confidence 355666667778888888899999999975554433332222333333331 1110 0 00 0
Q ss_pred HHH------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH
Q psy4795 77 FTI------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV 142 (285)
Q Consensus 77 ~~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~ 142 (285)
+.. ..|.|.|+++ .|. .++|+......+++++..++.|++.||+|+|+++.++.+...+.+....
T Consensus 210 ~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 210 FLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 1234677765 677 4789888899999999999999999999999999999998888776554
Q ss_pred HhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy4795 143 VWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFR-LWESVGFVIAYAYSTHLCARMKLYVMGV 220 (285)
Q Consensus 143 ~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~-l~~~lG~~ig~~~s~~l~~~~~l~il~~ 220 (285)
. .++.+.++....+.|++.+...+....++.+. |+++ +.+.++++ ....+|+++|..+++.+..+........
T Consensus 289 ~----~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~ 363 (382)
T TIGR00902 289 A----IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVF 363 (382)
T ss_pred h----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3 35667788889999999999999998888887 7655 77788876 5678999999999999877644333333
Q ss_pred HHHHHHHH
Q psy4795 221 VLVTGFCG 228 (285)
Q Consensus 221 ~lv~~~v~ 228 (285)
..+++.+.
T Consensus 364 ~~~~~~~~ 371 (382)
T TIGR00902 364 MAIIAAAA 371 (382)
T ss_pred HHHHHHHH
Confidence 33333333
No 46
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.24 E-value=7.5e-11 Score=111.52 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795 93 VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQV 172 (285)
Q Consensus 93 ~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~ 172 (285)
..+.|++...+.++..+++++.|+++||+|||+++..+.++..++..+..... +..+.+.+++..++.|++.+...+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA-FALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHhHH
Confidence 46789999999999999999999999999999999999888777766654432 23455677888999999999999999
Q ss_pred ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHh
Q psy4795 173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYS 206 (285)
Q Consensus 173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s 206 (285)
++++.+.+|+++ +.+.++++...++|..++..++
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999998655 9999999999999999999998
No 47
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.24 E-value=1.4e-10 Score=109.95 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=103.7
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. ++.|+.+..+.++..+++++.|+++||+|||+++..+.++..++.+.... .++++.+++..++.|++.+
T Consensus 48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g 123 (394)
T PRK10213 48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF----ANSFSLLLIGRACLGLALG 123 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH----HChHHHHHHHHHHHHHhhH
Confidence 34565 57899999999999999999999999999999999999988877655444 3567888888999999999
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
...+...+++.+.+|+++ +.+.+......++|..+|..+++.+..
T Consensus 124 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 124 GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998766 999999999999999999999988754
No 48
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.24 E-value=1.4e-09 Score=103.09 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=95.4
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
|.|+++.+|. .+.|+.+...+++..+++++.|++.||.++++++..+... .+....+.. .++++...+..+++
T Consensus 229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~----~~~~~~~~~~~~~~ 303 (393)
T PRK11195 229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMAL----QHSLLPAYPLLILI 303 (393)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHH----HhHHHHHHHHHHHH
Confidence 4567777777 5789999999999999999999999999999888877543 222222211 23456566677789
Q ss_pred HHhhhhhhcccccceeeeccccc--hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRNK--EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~~--~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|++.+..+++.++.+.+..|++. +.++++.++.+++|..++.++.+.+
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766643 8899999999999999999988765
No 49
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.24 E-value=1.4e-09 Score=102.21 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=95.2
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
|.|.|.++ .|. ..+|+......++..+++++.|+++||+|||+++..+..+..++..... + . ........
T Consensus 222 ~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~-~---~~~~~~~~ 293 (381)
T PRK03633 222 LMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---S-Q---AAMAPALF 293 (381)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---h-h---HHHHHHHH
Confidence 34777765 465 4688888899999999999999999999999998888777666554332 1 1 22234456
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
++|++.+...+..++...+..|+++ +.+.+.+++..++|..+|..+++.+-.+.
T Consensus 294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~ 348 (381)
T PRK03633 294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY 348 (381)
T ss_pred HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7787777778888888889888766 77778888999999999999999875543
No 50
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.24 E-value=1.1e-10 Score=108.40 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=102.6
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. .++|++...+.++..+++++.|+++||+|||+.+..+.++..++.+.... .++++.+++..++.|++.+
T Consensus 33 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~ 108 (385)
T TIGR00710 33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL----SNNIETLLVLRFVQAFGAS 108 (385)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHcchh
Confidence 44565 57899999999999999999999999999999999998887777665544 2456778888899999999
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
...+..++++.+.+|+++ +.+++..+...++|..+|..+++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 154 (385)
T TIGR00710 109 AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV 154 (385)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765 999999999999999999999887654
No 51
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.23 E-value=2.3e-09 Score=100.81 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccC--CC--C-----------c--chHHHH-----
Q psy4795 22 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH--PN--N-----------P--KIFFTI----- 79 (285)
Q Consensus 22 l~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~--~~--~-----------p--~l~~~~----- 79 (285)
.....++..++.++.+.+.+..|+|..+....++.++..+....+.|+ ++ . + ...+..
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFGN 212 (382)
T ss_pred HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHHH
Confidence 344455566666777777788898755554444444432222222221 11 0 0 111110
Q ss_pred ------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCCh
Q psy4795 80 ------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNP 151 (285)
Q Consensus 80 ------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~ 151 (285)
..|.+.|+.+..|. .+.++.....+++..++.++.|+++||+|+++++..+..+..++.+.+.... ++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~---~~~ 289 (382)
T PRK10091 213 AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG---GMK 289 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH---hhH
Confidence 11234566665665 5788999999999999999999999999999999888777666654433322 223
Q ss_pred HHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
+...+..++.+++.....++......+..++++..+.+..+...++|.++|..+++.+...
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 290 TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHc
Confidence 4445555566666555555444444443333333333345677899999999999887654
No 52
>KOG1330|consensus
Probab=99.23 E-value=6e-13 Score=126.83 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=112.4
Q ss_pred CCCcchHHHHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795 70 PNNPKIFFTISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH 147 (285)
Q Consensus 70 ~~~p~l~~~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~ 147 (285)
.+...++..... ++..+++ +..|++...+.++.++++|+.|+|+||++||.++.+|..+..++.+..-+.
T Consensus 47 ~Dr~~iagv~~~-----v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--- 118 (493)
T KOG1330|consen 47 ADRYTIAGVLKE-----VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--- 118 (493)
T ss_pred hhhhhhhhhhHH-----HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH---
Confidence 345555554432 2344555 678899999999999999999999999999999999999999888775552
Q ss_pred CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
..+|.+.++..+.|+|.+.+.+..+++++|+||+++ +.+++++++..+.|+.+|+.+++..
T Consensus 119 -~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v 180 (493)
T KOG1330|consen 119 -NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV 180 (493)
T ss_pred -HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence 568999999999999999999999999999999876 9999999999999999999998774
No 53
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.23 E-value=6.5e-11 Score=113.88 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=103.1
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
.+.+|. .+.++++..+.++..++.++.|+++||+|||+++..+.++..++.+.... .++++.+++..++.|++.
T Consensus 29 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~G~~~ 104 (485)
T TIGR00711 29 AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV----APNLELMIIFRVIQGFGG 104 (485)
T ss_pred HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHhhh
Confidence 344665 57889999999999999999999999999999999998887777655443 356778888899999999
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+...+..++++.+.+|+++ +.+.+.+....++|..+|..+++.+..
T Consensus 105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 9999999999999998655 999999999999999999998887643
No 54
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.22 E-value=1.4e-10 Score=111.17 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=101.6
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL 160 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l 160 (285)
.|.+.+ .+|. .+.|++...+.++..+++++.|+++||+|||+++.++.++..++.+.... .++++.+++..++
T Consensus 46 ~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l 120 (434)
T PRK11663 46 MPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF----SSSLWAFALLWVL 120 (434)
T ss_pred hHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHH
Confidence 344443 3666 57899999999999999999999999999999999998887777655443 3456777777788
Q ss_pred HHHhhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.|++.|...+...+++.+.+|++ ++.+.++++..+++|.+++..+.+.+.
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888899999999876 499999999999999999988877654
No 55
>PRK03545 putative arabinose transporter; Provisional
Probab=99.22 E-value=1.4e-10 Score=109.14 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=102.1
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
.+.+|. .++|+....+.++..++++..|+++||+|||+++..+.++..++.+...+ .++++.+++..++.|++.
T Consensus 36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~~ 111 (390)
T PRK03545 36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL----AWNFTVLLISRIGIAFAH 111 (390)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHH
Confidence 445665 68899999999999999999999999999999999998887777655544 346788888889999999
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+...+..++++.+.+|+++ +.+.++++...++|.++|..+++.+.
T Consensus 112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999998655 99999999999999999999887754
No 56
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.22 E-value=1.7e-09 Score=102.96 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
.+.|++..+..+++.++.+++|+++||+|||+.+..+.++..+......+ .++++.+.....+.|++.+...+...
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF----ATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988888777666554433 23456667778888888888888778
Q ss_pred cceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH
Q psy4795 174 GLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.++.+.+|++. +.+++. +++..++|..++..+.+.+...
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~ 378 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS 378 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888776 666654 7888999999999998887653
No 57
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.22 E-value=2.3e-09 Score=103.38 Aligned_cols=160 Identities=11% Similarity=-0.010 Sum_probs=96.1
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHH-HHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMA-LGFIVHCCLIWILVVWRPHPNNPKIFFT 156 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~ 156 (285)
|.|.|+++..|. ..++.....+++++.++.+++|+++||+ |||+... ....+..++... +...+ .++.+...+
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~ 352 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV-YWLNP-AGNPTVDMA 352 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH-HHHhc-ccChHHHHH
Confidence 448888877665 5788888899999999999999999999 5554322 222222222222 22222 233333333
Q ss_pred HHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHH-HHHHhhhhhHH----HHHHHHHHHHHHHHHHHH
Q psy4795 157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVI-AYAYSTHLCAR----MKLYVMGVVLVTGFCGYV 230 (285)
Q Consensus 157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~i-g~~~s~~l~~~----~~l~il~~~lv~~~v~~~ 230 (285)
...+.|.+........++...+.+|++. +.+.+.++...++|..+ |..+.+.+..+ .-++++.+..+++.+...
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3444444322222223445668888765 99999999999998655 67777776543 334455555666655555
Q ss_pred HHHHHHHHhHHhh
Q psy4795 231 IVEVRHMMKARRQ 243 (285)
Q Consensus 231 ~~e~~~~~~~~~~ 243 (285)
++.+-++||++|.
T Consensus 433 ~~~~~~~~~~~~~ 445 (452)
T PRK11273 433 VVMIGEKRHHEEL 445 (452)
T ss_pred HHhccccchHHHH
Confidence 5554444444333
No 58
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.22 E-value=2.3e-10 Score=108.39 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=104.0
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. .+.|++...+.++..+++++.|+++||+|||+++..+..+..++.+...+ .++++.+++..++.|++.+
T Consensus 37 ~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~----a~~~~~ll~~r~l~Gig~~ 112 (393)
T PRK09705 37 QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL----YPQSALLLSSALLGGVGIG 112 (393)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH----CcchHHHHHHHHHHHhHHH
Confidence 34555 67899999999999999999999999999999999999999888877655 3456777888999999999
Q ss_pred hhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 167 VWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
..++..++++.+.+|++++.+.+.+....++|..+|..+++.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~ 157 (393)
T PRK09705 113 IIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQ 157 (393)
T ss_pred HHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998777999999999999999999998887643
No 59
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.22 E-value=3.3e-09 Score=100.81 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhc-ccCCC---------------Cc-chHHHH-
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVW-RPHPN---------------NP-KIFFTI- 79 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~-e~~~~---------------~p-~l~~~~- 79 (285)
|.......++..++.++.|.+. .+|++..++...++.++. +...... |++++ ++ ...+..
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLT 216 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHH
Confidence 3444556677777888888887 778876555544443332 2222222 21111 01 111100
Q ss_pred -----------hhhhhhhhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHHHhCC
Q psy4795 80 -----------SGLWGAYISCALGV-SSVGYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCLIWILVVWRP 146 (285)
Q Consensus 80 -----------~~ft~~Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsD-riGrk~~i~~g~~l~~i~~~~l~~~~p 146 (285)
..+.|.|.++..+. ..+|+.....+++...+....+++.| |++.++.+..+.++..++..++..
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~--- 293 (400)
T PRK11646 217 LTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM--- 293 (400)
T ss_pred HHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---
Confidence 11347777765554 56777777777766655555566655 577677677777666665544332
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 147 HPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 147 ~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
.++.+...+...++|++.+...++.++++.+..|+++ +++++.+++.+++|..+|..+++.+..+.
T Consensus 294 -~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 294 -VSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 2334555566678889999999999999999998765 99999999999999999999999886553
No 60
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.22 E-value=1.7e-09 Score=106.83 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=107.9
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
|.+..+.+|. ...|+++.++++|.++++.+.+++.+|+++++++..+.+..+++.+.+.+ .++.+...+..++.
T Consensus 242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal----~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL----SPSFWLALIALFLA 317 (524)
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc----chHHHHHHHHHHHH
Confidence 7777777776 56889999999999999999999999999999988888777766554433 34667888888999
Q ss_pred HHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
|++....++..++.+-...|++. ++++|++++..+.++.+|.++.+.+....
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~ 370 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF 370 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987 99999999999999999999988875543
No 61
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.22 E-value=1.3e-10 Score=110.12 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=101.7
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
+.++.+|. .+.++....+.++..+++++.|+++||+|||+++..+.++..++.....+ .++.+.+++..++.|+
T Consensus 43 ~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~ 118 (426)
T PRK12307 43 LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL----ASGVIMLTLSRFIVGM 118 (426)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHH
Confidence 44566676 46889999999999999999999999999999999999888877665444 2457788888999999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+.|...+...+++.+.+|+++ +.+.+.+....++|..++..+.+.+
T Consensus 119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998765 8999999999999999888776654
No 62
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.21 E-value=1.1e-09 Score=102.16 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=99.3
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL 160 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l 160 (285)
.|.|+.+.+|. .+.+.+....+++..+++++.|+++||+|||+.+..+.++..+.....+.. .++.+...+..++
T Consensus 261 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 337 (405)
T TIGR00891 261 LPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI---GANVAVLGLGLFF 337 (405)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh---CCchHHHHHHHHH
Confidence 36677766676 578888999999999999999999999999999888876654333332222 2344555555566
Q ss_pred HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMK 214 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~ 214 (285)
.|++.+...+..++.+.+.+|++. +++.++.+...++|..++..+.+.+..+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 676666666778889999998766 999999999999999999999988877544
No 63
>PRK10133 L-fucose transporter; Provisional
Probab=99.21 E-value=4.8e-10 Score=108.13 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=103.6
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
+.|.+ ++.+|. .+.|+.+..+.++..+++++.|+++||+|||+++..+.++..++.+....... .++++.+++..+
T Consensus 48 ~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-a~~~~~ll~~r~ 125 (438)
T PRK10133 48 LLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-IMNYTLFLVGLF 125 (438)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHH
Confidence 44544 667777 57999999999999999999999999999999999999988887765422111 456788888899
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
+.|+|.|..++..|+++.+..|+++ +...+.++...++|..+|..+++.
T Consensus 126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998766665 446889999999999999988764
No 64
>PRK11043 putative transporter; Provisional
Probab=99.21 E-value=3.5e-09 Score=99.84 Aligned_cols=191 Identities=10% Similarity=0.020 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcccCCCCc---c-hH----------------H-
Q psy4795 20 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPHPNNP---K-IF----------------F- 77 (285)
Q Consensus 20 ~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e~~~~~p---~-l~----------------~- 77 (285)
......+++..+..+..|.+.+++|++..++...++.++. +..+...|+++++. . .. +
T Consensus 134 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (401)
T PRK11043 134 TIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFA 213 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHH
Confidence 3334455666677778888888899975554434444333 22232333221110 0 00 0
Q ss_pred -------HHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH-HhCCC
Q psy4795 78 -------TISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-VWRPH 147 (285)
Q Consensus 78 -------~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~-~~~p~ 147 (285)
....+.|.|.++ .|. .+.|+.+....++..+++.+.+++.||+|+|+....+.+...++...+. .....
T Consensus 214 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS 292 (401)
T ss_pred HHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001233566654 566 4678888888999999999999999999999877666555444433221 11111
Q ss_pred CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.++.+...+...++|++.+..++..++...+..|++++++.++++..+..+...+..+.+.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2344555555677888988888888888778888888999999999988887777777666543
No 65
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.20 E-value=1.2e-09 Score=100.93 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=98.0
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHH-HHHHhCCCCCChHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW-ILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~-~l~~~~p~~~~~~~~~~~~ 158 (285)
+.|.|.++.+|. .+.+..+....+++.++.++.|+++||+|||+.+..+..+..+... ....... +++.+..+...
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD-SGSFTLFFFLV 319 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHH
Confidence 457788777776 4688889999999999999999999999999987755544433322 2222222 34556666667
Q ss_pred HHHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.+.|++.+..++..++.+.+.+|++. +.+.+. +++...+|..++..+++.+..+
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence 78888888899999999999999765 888885 6677788888998888877554
No 66
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.20 E-value=2.7e-09 Score=98.11 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=95.4
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChh--HHHHHHHHHHH--HHHHHHHhCCCCCChHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSP--LMALGFIVHCC--LIWILVVWRPHPNNPKIFF 155 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~--~i~~g~~l~~i--~~~~l~~~~p~~~~~~~~~ 155 (285)
+.|.|+++.+|. .+.++.....+++..+++++.|+++||+|||+ ........... ............++.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (399)
T TIGR00893 237 WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAAL 316 (399)
T ss_pred HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 347788777776 46788999999999999999999999999996 22111111111 1111111121122333333
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA-----RMKLYVMGVVLVTGFCGY 229 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~-----~~~l~il~~~lv~~~v~~ 229 (285)
....+.+.+.+ .++...++..+.+|++. +.+.++++..+++|..++..+.+.+.. ....++..++.+++.+.+
T Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 317 ALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 33334444444 78888999999998765 999999999999999999998887643 223334444444444444
No 67
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.20 E-value=1.5e-09 Score=108.06 Aligned_cols=193 Identities=16% Similarity=0.229 Sum_probs=141.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-hHHHHHHHHHHHHHHHHHHhccc--CCCCcchHHHH----hhhh--
Q psy4795 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRP--HPNNPKIFFTI----SGLW-- 83 (285)
Q Consensus 13 ~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~~~~~~g~~~~~~~l~~fl~~e~--~~~~p~l~~~~----~~ft-- 83 (285)
.-+||+|..++..|++.++.++..|. -..++| ++-++.-+++.++++++|.+||. ++++|++++.+ +.|.
T Consensus 237 ~~lD~IG~~L~~~Gl~LfLlgl~wgG-~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~ 315 (599)
T PF06609_consen 237 KELDWIGIFLFIAGLALFLLGLSWGG-YPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAAL 315 (599)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhccC-CCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHH
Confidence 46999999999999999999999876 012578 58888888888888999999995 34577666544 1111
Q ss_pred ------------------hhhhhhccc-----hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHH-HHHHHHHHHHHH
Q psy4795 84 ------------------GAYISCALG-----VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLM-ALGFIVHCCLIW 139 (285)
Q Consensus 84 ------------------~~Y~~~~lg-----~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i-~~g~~l~~i~~~ 139 (285)
|.......+ ...+++.....+.+..+++.+.|.+..+++|-|.. +++.+++.+..-
T Consensus 316 lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~G 395 (599)
T PF06609_consen 316 LVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCG 395 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 222222222 22467888889999999999999999988886554 567666665555
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 140 ILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 140 ~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
.+....|++.+.+ +...++.|++.|....+......-..|++. +.+.++.-..|.+|.++|.++...
T Consensus 396 ama~~~~~n~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 396 AMAAVRPDNKNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred HHHHccCCCcchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5666666555433 455667778888777777777766778877 999999999999999999887644
No 68
>PRK15075 citrate-proton symporter; Provisional
Probab=99.20 E-value=2.2e-09 Score=102.84 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=87.4
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
|.|.|+++.+|. .+.++..++.++++.++++++|+++||+|||++...+..+..+...+...+.+..++.........
T Consensus 260 ~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T PRK15075 260 YTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVEL 339 (434)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 357888877777 457788889999999999999999999999999887655443322222212111233333333345
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+.|++.+.+++..+.+..|.+|++. +.+.++ +++.+.++..++..+.+.+..
T Consensus 340 ~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 340 WLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5567777777777788899998876 888886 444554545566666655544
No 69
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.20 E-value=3.2e-09 Score=100.89 Aligned_cols=124 Identities=21% Similarity=0.178 Sum_probs=96.3
Q ss_pred hhhhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 84 GAYISCALGV-SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 84 ~~Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
+.|.+..+|. ...+.......++.++++++.|+++||+|||+++..+.++..++...+.+ .+ ++.+..++..++.|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~g 322 (437)
T TIGR00792 246 VYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF-AG--SNLPLILVLIILAG 322 (437)
T ss_pred heeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cc--hhHHHHHHHHHHHH
Confidence 3444445553 45667777789999999999999999999999999998877776655443 22 34556666677889
Q ss_pred Hhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 163 VGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
++.+..++..++++++..| +++ +.+++++++.+++|.++|..+.+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764 333 88899999999999999998877753
No 70
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.19 E-value=4.8e-09 Score=97.35 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHh-cccCCCCc-------------------chHH
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVV-WRPHPNNP-------------------KIFF 77 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~-~e~~~~~p-------------------~l~~ 77 (285)
|.......++..++....|.+.++.|++..++...+..++. +..+.. .|+++++. ...+
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGY 211 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHH
Confidence 34444566666777788888888889875554433333333 222222 22211110 0000
Q ss_pred HH------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH
Q psy4795 78 TI------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV 143 (285)
Q Consensus 78 ~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~ 143 (285)
.. ..+.|.|+++..|. .+.|++.....++..+++++.|+++||+|||+.+..+..+..++...+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 212 ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI 291 (385)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11236677766776 56888999999999999999999999999999988887766665544332
Q ss_pred hC-CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHH-HHHHHHHHh
Q psy4795 144 WR-PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESV-GFVIAYAYS 206 (285)
Q Consensus 144 ~~-p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~l-G~~ig~~~s 206 (285)
.. +..++.+..+....+.|++.+...+.......+.+|++++++.++++..+.. |...+...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 292 TAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1123344455557778899998888888888888887779999988877765 555555544
No 71
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.19 E-value=5.9e-10 Score=105.08 Aligned_cols=118 Identities=15% Similarity=0.068 Sum_probs=99.7
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+ .++++.+++..++.|++.+
T Consensus 43 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~~ 118 (406)
T PRK11551 43 QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ----AWDFPSLLVARLLTGVGLG 118 (406)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhHH
Confidence 34565 57899999999999999999999999999999999998877766554433 2456778888999999999
Q ss_pred hhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 167 VWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
...+..++++.+.+|++ ++.+.++++...++|..++..++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 119 GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999765 599999999999999999988876543
No 72
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.19 E-value=2.3e-09 Score=98.43 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=94.2
Q ss_pred ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh
Q psy4795 90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV 167 (285)
Q Consensus 90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~ 167 (285)
.+|. ++.+......+++..+++++.|+++||+|||+.+.++.++..++...+.. .+ ..+.+..+....+.|++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~g~ 311 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF-IP-MLNDVLFLATVALVFFTWGG 311 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-cc-cchhHHHHHHHHHHHHHhcc
Confidence 3555 46788899999999999999999999999999998888777776655433 22 12223344445677888887
Q ss_pred hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.++..+++..+.+|+++ +++.+.++...++|..++..+.+.+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888999998776 999999999999999999998887653
No 73
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.19 E-value=2.8e-10 Score=108.92 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=104.0
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
++.+|. .+.|++...+.++..++++..|++.||+|||+++..+.++..++........ ..++++.+++..++.|+|.
T Consensus 30 ~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-~~~~~~~~l~~~~l~G~g~ 108 (410)
T TIGR00885 30 QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-EIMNYTLFLVGLFILTAGL 108 (410)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHhhH
Confidence 566666 5799999999999999999999999999999999999998888765543222 2456778888899999999
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|..++..|+++.+..|+++ +...++.+..+++|..+|..+++.+
T Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 109 GFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888766 8889999999999999999998776
No 74
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.18 E-value=5.5e-09 Score=98.32 Aligned_cols=203 Identities=15% Similarity=0.071 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHH-hcccCCC-------------------Cc-chHHH-
Q psy4795 21 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-VWRPHPN-------------------NP-KIFFT- 78 (285)
Q Consensus 21 il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl-~~e~~~~-------------------~p-~l~~~- 78 (285)
.-....++..++.++.|.+.+++|++..++...+...+.++..+ ..|++|+ ++ ...+.
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 212 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLL 212 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHH
Confidence 33444577778888888888899997655544433333222222 1121111 00 00000
Q ss_pred -----------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC
Q psy4795 79 -----------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 145 (285)
Q Consensus 79 -----------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~ 145 (285)
...+.|.|.++ .|. .+.|..+.+..++..+..++.|++.||+|+|+.+..+.+...+.++.+..
T Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~-- 289 (382)
T PRK11128 213 CVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS-- 289 (382)
T ss_pred HHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 01233566654 565 46888888889999999999999999999999999888877776554432
Q ss_pred CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy4795 146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFR-LWESVGFVIAYAYSTHLCARMKLYVMGVVLVT 224 (285)
Q Consensus 146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~-l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~ 224 (285)
.++++.+++..+++|++.+..++....++.+..|+++++..+.++ +.+++|.++|..+++.+..+...+.......+
T Consensus 290 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~ 367 (382)
T PRK11128 290 --TTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALV 367 (382)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 346677788899999999999888888887775555577888776 66788889999999998765433333333333
Q ss_pred HHHH
Q psy4795 225 GFCG 228 (285)
Q Consensus 225 ~~v~ 228 (285)
+.++
T Consensus 368 ~~~~ 371 (382)
T PRK11128 368 ALPA 371 (382)
T ss_pred HHHH
Confidence 3343
No 75
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.18 E-value=5.5e-10 Score=103.64 Aligned_cols=118 Identities=21% Similarity=0.197 Sum_probs=98.4
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
++.+|. ++.|+....+.++..+++++.|+++||+|||+++..+.++..++.+.. . .++.+.+++..++.|++.
T Consensus 27 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~g~ 101 (355)
T TIGR00896 27 RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S----APGTALLFAGTALIGVGI 101 (355)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H----hccHHHHHHHHHHHHHHH
Confidence 345565 679999999999999999999999999999999999887766655443 2 234567777788999999
Q ss_pred hhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 166 AVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+...+..+..+.+.+|++++.+.+.++..+++|..++..+.+.+-
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 102 AIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred HHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888989887799999999999999999988876653
No 76
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.18 E-value=5.6e-10 Score=107.61 Aligned_cols=119 Identities=10% Similarity=0.169 Sum_probs=94.3
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
|+.+. |. .+.|+++..+.++..+++++.|+++||+|||+++..+.++..+..+.+.+.....++.+..++..++.|+
T Consensus 54 ~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi 132 (452)
T PRK11273 54 YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 132 (452)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 34444 65 6789999999999999999999999999999999999888777766544432223456677777889999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHH-HHHHH
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFV-IAYAY 205 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~-ig~~~ 205 (285)
+.|...+.....+.+.+|+++ +.+.++++...++|.. .+..+
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 133 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999888888888888888765 9999999999998864 45554
No 77
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.18 E-value=3e-09 Score=103.62 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChh-----H--HHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSP-----L--MALGFIVHCCLIWILVVWRPHPNNPKI 153 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~-----~--i~~g~~l~~i~~~~l~~~~p~~~~~~~ 153 (285)
.|.|+.+..|. ...+.+....++++.++.+++|+++||+|||+ . ..+...+..+.. +.... .++.+.
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~--~~~~~--~~~~~~ 350 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFC--IWLGR--ANSLGA 350 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH--HHhcc--cchHHH
Confidence 36777766676 56888999999999999999999999998752 2 212222221111 22211 233444
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHH
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTH---LCARMKLYVMGVVLVTGFCGYV 230 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~---l~~~~~l~il~~~lv~~~v~~~ 230 (285)
..+...+++++.+..++...++..+..|++++.+.++.+...++|..++..+-.. .....-+++..++++++.+...
T Consensus 351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 351 AIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 4445556666665566666666777777777888888877777777666444221 1123335566667777777777
Q ss_pred HHH
Q psy4795 231 IVE 233 (285)
Q Consensus 231 ~~e 233 (285)
.+.
T Consensus 431 ~~~ 433 (476)
T PLN00028 431 FIH 433 (476)
T ss_pred hee
Confidence 765
No 78
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.17 E-value=5.3e-10 Score=107.26 Aligned_cols=117 Identities=10% Similarity=0.143 Sum_probs=94.5
Q ss_pred ch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhh
Q psy4795 92 GV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQ 169 (285)
Q Consensus 92 g~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~ 169 (285)
|+ .+.|+.+..+.++..+++++.|+++||+|||+++..+.++..++.+.........++.+..++..++.|++.|...
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 55 6789999999999999999999999999999999998888777765543321112345566666788899999888
Q ss_pred cccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 170 TQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 170 ~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
++....+.+.+|+++ +.+.++++...++|..++..+.+.
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 888899999997655 999999999999999888766443
No 79
>KOG3097|consensus
Probab=99.17 E-value=6.8e-11 Score=108.40 Aligned_cols=98 Identities=54% Similarity=1.054 Sum_probs=92.8
Q ss_pred HHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795 77 FTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT 156 (285)
Q Consensus 77 ~~~~~ft~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~ 156 (285)
|...+|++.|+.|.+|++++|++|.++++++.+++.+.|.|+.++||.+....+.+.|......+++|.|.+.+.+.+++
T Consensus 293 F~~~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~ 372 (390)
T KOG3097|consen 293 FLCADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYV 372 (390)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccc
Q psy4795 157 ISGLWGVGDAVWQTQVNG 174 (285)
Q Consensus 157 ~~~l~Gig~g~~~~~~~a 174 (285)
...+||+||+.|++++|.
T Consensus 373 ~aalwgv~d~vw~t~in~ 390 (390)
T KOG3097|consen 373 AAALWGVGDAVWKTQING 390 (390)
T ss_pred ehhhcCccHHHHHhhcCC
Confidence 999999999999999874
No 80
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.17 E-value=6.9e-09 Score=101.58 Aligned_cols=193 Identities=14% Similarity=0.043 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHh-hhCchHHHHHHHHHHHHH-HHHHHhcccCCC----C--------cchHHH------
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCL-IWILVVWRPHPN----N--------PKIFFT------ 78 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~-~~G~~~~~~~g~~~~~~~-l~~fl~~e~~~~----~--------p~l~~~------ 78 (285)
|.....+.++..+.+...+.+.+ ..|||..++...+..++. +..+...||++. . +...+.
T Consensus 146 ~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (491)
T PRK11010 146 AISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAW 225 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHH
Confidence 44566667777777877788888 469986666544444443 222333343210 0 000000
Q ss_pred --H-------------hhhhhhhhhhccch--hHHHHHHH-HHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH
Q psy4795 79 --I-------------SGLWGAYISCALGV--SSVGYVMI-CFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI 140 (285)
Q Consensus 79 --~-------------~~ft~~Y~~~~lg~--~~~G~v~~-~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~ 140 (285)
. ..+.+.|+.+.+|. ++.|++.. ...++.+++.+++|+++||+|||+.+.++.++..+..+.
T Consensus 226 ~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~ 305 (491)
T PRK11010 226 LILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAG 305 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0 01235566666676 56787764 445799999999999999999998877766655554332
Q ss_pred HHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 141 LVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 141 l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.......+++.+......++..++.|+..+...++.++..|++. ++.+++.+...++|..++..+++.+..
T Consensus 306 ~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 306 YWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111112344444444555444555555556777788887766 889999999999998877667766544
No 81
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.17 E-value=5e-09 Score=100.39 Aligned_cols=128 Identities=13% Similarity=-0.014 Sum_probs=79.0
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
|.|.|+.+.+|. .+.+.......++..+++++.|+++||+|||+++..+.++..+...+.....+..++....+....
T Consensus 265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T PRK10406 265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM 344 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 457788777776 467777888888889999999999999999998877665543333332221121223333222222
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhh
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHL 209 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l 209 (285)
+.+++.+...+..+++..|.||++. +++.++.+...++ +......+...+
T Consensus 345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l 396 (432)
T PRK10406 345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL 396 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence 2233444455566778899999875 8999976655443 233344444444
No 82
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.16 E-value=2.6e-10 Score=109.76 Aligned_cols=115 Identities=11% Similarity=0.002 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--------CCCCCChHHHHHHHHHHHHhh
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--------RPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--------~p~~~~~~~~~~~~~l~Gig~ 165 (285)
.+.|++...+.++..+++++.|+++||+|||+++.++.++..++.+...+- .++.+..+.+++..++.|++.
T Consensus 55 ~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (479)
T PRK10077 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGV 134 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhH
Confidence 578899999999999999999999999999999999988877665543321 011222455667889999999
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
|...+...+++.|.+|+++ +.+.+.++....+|..++...+..
T Consensus 135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 178 (479)
T PRK10077 135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF 178 (479)
T ss_pred hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 999999999999999888776543
No 83
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.16 E-value=2e-09 Score=110.22 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=100.1
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
++++.+|+ .+.++++..+.++.+++++++|+++||+|||++++++.++..++.++..+ .++++.+++..++.|+
T Consensus 192 ~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af----a~s~~~llv~R~l~G~ 267 (742)
T TIGR01299 192 SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF----VQGYGFFLFCRLLSGF 267 (742)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 34455665 57889999999999999999999999999999999998877776655544 2356788888999999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
+.|...+..++++.+.+|+++ +.+.+..+.+..+|..++..++..
T Consensus 268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766 899999999999999988876544
No 84
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.16 E-value=4.6e-10 Score=105.55 Aligned_cols=117 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh
Q psy4795 90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV 167 (285)
Q Consensus 90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~ 167 (285)
.+|. .++++....+.++..+++++.|+++||+|||+.+..+.++..++...... .++.+..++..++.|++.+.
T Consensus 32 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~g~~~~~ 107 (392)
T PRK10473 32 DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL----AETSSLFLAGRFLQGIGAGC 107 (392)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhhhH
Confidence 3555 57889999999999999999999999999999999998887777655443 24566677778899999999
Q ss_pred hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..+..++++.+.+|+++ +.+.+.++...++|..++..++..+.
T Consensus 108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 108 CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999997655 99999999999999999888877653
No 85
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.16 E-value=7.2e-09 Score=99.40 Aligned_cols=128 Identities=15% Similarity=-0.008 Sum_probs=80.1
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc--C-ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI--G-RSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri--G-rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
.|.|+.+..|. .+.+.....+.++..++.++.|+++||+ + |++......+...... ..+...+. .+.......
T Consensus 266 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 343 (434)
T PRK11663 266 GNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV-GSLWLMPF-ASYVMQAAC 343 (434)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHH-HHHHHccc-ccHHHHHHH
Confidence 46777776777 4678889999999999999999999998 3 3333222211111112 11122232 233333333
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.+++|++....++.......+.+|++. +.+.++.+...++|.+++....+.+-..
T Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~ 399 (434)
T PRK11663 344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI 399 (434)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 444554332222223445678887655 9999999999999999998887776543
No 86
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.16 E-value=8.7e-09 Score=100.13 Aligned_cols=126 Identities=18% Similarity=0.167 Sum_probs=94.5
Q ss_pred hhhhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGV-SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~-~p~~~~~~~~~~~~~l~ 161 (285)
+.|.+..++. +..+.++...+++.+++.++.++++||+|+|+.+..+.++..++.+..+.. ...+++.+.+++..++.
T Consensus 255 ~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 334 (473)
T PRK10429 255 IYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILL 334 (473)
T ss_pred eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3344444454 456677777889999999999999999999999988887656554443322 11234566677777888
Q ss_pred HHhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|++.+..++...+++.|..| +++ +..+|.+.+.+.+|+++|..+.+.+
T Consensus 335 g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 335 NIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865 233 5689999999999999998877664
No 87
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.15 E-value=5.8e-09 Score=97.06 Aligned_cols=188 Identities=11% Similarity=0.083 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHH-HhcccCCCC---c------------------chH
Q psy4795 20 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWIL-VVWRPHPNN---P------------------KIF 76 (285)
Q Consensus 20 ~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~f-l~~e~~~~~---p------------------~l~ 76 (285)
.......++..+..+..+.+.++.|++..++...++.++. +... ...|+++++ + ...
T Consensus 119 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (377)
T PRK11102 119 FVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLG 198 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHH
Confidence 3344556667777778888888889875555444444333 2222 222321110 0 000
Q ss_pred HHH------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH
Q psy4795 77 FTI------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV 142 (285)
Q Consensus 77 ~~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~ 142 (285)
+.. ..+.|.|..+..|. .+.|++....+++..+++++.|++.||+|||+.+..+..+..+..+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 278 (377)
T PRK11102 199 YMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 000 00124455555565 5788999999999999999999999999999999888776544332222
Q ss_pred HhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHH-HHHHHHHHHHhh
Q psy4795 143 VWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWE-SVGFVIAYAYST 207 (285)
Q Consensus 143 ~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~-~lG~~ig~~~s~ 207 (285)
.....+.+.+...+...+.+.+.+...+.....+.+..|++++.+.+.++..+ .+|..++...+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 279 VSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111223444444444555555665655566677778877788888766553 466666666543
No 88
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.15 E-value=1.2e-08 Score=96.85 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=92.9
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHHhC-CCCCChHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHCCLIWILVVWR-PHPNNPKIFFTI 157 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~i~~~~l~~~~-p~~~~~~~~~~~ 157 (285)
|.|.|.+. +|. .+.+.+....++++.+++++.|+++||+|||+... .+.+...++...+.... ...++.+..++.
T Consensus 244 ~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 244 FLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 45777754 676 45678888899999999999999999999988764 33333333222222211 112345666677
Q ss_pred HHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
.+++|++.+...+ ..+.+.+..|++++.+.++++..+++|..++..+.+.+...+
T Consensus 323 ~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 323 AIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF 377 (402)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888988877654 455666777777799999999999999999999988876553
No 89
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.15 E-value=2e-09 Score=99.72 Aligned_cols=178 Identities=11% Similarity=0.034 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhC--------chHHHHHHHHHHHHHHHH-HH-hcccCCCC----------------
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIG--------RSPLMALGFIVHCCLIWI-LV-VWRPHPNN---------------- 72 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G--------~~~~~~~g~~~~~~~l~~-fl-~~e~~~~~---------------- 72 (285)
|....++.++..+++.+.+.+..+.| ||..++.+.+..++.+.. +. ..||+.+.
T Consensus 122 ~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 201 (356)
T TIGR00901 122 TIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIRE 201 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Confidence 45566777788888888888888888 887777666655554332 22 22332110
Q ss_pred ----c----chHHHH------------hhhhhhhhhhccch--hHHHHHHHHHH-HHHHHHHhhhhhhhcccCChhHHHH
Q psy4795 73 ----P----KIFFTI------------SGLWGAYISCALGV--SSVGYVMICFG-VVNAICSLLFGTLMKFIGRSPLMAL 129 (285)
Q Consensus 73 ----p----~l~~~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~g-v~~~i~s~l~G~LsDriGrk~~i~~ 129 (285)
+ ...... ..+.|.|+++ +|. ++.|.+..+.+ +...++.+++|+++||+|||+.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~ 280 (356)
T TIGR00901 202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLL 280 (356)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0 000000 0123677766 666 56777777666 5778999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhCCCC-------CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH
Q psy4795 130 GFIVHCCLIWILVVWRPHP-------NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV 197 (285)
Q Consensus 130 g~~l~~i~~~~l~~~~p~~-------~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l 197 (285)
+.++..+......+..++. ++.+......++.+++.+..++..++++.+.+|+++ ++.+++++..+|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 356 (356)
T TIGR00901 281 FGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSAL 356 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Confidence 8877766655433322212 345666777788899999999999999999999877 9999998877663
No 90
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.15 E-value=9.6e-09 Score=96.59 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=79.3
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
|.|.++.+|. .+.+..++..+++.+++.++.|++.||+|||+.+..+.++..++...+.... ..+...........
T Consensus 227 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 304 (392)
T PRK10473 227 PVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLICA 304 (392)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 5566666676 4678899999999999999999999999999999988877666655544422 11112222223333
Q ss_pred HHhhhhhhcccccceeeeccc-cc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRR-NK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~-~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
|++.+.-.+. .....|. ++ +.+.+.+.+.+.+|..++..+.+.+...
T Consensus 305 g~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 305 GFSVGFGVAM----SQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred HHHHHhHHHH----HHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4433322211 1223343 23 7777788888888888887776665443
No 91
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.15 E-value=4.5e-09 Score=112.14 Aligned_cols=194 Identities=9% Similarity=-0.063 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhc-ccCCCC-----------------------
Q psy4795 17 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNN----------------------- 72 (285)
Q Consensus 17 ~~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~-e~~~~~----------------------- 72 (285)
..|....+..++..++.++.|.+....|++..++...+..++.++....+ ++++..
T Consensus 145 a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (1140)
T PRK06814 145 ANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKAD 224 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcC
Confidence 34677788888999999999999998888766544444444332222222 221110
Q ss_pred cchH-HH------------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH
Q psy4795 73 PKIF-FT------------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL 137 (285)
Q Consensus 73 p~l~-~~------------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~ 137 (285)
+.+. .. ...+.|.|+++.+|. ...|+++..++++.++++++.|+++||.++++.+..+.++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLF 304 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHH
Confidence 0000 00 011348888888877 56889999999999999999999998877777666665554443
Q ss_pred HHHHHHhC----------------CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHH
Q psy4795 138 IWILVVWR----------------PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFV 200 (285)
Q Consensus 138 ~~~l~~~~----------------p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ 200 (285)
.+.+.+.. ...++.+.+.+..+++|++.+..+++.++++.+.+|++. +.+++.+++..++|+.
T Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ 384 (1140)
T PRK06814 305 GLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMV 384 (1140)
T ss_pred HHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHH
Confidence 33222210 001345667777888999999999999999999998876 9999999999999999
Q ss_pred HHHHHhhhhh
Q psy4795 201 IAYAYSTHLC 210 (285)
Q Consensus 201 ig~~~s~~l~ 210 (285)
+|....+.+.
T Consensus 385 ig~~~~g~l~ 394 (1140)
T PRK06814 385 AGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHH
Confidence 9998877765
No 92
>PRK10504 putative transporter; Provisional
Probab=99.13 E-value=6.2e-10 Score=107.28 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=103.4
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
...|.|.++ +|. .+.|++...+.++..++++++|+++||+|||+++..+.++..++.+.... .++.+.+++..
T Consensus 31 ~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 105 (471)
T PRK10504 31 TALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL----SGTLNELLLAR 105 (471)
T ss_pred HHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHH
Confidence 345666554 777 46788889999999999999999999999999999887777666654433 24567777889
Q ss_pred HHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
++.|++.+...+...+.+.+.+|+++ +.+.+.++...++|..+|..+++.+.
T Consensus 106 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 106 VLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999998766 89999999999999999999887764
No 93
>PRK11043 putative transporter; Provisional
Probab=99.13 E-value=8.1e-10 Score=104.20 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=97.8
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
++.+|. .++|+....+.++..+++++.|+++||+|||+++..+..+..++.+.... .++.+.+++..++.|++.
T Consensus 33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~ 108 (401)
T PRK11043 33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW----VESAAQLLVLRFVQAVGV 108 (401)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhh
Confidence 345565 57899999999999999999999999999999999988877766655443 245677777788889988
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+...+...+++.+.+|+++ ..+++......++|.+++..+++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 155 (401)
T PRK11043 109 CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN 155 (401)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777777888899998876 788888888888898898888877643
No 94
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.13 E-value=3.3e-10 Score=107.43 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
.+.+++...+.+...+.+++.|+++||+|||+++..+.++..++.+.+... + ++ ++..++.|++.+...+...
T Consensus 38 ~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-~---~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 38 WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-I---HP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-H---HH---HHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998877665544332 1 22 4456788999999999999
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
+++.+.+|+++ +.+.+......++|..+|..+++.+...
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 9999999999999999999999887553
No 95
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.13 E-value=1.4e-08 Score=96.27 Aligned_cols=190 Identities=13% Similarity=0.122 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHh-c-ccCC-C------------Ccch-HH-HH-
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV-W-RPHP-N------------NPKI-FF-TI- 79 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~-~-e~~~-~------------~p~l-~~-~~- 79 (285)
.|......+++..++.++.+.+.+.+|++..++...++.++.+..... . |++. + +|.+ .. ..
T Consensus 146 ~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (394)
T PRK10213 146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAI 225 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHH
Confidence 344555566777788888888888899976665544444443222221 1 2111 0 1100 00 00
Q ss_pred ----------hhh-hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCC
Q psy4795 80 ----------SGL-WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP 146 (285)
Q Consensus 80 ----------~~f-t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p 146 (285)
..+ .|.|. +..|. ...|+.+...+++..+++++.|++.||.+|+.++. +..+.......+..+
T Consensus 226 ~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~-~~~~~~~~~~~l~~~-- 301 (394)
T PRK10213 226 FMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAG-APLVLAVSALVLTLW-- 301 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHH--
Confidence 012 24454 34565 56889999999999999999999999965443343 333333332222222
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 147 HPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 147 ~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.++.+......+++|++.+..++..++.+.+..|++.+.+.+.+....++|..+|..+++.+...
T Consensus 302 -~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~ 366 (394)
T PRK10213 302 -GSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDN 366 (394)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23456677778899999999999999999888887667888888889999999999999998764
No 96
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.13 E-value=1.4e-09 Score=98.55 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
.+.+++.....++..+++++.|+++||+|||+.+..+.++..++.+..... ++.+..++..++.|++.+...+..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~ 109 (352)
T cd06174 34 SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA----SSLWLLLVGRFLLGLGGGALYPAAA 109 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHcccccccHhHH
Confidence 678999999999999999999999999999999999999888877665542 4577888889999999999999999
Q ss_pred cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+++.+.+|++ ++.+++..+...++|..++..+++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 4999999999999999999999887654
No 97
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.13 E-value=1.1e-08 Score=96.33 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=96.9
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
+.|+++.+|. .+.|+......++..+++++.+++.||.+|+...................+.. ..+.+.......+.
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 309 (394)
T PRK11652 231 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFG-VMNVWTLLVPAALF 309 (394)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 4566676776 46788888888999999999999999998433332222211111111111111 23446666677888
Q ss_pred HHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVT 224 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~ 224 (285)
|++.+..++..++...+.+|++++.+.++.+..+++|..++..+.+.+..+..........+.
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (394)
T PRK11652 310 FFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGLLMTLM 372 (394)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 999999999999999899998889999999999999999999988887655444443333333
No 98
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.13 E-value=4.5e-10 Score=105.57 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=103.9
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
.+.|.|..+ +|. .++|+++..+.++..+++++.|+++||+|||+.+..+.++..++.....+ .++++.+++..
T Consensus 27 ~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 101 (381)
T PRK03633 27 TLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL----MVGFWSWLAWR 101 (381)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHH
Confidence 345556553 465 58999999999999999999999999999999999998887776655443 24578888889
Q ss_pred HHHHHhhhhhhcccccceeeeccc-cchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++.|++.+...+...+.+.+..|+ +++.+++.++...++|.++|..+++.+..
T Consensus 102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 102 FVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999888877777777765 44999999999999999999999887644
No 99
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.13 E-value=5.6e-10 Score=105.03 Aligned_cols=119 Identities=8% Similarity=0.053 Sum_probs=100.9
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. .+.|+....+.++..+++++.|+++||+|||+++..+.++..++.+.... .++++.+++..++.|++.+
T Consensus 31 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~r~l~G~~~~ 106 (382)
T PRK10091 31 HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL----SSSYLMLAIGRLVSGFPHG 106 (382)
T ss_pred HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhhH
Confidence 44565 57899999999999999999999999999999999999888877765544 3467888888999999999
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
...+..++.+.+.+|+++ +.+.+.+....++|..+|..+++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 107 AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 988888888889998765 889999999999999998888777643
No 100
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.13 E-value=2.5e-10 Score=107.77 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=92.1
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH--HhCCCC--CChHH
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV--VWRPHP--NNPKI 153 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~--~~~p~~--~~~~~ 153 (285)
..+.|.|+++.+|. .++|+++..+.++..+++++.|+++||+|||+.++.+.+...+...... ...+.. +..+.
T Consensus 22 ~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (396)
T TIGR00882 22 FPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVG 101 (396)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34677888888776 5799999999999999999999999999999999887665554433221 111100 11222
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..+..++.|++.+...+..+++..+.- ++++..++..+.+.++|.++|..+++.+.
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhhhh
Confidence 334456667777777666666554432 23356788999999999999999988763
No 101
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.13 E-value=1.4e-09 Score=103.08 Aligned_cols=125 Identities=18% Similarity=0.319 Sum_probs=96.2
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
+.|.++ +|. .++|+.+..+.++..+++++.|+++||+|||+++..+.++..++...........++++..++..++.
T Consensus 37 ~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 115 (402)
T TIGR00897 37 SPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR 115 (402)
T ss_pred HHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 444433 455 68999999999999999999999999999999999998887776544322111123566777778888
Q ss_pred HHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHH-HHHHHHhhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGF-VIAYAYSTHL 209 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~-~ig~~~s~~l 209 (285)
|++.+...+...+.+.+.+|+++ +.+.+.++...++|. .+|..+++.+
T Consensus 116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 116 GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99888877777777778876654 999999999999997 5777776554
No 102
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.11 E-value=1e-09 Score=104.85 Aligned_cols=119 Identities=14% Similarity=0.062 Sum_probs=98.8
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. ..+++....+.++..+++++.|+++||+|||+++..+.++..++.+.... .++.+.+++..++.|++.+
T Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~Gi~~~ 119 (413)
T PRK15403 44 RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF----TTSMTQFLIARFIQGTSIC 119 (413)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 34455 56778889999999999999999999999999999998887776655544 3467788888999999988
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
...+...+.+.+.+|+++ ..+.+......++|..+|..+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 120 FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777767778888998766 889999999999999999999887653
No 103
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.11 E-value=1e-09 Score=106.28 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=102.0
Q ss_pred hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795 87 ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG 164 (285)
Q Consensus 87 ~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig 164 (285)
+.+.+|. .+.++.+..+.++..+++++.|+++||+|||+++..+.++..++.+.+.+ .++++.+++..++.|++
T Consensus 46 i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~ 121 (496)
T PRK03893 46 VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF----APGYWTLFIARLVIGMG 121 (496)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHH
Confidence 3455666 56889999999999999999999999999999999998887777665544 24677788889999999
Q ss_pred hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.+..++..++++.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 122 MAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998766 89999999999999999988877653
No 104
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.11 E-value=1.5e-08 Score=95.90 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=93.7
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
+.|.|+++ .|. .+.|+....+++++++++++.|+++||+|||+.+..+..+..++...+.. .+ ++. ... ...
T Consensus 227 ~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~-~~~--~~~ 300 (393)
T PRK09705 227 WLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW-LP-LQL-PVL--WAM 300 (393)
T ss_pred HHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-cc-chH-HHH--HHH
Confidence 34777766 576 46889999999999999999999999999999998887777666554432 33 122 222 234
Q ss_pred HHHHhhhhhhcccccceeeecc-ccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFR-RNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp-~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
+.|++.+...+..+....+.++ ++. +.+++..+...+++..++..+.+.+..++
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777767777774 333 88899999999999999998888876654
No 105
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.11 E-value=8.6e-09 Score=100.77 Aligned_cols=152 Identities=18% Similarity=0.256 Sum_probs=118.9
Q ss_pred hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCCh--hHHHHHHHHHHH-HHHHHHHhCC---CCCChHHHH
Q psy4795 84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRS--PLMALGFIVHCC-LIWILVVWRP---HPNNPKIFF 155 (285)
Q Consensus 84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk--~~i~~g~~l~~i-~~~~l~~~~p---~~~~~~~~~ 155 (285)
..|.++.+|++ +...+.++..+..++|+.++|++.||+|.| +++..+.++..+ +...++-..+ ..++.+.++
T Consensus 305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 67777788884 566788899999999999999999999999 888777766533 3333331111 124567888
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHHHHHHHH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM-----KLYVMGVVLVTGFCGY 229 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~-----~l~il~~~lv~~~v~~ 229 (285)
+...++|+..|..|+..-++++++.|+++ ++-|++|.+..-..+.+|+++-+.+...+ -+..++++++++.+..
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988 99999999999999999999887765443 3556666677777776
Q ss_pred HHHHHH
Q psy4795 230 VIVEVR 235 (285)
Q Consensus 230 ~~~e~~ 235 (285)
..++..
T Consensus 465 ~~v~~~ 470 (477)
T PF11700_consen 465 FFVDVE 470 (477)
T ss_pred hhccch
Confidence 655543
No 106
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.11 E-value=9.4e-10 Score=104.51 Aligned_cols=126 Identities=18% Similarity=0.031 Sum_probs=100.9
Q ss_pred hhhhhhc-cchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--hCCCCCChHHHHHHHHH
Q psy4795 84 GAYISCA-LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--WRPHPNNPKIFFTISGL 160 (285)
Q Consensus 84 ~~Y~~~~-lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~~p~~~~~~~~~~~~~l 160 (285)
|.|.++. ....+.|++...+.++..+++++.|+++||+|||+++..+.++..++...+.. ... .++++.+++..++
T Consensus 41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 119 (417)
T PRK10489 41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP-EPSLLAIYLLGLW 119 (417)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 4444432 22357899999999999999999999999999999998887776665543321 122 3456777778888
Q ss_pred HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.|++.+...++.++.+.+.+|+++ +.+.+.++...++|..+|..+++.+.
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 120 DGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 999999999999999999998766 89999999999999999999988764
No 107
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.11 E-value=2.3e-10 Score=90.08 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeee
Q psy4795 100 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTL 179 (285)
Q Consensus 100 ~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~ 179 (285)
+..++++..+++++.|++.||+|||+.+..+.....++.+.... .++.+...+..++.|++.+..++..++.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL----SSNITVLIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567889999999999999999999999888877766655433 24567777788999999999999999999999
Q ss_pred ccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 180 FRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 180 fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+|+++ +.+.+..+...++|..++..+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 98765 999999999999999999999887753
No 108
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.11 E-value=2.3e-08 Score=94.13 Aligned_cols=190 Identities=13% Similarity=0.007 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHH-HHhcccCCCC-----------------cch-HH-----
Q psy4795 22 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI-LVVWRPHPNN-----------------PKI-FF----- 77 (285)
Q Consensus 22 l~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~-fl~~e~~~~~-----------------p~l-~~----- 77 (285)
.....++..++....+.+.+++|++.+++...++..+..+. +...|+++++ |.. ..
T Consensus 139 ~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 218 (390)
T TIGR02718 139 IAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALAL 218 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHH
Confidence 34445666777777778889999986666555555443222 2232321110 100 00
Q ss_pred HH-------hhhhhhhhhhccch--hHHHHHHHHHHH-HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH-hC-
Q psy4795 78 TI-------SGLWGAYISCALGV--SSVGYVMICFGV-VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV-WR- 145 (285)
Q Consensus 78 ~~-------~~ft~~Y~~~~lg~--~~~G~v~~~~gv-~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~-~~- 145 (285)
.. ..+.+.|+.+ .|. +++|++....++ ...++.++.|++.||+|+|+.+..+..+..+....... ..
T Consensus 219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (390)
T TIGR02718 219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF 297 (390)
T ss_pred HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 1134667766 466 578888887775 55667889999999999999998877665333222221 11
Q ss_pred CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccc-cc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR-NK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~-~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
...++.+..+....+.+++.+..++..++...+..++ +. ++.++.++...++|..+|..+++.+..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 298 WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR 366 (390)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334444444555667777777777777777654 44 9999999999999999999999987654
No 109
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.10 E-value=3.1e-08 Score=93.84 Aligned_cols=192 Identities=17% Similarity=0.096 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhh-hCchHHHHHHHHHHHHH-HHHHHhcccCCCC--c-c------hHH---------
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCL-IWILVVWRPHPNN--P-K------IFF--------- 77 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~-~G~~~~~~~g~~~~~~~-l~~fl~~e~~~~~--p-~------l~~--------- 77 (285)
.|.....++++..+.+.+.+.+.++ .|++..++...++.++. +..+...||+..+ . . -.+
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGA 211 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCH
Confidence 3455566777888888877888776 48876665544444433 2222233332110 0 0 000
Q ss_pred ---HH-------h-----hhhhhhhhhccch--hHHHHHHHHHHH-HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHH
Q psy4795 78 ---TI-------S-----GLWGAYISCALGV--SSVGYVMICFGV-VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW 139 (285)
Q Consensus 78 ---~~-------~-----~ft~~Y~~~~lg~--~~~G~v~~~~gv-~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~ 139 (285)
.. . .+.+.|+.+.+|. ++.|+++...++ +.+++.+++|++.||+|||+.+..+..+..+..+
T Consensus 212 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l 291 (402)
T PRK11902 212 WALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL 291 (402)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 00 0 1123345565676 467777766554 6899999999999999999988777766555443
Q ss_pred HHHHhCCCCCChHHHHHHH----HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 140 ILVVWRPHPNNPKIFFTIS----GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 140 ~l~~~~p~~~~~~~~~~~~----~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.+......+++.+...... +..|++.+..++....++.+.+|.+ .++.+....++|..++..+++.+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~G~l~~~ 365 (402)
T PRK11902 292 GYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTSGYLVEA 365 (402)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221111123344444433 3445666666777777777777644 45556666677777665667666543
No 110
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.10 E-value=2.5e-09 Score=100.48 Aligned_cols=124 Identities=21% Similarity=0.223 Sum_probs=97.1
Q ss_pred hhhhhhhhhccchh-------HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795 81 GLWGAYISCALGVS-------SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKI 153 (285)
Q Consensus 81 ~ft~~Y~~~~lg~~-------~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~ 153 (285)
.+.|.|.++ +|.+ .+|.+..+..++..+++++.|+++||+|||+++..+.++..++.+.+.. .++++.
T Consensus 35 ~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~ 109 (408)
T PRK09874 35 PFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL----AQNIWQ 109 (408)
T ss_pred hhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH----HhhHHH
Confidence 345556544 4542 2588899999999999999999999999999999988877776654433 245677
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+++..++.|++.+. .+..++.+.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus 110 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 166 (408)
T PRK09874 110 FLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA 166 (408)
T ss_pred HHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888988664 4666778888887665 89999999999999999998888764
No 111
>TIGR00895 2A0115 benzoate transport.
Probab=99.09 E-value=4.9e-09 Score=97.15 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=92.3
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
|+.+..|. .+.++......++..++.++.|+++||+|||+......+...... .+... .++.+..++..++.|+
T Consensus 275 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~g~ 350 (398)
T TIGR00895 275 KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV-LVGST---LFSPTLLLLLGAIAGF 350 (398)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHH---hhCHHHHHHHHHHHHH
Confidence 44445565 568889999999999999999999999999955544433333322 22221 2345666677888999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+.+..++..++++.+.+|++. +.+.++++...++|..+|..+.+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 351 FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999998766 9999999999999999999887754
No 112
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.08 E-value=1e-08 Score=96.99 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=84.8
Q ss_pred ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--hCCCCC----ChHHHHHHHHHH
Q psy4795 90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--WRPHPN----NPKIFFTISGLW 161 (285)
Q Consensus 90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~~p~~~----~~~~~~~~~~l~ 161 (285)
..|. ...++.+....++.+++++++|+++||+|||+.+..+.++..++.+.+.. ....++ ..+.......+.
T Consensus 313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (481)
T TIGR00879 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF 392 (481)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence 3455 45678888999999999999999999999999999887776666554431 111111 022222222233
Q ss_pred HHh-hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 162 GVG-DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 162 Gig-~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+.+ ...+.+....++.+.+|++. +.+.+..+...++|..++..+.+.+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 393 IAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 23344556667789998765 999999999999999999988776644
No 113
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.08 E-value=1.8e-09 Score=98.58 Aligned_cols=185 Identities=23% Similarity=0.272 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHH--HHhcccCC--------CC------cchH-----
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI--LVVWRPHP--------NN------PKIF----- 76 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~--fl~~e~~~--------~~------p~l~----- 76 (285)
.|.......++..++..+.|.+.++.|++..++...++.++..+. ++..++++ ++ +...
T Consensus 123 ~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (352)
T PF07690_consen 123 FGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSL 202 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHH
T ss_pred cccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccc
Confidence 356667777888888888888888888875555545454444332 22221110 11 0000
Q ss_pred --------HHH------------hhhhhhhhhhccchh---HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHH
Q psy4795 77 --------FTI------------SGLWGAYISCALGVS---SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV 133 (285)
Q Consensus 77 --------~~~------------~~ft~~Y~~~~lg~~---~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l 133 (285)
... ..+.|.|+.+.+|.+ +.+....+.+++..+++++.|+++||+|+++........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (352)
T PF07690_consen 203 FKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILL 282 (352)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 000 123467766666654 577889999999999999999999999998887777666
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHH
Q psy4795 134 HCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY 203 (285)
Q Consensus 134 ~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~ 203 (285)
..+..+.+..... .++....+...++.|++.+..++..++++.+.+|+++ +.+.++++..+++|..+|+
T Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 283 LILGALGLLLLPF-SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCCSHH-HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5555544333222 3445666667888999999999999999999998766 9999999999999999874
No 114
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.07 E-value=2.9e-09 Score=98.59 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=92.9
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHH-HHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMAL-GFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~-g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
.+.|.|+++.+|. .++|+++..+.+...+.+++.|+++||+|||+.++. +.....++...... .++++.+++.
T Consensus 18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 93 (375)
T TIGR00899 18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW----NRNYFLLLVL 93 (375)
T ss_pred hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh----cchHHHHHHH
Confidence 3456778888887 579999999999999999999999999999887654 44444333333222 3456666666
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc-hhH--hHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAA--FSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~a--fs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.++.|.+.+...+...++..+..|+++ +.+ .+..+...++|.++|..+++.+..
T Consensus 94 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 150 (375)
T TIGR00899 94 GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL 150 (375)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence 777787777777777777777776544 333 567888889999999999887753
No 115
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.07 E-value=1.2e-08 Score=98.19 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh-hhcccc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV-WQTQVN 173 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~-~~~~~~ 173 (285)
..++..+..++.+.++++++|+++||+|||++++.+.++..++.+.+....+++...........+.+.+.+. +.+..+
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (479)
T PRK10077 307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 386 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhH
Confidence 3456777888999999999999999999999999999887777655433221111112223334444544443 446678
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+++.+.+|+++ +.+.++.+..+++|..++....+.+
T Consensus 387 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 387 VLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred HHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 89999998754 9999999999999999886655543
No 116
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.07 E-value=1.4e-09 Score=106.24 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=101.6
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
.+.+|. ++.+++...+.++..++.+++|+++||+|||+++..+.++..++.+.... .++.+.+++..++.|+|.
T Consensus 33 ~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~----a~~~~~li~~r~l~G~g~ 108 (495)
T PRK14995 33 SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAF----SPTASWLIATRALLAIGA 108 (495)
T ss_pred HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Confidence 345665 57889999999999999999999999999999999999888877766554 356788888899999999
Q ss_pred hhhhcccccceeeec-cc-cchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 166 AVWQTQVNGLYGTLF-RR-NKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 166 g~~~~~~~ali~~~f-p~-~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+...+...+.+.+.+ |+ +++.+++++....++|.++|..+++.+..
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 109 AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999888888887776 44 44899999999999999999999988754
No 117
>KOG2615|consensus
Probab=99.06 E-value=2.8e-10 Score=106.50 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
...|++...+++.+.+++++.|.+|||+|||+++..+++..++....... +.+...+.+..++.|+..|.. +.+-
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----S~~F~afv~aR~l~Gi~kgnl-~v~r 142 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----SRNFAAFVLARFLGGIFKGNL-SVIR 142 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhccCch-HHHH
Confidence 35789999999999999999999999999999999998877764433222 345534444488899988866 4578
Q ss_pred cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++++|.++++ ++.++|......++|..+|+.+++++..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999665 4999999999999999999999999877
No 118
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.06 E-value=2.4e-09 Score=100.76 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=97.2
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. .+.++++..+.++..+++++.|+++||+|||+++..+..+..++.+.... .++.+.+++..++.|++.+
T Consensus 36 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 111 (394)
T PRK11652 36 RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF----AHSLTVLIAASAIQGLGTG 111 (394)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhhh
Confidence 44555 57889999999999999999999999999999999998877776655444 2456777888889999988
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
...+..+.+..+.+|+++ +.+.+.++....+|..++..+++.+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 157 (394)
T PRK11652 112 VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT 157 (394)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877777778888887655 888888888888888888888777643
No 119
>KOG3097|consensus
Probab=99.06 E-value=1.4e-10 Score=106.34 Aligned_cols=81 Identities=53% Similarity=1.017 Sum_probs=76.6
Q ss_pred CcccccceeeecccchHHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHhh
Q psy4795 2 GDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 81 (285)
Q Consensus 2 ~~f~~~~~~c~~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~~~~ 81 (285)
+||||+||.|++|++.+|++|.++|+.+++.|.+.|.|.+..||.++...|+++|..++.....|||.|.++.++|....
T Consensus 296 ~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aa 375 (390)
T KOG3097|consen 296 ADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAA 375 (390)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999888887754
Q ss_pred h
Q psy4795 82 L 82 (285)
Q Consensus 82 f 82 (285)
.
T Consensus 376 l 376 (390)
T KOG3097|consen 376 L 376 (390)
T ss_pred h
Confidence 4
No 120
>PRK03699 putative transporter; Provisional
Probab=99.05 E-value=2.4e-09 Score=101.12 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=96.0
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|+ ++.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+ .++++.+++..++.|++.|
T Consensus 35 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~----~~~~~~~~~~~~l~G~~~g 110 (394)
T PRK03699 35 EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF----SHSLALFSIAMFVLGVVSG 110 (394)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----cchHHHHHHHHHHHHHhhH
Confidence 34565 57889999999999999999999999999999999988877776655444 2456777888899999999
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
...+..++.+.+.+|+++ +.+.+..+...++|..++....+.+
T Consensus 111 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 111 ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888999999998765 8888888888888887777766554
No 121
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.05 E-value=6.3e-10 Score=107.70 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=99.6
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH-hCCCCCChHHHHHHHHHHHHh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV-WRPHPNNPKIFFTISGLWGVG 164 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~-~~p~~~~~~~~~~~~~l~Gig 164 (285)
.+.+|. .+.|++...+.++..+++++.|+++||+|||+++..+.++..+..+.... .....++.+.+++..++.|++
T Consensus 56 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 135 (467)
T PRK09556 56 ISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFF 135 (467)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 345565 67999999999999999999999999999999998888776665543322 112235678888889999999
Q ss_pred hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
.+...+..++++.+.+|+++ +.+.+++....++|.+++..+...+
T Consensus 136 ~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 136 QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence 99999999999999998765 9999999999999999998876544
No 122
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.04 E-value=7.9e-10 Score=106.59 Aligned_cols=120 Identities=9% Similarity=0.028 Sum_probs=100.1
Q ss_pred cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhh
Q psy4795 91 LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVW 168 (285)
Q Consensus 91 lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~ 168 (285)
++. .+.|+++..+.++..+++++.|+++||+|||+++..+.++..+..+...... .++.+..++..++.|++.+..
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA--GGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHhcccc
Confidence 455 5788999999999999999999999999999999998887666654432211 234566778899999999999
Q ss_pred hcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 169 QTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 169 ~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.+....++.+.+|++ ++.+.+.+....++|..++..+++.+..+
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~ 193 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES 193 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999865 49999999999999999999998887543
No 123
>KOG0255|consensus
Probab=99.04 E-value=8.9e-09 Score=100.98 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
....+...++-+|..+|++++|.++||+|||++++.+.++..++-+...+ .++++.+.+..++.|++.+...+...
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~----a~~~~~~~~~Rfl~G~~~~~~~~~~~ 193 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF----APNYWMFLIFRFLSGFFGSGPLTVGF 193 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhccchhHHhH
Confidence 45778899999999999999999999999999999999998888766655 56889999999999999999999999
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVM 218 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il 218 (285)
.+++|.++++. +.+.+. ......|..++....+++..+|+..-.
T Consensus 194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~ 238 (521)
T KOG0255|consen 194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFW 238 (521)
T ss_pred hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999996554 777778 777777777788888888777774433
No 124
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.04 E-value=3.8e-09 Score=104.41 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH-HHhCCCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL-VVWRPHPNNPKIFFTISGLWGVGDAVWQTQV 172 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l-~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~ 172 (285)
..+|++..+..+-.++.++++|.++||++||++++.+.++.++....+ .+...+..++|.+++..++.|++.+..+|..
T Consensus 45 ~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~ 124 (524)
T PF05977_consen 45 LMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAW 124 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888999999999999999999999999988776544332 2222224567888999999999999999999
Q ss_pred ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++++.+++|+++ ..|.++++...|+...+|+++++.+-.
T Consensus 125 ~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 125 QAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred HHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999988 999999999999999999999988644
No 125
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.03 E-value=1.6e-09 Score=115.13 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNG 174 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~a 174 (285)
..+++..++.++..++++++|+++||+|||++++.+.++.++..+....... .++++.+++..++.|++.+.+.+..++
T Consensus 48 ~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-LGWFWLAFAVTFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHhhchHHHh
Confidence 4678888999999999999999999999999999888765554443222111 244788888899999999999999999
Q ss_pred ceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 175 LYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 175 li~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
++.+.+|+++ +.+++.+....++|..+|..+++.+...
T Consensus 127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998766 9999999999999999999999887654
No 126
>PRK09848 glucuronide transporter; Provisional
Probab=99.03 E-value=2.3e-08 Score=96.21 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=95.8
Q ss_pred hhhhhhccchh-HHH-HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGVS-SVG-YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~~-~~G-~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
|.|.+..+|.+ ..+ +.+....++.++++++.++++||+|+|+++.+|.++..++.+.+.+ .+ +++.+..++..++.
T Consensus 252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~-~~-~~~~~~~~~~~~l~ 329 (448)
T PRK09848 252 LFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW-VS-VWSLPVALVALAIA 329 (448)
T ss_pred eeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cC-chhHHHHHHHHHHH
Confidence 56677777773 334 4445556778889999999999999999999998877776655443 33 34556666667788
Q ss_pred HHhhhhhhcccccceeeecccc-------c-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRN-------K-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~-------~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|+|.+..++..+++..+..|.+ + +..++.+++.+.+|.++|.++.+.+
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643 3 7788999999999999998876654
No 127
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.03 E-value=5e-08 Score=103.83 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=101.5
Q ss_pred hhhhhhhccch--h-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 83 WGAYISCALGV--S-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 83 t~~Y~~~~lg~--~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
.|.|++..+|. . ..|++....+++.++++++.|+++||+++++++.++.++.+++.+.+.+ .++.+..++..+
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 330 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT----APSLASVLVLFF 330 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH----hhhHHHHHHHHH
Confidence 36777777776 4 6789999999999999999999999999999888887766665544433 225566677788
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
++|++.++..++.++++.+..|++. +.+++++++++++|+.++..++..+.
T Consensus 331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 99999999999999988877776654
No 128
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.02 E-value=2.7e-09 Score=100.89 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=96.5
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|. .+.++....+.++..+++++.|+++||+|||+++..+..+..++.+.... .++.+.+++..++.|++.+
T Consensus 41 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~ 116 (406)
T PRK15402 41 EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL----AQSIEQFTLLRFLQGIGLC 116 (406)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhHhh
Confidence 34555 56888899999999999999999999999999999998877776655444 2356777788899999999
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
...+..++.+.+.+|+++ ..+.+......++|..+|..+++.+.
T Consensus 117 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 117 FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999998876 67788877777888888888877653
No 129
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.02 E-value=5.9e-09 Score=101.83 Aligned_cols=124 Identities=16% Similarity=0.260 Sum_probs=90.7
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc----ccCChhHHHHH-HHHHHHHHHHHHHhCCCC--------
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK----FIGRSPLMALG-FIVHCCLIWILVVWRPHP-------- 148 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD----riGrk~~i~~g-~~l~~i~~~~l~~~~p~~-------- 148 (285)
+.|+ +.+|. ..++++..+.++...+.+|+.|+++| |+|||+.++++ .....+++.+ +.+.++.
T Consensus 28 ~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l-l~~~~~~~~~~~~~~ 105 (477)
T TIGR01301 28 TPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL-IGFAADIGHLFGDNL 105 (477)
T ss_pred HHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH-HHhCchhhhhccccc
Confidence 3344 34666 57889999999999999999999999 59999998875 4444443333 3232210
Q ss_pred ---CCh---HHHHHHHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 149 ---NNP---KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 149 ---~~~---~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+.. +...+...++.++....+++..++++|++|+++ +.+++..+.+.++|..+|+..+++.
T Consensus 106 ~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 106 DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 222333445567888899999999999998753 5799999999999999999998765
No 130
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.02 E-value=5.2e-09 Score=99.46 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=96.4
Q ss_pred Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCC-hhHHHHHHHHHHHHHHHHHHhCCCCC--
Q psy4795 79 ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGR-SPLMALGFIVHCCLIWILVVWRPHPN-- 149 (285)
Q Consensus 79 ~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGr-k~~i~~g~~l~~i~~~~l~~~~p~~~-- 149 (285)
...|.+.|+++.+|+ ..+|.++....+..++..|+.|+++|| +|| ||.++.+.....++.+.++ +.|+.+
T Consensus 18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~-~~~~~~~~ 96 (437)
T TIGR00792 18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF-TTPDFSAT 96 (437)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH-hCCCCCcc
Confidence 355677788888887 579999999999999999999999997 677 4456677777766655544 344222
Q ss_pred -ChHHHHHHHHHHHHhhhhhhcccccceeeecc--ccchhHhHHHHHHHHHHHHHHHHHhh
Q psy4795 150 -NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFR--RNKEAAFSNFRLWESVGFVIAYAYST 207 (285)
Q Consensus 150 -~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp--~~~~~afs~~~l~~~lG~~ig~~~s~ 207 (285)
..+..++...+++++.++.+.+.+++..++.+ ++|+...+..+.+.++|..++..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~ 157 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL 157 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445556678899999999999999999874 34577888888888898777655543
No 131
>PTZ00207 hypothetical protein; Provisional
Probab=99.01 E-value=1.4e-08 Score=101.51 Aligned_cols=133 Identities=13% Similarity=0.230 Sum_probs=98.8
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC--CCChHHHH
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH--PNNPKIFF 155 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~--~~~~~~~~ 155 (285)
+.+.+. +++.+|+ .+.+++... +....++++++|+++||+|||+++.++.++..++.++..+.... .++++.++
T Consensus 47 sv~s~~-L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 47 NLISGA-MQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHH-HHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 344442 3556676 356655544 33445567778999999999999999999988888765543111 24678888
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHH-HHHHhhhhhHHHH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVI-AYAYSTHLCARMK 214 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~i-g~~~s~~l~~~~~ 214 (285)
+..++.|+|.+..++.....+.+.||++|+.+.++.+...++|.++ +..+..++..++.
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~ 184 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTS 184 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888999999999998888999999999999999999999999985 4444555433343
No 132
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.01 E-value=9.9e-09 Score=94.81 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=81.6
Q ss_pred HHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHHhhhhhhcccccceeee
Q psy4795 105 VVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN-----PKIFFTISGLWGVGDAVWQTQVNGLYGTL 179 (285)
Q Consensus 105 v~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~-----~~~~~~~~~l~Gig~g~~~~~~~ali~~~ 179 (285)
+...+++++.|+++||+|||+++..+.++..++.+...+. ++.+. .+.+++..++.|++.+...+..++++.+.
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~ 124 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL-PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY 124 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC-CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence 3445789999999999999999999998887776555442 21111 12456678899999999999999999999
Q ss_pred ccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 180 FRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 180 fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+|+++ +...+......++|..++...+..+
T Consensus 125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 125 APPGKRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97655 8899999999999999888776554
No 133
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.01 E-value=4.5e-09 Score=99.29 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=91.0
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
++.+|+ .+.|++...+.++..++++..|+++||+|||+++..+......+.. ... . .++++.+.+..++.|++.
T Consensus 18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~-~--~~~~~~l~~~R~l~G~g~ 93 (368)
T TIGR00903 18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL-D--PFNYEWLLACQLLAALGQ 93 (368)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-H--hccHHHHHHHHHHHHhHh
Confidence 345565 5789999999999999999999999999999876655444333322 222 1 236788888899999999
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+.. .+....+.+.+|+++ +.+.++.....++|..++...++.+.
T Consensus 94 ~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 94 PFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred HHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 444555578887655 99999999999999999999988874
No 134
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.00 E-value=2.1e-08 Score=98.25 Aligned_cols=113 Identities=9% Similarity=0.057 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCChhH-------HHHHHHHHHHHHHHH-----HHhCCC-CCChHHHHHHHHHHHH
Q psy4795 97 GYVMICFGVVNAICSLLFGTLMKFIGRSPL-------MALGFIVHCCLIWIL-----VVWRPH-PNNPKIFFTISGLWGV 163 (285)
Q Consensus 97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~-------i~~g~~l~~i~~~~l-----~~~~p~-~~~~~~~~~~~~l~Gi 163 (285)
.......++..++.+|+.|++.||.+||+. +.+|.++..+++..+ .....+ ..++++.....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 455666778888999999999999999973 777877777665432 121111 2346667778899999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|.++..++.++++.+..|++. +.+.+++++.+++|..+|..++...
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887 9999999999999999999888543
No 135
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.98 E-value=1.5e-08 Score=98.72 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=92.4
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
++++.+|+ .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+ .++++.+++..++.|+
T Consensus 61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~ 136 (476)
T PLN00028 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL----VSSATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence 34556676 57888888899999999999999999999999999888777766654433 2355667777888898
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+.+.+. +....+.+.+|+++ +.+.++.+.+.++|..++..+.+.+
T Consensus 137 ~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 137 SLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887654 34556788898754 9999999999999998887666543
No 136
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.97 E-value=1.2e-08 Score=97.70 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCC-----ChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 99 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPN-----NPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 99 v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~-----~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
+.....++..++++++|+++||+|||+++..+.++..++.+...+. |+-. ++..+.+..++.|++.|...+...
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~ 146 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSA 146 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence 3344445666999999999999999999999998887777654442 2111 134567788999999999999999
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+++.|.+|+++ +.+.+..+...+.|..++......+
T Consensus 147 ~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 147 TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998665 8888888888999988887665443
No 137
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.97 E-value=1.4e-08 Score=99.07 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChH--------HHHHHHHHHHHhhhhhhccc
Q psy4795 101 ICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPK--------IFFTISGLWGVGDAVWQTQV 172 (285)
Q Consensus 101 ~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~--------~~~~~~~l~Gig~g~~~~~~ 172 (285)
...-++..++++++|+++||+|||+++.++.++..++.+...+ .| ++. ++.+..++.|++.|...+..
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~-~~---~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~ 139 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL-IP---SYATIGIWAPILLLLCKMAQGFSVGGEYTGA 139 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHH
Confidence 4556788999999999999999999999999988887766544 22 332 36777899999999999999
Q ss_pred ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
.+++.|.+|+++ +.+.+......++|..+|..+...
T Consensus 140 ~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 140 SIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998665 888888888888888888766543
No 138
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.97 E-value=9.2e-09 Score=109.81 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHH--HHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHC--CLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQ 171 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~--i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~ 171 (285)
...++.+.++.+..++.++++|+++||+|||+++........ ......... .++++.+++..++.|++.+.+.+.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---LNSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhchH
Confidence 356788889999999999999999999999998643222111 111112222 246788899999999999999999
Q ss_pred cccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 172 VNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 172 ~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.++++.+.+|+++ +.+.|+.+...++|.++|..+++.+..
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998876 999999999999999999999998754
No 139
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.96 E-value=5.2e-08 Score=93.52 Aligned_cols=148 Identities=14% Similarity=-0.015 Sum_probs=87.4
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHH--HHHHHhCCCCCChHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLI--WILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~--~~l~~~~p~~~~~~~~~~~ 157 (285)
|.|.|+++..|. ...++.+..+++++.++.+++|+++||+++++....+........ ...+...+ ..+.+.....
T Consensus 273 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 351 (438)
T TIGR00712 273 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP-AGNPLVDMIC 351 (438)
T ss_pred hHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHH
Confidence 457888877776 467888899999999999999999999965443333332222211 11222222 2233433333
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHH-HHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVG-FVIAYAYSTHLCAR----MKLYVMGVVLVTGFCGYV 230 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG-~~ig~~~s~~l~~~----~~l~il~~~lv~~~v~~~ 230 (285)
.+.+|++.............+.+|++. +++.++++...++| .++|..+.+.+..+ .-.+++.+..+++.+...
T Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430 (438)
T ss_pred HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 344444322111222345668888755 99999999988886 56787777666542 334444444444444433
No 140
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.96 E-value=3.3e-09 Score=102.66 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=92.9
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH-HHHHHHhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI-SGLWGVGD 165 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~-~~l~Gig~ 165 (285)
+.+|. ++.+++...+.++..+++++.|+++||+|||++++.+.++..+..+...+ .++.+..++. .++.|++.
T Consensus 47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~l~G~~~ 122 (455)
T TIGR00892 47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF----SSNVIELYLTAGFITGLGL 122 (455)
T ss_pred HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhcc
Confidence 45665 57888888888899999999999999999999999988777766655433 2344554433 46779988
Q ss_pred hhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 166 AVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+...++..+++.+.+|++++.+.++.+...++|.+++..+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 123 AFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 876667778888889887899999999999999998888776653
No 141
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.96 E-value=2.4e-07 Score=88.49 Aligned_cols=191 Identities=12% Similarity=0.020 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHH-HHHH-hcccCC--CCc------chHHH--H-------
Q psy4795 19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLI-WILV-VWRPHP--NNP------KIFFT--I------- 79 (285)
Q Consensus 19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l-~~fl-~~e~~~--~~p------~l~~~--~------- 79 (285)
|.......++..++.+..+.+.++.|++..++.-.++.++.+ ..+. ..|+++ +++ .-.+. .
T Consensus 143 ~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 222 (413)
T PRK15403 143 AIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLT 222 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHH
Confidence 344455556666666666777778898755554444444332 2222 222111 111 00000 0
Q ss_pred ---------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH
Q psy4795 80 ---------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV 142 (285)
Q Consensus 80 ---------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~ 142 (285)
..+.|.|+++..|. .+.|+.......+..+++.+.+++.+|.++++....+..+..++...+.
T Consensus 223 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~ 302 (413)
T PRK15403 223 GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLI 302 (413)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence 01247888887776 4678888888888888888888876554444443333222222222211
Q ss_pred H---hCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 143 V---WRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 143 ~---~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
. ..+ ++++..++..++.++|.+...+..++......+.+++++.+++++.+..++..+....+++..
T Consensus 303 ~~~~~~~--~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~ 372 (413)
T PRK15403 303 VGNLLWP--HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF 372 (413)
T ss_pred HHHHHcc--ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122 333344566777888888888777753322223345899999999999999999888887644
No 142
>PRK09669 putative symporter YagG; Provisional
Probab=98.95 E-value=1.4e-07 Score=90.75 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=91.4
Q ss_pred hhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 84 GAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 84 ~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
+.|.+..++.. ..+..+....+..+++.++.++++||+|+|+.+..+.+...+....+++. + +++.+.+++..+++|
T Consensus 253 ~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~g 330 (444)
T PRK09669 253 LYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-P-PSNVWLIFALNILFN 330 (444)
T ss_pred heeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-C-cchHHHHHHHHHHHH
Confidence 33344445543 34456666667888889999999999999999988876655443333332 2 345667777788999
Q ss_pred Hhhhhhhcccccceeeeccc-------cc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 163 VGDAVWQTQVNGLYGTLFRR-------NK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~-------~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
++.+..++..+++++|..+. ++ +..+|.+.+.+++|.++|..+++.+
T Consensus 331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998751 22 5678899999999999998887664
No 143
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.95 E-value=7.3e-09 Score=98.60 Aligned_cols=131 Identities=12% Similarity=0.162 Sum_probs=82.4
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--CCC-CCChH-H
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--RPH-PNNPK-I 153 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--~p~-~~~~~-~ 153 (285)
..+.|.|+++.+|. .++|++...+.++..+++++.|+++||+|||+++..+.....+.....+.. .+. ..+.. .
T Consensus 30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (420)
T PRK09528 30 FSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLG 109 (420)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887777 579999999999999999999999999999999887665544333221110 000 00001 1
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.++..+..|.+.....+..+... +.++++++..++..+.+.++|.+++..+++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 166 (420)
T PRK09528 110 AIVGGIYLGFGFLAGAGAIEAYI-ERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN 166 (420)
T ss_pred HHHHHHHhhhhhccchhhhhhHH-HHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence 11112222322222222222222 2233444667888999999999999999888744
No 144
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.95 E-value=3.3e-08 Score=93.86 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=106.3
Q ss_pred hhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 82 LWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 82 ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
+.|.|+++..|.+ .+++....+-++...|+++.|++|||+ |||.++.+...+.....+..++..| +.++++..++
T Consensus 274 W~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~-~~~~~l~~~~ 352 (448)
T COG2271 274 WGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP-NGSYLLDAIL 352 (448)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC-CccHHHHHHH
Confidence 3499999998884 677999999999999999999999983 6776665544433333334444455 3466777777
Q ss_pred HHHHHHhhhhhhcc--cccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHH
Q psy4795 158 SGLWGVGDAVWQTQ--VNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA----RMKLYVMGVVLVTGFCGY 229 (285)
Q Consensus 158 ~~l~Gig~g~~~~~--~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~----~~~l~il~~~lv~~~v~~ 229 (285)
.+..|+. ++.|| +.....|..|++- ++|-+...++..+ |.+.+-..-+.+.. +.-.+++.+..+++.+.+
T Consensus 353 l~~iGf~--IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 353 LFIIGFL--IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHH--HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 7776654 34444 3445567788887 8888888888888 77766555444422 233566666667777777
Q ss_pred HHHHHHHHHhHH
Q psy4795 230 VIVEVRHMMKAR 241 (285)
Q Consensus 230 ~~~e~~~~~~~~ 241 (285)
..+-+.++++.|
T Consensus 431 ~~~~~~~~~~~~ 442 (448)
T COG2271 431 LPVWNAEERKIR 442 (448)
T ss_pred HHHHhhcchhhh
Confidence 666655544443
No 145
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.93 E-value=4.3e-08 Score=94.54 Aligned_cols=127 Identities=17% Similarity=-0.002 Sum_probs=80.0
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHH--------HHHHHHHHHHHHHHHHhCCCCCCh
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLM--------ALGFIVHCCLIWILVVWRPHPNNP 151 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i--------~~g~~l~~i~~~~l~~~~p~~~~~ 151 (285)
|.|.|+++.+|. .+.|+......++..++++++|+++||+++|+.. ..+......+...+..... .++.
T Consensus 283 ~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 361 (465)
T TIGR00894 283 YLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL-SAAF 361 (465)
T ss_pred HHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCch
Confidence 458888887777 5788888899999999999999999997654321 1111111111111111111 2233
Q ss_pred HHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+...+...+.+.+.+...+.......+..|+..+.+.++.++..++|..++..+.+.+
T Consensus 362 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~ 419 (465)
T TIGR00894 362 YLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNI 419 (465)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 4444444444555444444444555566777669999999999999998888776664
No 146
>KOG0254|consensus
Probab=98.92 E-value=1.5e-08 Score=99.62 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
++.+++.....++..+++++.|+++|++|||+.++++.++..++.+.... .++.+.+.+..++.|+|.|..+...+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~----a~~~~~l~~GR~l~G~g~G~~~~~~p 164 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL----APSWYQLIVGRILTGLGVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhccchhhhhhcch
Confidence 45689999999999999999999999999999999999999998877766 34788999999999999999999999
Q ss_pred cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.+++|.-|++ |+...+.+++..++|..+++..+....
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~ 202 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS 202 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999885 599999999999999999988887764
No 147
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.91 E-value=2.8e-08 Score=96.64 Aligned_cols=118 Identities=12% Similarity=0.076 Sum_probs=95.5
Q ss_pred ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHHHHHHhhh
Q psy4795 90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~-~p~~~~~~~~~~~~~l~Gig~g 166 (285)
.+|+ ++.++...+..++..++.+..|++.||+|.|+++..+.++..+..+.+.+. ....++++.+++..+++|++ +
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 4666 578899999999999998889999999999999999988877666554442 11135788889999999998 5
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
...+.....+...||+++ +.+.+++.-+.|+|..++..+.+.
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566778888999999875 999999988888888877666654
No 148
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.2e-08 Score=96.76 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=102.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhc
Q psy4795 91 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 91 lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~ 170 (285)
+..++.|++..++.+...++-.+.|.++||.+.|..+.+|+++.++.-+++-+ .++.+++.+..++.|...|.--|
T Consensus 61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gf----s~s~~~~~~l~~lng~fQg~Gwp 136 (448)
T COG2271 61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF----SPSLFLFAVLWVLNGWFQGMGWP 136 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhcCCCc
Confidence 45579999999999999999999999999999999999999998887766544 34778888889999999999999
Q ss_pred ccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHh--hhhhH
Q psy4795 171 QVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYS--THLCA 211 (285)
Q Consensus 171 ~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s--~~l~~ 211 (285)
++...+..-||++ ||+..|+.|..+|+|.++...+. ..+..
T Consensus 137 p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999875 59999999999999998888777 45443
No 149
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.89 E-value=1.6e-08 Score=103.64 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccc
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGL 175 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~al 175 (285)
+....++.+++.+++.+++|+++||+|||+++.++.++.+++.+.+.+ .+ +....++..++.|++.+...+..+++
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~-~~---s~~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF-GN---SESAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-Hc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999998887777655443 22 23344444566777666677788899
Q ss_pred eeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 176 YGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 176 i~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+++++|++. +.++++.+.+.++|.++|..+++.+..
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 999999999999999999999876544
No 150
>PRK10054 putative transporter; Provisional
Probab=98.89 E-value=1.4e-07 Score=89.57 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNG 174 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~a 174 (285)
..|.+....++......+..|++.||.++|+.+..+..+..+....+... .++.+...+...+.|+|.+...+..++
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~p~~~~ 321 (395)
T PRK10054 245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS---GNSLLLWGMSAAVFTVGEIIYAPGEYM 321 (395)
T ss_pred HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc---chHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56777888888888888889999999999999988887777666544332 234555566778899999888888888
Q ss_pred ceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q psy4795 175 LYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLY-VMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 175 li~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~-il~~~lv~~~v~~~~~e 233 (285)
.+.+..|++. ++.++.++ ..++|.++|...++.+..+.-.. ...++.+...+.+..+-
T Consensus 322 ~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 322 LIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 8888888776 88888765 56689999999998887665433 22333344444444444
No 151
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.89 E-value=6.5e-08 Score=89.63 Aligned_cols=124 Identities=13% Similarity=0.229 Sum_probs=91.7
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-----CChhHH-HHHHHHHHHHHHHHHHhCCCCCChHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-----GRSPLM-ALGFIVHCCLIWILVVWRPHPNNPKIFF 155 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~~i-~~g~~l~~i~~~~l~~~~p~~~~~~~~~ 155 (285)
|.+.+ ..|+ +++|+.... ++...+ .++.|.++||+ ||||.+ +.+.++..++...+.+..+ ..+.+.++
T Consensus 12 ~~~~~-~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-~~~l~~l~ 87 (356)
T TIGR00901 12 PYWLR-SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-STDLPLLA 87 (356)
T ss_pred HHHHH-HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-chhHHHHH
Confidence 44444 4465 578876544 444454 88999999997 898874 5666666665555544443 45566677
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
...++.+++.+...++..+++.+.+|+++ +.+.+......++|..++..++..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77778889999999999999999997655 899999999999999999888876643
No 152
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.88 E-value=2.2e-08 Score=94.20 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=91.1
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCCh----hHHHHHHHHHHHHHHHHHHhCCCCCChHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRS----PLMALGFIVHCCLIWILVVWRPHPNNPKIFF 155 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk----~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~ 155 (285)
|.|.|+++ +|. .++|+++.++.+...+++++.|+++||+||+ +.+.++.... . ..+. .. .++.|.++
T Consensus 26 ~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~-~~~~-~~-~~~~~~l~ 98 (382)
T PRK11128 26 FWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---A-VAFW-FG-AHSFWLLF 98 (382)
T ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---H-HHHH-Hh-cccHHHHH
Confidence 44677765 465 6899999999999999999999999999994 2222221111 1 1111 11 35678888
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+..++.|++.+...+...++..+ .+++++.+++..+.+.++|.++|..+++.+..
T Consensus 99 i~~~l~g~~~~~~~~~~~a~~~~-~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 99 VAIGLFNLFFSPLVPLTDALANT-WQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred HHHHHHHHHHcccccHHHHHHHH-HHhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899988888877776655 45566889999999999999999999998754
No 153
>PRK11462 putative transporter; Provisional
Probab=98.86 E-value=1.6e-06 Score=84.32 Aligned_cols=123 Identities=13% Similarity=0.099 Sum_probs=84.7
Q ss_pred hhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 84 GAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 84 ~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
..|.+..+|.. ..+.++.+++++.+++.+++++++||+|+|+++..+..+..+..+.++ ..| +++.+..++..+++|
T Consensus 252 ~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~g 329 (460)
T PRK11462 252 MYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMF-FVP-MQASITMFVFIFVIG 329 (460)
T ss_pred hhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-Hhc-hhHHHHHHHHHHHHH
Confidence 34444445553 345677888899999999999999999999987765554433333322 233 233334455567788
Q ss_pred Hhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 163 VGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
++.+..++...+++.|..+ +++ +..++.+.+.+.+|.++|.++++.
T Consensus 330 ~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 330 VLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777788887755 334 566788889999999999877655
No 154
>PRK09952 shikimate transporter; Provisional
Probab=98.85 E-value=3.1e-08 Score=95.28 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHHhhhhhhcccccceee
Q psy4795 104 GVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN-----PKIFFTISGLWGVGDAVWQTQVNGLYGT 178 (285)
Q Consensus 104 gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~-----~~~~~~~~~l~Gig~g~~~~~~~ali~~ 178 (285)
-++..+++++.|+++||+|||+++..+.++..++.+...+ .|+-.. ++.+++..++.|++.|...+....++.|
T Consensus 74 ~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e 152 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGL-LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE 152 (438)
T ss_pred HHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 3667889999999999999999999998888877665544 221111 1246677899999999999888999999
Q ss_pred eccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 179 LFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 179 ~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
.+|+++ +...+......++|..++..+...
T Consensus 153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~ 183 (438)
T PRK09952 153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL 183 (438)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998766 777788888888888887655443
No 155
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.85 E-value=5.7e-07 Score=86.03 Aligned_cols=125 Identities=20% Similarity=0.290 Sum_probs=105.7
Q ss_pred hhhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 83 WGAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 83 t~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
.+.|.+..+|.+ ..+..+....+...++.++.++++||+|+|+.+..+.++..++...+.+..+ ++.+.+++...+.
T Consensus 248 ~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~ 325 (428)
T PF13347_consen 248 LPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--GSPWLVLILFILA 325 (428)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHh
Confidence 367777778874 6778888899999999999999999999999999999998887776655432 5678888989999
Q ss_pred HHhhhhhhcccccceeeeccc-------cc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRR-------NK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~-------~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|++.+..+...+++++|..+. ++ +..+|.+.+.+.+|..++..+.+.+
T Consensus 326 gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 326 GIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999998762 33 7888899999999999998876653
No 156
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.84 E-value=4.5e-07 Score=84.08 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=89.9
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
|.|.|+++ .|. .+.|......+++.++++++.|+++||+ +||+.+..+..+..++...+.+ .++ ++. . ...
T Consensus 219 ~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~--~~~ 292 (355)
T TIGR00896 219 WLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF-APM-HGL-W--AWA 292 (355)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH-hhh-hHH-H--HHH
Confidence 34777765 465 5788999999999999999999999999 5666666776666666554433 331 221 1 135
Q ss_pred HHHHHhhhhhhcccccceeeecc-ccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFR-RNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp-~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
.++|++.+...+...+.+.+..+ +++ +.+.+..+...++|..++..+.+.+..+.
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899988888777776665554 344 77777877788888888988888776543
No 157
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.84 E-value=6.7e-08 Score=91.52 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=96.8
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-----CChh-HHHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-----GRSP-LMALGFIVHCCLIWILVVWRPHPNNPKI 153 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~-~i~~g~~l~~i~~~~l~~~~p~~~~~~~ 153 (285)
-.|.|+++. |+ +++|++...... .+..++.|+++||+ |||| .+..+.+...++...+.+..+ .++.+.
T Consensus 21 ~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~-~~~~~~ 96 (402)
T PRK11902 21 TLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP-HAALWP 96 (402)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc-cchHHH
Confidence 347777753 65 689977665554 58899999999999 8876 677777777666665554433 455677
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+++..++.++..+...++..+++.+.+|+++ +.+.++.....++|..++..++..+..
T Consensus 97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD 155 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 7777778889999999999999999998874 889999888889999888887766544
No 158
>PRK09669 putative symporter YagG; Provisional
Probab=98.82 E-value=5.3e-08 Score=93.60 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=94.4
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCC-hhHHHHHHHHHHHHHHHHHHhCCCCC---
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGR-SPLMALGFIVHCCLIWILVVWRPHPN--- 149 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGr-k~~i~~g~~l~~i~~~~l~~~~p~~~--- 149 (285)
..|.+.|+++.+|+ ..+|.++.+.-+..++..|+.|+++|| +|| ||.++.+.+...++...+ ++.|+.+
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~-f~~p~~~~~~ 107 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT-FYTPDFGATG 107 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH-HhCCCCCcch
Confidence 56778888899998 579999999999999999999999998 777 455667777766665443 4455321
Q ss_pred ChHHHHHHHHHHHHhhhhhhcccccceeeecc--ccchhHhHHHHHHHHHHHHHHHHHh
Q psy4795 150 NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFR--RNKEAAFSNFRLWESVGFVIAYAYS 206 (285)
Q Consensus 150 ~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp--~~~~~afs~~~l~~~lG~~ig~~~s 206 (285)
..+.+++...+++.+.++++.+.+++.+++.+ ++|....+......++|..++..+.
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~ 166 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA 166 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455555677788888999999999999875 3445566777777888877776543
No 159
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.82 E-value=5.4e-08 Score=94.57 Aligned_cols=126 Identities=17% Similarity=0.269 Sum_probs=94.0
Q ss_pred Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc----ccCC-hhHHHHHHHHHHHHHHHHHHhCCCCCC-
Q psy4795 79 ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK----FIGR-SPLMALGFIVHCCLIWILVVWRPHPNN- 150 (285)
Q Consensus 79 ~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD----riGr-k~~i~~g~~l~~i~~~~l~~~~p~~~~- 150 (285)
...|.+.|+++.+|+ ..+|.++++..+..++..|+.|+++| |+|| ||.++.+.+...+++..+ ++.|+.++
T Consensus 25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll-f~~p~~~~~ 103 (473)
T PRK10429 25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL-FSAHLFEGT 103 (473)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH-HcCCCCCcc
Confidence 356778888998888 57999999999999999999999999 5699 666777877777665444 33442221
Q ss_pred --hHHHHHHHHHHHHhhhhhhcccccceeeecc--ccchhHhHHHHHHHHHHHHHHHHH
Q psy4795 151 --PKIFFTISGLWGVGDAVWQTQVNGLYGTLFR--RNKEAAFSNFRLWESVGFVIAYAY 205 (285)
Q Consensus 151 --~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp--~~~~~afs~~~l~~~lG~~ig~~~ 205 (285)
.+.+++...+++++..+++.+.+++..++.+ ++|...++..+.+.++|..++..+
T Consensus 104 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 104 AQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555667889999999999999999874 445666777688888875555443
No 160
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.82 E-value=5.1e-07 Score=85.15 Aligned_cols=125 Identities=9% Similarity=0.086 Sum_probs=92.9
Q ss_pred hhhhhhcc---c--hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 84 GAYISCAL---G--VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 84 ~~Y~~~~l---g--~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
+.|.+..+ + ....|+......+.+.++.+..|++.||+|||+.+.++.++..+....... .++++..+...
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~----~~~~~~~~~~~ 314 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF----ATTALEVVILK 314 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh----cCChHHHHHHH
Confidence 56665544 2 246788888889999999999999999999999998888776665544332 23456666777
Q ss_pred HHHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.+.|++....+.....+..+.+|++. +++.+. ++..+++|..++..+++.+...
T Consensus 315 ~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~ 370 (396)
T TIGR00882 315 MLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS 370 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 88888877766655566666676665 666665 7889999999999888887553
No 161
>TIGR00898 2A0119 cation transport protein.
Probab=98.82 E-value=4.7e-07 Score=88.05 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccccee
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYG 177 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~ 177 (285)
......+++++.+.++.++++||+|||+++.++.++..++.+.+.. .++ .+.+......++.+++.+...+..+.+..
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF-VPV-DLYFLRTALAVLGKFGITSAFQMVYLYTA 436 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-cCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677888899999999999999999999988877776655443 332 22244444455666666667777888999
Q ss_pred eeccccc-hhHhHHHHHHHHHHHHHHHHHhh
Q psy4795 178 TLFRRNK-EAAFSNFRLWESVGFVIAYAYST 207 (285)
Q Consensus 178 ~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~ 207 (285)
|.+|++. +.+.+..+....+|..++..+.+
T Consensus 437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 9999875 89999999999999999988876
No 162
>KOG0569|consensus
Probab=98.81 E-value=3.4e-08 Score=96.29 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccce
Q psy4795 97 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLY 176 (285)
Q Consensus 97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali 176 (285)
..+..++.+|.++|+++.|.++||+|||..+.+..++..++.++...... .++..++.+..++.|+..|+.....+-++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-APSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36778899999999999999999999999988888877776665444433 45678889999999999999999999999
Q ss_pred eeeccccc-hhHhHHHHHHHHHHHHHHHHHh
Q psy4795 177 GTLFRRNK-EAAFSNFRLWESVGFVIAYAYS 206 (285)
Q Consensus 177 ~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s 206 (285)
.|.-|++. |...+...+.-++|..+|..++
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 99999876 8888899999999999986664
No 163
>KOG3764|consensus
Probab=98.81 E-value=7e-09 Score=97.73 Aligned_cols=136 Identities=20% Similarity=0.329 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
.++|++..+..+.+.+.+|+.|.+.||+|+|..+++|++++....+++-+ .++++..+++..+.|+|+++..+.-.
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf----g~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF----GNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH----cchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 57999999999999999999999999999999999999998888776655 56788999999999999999999999
Q ss_pred cceeeeccccc--hhHhHHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHH-HHHHHHHHH
Q psy4795 174 GLYGTLFRRNK--EAAFSNFRLWESVGFVIAYAYSTHLCARM----KLYVMGVVLVT-GFCGYVIVE 233 (285)
Q Consensus 174 ali~~~fp~~~--~~afs~~~l~~~lG~~ig~~~s~~l~~~~----~l~il~~~lv~-~~v~~~~~e 233 (285)
+++++.||+|. +.+.++---+.++|..+|+-+++.++... -..++.+++++ +..-++.+|
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 99999999876 78888888888999999999999987643 24444444433 344444444
No 164
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.1e-07 Score=88.52 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=115.3
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
.+.+|+ ..+|+.+..|+.+..+++|+...+.||+.||++++..+.+..++-+...+ .+|+++..+..++.|+..
T Consensus 40 A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al----Ap~f~~Ll~aR~~~g~a~ 115 (394)
T COG2814 40 AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL----APSFAVLLLARALAGLAH 115 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHH
Confidence 355777 57999999999999999999999999999999999988887777766555 568899999999999999
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM-KLYVMGVVLVTGFCGYVIVEVRHM 237 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~-~l~il~~~lv~~~v~~~~~e~~~~ 237 (285)
|.+.+...++..++.|+|+ ++|.++-..-..++.++|.-+++++...+ .=....++..++.++..+.-....
T Consensus 116 G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999877 99988887777777777766666655432 112233444455555555555544
No 165
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.79 E-value=1.9e-07 Score=91.04 Aligned_cols=188 Identities=12% Similarity=-0.013 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcccC----CC--Cc---------------c--------
Q psy4795 25 FGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPH----PN--NP---------------K-------- 74 (285)
Q Consensus 25 ~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e~~----~~--~p---------------~-------- 74 (285)
.+++..+++.+.|.+.+++|++..++...++.++. +..+...|++ |+ +. .
T Consensus 167 ~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (468)
T TIGR00788 167 SATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLR 246 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 44788888888899999999976665544444443 3334444543 21 10 0
Q ss_pred -------h----HHHHhhhh-------hh--hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHH
Q psy4795 75 -------I----FFTISGLW-------GA--YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFI 132 (285)
Q Consensus 75 -------l----~~~~~~ft-------~~--Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~ 132 (285)
+ .|....|. .. +.++.+|. +.+|.+....+++++++..+.+++.+|++.|+++.++.+
T Consensus 247 ~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~ 326 (468)
T TIGR00788 247 GAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTL 326 (468)
T ss_pred HHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 0 00000000 11 22334665 579999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH----HhCCC--CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795 133 VHCCLIWILV----VWRPH--PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY 205 (285)
Q Consensus 133 l~~i~~~~l~----~~~p~--~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~ 205 (285)
+..++..... .|... -++.+.+....++-+++.++...+...++++..|++. ++.++++...+|+|..++..+
T Consensus 327 l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~ 406 (468)
T TIGR00788 327 LYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL 406 (468)
T ss_pred HHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence 8877664322 12111 0233455566778889999999999999999999877 999999999999999999998
Q ss_pred hhhhhHH
Q psy4795 206 STHLCAR 212 (285)
Q Consensus 206 s~~l~~~ 212 (285)
++.+..+
T Consensus 407 gg~l~~~ 413 (468)
T TIGR00788 407 GVLLMET 413 (468)
T ss_pred HHHHHHH
Confidence 8887554
No 166
>PRK15075 citrate-proton symporter; Provisional
Probab=98.79 E-value=1.1e-07 Score=91.07 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=79.9
Q ss_pred HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChH--------HHHHHHHHHHHhhhhhhccccccee
Q psy4795 106 VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPK--------IFFTISGLWGVGDAVWQTQVNGLYG 177 (285)
Q Consensus 106 ~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~--------~~~~~~~l~Gig~g~~~~~~~ali~ 177 (285)
...+++++.|+++||+|||++++.+.++..++.....+ .+ +++ .+++..++.|++.+...+....++.
T Consensus 68 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~-~~---~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 143 (434)
T PRK15075 68 MRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAF-VP---GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLA 143 (434)
T ss_pred HhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh-CC---cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 33578899999999999999999999887776655444 22 222 3466788999999998888889999
Q ss_pred eeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 178 TLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 178 ~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|.+|+++ +.+.+.+....++|..++..++..+
T Consensus 144 e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 144 EIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred hhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998765 9999999998888888877776654
No 167
>KOG2504|consensus
Probab=98.79 E-value=7.7e-08 Score=94.83 Aligned_cols=146 Identities=16% Similarity=0.275 Sum_probs=114.9
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhH--HHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPL--MALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~--i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
|.|.. ..|. .+..+++.+.++.+.++-++.|.++|+...++. ..++.+...++.+ +.|-..+++.+.....
T Consensus 322 ~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~----~~p~~~~~~~l~~~~~ 396 (509)
T KOG2504|consen 322 PSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL----FLPFATTYVGLIVFSI 396 (509)
T ss_pred HHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHHH
Confidence 55554 5566 568899999999999999999999999874444 3344444444332 2233566788888899
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMK-----LYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~-----l~il~~~lv~~~v~~~~~e 233 (285)
++|++.|.+..-.+..+.++.+.++ ..++++..+++.++..+|.-+.+.+...+. +|...+..+++.++++...
T Consensus 397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999988889999999888 999999999999999999999888765443 6777777788888888777
Q ss_pred H
Q psy4795 234 V 234 (285)
Q Consensus 234 ~ 234 (285)
+
T Consensus 477 ~ 477 (509)
T KOG2504|consen 477 E 477 (509)
T ss_pred H
Confidence 4
No 168
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.78 E-value=6.1e-07 Score=85.22 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=96.9
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCC---CChHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP---NNPKIFFT 156 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~---~~~~~~~~ 156 (285)
+.|.|+++..|. ..+|.....++....+.-+++|+|+||+|.+++.........++...+....+.. .+.+.++.
T Consensus 240 ~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (417)
T COG2223 240 YLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVA 319 (417)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHH
Confidence 348888998888 3678999999999999999999999999999999988888777776655544322 45566666
Q ss_pred HHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHH
Q psy4795 157 ISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGF 199 (285)
Q Consensus 157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~ 199 (285)
....+++..|.-|...+.++...||++.+.+.++-...-++|-
T Consensus 320 ~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGG 362 (417)
T COG2223 320 VFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGG 362 (417)
T ss_pred HHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccc
Confidence 6777888888889999999999999988888888888888873
No 169
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.77 E-value=4.2e-11 Score=114.51 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
.+.++......++..+|++++|.++||+|||+.+.++.++..++.++..+. +..++++.+.+..++.|++.|...+...
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA-PSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 356678888889999999999999999999999999999888877665542 2123678888889999999999999999
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
.++.|..|+++ +...+..+.+..+|..++..++..+
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 99999987765 8888899999999998888776544
No 170
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.77 E-value=8.5e-08 Score=93.18 Aligned_cols=119 Identities=12% Similarity=0.146 Sum_probs=104.4
Q ss_pred hhhhccch--hH-HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 86 YISCALGV--SS-VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 86 Y~~~~lg~--~~-~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
|+.+.+|+ .+ .|.+...+..+.+++.+.+|.++||+|.|+++.++.+...+..+++.+ .++.+.+.++.+++|
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f----a~Sl~~L~i~R~llG 126 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL----GTSVWHMQLMEVFYS 126 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 55567777 56 889999999999999999999999999999999999988887766555 345778888899999
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
++.|... ..+.++...+|+++ +.+.|..+...++|.+++..++..+
T Consensus 127 vaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 127 VTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999998765 9999999999999999999988763
No 171
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.77 E-value=4.2e-08 Score=93.86 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=111.2
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc----ccCChhH-HHHHHHHHHHHHHHHHHhCCCCC---
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK----FIGRSPL-MALGFIVHCCLIWILVVWRPHPN--- 149 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD----riGrk~~-i~~g~~l~~i~~~~l~~~~p~~~--- 149 (285)
..|.+.|+++.+|+ ..+|.++.+..+.+++..|+.|+++| |+|||+. ++.|.+...+++++++.-.|.+.
T Consensus 21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 45677888899888 47999999999999999999999999 7997666 55677777777766554334221
Q ss_pred -ChHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHH
Q psy4795 150 -NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWESVGFVIAYAYSTHLCA--------RMKLYVM 218 (285)
Q Consensus 150 -~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~lG~~ig~~~s~~l~~--------~~~l~il 218 (285)
.....++...++.++...++.+..++..++.++ ||....+..+++..+|..+..+..+.+-. +...+..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 123346667778999999999999999999864 44777778888888888655544443221 0123334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4795 219 GVVLVTGFCGYVIVEVRHMM 238 (285)
Q Consensus 219 ~~~lv~~~v~~~~~e~~~~~ 238 (285)
.+..++..+++.+.-...|+
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHhhhhhheeee
Confidence 44455555555555544444
No 172
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.75 E-value=7.3e-07 Score=85.12 Aligned_cols=125 Identities=8% Similarity=-0.044 Sum_probs=78.6
Q ss_pred hhhhhhhhc-cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhH-HHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 82 LWGAYISCA-LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPL-MALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 82 ft~~Y~~~~-lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~-i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
|.|.|+++. .|. .+++......+++..++.++.|+++||++||+. +....+...+...+... . +++ ......
T Consensus 264 ~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~ 339 (412)
T TIGR02332 264 WTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASA--T-DHN-LIQLLG 339 (412)
T ss_pred HHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHh--c-CCH-HHHHHH
Confidence 458888763 354 467888999999999999999999999997775 33343344333322211 1 222 222222
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..+.++|.....+.......+.+|++. +.+.++.+.+.++|.+++..+.+.+-
T Consensus 340 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 340 IIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred HHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 222333332222223344456677665 99999999999999999987765543
No 173
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.75 E-value=3.9e-06 Score=81.51 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=101.0
Q ss_pred hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795 84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW 161 (285)
Q Consensus 84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~ 161 (285)
..|.+-.+|-. ...+.+.....+..++.++..++++|+|+|++...+.++..++...++++. +++.++.++...+.
T Consensus 260 ~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~--~~~~~l~~~~~~i~ 337 (467)
T COG2211 260 VYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP--AGSVVLIVVALIIA 337 (467)
T ss_pred heeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc--CcchHHHHHHHHHH
Confidence 56677777773 455777788888888899999999999999999999999888887766654 46677888888899
Q ss_pred HHhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
++|.+..++..-++++|..+ +++ |..+|.+.+.+-+|.+++-++.+.
T Consensus 338 ~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 338 GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998753 234 788999999999999999876555
No 174
>PRK09848 glucuronide transporter; Provisional
Probab=98.74 E-value=2e-07 Score=89.63 Aligned_cols=154 Identities=13% Similarity=0.174 Sum_probs=93.7
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc----CChhHH-HHHHHHHHHHHHHHHHhCCCC----
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI----GRSPLM-ALGFIVHCCLIWILVVWRPHP---- 148 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri----Grk~~i-~~g~~l~~i~~~~l~~~~p~~---- 148 (285)
..|.+.|+++.+|+ .++|.++.+..+..++..|+.|+++||. |||+.. ..+.+...+...+++ +.|.+
T Consensus 28 ~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 106 (448)
T PRK09848 28 ALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF-WVPTDWSHS 106 (448)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHH-hCcCCCCcc
Confidence 34556688998887 5899999999999999999999999985 777654 566655554443332 23311
Q ss_pred CChHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHH-----HHHHHHHHHhhhhh---HHHHHHHH
Q psy4795 149 NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWES-----VGFVIAYAYSTHLC---ARMKLYVM 218 (285)
Q Consensus 149 ~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~-----lG~~ig~~~s~~l~---~~~~l~il 218 (285)
...+..+....+++++.++++++.+++..++.++ ++....+...+..+ +|..++..+++... ........
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~ 186 (448)
T PRK09848 107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT 186 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 1223345556788999999999999988777644 33443333333333 33444444433321 11111222
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4795 219 GVVLVTGFCGYVIVEV 234 (285)
Q Consensus 219 ~~~lv~~~v~~~~~e~ 234 (285)
.++.+++.+++.+...
T Consensus 187 ~~~~v~~~~~~~~~~~ 202 (448)
T PRK09848 187 IVLAIAGMVLYFICFK 202 (448)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3445555555555543
No 175
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.74 E-value=3.8e-07 Score=83.77 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=87.4
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHH--HHHHHHHHhCCCCCChHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHC--CLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~--i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
+.|.|+++.+|. .+.++......++..++.++.|+++||.++++.......... ..........+ .++.+...+.
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 316 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP-AANPLMDLIC 316 (379)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc-chhHHHHHHH
Confidence 347777777776 468899999999999999999999998643322222221111 11112222222 2334455555
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.++.|+......+.......+.+|+++ +.+.++++...++|..++..+.+.+..+
T Consensus 317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 666676555555555677888898766 9999999999999999999888877553
No 176
>KOG2532|consensus
Probab=98.74 E-value=8.2e-08 Score=93.63 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
++-|++...+..|.+++...+|++.||+|-|+++..+.++..++.++.-+.. ..+.+.++++.++.|++.|...+.++
T Consensus 73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa--~~~~~~~~~~R~lqGl~~g~~~pa~~ 150 (466)
T KOG2532|consen 73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA--SIGFYLLLVLRFLQGLGQGVLFPAIG 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--HhcchhhHHHHHHhHHHHhHHHhhhh
Confidence 5788999999999999999999999999999999999888877765543322 23345778889999999999999999
Q ss_pred cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCAR---M--KLYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~~---~--~l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
.+...-.|++ ++...++..-...+|.+++..+++.+|.. | -.|+..++.++-.+.|.++..-..+|+|+
T Consensus 151 ~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~ 225 (466)
T KOG2532|consen 151 SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN 225 (466)
T ss_pred ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 9999999865 58999999999999999999999999865 4 38888888888888777777655555443
No 177
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.74 E-value=3.2e-07 Score=87.31 Aligned_cols=143 Identities=17% Similarity=0.230 Sum_probs=109.6
Q ss_pred hhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 86 YISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 86 Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
|....+|++ +...+.+...++.++++++.|+|.||+|.|+++..+.++..+..+..++... ..-+++...+.|.
T Consensus 278 fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~----~~~f~i~gll~g~ 353 (438)
T COG2270 278 FGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG----ELDFWILGLLVGT 353 (438)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc----cHHHHHHHHHHHH
Confidence 333445663 4667778888899999999999999999999999998877666655554322 3455666788899
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHHHHHHHHHHH
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM-----KLYVMGVVLVTGFCGYVIV 232 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~-----~l~il~~~lv~~~v~~~~~ 232 (285)
..|-.|...-+++++++|+++ ++-|+.|++..-.++..|.+.-+.+...+ -...+++++.++.+.+..+
T Consensus 354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 999999999999999999998 99999999999999999988877665433 3455555556666555443
No 178
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.73 E-value=4.5e-07 Score=83.79 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=88.0
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~ 159 (285)
+.|.|+++.+|. .+.+....+..+...++.+++|+++||+|||+.+..+......+...+......+++.+..+....
T Consensus 247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
T TIGR00886 247 IFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFV 326 (366)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 347788888786 468888899999999999999999999999988877776655555444332221114555555556
Q ss_pred HHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHH
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVG 198 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG 198 (285)
+.+++.|..++...++..+.+|++++++.++.+..+++|
T Consensus 327 ~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 327 ALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence 666777777788888889999988899999988888765
No 179
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.73 E-value=2.3e-06 Score=79.02 Aligned_cols=125 Identities=11% Similarity=0.025 Sum_probs=93.8
Q ss_pred hhhhhhhhc--cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 82 LWGAYISCA--LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 82 ft~~Y~~~~--lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
+.+.|+.+. +|. ++.++....+..+.+++.+++++++||+|+++++..+.++..++.++.... + +... ...
T Consensus 162 w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-~---~~~~-~~~ 236 (310)
T TIGR01272 162 FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-H---GYVA-MWF 236 (310)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-C---CHHH-HHH
Confidence 458888753 465 578888999999999999999999999999999888877766655433332 1 2222 234
Q ss_pred HHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
..+.|++.+...|...+...+.+|++.+++.++. ....+|.++++.+-+.+...
T Consensus 237 ~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 237 VLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHh
Confidence 5578999999999999999999988777777775 44567888888776666554
No 180
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.72 E-value=2.2e-06 Score=83.48 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=71.0
Q ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCC--CChHHHHHHHH
Q psy4795 82 LWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP--NNPKIFFTISG 159 (285)
Q Consensus 82 ft~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~--~~~~~~~~~~~ 159 (285)
+.|.|.++..+.........+.++...+..|++|+++||+|+++++.++.+...++..+.+...|.+ .+.+.+.+...
T Consensus 274 ~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~ 353 (462)
T PRK15034 274 GFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFM 353 (462)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 4467766655332233345567888999999999999999999999999887777665555555533 34555555555
Q ss_pred HHHHhhhhhhcccccceeeeccc
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRR 182 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~ 182 (285)
.+.++.|+-|...+-++.+.||+
T Consensus 354 ~l~~~~G~gngsvfk~ip~~f~~ 376 (462)
T PRK15034 354 GLFLTAGLGSGSTFQMIAVIFRQ 376 (462)
T ss_pred HHHHHhcccchHHHHhhHHHHhh
Confidence 55567777777778888888875
No 181
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.72 E-value=1.2e-08 Score=102.99 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=101.3
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC----C---------------
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR----P--------------- 146 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~----p--------------- 146 (285)
++.+++ .+.|++...+-++..++.++.|++.||.|||+.+.+|.++.+++.++..+-. +
T Consensus 60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 344555 5789999999999999999999999999999999999988887766543210 0
Q ss_pred --------C--------------------CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH
Q psy4795 147 --------H--------------------PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV 197 (285)
Q Consensus 147 --------~--------------------~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l 197 (285)
+ +..+..+++..++.|+|.+...+...+++.|.+|+++ +...++++....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 0 0023456678999999999999999999999998776 9999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy4795 198 GFVIAYAYSTHLC 210 (285)
Q Consensus 198 G~~ig~~~s~~l~ 210 (285)
|.++|+.+++.+.
T Consensus 220 G~~lG~llgg~l~ 232 (633)
T TIGR00805 220 GPAFGYLLGSFCL 232 (633)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999988764
No 182
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.71 E-value=5.6e-08 Score=94.01 Aligned_cols=149 Identities=17% Similarity=0.268 Sum_probs=109.2
Q ss_pred hhhhhhhccc----hhH--HHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHH
Q psy4795 83 WGAYISCALG----VSS--VGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF 155 (285)
Q Consensus 83 t~~Y~~~~lg----~~~--~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~ 155 (285)
...|+...++ +++ +--.+..++.---....++|+++|| +|+|+.++.|.++.+++.+.+.... ...+..++
T Consensus 44 L~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--~~~~~gl~ 121 (498)
T COG3104 44 LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--VSGPGGLY 121 (498)
T ss_pred HHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc--cccccHHH
Confidence 4566665555 743 2244555555556778889999999 8999999999999999987765521 13456778
Q ss_pred HHHHHHHHhhhhhhcccccceeeecccc---chhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----HHHHHHHH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRN---KEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGV----VLVTGFCG 228 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~---~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~----~lv~~~v~ 228 (285)
+..++.++|.|.+.+...+++++++|++ +..+|+++++.-|+|+.++..+.+++..+.-.-.-.. -...+.+-
T Consensus 122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999864 3789999999999999999988888765443332223 33444444
Q ss_pred HHHHH
Q psy4795 229 YVIVE 233 (285)
Q Consensus 229 ~~~~e 233 (285)
|..-.
T Consensus 202 f~~~~ 206 (498)
T COG3104 202 FLLGR 206 (498)
T ss_pred HHHcc
Confidence 44444
No 183
>PRK10133 L-fucose transporter; Provisional
Probab=98.69 E-value=3.2e-06 Score=81.57 Aligned_cols=125 Identities=10% Similarity=-0.061 Sum_probs=93.6
Q ss_pred hhhhhh-hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 82 LWGAYI-SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 82 ft~~Y~-~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
|.+.|+ ++.+|. ...|+.+..+.++..++++++|++.||+|||+++..+.++......... +.++ . ......
T Consensus 280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~---~-~~~~~~ 354 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGG---H-VGLIAL 354 (438)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCC---h-HHHHHH
Confidence 346664 566777 4688999999999999999999999999999998888776655443333 2331 1 224456
Q ss_pred HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.++|++.+...|..++...+.+|++.+.+.++.. .+.+|..++..+.+.+...
T Consensus 355 ~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~ 407 (438)
T PRK10133 355 TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHh
Confidence 7899999999999999999999887777777665 4556777776666666553
No 184
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.64 E-value=1.8e-07 Score=89.65 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=80.7
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
.+.+.|+++.+|+ +++|+++..++++..+++++.|+++||+|| |+++.++.+...+......+ .++++.+++.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 98 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ----VTTPAGMFPV 98 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH
Confidence 3557788887777 689999999999999999999999999965 76777777666554444333 2345666666
Q ss_pred HHHHHHhhhhhhcccccceeeeccc---cchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRR---NKEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~---~~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..+.|++.+...+..+++......+ |....+.-.|.+-++|.++|..+++.+.
T Consensus 99 ~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 99 LLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLD 154 (418)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhc
Confidence 6677776554444444432211110 0011112224444678888888887763
No 185
>PRK11462 putative transporter; Provisional
Probab=98.63 E-value=7.3e-07 Score=86.63 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=95.8
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhH-HHHHHHHHHHHHHHHHHhCCCCC-C-
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPL-MALGFIVHCCLIWILVVWRPHPN-N- 150 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~-i~~g~~l~~i~~~~l~~~~p~~~-~- 150 (285)
..|...|+++.+|+ ..+|.++++.-+..++.-|+.|+++|| +||++. +++|.+...++..++ ++.|+.+ +
T Consensus 29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll-f~~p~~s~~~ 107 (460)
T PRK11462 29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA-YSTPDLSMNG 107 (460)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH-HhCCCCCcch
Confidence 45778888899998 479999999999999999999999996 788655 556777777766443 3455322 1
Q ss_pred -hHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHHHHHHHHHHHh
Q psy4795 151 -PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWESVGFVIAYAYS 206 (285)
Q Consensus 151 -~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~lG~~ig~~~s 206 (285)
...+++...++.++..+++.+..++.+++.++ ||....+......++|..++..+.
T Consensus 108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788999999999999999998754 456777788888888776665553
No 186
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.62 E-value=4.7e-07 Score=85.25 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=90.3
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
.|.|.|+++ +|. .++|+++..+.+...+++++.|.++||+||++................+.. . .++++.+++..
T Consensus 25 p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~l~~~~ 101 (382)
T TIGR00902 25 PFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-G-AHNAWLLFIAI 101 (382)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-h-hhhHHHHHHHH
Confidence 455677754 566 689999999999999999999999999998544322221111111111111 1 35677777777
Q ss_pred HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.+.|.+.+...+...++..+ .+++++.+++..+.+.++|.++|...++.+..
T Consensus 102 ~l~~~~~~~~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 102 GLFALFFSAGMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred HHHHHHHccchhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888877777777776543 45566899999999999999999998887754
No 187
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.61 E-value=5.9e-07 Score=84.93 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=79.5
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
+.+.|+.+.+|. .++|+......+...+.+++.|.++||+|||+.++ .+.+...++.....+ .++++.+++..
T Consensus 37 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 112 (393)
T PRK15011 37 TLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAW----NRNYFVLLFVG 112 (393)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHH
Confidence 456677777776 57888877666655555555555599999998754 444443333332222 23455554444
Q ss_pred HHHHHhhhhhhcccccceeeecccc-ch--hHhHHHHHHHHHHHHHHHHHhhhhhH--HHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRN-KE--AAFSNFRLWESVGFVIAYAYSTHLCA--RMK 214 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~-~~--~afs~~~l~~~lG~~ig~~~s~~l~~--~~~ 214 (285)
.+.|...+...+...++..+..|++ +. ...+..+...++|..+|..+++.+.. .|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~ 173 (393)
T PRK15011 113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFT 173 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH
Confidence 4444444455666666666655443 22 22367888999999999999988753 444
No 188
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.57 E-value=4.6e-06 Score=79.08 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=109.5
Q ss_pred cCCCCcchHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795 68 PHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH 147 (285)
Q Consensus 68 ~~~~~p~l~~~~~~ft~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~ 147 (285)
....++++......|. +...+++++-.++-.+-.++++..|++.||+|+|+-+++|+.+.+++..+.+- .++
T Consensus 29 ~~l~diLip~l~~~f~-------ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p-Aa~ 100 (422)
T COG0738 29 TCLNDILIPHLKEVFD-------LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP-AAS 100 (422)
T ss_pred hhcchhhHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hhh
Confidence 3345566665555443 33367889999999999999999999999999999999999998887655332 223
Q ss_pred CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
..++..+....+++|.|-++.++..|.+++.+.|++. ..=.++.+-+..+|..+|+.+++.+-.
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999999998765 666778888899999999999888766
No 189
>KOG0252|consensus
Probab=98.57 E-value=3.7e-07 Score=87.65 Aligned_cols=114 Identities=16% Similarity=0.058 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC--C-CChHHHHHHHHHHHHhhhhhhc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH--P-NNPKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~--~-~~~~~~~~~~~l~Gig~g~~~~ 170 (285)
...+.+....-+++++|++++|++.||+|||+++...+++..++.+..-+...+ + .-.++++...+++|+|.|.=+|
T Consensus 84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP 163 (538)
T KOG0252|consen 84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP 163 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence 345678888889999999999999999999999999988888877643332221 2 2346667779999999998887
Q ss_pred ccccceeeeccccc-h----hHhHHHHHHHHHHHHHHHHHhh
Q psy4795 171 QVNGLYGTLFRRNK-E----AAFSNFRLWESVGFVIAYAYST 207 (285)
Q Consensus 171 ~~~ali~~~fp~~~-~----~afs~~~l~~~lG~~ig~~~s~ 207 (285)
-..++.+|.-.+++ + ..|++..+-.-.|..++..+..
T Consensus 164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~ 205 (538)
T KOG0252|consen 164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSA 205 (538)
T ss_pred chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHH
Confidence 66666666544333 4 3455555555555555555443
No 190
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.9e-06 Score=81.83 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=98.7
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|+ .|.+++..+-.+...+.-+..|.+.||+|.|++..+++++..+-.+.+.+... .++++.++++..+.|++.|
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~-~~~~~~ll~~gll~G~~Ga 120 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT-YPSTWQLLVIGLLLGLAGA 120 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHhcccc
Confidence 56666 58899999999999999999999999999999999999887776666555444 4555888898999999887
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
.+-. -.+.++..||+++ +.|.+++- +-|+|.++...+.+.+
T Consensus 121 sFav-~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v 162 (417)
T COG2223 121 SFAV-GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV 162 (417)
T ss_pred eehc-ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence 7654 5577888999888 99999999 9999999998887774
No 191
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.53 E-value=2e-05 Score=74.43 Aligned_cols=183 Identities=11% Similarity=0.041 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHH-HHHHHHhcccCCCC--------cch-HH----------
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCC-LIWILVVWRPHPNN--------PKI-FF---------- 77 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~-~l~~fl~~e~~~~~--------p~l-~~---------- 77 (285)
.|.......++..+..+..+.+.+++|||..++...++.++ .++.+...+++|+. +.. .+
T Consensus 116 ~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~ 195 (368)
T TIGR00903 116 ISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLW 195 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHH
Confidence 34555666777778888888888889998665553333333 22223232211110 000 00
Q ss_pred --------------HHhhhhhhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCCh---hHHHH-HHHHHHHHH
Q psy4795 78 --------------TISGLWGAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRS---PLMAL-GFIVHCCLI 138 (285)
Q Consensus 78 --------------~~~~ft~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk---~~i~~-g~~l~~i~~ 138 (285)
....+.|.|+++ .|.+ ..+....+..+...++ .++++||..|| +.... ..++..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~ 271 (368)
T TIGR00903 196 IIGAILGFGVALFDNLAIWLEAALRP-AGLEDIAGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFF 271 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 001234888865 4553 2455554444444444 47788876653 33222 222222222
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 139 WILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 139 ~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
..+ ... ++.+.......+.|++.....+..+++..|.+|++. +++.++.+...++|..++....+.
T Consensus 272 ~~~-~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~ 338 (368)
T TIGR00903 272 LAL-AFE---LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML 338 (368)
T ss_pred HHH-HHc---cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence 121 111 122333444455566555565667788999999866 999999999999998777666543
No 192
>KOG0569|consensus
Probab=98.52 E-value=1.7e-05 Score=77.53 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--CCCCCChHH---HHHHHHHHHHhhhhh
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--RPHPNNPKI---FFTISGLWGVGDAVW 168 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--~p~~~~~~~---~~~~~~l~Gig~g~~ 168 (285)
..+-++....++.+.+.++++..+.||.||||+++.+..+..++.+.+... ..+....|. .+++.++..++.++-
T Consensus 305 ~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G 384 (485)
T KOG0569|consen 305 EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG 384 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC
Confidence 345688899999999999999999999999999999988777665442211 111111222 234445555555555
Q ss_pred hccc-ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795 169 QTQV-NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY 205 (285)
Q Consensus 169 ~~~~-~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~ 205 (285)
-+++ .-+.+|+||++. ..|.+.-.+.+.++..+--..
T Consensus 385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~ 423 (485)
T KOG0569|consen 385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA 423 (485)
T ss_pred CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 445578998765 888887777776665444333
No 193
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.51 E-value=3e-06 Score=83.07 Aligned_cols=128 Identities=12% Similarity=0.174 Sum_probs=92.8
Q ss_pred hhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHhhhhhhhccc-----CChhH-HHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795 81 GLWGAYISCA-LGVSSVGYVMICFGVVNAICSLLFGTLMKFI-----GRSPL-MALGFIVHCCLIWILVVWRPHPNNPKI 153 (285)
Q Consensus 81 ~ft~~Y~~~~-lg~~~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~~-i~~g~~l~~i~~~~l~~~~p~~~~~~~ 153 (285)
...|.|.++. ...+++|.... .+... +..++.|.++||+ |||+. +..+.+...++...+.+..| .++.+.
T Consensus 33 ~~l~~~l~~~g~~~~~ig~~~~-~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~-~~~l~~ 109 (491)
T PRK11010 33 GTLQAWMTVENIDLKTIGFFSL-VGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP-GTQLRW 109 (491)
T ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCC-cchHHH
Confidence 3345555543 33457776522 22222 6889999999999 99886 55666666666555544444 456777
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+.+..++.|++.+...+...++..+.+|+++ +.+.++.....++|+.++......+..
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~ 168 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD 168 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777888999999999999999999998554 889999999999999999877766544
No 194
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.45 E-value=3e-06 Score=85.98 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=95.4
Q ss_pred hhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHh-CCCC---CChHHHH
Q psy4795 83 WGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVW-RPHP---NNPKIFF 155 (285)
Q Consensus 83 t~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~-~p~~---~~~~~~~ 155 (285)
...|+++.+|.+ .+..+...+....-+.+.++|.++|+ +||++.+.++.++..++..++... .|.. ......+
T Consensus 10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l 89 (654)
T TIGR00926 10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL 89 (654)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence 345666677773 33345555666667778889999995 999999999999888777655432 1111 1123456
Q ss_pred HHHHHHHHhhhhhhcccccceeeecccc----chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRN----KEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~----~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+...+..+|.|...+...+..++.++++ +...|+.+++..|+|+.++..+.+++.
T Consensus 90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999642 367899999999999999988887775
No 195
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.44 E-value=4.8e-05 Score=74.83 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHhhh----hhhhcccCChhHHHHHHHHHHHHHHHHHHhCC--C---CCChHHHHHHHHHHHHhhh
Q psy4795 96 VGYVMICFGVVNAICSLLF----GTLMKFIGRSPLMALGFIVHCCLIWILVVWRP--H---PNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~----G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p--~---~~~~~~~~~~~~l~Gig~g 166 (285)
.+++....++..++.+++. +++.||.+..+.+.+|.++.++++..+..... + .-+.++.....+++|+|..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4456666776666776766 67777777778888999988888776543221 0 1135567777899999999
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhh
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYST 207 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~ 207 (285)
+..|..++++.+..|++. +...+.+.+...+|..++-.+++
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 99999998888888877766653
No 196
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.44 E-value=1.7e-06 Score=77.75 Aligned_cols=151 Identities=12% Similarity=0.064 Sum_probs=107.7
Q ss_pred HHHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC---CCCh
Q psy4795 77 FTISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH---PNNP 151 (285)
Q Consensus 77 ~~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~---~~~~ 151 (285)
|..+.|+|.. .+.+|+ ++...+...--++..+ +++.|.+.||+|++.++.+|.+...+++..+.....+ +.++
T Consensus 19 Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~ 96 (250)
T PF06813_consen 19 YTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPV 96 (250)
T ss_pred cchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence 4445555533 346777 4566777777777765 6889999999999999999999999998765443221 2456
Q ss_pred HHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHH
Q psy4795 152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAY-STHLCARMKLYVMGVVLVTGFCGY 229 (285)
Q Consensus 152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~-s~~l~~~~~l~il~~~lv~~~v~~ 229 (285)
|...+...+.|.+.+.+++..-....+.||++||.+.++-+-...++.++-..+ ......+..-++++.......++.
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l 175 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCL 175 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 777777777788888888887777789999999999999999999988776555 444444445555444444444443
No 197
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.43 E-value=1.6e-06 Score=84.88 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHHHHHHhhhhhhcccccceeeec
Q psy4795 102 CFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF 180 (285)
Q Consensus 102 ~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~-~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~f 180 (285)
...++.+++.+++++++||+|||++++.+..+..++...+... .+.+.+... ....+...+......+..+.+..|.+
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFL-AIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3445666788889999999999999988877666554433221 111111111 11111111222223445566678999
Q ss_pred cccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 181 RRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 181 p~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
|++. +.+.++.+...++|..++....+.+..
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 9876 999999999999999999887776544
No 198
>KOG2533|consensus
Probab=98.42 E-value=3.6e-06 Score=82.70 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=42.1
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhHHHHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPLMALGFIVHCC 136 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~i~~g~~l~~i 136 (285)
|.|.|+++..|. .++..+.+.+.++.+++.+++|.++|| ..++......+.+...
T Consensus 295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI 355 (495)
T ss_pred HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 458888885556 467799999999999999999999999 5666665555544333
No 199
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.37 E-value=2.1e-06 Score=85.85 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=97.4
Q ss_pred hhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795 86 YISCALGV-SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG 164 (285)
Q Consensus 86 Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig 164 (285)
+....+|- ....++.....+++.++.++.|+|+|.+|||..++.+.++..++.+.... .++...++....+.|+|
T Consensus 69 ~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at----A~~~~~~iag~~l~Gvg 144 (599)
T PF06609_consen 69 YINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT----AQNMNTFIAGMVLYGVG 144 (599)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc----CCcHHHHHHHHHHHHHh
Confidence 34445565 46678888899999999999999999999999999999998888876544 56778888889999999
Q ss_pred hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL----CARMKLYVMGVVLVTGFCGYVIV 232 (285)
Q Consensus 165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l----~~~~~l~il~~~lv~~~v~~~~~ 232 (285)
.|.... ....++|+.|.+. ..+.+......-....++..++..+ ..||-.|+..+.-.++++...+.
T Consensus 145 aG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 145 AGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred hHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 766653 4566899997543 4444433332222222333443333 34566777666666666555444
No 200
>KOG2532|consensus
Probab=98.33 E-value=2.1e-05 Score=76.93 Aligned_cols=204 Identities=11% Similarity=0.104 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhhHhh-hCchHHHHHHHHHHHHHHHHHHhc-c---------------------------cCCCCcchH
Q psy4795 26 GVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVW-R---------------------------PHPNNPKIF 76 (285)
Q Consensus 26 gi~~~~~a~~~G~l~~~-~G~~~~~~~g~~~~~~~l~~fl~~-e---------------------------~~~~~p~l~ 76 (285)
-+++.+.-++.|.|.+. .||+.++++-.++.++..++++.. . ++++.|+..
T Consensus 174 q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~ 253 (466)
T KOG2532|consen 174 QLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKA 253 (466)
T ss_pred HHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHH
Confidence 37777778889999999 999877776666665543333222 1 001223322
Q ss_pred HH---------------------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCCh--------h
Q psy4795 77 FT---------------------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRS--------P 125 (285)
Q Consensus 77 ~~---------------------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk--------~ 125 (285)
.. +..|.|.|+.+.+|. .+.|+...+--+.+.+..+++|.++||.-+| |
T Consensus 254 i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk 333 (466)
T KOG2532|consen 254 ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK 333 (466)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence 21 123569999999887 6899999999999999999999999987552 2
Q ss_pred HHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeee-ccccchhHhHHHHHHHHHHHHHHH
Q psy4795 126 LMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTL-FRRNKEAAFSNFRLWESVGFVIAY 203 (285)
Q Consensus 126 ~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~-fp~~~~~afs~~~l~~~lG~~ig~ 203 (285)
++- ++....+++++.+ -..+.++. +...+ ....+++....+..-....... -|+.-+...++.++.-++...++.
T Consensus 334 ifn~i~~~~~ai~l~~l-~~~~~~~~-~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P 410 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVL-AFTSDEHR-LLAVI-LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAP 410 (466)
T ss_pred HHHhHHHHHHHHHHHee-eecCCCcc-hHHHH-HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 221 2222233322222 22332232 22222 2222232222222222222223 555559999999999999999999
Q ss_pred HHhhhhhH-----HHH--HHHHHHHHHHHHHHHHHH
Q psy4795 204 AYSTHLCA-----RMK--LYVMGVVLVTGFCGYVIV 232 (285)
Q Consensus 204 ~~s~~l~~-----~~~--l~il~~~lv~~~v~~~~~ 232 (285)
.+-+.++. +|+ ..+..++.+++.+.|.+.
T Consensus 411 ~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 411 LLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 99777762 344 334444455555444433
No 201
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.30 E-value=3.3e-05 Score=75.08 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=107.5
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhH-HHHHHHHHHHHHHHHHHhCCC---CC
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPL-MALGFIVHCCLIWILVVWRPH---PN 149 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~-i~~g~~l~~i~~~~l~~~~p~---~~ 149 (285)
..|...|+++..|+ ..+|.+..+.=+..++.-|+.|.++|| +||++. ++.|.+...+... +.++.|+ ..
T Consensus 32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~-l~F~~p~~~~~~ 110 (467)
T COG2211 32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV-LLFITPDFSMTG 110 (467)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH-HHHcCCCcccCc
Confidence 56778899999999 478999999999999999999999995 888555 5566666666554 4444553 23
Q ss_pred ChHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHHHHHHHHHHHh-hhhhH----H---HHHHHHH
Q psy4795 150 NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWESVGFVIAYAYS-THLCA----R---MKLYVMG 219 (285)
Q Consensus 150 ~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~lG~~ig~~~s-~~l~~----~---~~l~il~ 219 (285)
.....++...+++++-.+.+.|-.++.+++.++ ||.+..+......++|..+....- +.... + -..+...
T Consensus 111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~ 190 (467)
T COG2211 111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTAL 190 (467)
T ss_pred chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 456677778999999999999999999999754 556666666666677744443332 33221 1 1233344
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy4795 220 VVLVTGFCGYVIVEVRHMMK 239 (285)
Q Consensus 220 ~~lv~~~v~~~~~e~~~~~~ 239 (285)
++.+++.+.+.+..+..|++
T Consensus 191 ~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 191 VLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 44455555555554444433
No 202
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.29 E-value=0.00011 Score=70.53 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=99.1
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHH----
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF---- 155 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~---- 155 (285)
|.+.|+++.-|. +..|..+.+..+.++..-...+++.+|+|.++++.++.+...+=+.......+ +.+...
T Consensus 229 f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~---~~~~~~~~~~ 305 (400)
T PF03825_consen 229 FFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD---PWPFIVALQL 305 (400)
T ss_pred HHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHHH
Confidence 346666665544 45778888888999999999999999999999999999887776655544322 222222
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHH-HHHHHHHHHHHHhhhhhHH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRL-WESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l-~~~lG~~ig~~~s~~l~~~ 212 (285)
....+-|+.-|.+......++.+..|++. .++-+++.. ...+|.++|..+++.+..+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22356899999999999999999999877 889998776 4679999999999998765
No 203
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.28 E-value=0.00024 Score=69.45 Aligned_cols=114 Identities=10% Similarity=0.051 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh----hhhcc-cCChhHH--HHHHHHHHHHHHHHHH---hC--CCCCChHHHHHHHHHHHH
Q psy4795 96 VGYVMICFGVVNAICSLLFG----TLMKF-IGRSPLM--ALGFIVHCCLIWILVV---WR--PHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G----~LsDr-iGrk~~i--~~g~~l~~i~~~~l~~---~~--p~~~~~~~~~~~~~l~Gi 163 (285)
.++.....++.-++.+|+.. ++.|| .+++... .+|.++..+++..+.. .. +.+.++++.....+++|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 56788888888888888755 44554 3333433 6777777777655432 11 113477888888999999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|+....+..++++.+..|++. +...+.+.+.+.+|..++..+++..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 9999999999999999998877654
No 204
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.22 E-value=2.2e-06 Score=82.19 Aligned_cols=128 Identities=14% Similarity=0.206 Sum_probs=75.9
Q ss_pred hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC--CC-CCChHHHH
Q psy4795 81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR--PH-PNNPKIFF 155 (285)
Q Consensus 81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~--p~-~~~~~~~~ 155 (285)
.|.+.|+++..|+ +++|.+..+..+...+.+|+.|.++||.|.||-.+.......+...+.+.+. |- ..|.++-
T Consensus 28 pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg- 106 (412)
T PF01306_consen 28 PFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLG- 106 (412)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHH-
T ss_pred HHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4668889887777 6899999999999999999999999999976654433332222222222211 10 1121111
Q ss_pred HHHHHHHHhhhhhhcccccce---eeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLY---GTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali---~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
..+-|+..+....+..... .+-..++.+--++=-|+|-++|.+++..+++.+..
T Consensus 107 --~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~ 163 (412)
T PF01306_consen 107 --AIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN 163 (412)
T ss_dssp --HHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee
Confidence 1111222232222222222 12222333677889999999999999999988754
No 205
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.20 E-value=9.1e-05 Score=71.16 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=102.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcc
Q psy4795 92 GVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQ 171 (285)
Q Consensus 92 g~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~ 171 (285)
|-+..|+.....-+.+++.-.+..++.+|+|.|+.++++..+..+=+....+ .++++.+.+.-.+-|+-.++.-..
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~----~~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF----ATNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3356889999999999999999999999999999999988877766655444 456788888899999999999999
Q ss_pred cccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHH
Q psy4795 172 VNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCARMK---LYVMGVV 221 (285)
Q Consensus 172 ~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~~~---l~il~~~ 221 (285)
..-++.+.+|++. .+...+ +++...+|..+....++.++.+.. .|..++.
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~ 387 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGL 387 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHH
Confidence 9999999999887 788886 689999999999999999988763 4544443
No 206
>KOG4686|consensus
Probab=98.20 E-value=9.8e-06 Score=74.01 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=88.8
Q ss_pred hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH-HHHHHHhCCCCCChHHHHHHHHH
Q psy4795 84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPHPNNPKIFFTISGL 160 (285)
Q Consensus 84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~-~~~l~~~~p~~~~~~~~~~~~~l 160 (285)
|.++++..|++ ..+-+....-....+.+|++|.++||.||+...+....+..+. =..+.+.. .++ ++...+
T Consensus 288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---lsP---y~~m~~ 361 (459)
T KOG4686|consen 288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---LSP---YTSMTF 361 (459)
T ss_pred HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh---ccH---HHHHHH
Confidence 77788889984 4556666666777899999999999999998877666543332 22222211 112 445566
Q ss_pred HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+|+..++.--..-..++.+.|+++ +++++..+-.||+|.++...+.+.+
T Consensus 362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 787777766666778888999988 9999999999999999998887765
No 207
>KOG2325|consensus
Probab=98.19 E-value=5.5e-06 Score=80.73 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHH--HHHhCCCCCChHHHHHHHHHHHHhhhhhhc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWI--LVVWRPHPNNPKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~--l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~ 170 (285)
+.-|++.....++.++.++++|..+.|.++ |+.++.|.++++++-++ .+-..|+ +..++..++.++.|+|.|....
T Consensus 71 ~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~-~~~y~mL~~R~l~Gvg~~n~a~ 149 (488)
T KOG2325|consen 71 TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN-GVKYLMLVARILTGVGVGNFAV 149 (488)
T ss_pred chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHcCcCcccHHH
Confidence 568899999999999999999999999885 55566666666655433 3333443 3678888889999999876643
Q ss_pred ccccceee-eccccchhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 171 QVNGLYGT-LFRRNKEAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 171 ~~~ali~~-~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+-+++++ ..+++|.+|++.....+.+|..+|+.++..+
T Consensus 150 -lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 150 -LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred -HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 4455555 4678888888888877777777777666553
No 208
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.18 E-value=2.6e-05 Score=73.43 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=69.5
Q ss_pred hhhhhhhhhhccch--hHHHHH--HHHHHHHHHHHHhhhhh-hhcccCChhHHHHHHHHH-HHHHHHHHHhCCCCCChHH
Q psy4795 80 SGLWGAYISCALGV--SSVGYV--MICFGVVNAICSLLFGT-LMKFIGRSPLMALGFIVH-CCLIWILVVWRPHPNNPKI 153 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v--~~~~gv~~~i~s~l~G~-LsDriGrk~~i~~g~~l~-~i~~~~l~~~~p~~~~~~~ 153 (285)
..+.|.|+++. |. +++|+. +....+...+.+|+.++ .+||.||||..++...+. ..+...+....+...+..+
T Consensus 21 ~p~lp~~l~~~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (390)
T TIGR02718 21 MDALPTLLRED-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGW 99 (390)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHH
Confidence 44567787664 55 688875 45668888888988854 799999999976655332 2222222222332222233
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY 205 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~ 205 (285)
......+.++..+...+...++..+..++++ +...+.......+|..+|...
T Consensus 100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~ 152 (390)
T TIGR02718 100 AVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555556555554433 444444444445555555543
No 209
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.15 E-value=0.0013 Score=62.78 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=105.6
Q ss_pred hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD-riGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
|--+.+|+ .++--.....+.+..++-.+.|++.. |.++++...+|......++..+....+ .++.+.+....+++|
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~-~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP-LGSPWLFRPGVFLLG 312 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHH
Confidence 44455676 57778888899999999989998765 799999999999988888877666655 345788888899999
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
++.|++....-+..+++.++++ +...+.+...|+++..+|.+.++.+-+-.
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997776 99999999999999999999988765433
No 210
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.10 E-value=2.2e-05 Score=75.27 Aligned_cols=116 Identities=16% Similarity=0.309 Sum_probs=80.8
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
|.+.|+++ .|. .++|.++...++..++++++.|.++||.++ |+++.+..++.++....... .++++.++.+.
T Consensus 24 ~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~----~~~f~~~~~~~ 98 (400)
T PF03825_consen 24 YLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF----SSSFWWLFVIM 98 (400)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHH
Confidence 45667665 445 699999999999999999999999999764 56655554544443323222 33456666666
Q ss_pred HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAY 203 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~ 203 (285)
.+..+......+..+++..+..+ +++.-++-.|+|-++|..++.
T Consensus 99 ~l~~~~~~p~~pl~dsi~~~~~~-~~~~~YG~iRlwGSiGf~~~~ 142 (400)
T PF03825_consen 99 LLFSFFFSPTMPLSDSIALSYLG-DRGKDYGRIRLWGSIGFIVAA 142 (400)
T ss_pred HHHHHHHccHHHHHHHHHHHHcc-cccCCCCcchhhhhHHHHHHH
Confidence 66666655555555565555553 456888999999999998883
No 211
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.02 E-value=0.0012 Score=63.24 Aligned_cols=110 Identities=9% Similarity=-0.008 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccc
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGL 175 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~al 175 (285)
.+..+..+-.+..++.+++|++.||+++|+++.+..+...++.+.... .+ + ........+.|++.+...|..++.
T Consensus 271 a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-~~--~--~~~~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 271 AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-AG--G--HVGLYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-cC--C--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555778899999999999999999888777766665544443 22 2 123455667778777777999999
Q ss_pred eeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 176 YGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 176 i~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
..+..+++..++.+..-+.- +|.++.+.+-+.+..
T Consensus 346 ~~~~~g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 346 ALKGLGQDTKYGAAGLVMAI-IGGGIVPPLQGFIID 380 (410)
T ss_pred HHhhhhhhhhhhHHHHHHHH-hccchHHHHHHHHHH
Confidence 99999887755555444443 888888888878776
No 212
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.96 E-value=0.00014 Score=70.92 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=88.9
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccC-----ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIG-----RSPLMALGFIVHCCLIWILVVWRPHPNNPKIF 154 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriG-----rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~ 154 (285)
-.+.++.+.+|+ .+++.......+.+.+-.+ .|.++||++ ||+.++++.++.. +...... .+.+++....
T Consensus 47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~-~~~~~~l-~~~~~~~~~~ 123 (468)
T TIGR00788 47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS-AILYGLL-PGKVSSAKVA 123 (468)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH-HHHHHhc-ccccchHHHH
Confidence 345566777787 5787788888888888555 999999998 7888888776653 1211222 2223333444
Q ss_pred HHHHHHHHHhhhhhhcccccceeeeccccchh---HhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 155 FTISGLWGVGDAVWQTQVNGLYGTLFRRNKEA---AFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 155 ~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~---afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
.+..++.+++.+.......+++.|..+++++. ..+.....+++|..+|..+++.+..+
T Consensus 124 ~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~ 184 (468)
T TIGR00788 124 AAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK 184 (468)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888999999999999999998844333 33344455679999999998887654
No 213
>KOG2504|consensus
Probab=97.95 E-value=3.2e-05 Score=76.40 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHH-HHHHHHHHHhhhhhhccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIF-FTISGLWGVGDAVWQTQV 172 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~-~~~~~l~Gig~g~~~~~~ 172 (285)
++++++..+...+..+.+|+.+.+.||+|.|++++.|.++..++++...+. .+.|.+ +...++.|+|.|+...+.
T Consensus 81 ~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~----~~i~~l~lt~gvi~G~G~~~~~~pa 156 (509)
T KOG2504|consen 81 SQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA----TSLWQLYLTFGVIGGLGLGLIYLPA 156 (509)
T ss_pred cHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhccchhhhcch
Confidence 468899999999999999999999999999999999999999999887663 345554 455778899999999999
Q ss_pred ccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 173 NGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 173 ~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..+++..|+++|+.|.++-..-..+|.++-..+..++.
T Consensus 157 iviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 157 VVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred hhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 99999999999988888877777776666655555543
No 214
>KOG0253|consensus
Probab=97.88 E-value=3.3e-05 Score=72.84 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=99.8
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
++.-|+ .+..++..+.-.++.+++...|.++|++|||+...+..+...+.-.. .-.++++..+.+...++|+|.
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~i----s~~spnf~~L~~f~~l~~~g~ 180 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVI----SGASPNFASLCVFRALWGFGV 180 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHh----hcCCCCeehhhHHHHHHhccC
Confidence 344455 35667888888999999999999999999999888777765554332 222456677777789999999
Q ss_pred hhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 166 AVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYS----THLCARMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s----~~l~~~~~l~il~~~lv~~~v~~~~~e 233 (285)
|. .|+..+++.+.-|...+.--++...+..+|.++.-.++ ..+..+|.+....+-+.+..+.+.|+.
T Consensus 181 gg-~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 181 GG-LPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVY 251 (528)
T ss_pred CC-ccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence 88 88899999998876553333433366677776654443 445666766666666666666666664
No 215
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.86 E-value=0.00075 Score=58.26 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
...++.+..+.+...+++++.|+++||.|||+.+..+......+.+...+ .++ .+.+...+.....|++.+...+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL-APN-VGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh-Ccc-chHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35778888899999999999999999999998888777653333222222 221 3456666667778999999999999
Q ss_pred cceeeeccc--cchhHhHHHHH-HHHHHHHHHHHHhhhhhHH
Q psy4795 174 GLYGTLFRR--NKEAAFSNFRL-WESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 174 ali~~~fp~--~~~~afs~~~l-~~~lG~~ig~~~s~~l~~~ 212 (285)
+++.+.+|+ +++...+.... ..++|..++..+++.+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 55777777777 6788888888776665543
No 216
>KOG3764|consensus
Probab=97.81 E-value=8.4e-05 Score=70.59 Aligned_cols=217 Identities=15% Similarity=0.105 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhCch-HHHHHHHHHHHHHHHHHHhcccCCCCc--------chHHHHh------hh
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKFIGRS-PLMALGFIVHCCLIWILVVWRPHPNNP--------KIFFTIS------GL 82 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~-~~~~~g~~~~~~~l~~fl~~e~~~~~p--------~l~~~~~------~f 82 (285)
.|.++-..+++..++.+.-|-+=+..|.+ |.++++++.-+-..+-++..||+..++ +.-.+.- .+
T Consensus 198 mGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~dP~I~~~ag 277 (464)
T KOG3764|consen 198 MGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLMDPYILLIAG 277 (464)
T ss_pred HHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHHHHhCchHhhhhc
Confidence 57777788888888888888888888886 444454444433555566667654444 1111110 00
Q ss_pred -------h--------hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHHHHH
Q psy4795 83 -------W--------GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWILVV 143 (285)
Q Consensus 83 -------t--------~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~l~~ 143 (285)
. +.|..+.+.. .+.|.+-....+...++..++|.++||++ |......+.+....+..+..+
T Consensus 278 ai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~ 357 (464)
T KOG3764|consen 278 AITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF 357 (464)
T ss_pred chhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh
Confidence 0 2333333443 25777777788899999999999999999 655555555544433333222
Q ss_pred hCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccc---c---c-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy4795 144 WRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR---N---K-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLY 216 (285)
Q Consensus 144 ~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~---~---~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~ 216 (285)
.+++.-..+-...+|++.+...+..-..++.+... + . +..+++.....++|+++|..+++.+-..+-..
T Consensus 358 ----~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~ 433 (464)
T KOG3764|consen 358 ----ATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE 433 (464)
T ss_pred ----hhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence 23344444445555555555555554444444432 2 3 56666777777777777777777765444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4795 217 VMGVVLVTGFCGYVIVEVRHMM 238 (285)
Q Consensus 217 il~~~lv~~~v~~~~~e~~~~~ 238 (285)
.+....-+.-+.|.-+-...|+
T Consensus 434 wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 434 WLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444433333
No 217
>KOG2533|consensus
Probab=97.79 E-value=8.3e-05 Score=73.17 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=92.3
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
..+++ .+-+.+..++-++.+++.+.+|.|.||++-.+.+....+...+..++... -.+.+.+.+..+++|+..+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----~~s~~~~ialr~llGl~es 149 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----VHSFPGLIALRFLLGLFES 149 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHhc
Confidence 34455 57888999999999999999999999999655555444444333322222 2467888888999999999
Q ss_pred hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
...|....+++..|.+++ +.-+++++...++|..+|-.+++.
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g 192 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYG 192 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHH
Confidence 999999999999997655 999999999999999999888766
No 218
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.78 E-value=0.0017 Score=61.01 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=80.4
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795 85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG 164 (285)
Q Consensus 85 ~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig 164 (285)
.|-+..+..++++.+..+--+..++.+++.|.++||+|||+..+.-.+++.++.+... .++++.+++..++-|++
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-----~~~~~~L~~GRvlgGia 134 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-----SSNYPVLLLGRVLGGIA 134 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHH
Confidence 3433334447888888888888899999999999999999998888888777664321 45678888989999999
Q ss_pred hhhhhcccccceee-----eccccc-hhHhHHHHHHHHHHHHHH
Q psy4795 165 DAVWQTQVNGLYGT-----LFRRNK-EAAFSNFRLWESVGFVIA 202 (285)
Q Consensus 165 ~g~~~~~~~ali~~-----~fp~~~-~~afs~~~l~~~lG~~ig 202 (285)
.++..+..-+-+.. -+|++. +..|+...++.|-..+|+
T Consensus 135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~ 178 (354)
T PF05631_consen 135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIG 178 (354)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHH
Confidence 99988877665532 245554 566665554444433333
No 219
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.73 E-value=0.00088 Score=63.91 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcccC-----Chh-HHHHHHHHHHHHHHH--HH-HhCCC-------CCChH--HHHHHHHHH
Q psy4795 100 MICFGVVNAICSLLFGTLMKFIG-----RSP-LMALGFIVHCCLIWI--LV-VWRPH-------PNNPK--IFFTISGLW 161 (285)
Q Consensus 100 ~~~~gv~~~i~s~l~G~LsDriG-----rk~-~i~~g~~l~~i~~~~--l~-~~~p~-------~~~~~--~~~~~~~l~ 161 (285)
+....-.-....+..|+.||+-+ ||. -+..|..+...+... .. .+... +...+ ...+...++
T Consensus 20 lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~ 99 (403)
T PF03209_consen 20 LVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLY 99 (403)
T ss_pred HHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHH
Confidence 34444455567889999999977 554 466777776654332 11 11221 11122 345667789
Q ss_pred HHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|+|.+..+|+..+++.|..|+++ +.+-++-..+.-+|+.++....+.+
T Consensus 100 G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 100 GLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred HhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997755 9999999999999999998886654
No 220
>KOG3762|consensus
Probab=97.73 E-value=0.00017 Score=70.84 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccc
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGL 175 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~al 175 (285)
-|.+....-.+++..=++++++..|+|+-+++.+|+....+=++.+.. -+|+|++..+-.+-|+..+.....+.++
T Consensus 408 fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~----L~n~W~vLPieilqgit~aliWaa~~sY 483 (618)
T KOG3762|consen 408 FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY----LQNPWMVLPIEILQGITHALIWAAIISY 483 (618)
T ss_pred eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH----hcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence 455566666788888899999999999999999998887776665444 2466999999999999999999999999
Q ss_pred eeeeccccc-hhHhHHHHH-----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 176 YGTLFRRNK-EAAFSNFRL-----WESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 176 i~~~fp~~~-~~afs~~~l-----~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
+....|++- .++-++.+. -.++|+.||-..-..+..++...+..+.+++.++.++.+.++.++++
T Consensus 484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~~ 554 (618)
T KOG3762|consen 484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLKRRG 554 (618)
T ss_pred HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 999998876 666664443 33455555555544566666677777777777777777776655443
No 221
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.73 E-value=0.0016 Score=63.95 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
+..++...+..+..++.+|+-|.++|+-|+||.++....+.....-..+.+. ++++++...+...+--++.+..+...|
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v-~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV-SPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888899999999999999999999998888776655444333333333 244445544544454567777788889
Q ss_pred cceeeeccccc
Q psy4795 174 GLYGTLFRRNK 184 (285)
Q Consensus 174 ali~~~fp~~~ 184 (285)
+++.++.+++.
T Consensus 149 a~LP~la~~~~ 159 (477)
T PF11700_consen 149 AYLPDLARPEP 159 (477)
T ss_pred HHhHhhcCCCh
Confidence 99999875543
No 222
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.0063 Score=57.44 Aligned_cols=183 Identities=15% Similarity=0.181 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHhhhHhhh-CchHHHHHHHHHHHHHHHHHHh--ccc-CCC--------------------------C
Q psy4795 23 ICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVV--WRP-HPN--------------------------N 72 (285)
Q Consensus 23 ~~~gi~~~~~a~~~G~l~~~~-G~~~~~~~g~~~~~~~l~~fl~--~e~-~~~--------------------------~ 72 (285)
.+.+++.++.+-++-.++++. ||+.-+...+...++.+++.+- +++ +++ |
T Consensus 141 ~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlq 220 (395)
T COG2807 141 TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQ 220 (395)
T ss_pred HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccCchhHHHHHHHHhh
Confidence 444555555666666677777 5765544444444443222211 111 011 1
Q ss_pred cchHHHHhhhhh-hhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795 73 PKIFFTISGLWG-AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNN 150 (285)
Q Consensus 73 p~l~~~~~~ft~-~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~ 150 (285)
..++|....+.| .|.++.++-.+.|.......+.+...++..-.+.+| -++|+..+....++.++...+.+ .| .+.
T Consensus 221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~-~P-~~~ 298 (395)
T COG2807 221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL-AP-GQL 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-hh-hhH
Confidence 133344333334 444455666789999999999999999988888885 56677777777778887776654 44 233
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHH---HHHHhhhhhH
Q psy4795 151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVI---AYAYSTHLCA 211 (285)
Q Consensus 151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~i---g~~~s~~l~~ 211 (285)
+++. .+++|+|.|...+-.-.++.+-. +|-.++-++..+.|.+|+.+ |+.+.+.+..
T Consensus 299 ~~lw---~~llG~G~G~~F~laL~li~~rs-~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 299 PILW---ALLLGLGQGGAFPLALTLILLRS-SDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHH---HHHHhCccchHHHHHHHHHHhhc-CChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 2222 47789888777766555555544 23367788999999999955 4555555544
No 223
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.72 E-value=8.3e-05 Score=71.03 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=94.1
Q ss_pred cchHHHHhhhhhhhhhhccch---------hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH
Q psy4795 73 PKIFFTISGLWGAYISCALGV---------SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV 143 (285)
Q Consensus 73 p~l~~~~~~ft~~Y~~~~lg~---------~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~ 143 (285)
|+-.-..+.+-|.|+++..+. +..|+...+.++..++-+|+-|.++|+.|+||....-.....+.....++
T Consensus 28 p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~ 107 (438)
T COG2270 28 PFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLW 107 (438)
T ss_pred ceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 333333445557787776554 56889999999999999999999999999988877666655555555666
Q ss_pred hCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHH
Q psy4795 144 WRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY 203 (285)
Q Consensus 144 ~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~ 203 (285)
+.|+.++++...+...+..++....+...++++.+..++++ +...+.-.-.-.+|+.+-.
T Consensus 108 ~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~l 168 (438)
T COG2270 108 FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILL 168 (438)
T ss_pred HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHH
Confidence 66644566666777888889999999999999999988765 5554433333344444433
No 224
>PTZ00207 hypothetical protein; Provisional
Probab=97.59 E-value=0.00035 Score=70.22 Aligned_cols=139 Identities=11% Similarity=0.084 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhc---------ccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhh
Q psy4795 99 VMICFGVVNAICSLLFGTLMK---------FIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQ 169 (285)
Q Consensus 99 v~~~~gv~~~i~s~l~G~LsD---------riGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~ 169 (285)
....+++++.+|-+..|.++. |+.|.-.+.+..+ ..++.+++++..|. ..+++..++.|++.|...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~----~~L~~~~~lvg~~~G~~~ 470 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPK----AALPLPYFIAAFANGFMA 470 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCc----cHhHHHHHHHHHHhhHhH
Confidence 568889999999999998872 2333333334444 44445555554441 356777889999999999
Q ss_pred cccccceeeeccccchhHhHHHHHHHHHHHHHH--HHHh----------------hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy4795 170 TQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIA--YAYS----------------THLCARMKLYVMGVVLVTGFCGYVI 231 (285)
Q Consensus 170 ~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig--~~~s----------------~~l~~~~~l~il~~~lv~~~v~~~~ 231 (285)
+.......++|.++.+.-+..-.+..-+|+.+- ..++ +.-|.+..+.++.++.+++++.=.+
T Consensus 471 ~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 471 ATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred HHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 999999999998554777666666666666542 3333 1135566688888999999998888
Q ss_pred HHHHHHHhHHh
Q psy4795 232 VEVRHMMKARR 242 (285)
Q Consensus 232 ~e~~~~~~~~~ 242 (285)
+.+|+||--||
T Consensus 551 l~~R~r~~y~~ 561 (591)
T PTZ00207 551 VHLQYRRLCLK 561 (591)
T ss_pred eeeehHHHHHH
Confidence 88888765544
No 225
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.0013 Score=61.95 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=109.9
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA 166 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g 166 (285)
+.+|+ +.+|+..+.-.++..+.+|+..++++|+|.++.+..++++..++... .+ ..+.+..+....+.|.|.+
T Consensus 40 ~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i----R~-~~~~~~L~~gt~l~G~gIa 114 (395)
T COG2807 40 QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI----RS-LGGLPLLFLGTLLAGAGIA 114 (395)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH----Hh-cccHHHHHHHHHHHHhhHH
Confidence 44566 57889999999999999999999999999999999998887776654 22 1245677888889999999
Q ss_pred hhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH---HH--HHHHHHHHHHHHHHHHHH
Q psy4795 167 VWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR---MK--LYVMGVVLVTGFCGYVIV 232 (285)
Q Consensus 167 ~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~---~~--l~il~~~lv~~~v~~~~~ 232 (285)
+.|.-.++.+=+-||++.+...++|....++|.+++...+.-+..+ |+ +..-....+++.+.|..-
T Consensus 115 v~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 115 VINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998887665432 33 444444445555555443
No 226
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.47 E-value=0.00013 Score=68.65 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHH-hCCCC----CChHHHHHHHHHHHHhhhhhhcccccceeeecccc---c-hhHhHHHHHHH
Q psy4795 125 PLMALGFIVHCCLIWILVV-WRPHP----NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN---K-EAAFSNFRLWE 195 (285)
Q Consensus 125 ~~i~~g~~l~~i~~~~l~~-~~p~~----~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~---~-~~afs~~~l~~ 195 (285)
+.+.+|.++..++.+++.. ..|.. .+.+.+++...+.++|.|.+.+...++.+|.++++ + ...|+.+++..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 5667777777777665322 22211 23467888888999999999999999999999764 2 78999999999
Q ss_pred HHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4795 196 SVGFVIAYAYSTHLC----ARMKLYVMGVVLVTGFCGYVIVEVRHMMK 239 (285)
Q Consensus 196 ~lG~~ig~~~s~~l~----~~~~l~il~~~lv~~~v~~~~~e~~~~~~ 239 (285)
|+|..++....+++. ..+-..+..+..+++++.|..-..+++++
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 999999999988887 33445555566677777666655444444
No 227
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.41 E-value=0.00036 Score=51.33 Aligned_cols=51 Identities=22% Similarity=0.422 Sum_probs=43.3
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV 133 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l 133 (285)
|.+.|..+ +|+ .++|.++.+.++...+++|+.|.++||.+|++.+..+..+
T Consensus 22 fl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 22 FLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred hhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 56777764 666 6899999999999999999999999999999988765543
No 228
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.021 Score=54.56 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=99.1
Q ss_pred hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795 83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL 160 (285)
Q Consensus 83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l 160 (285)
.+.|+.+..|. .+..+.+..+-++-++|-+++-++..|+...|.+.+..+...+..+...+ .++ .+......+
T Consensus 259 l~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l----~~g-~v~~~~l~~ 333 (422)
T COG0738 259 LVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL----IGG-VVALYALFL 333 (422)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH----hcC-hHHHHHHHH
Confidence 37787777776 35668888899999999999889999999999888777554444433333 123 333444777
Q ss_pred HHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 161 WGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 161 ~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e 233 (285)
.|+.++...|.+++.-.+..|++.+.+ |..=.+--+|.++-+.+-+.+..+. -++.....+.+.||..+-
T Consensus 334 ig~F~simfPTIfslal~~l~~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~--g~~~~~~~~pllc~lyV~ 403 (422)
T COG0738 334 IGLFNSIMFPTIFSLALKNLGEHTSVG-SGLLVMAIVGGAIIPPLQGVIADMF--GIQLTFLIVPLLCYLYVL 403 (422)
T ss_pred HHHHhHHHHHHHHHHHHhccCcccccc-ceeeeeheecchHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH
Confidence 899999999999999999998444444 3333444667777777777766543 333444467777777773
No 229
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.27 E-value=0.008 Score=57.78 Aligned_cols=120 Identities=12% Similarity=0.064 Sum_probs=83.2
Q ss_pred HHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhH
Q psy4795 109 ICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAA 187 (285)
Q Consensus 109 i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~a 187 (285)
..-+....+.|.+|.||+++++.+...+...++.+ ..+.+..-+.-+..|+..+. ....++++-...|+++ ..+
T Consensus 56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~----~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~v 130 (412)
T PF01770_consen 56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF----GTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKV 130 (412)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHH
Confidence 34445567999999999999999988887766555 35667777778899988876 5566677777777776 778
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 188 FSNFRLWESVGFVIAYAYSTHL------CARMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 188 fs~~~l~~~lG~~ig~~~s~~l------~~~~~l~il~~~lv~~~v~~~~~e 233 (285)
-|-.|-..-+|..++..+|-.+ ......++-++...++++.-+...
T Consensus 131 ts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 131 TSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8788888888877777766543 223334555555555544444433
No 230
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.22 E-value=0.0028 Score=49.16 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHhhh--------hhhhhhhccch
Q psy4795 22 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL--------WGAYISCALGV 93 (285)
Q Consensus 22 l~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~~~~f--------t~~Y~~~~lg~ 93 (285)
+..++++..+.++..|.+.+++|||..+..+.....+........++. ...........+ ...+..+....
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI-TVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 345677888899999999999999766665555554443322222111 111111111111 12333333322
Q ss_pred ----hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh
Q psy4795 94 ----SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144 (285)
Q Consensus 94 ----~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~ 144 (285)
...+.......++..++..+.|.+.|+.|.+...........+..+.....
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 235577778889999999999999999887776666555555544444333
No 231
>KOG0637|consensus
Probab=97.21 E-value=0.00013 Score=70.26 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=84.8
Q ss_pred ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhHHHHHH-HHHHHHHHHHHHhCC--------CCCC-hHH
Q psy4795 90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPLMALGF-IVHCCLIWILVVWRP--------HPNN-PKI 153 (285)
Q Consensus 90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~i~~g~-~l~~i~~~~l~~~~p--------~~~~-~~~ 153 (285)
.+|+ ++.+.+-.+-++...+.+|+-|..||| +|||+..+... ...+++.++ +.+.+ +... ...
T Consensus 61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~L-ig~aaDig~~lgd~~~~~~~~ 139 (498)
T KOG0637|consen 61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFL-IGYAADIGLLLGDNERKPVKP 139 (498)
T ss_pred HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhh-hhhHhhhhHHhcCCcccccch
Confidence 3666 467778889999999999999999995 99988766544 444444442 22211 1111 111
Q ss_pred HHHHHH-----HHHHhhhhhhcccccceeeec-cccchh-HhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 154 FFTISG-----LWGVGDAVWQTQVNGLYGTLF-RRNKEA-AFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 154 ~~~~~~-----l~Gig~g~~~~~~~ali~~~f-p~~~~~-afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
..+..+ ++=+.+-..|++.-+++.|+. ++++.+ |.+.+.++..+|-++|++.++++..+
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 222233 333566788999999999997 455544 99999999999999999999875443
No 232
>KOG0254|consensus
Probab=97.14 E-value=0.0062 Score=59.96 Aligned_cols=95 Identities=20% Similarity=0.104 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh---CCC-----CCChHHHHHHHHHHHHhhhhh
Q psy4795 97 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW---RPH-----PNNPKIFFTISGLWGVGDAVW 168 (285)
Q Consensus 97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~---~p~-----~~~~~~~~~~~~l~Gig~g~~ 168 (285)
.....+.++.+.++..+++.+.||+|||++++.|...+.++.+.+... ... ....++..+...+.-...+..
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g 411 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG 411 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 567788999999999999999999999999999998877776643221 111 111222222222222233333
Q ss_pred hcccc-cceeeeccccc-hhHhHHH
Q psy4795 169 QTQVN-GLYGTLFRRNK-EAAFSNF 191 (285)
Q Consensus 169 ~~~~~-ali~~~fp~~~-~~afs~~ 191 (285)
..+.+ .+..|.||.+. ..+.++-
T Consensus 412 ~g~v~w~~~sEifp~~~r~~~~s~~ 436 (513)
T KOG0254|consen 412 WGPVPWVIVSEIFPLRLRSKGASLA 436 (513)
T ss_pred cccchhhhhhccCcHhHHhhhHHHH
Confidence 33343 46688999876 5555543
No 233
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.13 E-value=0.0085 Score=57.98 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=86.6
Q ss_pred hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhccc-----CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795 84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFI-----GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT 156 (285)
Q Consensus 84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~ 156 (285)
..|+.+.+|++ +.........+-+.+ -|+.|.++|.+ .||+-++++.++..+....+.......++.....+
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 35677888883 444555555555554 56679999975 36777777877776555444443322344455555
Q ss_pred HHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
..++..+|.+......-+++.|...++. +.--|....++++|..++..+++.+..+
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~ 150 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS 150 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 6667778888888888888888764433 4555677889999999999888876543
No 234
>KOG1330|consensus
Probab=97.12 E-value=0.0019 Score=62.59 Aligned_cols=137 Identities=12% Similarity=0.013 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccc----CC---hhHHHHHHHHH-HHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh-h
Q psy4795 97 GYVMICFGVVNAICSLLFGTLMKFI----GR---SPLMALGFIVH-CCLIWILVVWRPHPNNPKIFFTISGLWGVGDA-V 167 (285)
Q Consensus 97 G~v~~~~gv~~~i~s~l~G~LsDri----Gr---k~~i~~g~~l~-~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g-~ 167 (285)
.+...++..+..+|..++|.++||+ .| .+.-.+...+- ..+...++.+....+.........+++|.... .
T Consensus 286 ~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~ 365 (493)
T KOG1330|consen 286 LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWF 365 (493)
T ss_pred hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 3567778888899999999999983 32 22222222211 11222233332223333445555677775443 4
Q ss_pred hhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH---------------HHHHHHHHHHHHHHHHHHH
Q psy4795 168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA---------------RMKLYVMGVVLVTGFCGYV 230 (285)
Q Consensus 168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~---------------~~~l~il~~~lv~~~v~~~ 230 (285)
....++-+..+.+|+++ ..|++..+....+ |.+-+.-+-+.+.. ....+....++..+...+.
T Consensus 366 ~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~~~~~~~~~~~s~~~~a~~l~~a~~~~~ 445 (493)
T KOG1330|consen 366 NWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKPAGGIDSVLQTSLRLCAALLAKALIWSI 445 (493)
T ss_pred ccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCccccccccccchhhhhHHHHHHHHHHhh
Confidence 45566777788887766 8999988766654 22222211112211 1346666777777777776
Q ss_pred HHH
Q psy4795 231 IVE 233 (285)
Q Consensus 231 ~~e 233 (285)
-.-
T Consensus 446 ~~~ 448 (493)
T KOG1330|consen 446 GSP 448 (493)
T ss_pred ccc
Confidence 633
No 235
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.10 E-value=0.17 Score=50.05 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCC--h----hH-HHHHHHHHHHHHHHHHHh--CCCC---CChHHHHHHHHHHHH
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGR--S----PL-MALGFIVHCCLIWILVVW--RPHP---NNPKIFFTISGLWGV 163 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGr--k----~~-i~~g~~l~~i~~~~l~~~--~p~~---~~~~~~~~~~~l~Gi 163 (285)
..+.....++.-++.+|+.+++=.|.+| | +. +.+|+++..++++.+... ..++ -++++.....++.++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 5577888999888889988877555522 1 11 567777777777655321 1111 356667777889999
Q ss_pred hhhhhhcccccceeeeccccc-hhHhHHHHHH-HHHHHHHHHHHhhh
Q psy4795 164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLW-ESVGFVIAYAYSTH 208 (285)
Q Consensus 164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~-~~lG~~ig~~~s~~ 208 (285)
|.=+..|.-.++++++.|++. +.-.+.+.+. ..+|..++-.++..
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 8888888663 35766666554443
No 236
>KOG2816|consensus
Probab=97.07 E-value=0.0062 Score=59.58 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeecc
Q psy4795 102 CFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFR 181 (285)
Q Consensus 102 ~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp 181 (285)
..++...+.+++-|.++||+|||..+....+...+..+.+.+.. |++++...+.| +.+......+++++|...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~------~~~~~~~~l~g-~~~~~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG------YWFFLLLGLSG-GFSAIFSVGFAYVADISS 142 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH------HHHhhhccccc-chhhhhhhhhhheeeccc
Confidence 45788899999999999999999999888776665554443311 33333233333 445556677889999875
Q ss_pred cc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 182 RN-KEAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 182 ~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++ |...+++.+-....+.+++++.++++.-
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 54 4788888888888889999998887643
No 237
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.05 E-value=0.0068 Score=50.68 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeec
Q psy4795 101 ICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF 180 (285)
Q Consensus 101 ~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~f 180 (285)
.+.-....+++++.+.+.+++|.|..+++|.+...+-.... + . ++.+..+...++.|++.+...+....++.+.-
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~-~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-F-Y---PNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-H-h---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 33444556666777788999999999999998877544332 2 2 24578888899999999999999999988876
Q ss_pred cccc-hhHhHHHHHHHHHHHHHHHHHh
Q psy4795 181 RRNK-EAAFSNFRLWESVGFVIAYAYS 206 (285)
Q Consensus 181 p~~~-~~afs~~~l~~~lG~~ig~~~s 206 (285)
+++. ++-.+++--..+.+..+|-.+.
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5544 7777776666666776665543
No 238
>KOG0253|consensus
Probab=97.05 E-value=0.0016 Score=61.84 Aligned_cols=126 Identities=10% Similarity=0.113 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeee
Q psy4795 100 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTL 179 (285)
Q Consensus 100 ~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~ 179 (285)
.....+.+.-|.+++|.+.||+|||+.+....++..++.+++..-. +++.... ..+..-...+......|.+-.|.
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~--~rn~~tv--llf~arafisg~fqvaYvYtPEV 462 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK--TRNAYTV--LLFTARAFISGAFQVAYVYTPEV 462 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--CcchhHH--HHHHHHHHHhchheEEEEecCcc
Confidence 4556778888999999999999999999988888777666654432 2332221 12222223333345678999999
Q ss_pred ccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHH
Q psy4795 180 FRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR--MKLYVMGVVLVTGFCGY 229 (285)
Q Consensus 180 fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~--~~l~il~~~lv~~~v~~ 229 (285)
||+.. +.+.+.-.-+.-+|..+...+.-....+ .-+.+.-++.+++.++-
T Consensus 463 yPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIav 515 (528)
T KOG0253|consen 463 YPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAV 515 (528)
T ss_pred cchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHh
Confidence 99865 7777766666667776666655222211 12344444444444443
No 239
>KOG2816|consensus
Probab=96.98 E-value=0.078 Score=51.95 Aligned_cols=193 Identities=15% Similarity=0.197 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHH-HHHhc-c----cCCC----------Cc-------
Q psy4795 17 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW-ILVVW-R----PHPN----------NP------- 73 (285)
Q Consensus 17 ~~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~-~fl~~-e----~~~~----------~p------- 73 (285)
..|.+..+++.+..++..+.+++.+..|...++....+..++.++ ..++. | |..+ +.
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVAD 228 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhh
Confidence 467888888899999999999999998886555555555555422 22222 2 1111 00
Q ss_pred -------------chHHHHh---hhh----------hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhh-hhhcccCCh
Q psy4795 74 -------------KIFFTIS---GLW----------GAYISCALGV--SSVGYVMICFGVVNAICSLLFG-TLMKFIGRS 124 (285)
Q Consensus 74 -------------~l~~~~~---~ft----------~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G-~LsDriGrk 124 (285)
.+..... .+. +.|+...+|. ++.+......+....+++.+.. .+...+|-|
T Consensus 229 ~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~ 308 (463)
T KOG2816|consen 229 AFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK 308 (463)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000 000 1233333444 5778777888888888888766 677889999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccc-cchhHhHHHHHHHHHHHHHHH
Q psy4795 125 PLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAY 203 (285)
Q Consensus 125 ~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~ 203 (285)
+++.+|+....+......+. ++.|..+.... .........+...++.....++ +++.++++....+++...++.
T Consensus 309 ~~i~lGl~~~~~~~~~~af~----~~~w~~~~~~v-~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 309 RLISLGLLSEFLQLLLFAFA----TETWMMFAAGV-VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred hHhhHHHHHHHHHHHHHHHh----ccchhhhHHHH-HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence 99999999988887765552 33355555333 3445566778888888888755 459999999999999888887
Q ss_pred HHhhhhhHHHH
Q psy4795 204 AYSTHLCARMK 214 (285)
Q Consensus 204 ~~s~~l~~~~~ 214 (285)
..=+.+...++
T Consensus 384 ~~~~~i~~~t~ 394 (463)
T KOG2816|consen 384 ALYGNIFALTL 394 (463)
T ss_pred HHHHHHHHHHH
Confidence 76555544433
No 240
>KOG2563|consensus
Probab=96.90 E-value=0.0073 Score=58.43 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
..|++....-++.++++.+.|.+.||....+... .......++.+.+....-...+.++++....++|.+.....|.-+
T Consensus 302 ~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ 381 (480)
T KOG2563|consen 302 FAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGF 381 (480)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcce
Confidence 6788888888899999999999999988755533 333333333222222222234557778888899998888888778
Q ss_pred cceeee-ccccchhHhH-HHHHHHHHHHHHHHHHhhhhhH
Q psy4795 174 GLYGTL-FRRNKEAAFS-NFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 174 ali~~~-fp~~~~~afs-~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.+-.|. ||...+...+ +.-+.|.-|..+-++.+.....
T Consensus 382 ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 382 ELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred eeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence 887776 6776655555 5555666677777666655433
No 241
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.77 E-value=0.003 Score=58.24 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 149 NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 149 ~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.+++.+.+..++.|.|.++.|+..|.++.++.|+|+ .+..+..+.++++|..+|+.+.+.+-
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456778888999999999999999999999988766 88899999999999999999988654
No 242
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.77 E-value=0.026 Score=54.80 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh----CCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW----RPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~----~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
++....-+.+.+..+.--.+..|+..+.-+..++++..+.++....+ .+.....+..++..++.|+++|..|+...
T Consensus 49 ~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~ 128 (437)
T TIGR00939 49 YYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLF 128 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccch
Confidence 44455556666666666666677776545555655444443332221 12122355666778889999999999888
Q ss_pred cceeeeccccc
Q psy4795 174 GLYGTLFRRNK 184 (285)
Q Consensus 174 ali~~~fp~~~ 184 (285)
++.+ .+|++.
T Consensus 129 gla~-~fp~~~ 138 (437)
T TIGR00939 129 GLAG-VFPSTY 138 (437)
T ss_pred hhcc-cCCHHH
Confidence 8876 566554
No 243
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.72 E-value=8.9e-06 Score=77.78 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---HhCCCCC---ChHHHHHHHHHHHH-hhhhhhcc
Q psy4795 99 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV---VWRPHPN---NPKIFFTISGLWGV-GDAVWQTQ 171 (285)
Q Consensus 99 v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~---~~~p~~~---~~~~~~~~~~l~Gi-g~g~~~~~ 171 (285)
.....++...++.+++..+.||+|||++++.+.....++...+. .+.++.+ +... .+...++.. ....+.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~~~~~~g~~~~ 369 (451)
T PF00083_consen 291 ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS-IVFLALFFAFFSLGWGPL 369 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ceeeeecccccccccccc
Confidence 44556677778888888999999999999999887776665542 3333221 2222 222222222 22245666
Q ss_pred cccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 172 VNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 172 ~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
...+..|+||++. ..+.++......++..++..+.+.+...
T Consensus 370 ~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 411 (451)
T PF00083_consen 370 PWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN 411 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 6788899999876 8888888888888888777666555433
No 244
>KOG2615|consensus
Probab=96.65 E-value=0.031 Score=53.32 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=81.3
Q ss_pred hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795 89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG 164 (285)
Q Consensus 89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig 164 (285)
..+|. .++|.+....|+.+.+.+..-.+..||.. .+.....+..+ ..+.+........+..++....+..++
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~----~vP~~llls~~~~~~~l~~~s~l~sf~ 365 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLL----IVPAFLLLSLARTPVVLYLGSTLKSFS 365 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHH----HHHHHHHHhccccchhhhHHHHHHHHH
Confidence 34555 36777777777777777776666666644 23333332222 222222222233446778888899999
Q ss_pred hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
.+...|....++....|++. +++.++.+-..+++=++|++.++.
T Consensus 366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~ 410 (451)
T KOG2615|consen 366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV 410 (451)
T ss_pred HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence 99999999999999998766 999999999999999999999855
No 245
>KOG2563|consensus
Probab=96.59 E-value=0.038 Score=53.60 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH-HHHhCCC-CCChH--HHHHHHHHHHHhhhhhh
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI-LVVWRPH-PNNPK--IFFTISGLWGVGDAVWQ 169 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~-l~~~~p~-~~~~~--~~~~~~~l~Gig~g~~~ 169 (285)
+.+-+..+++.++.+..++.+-|+.||+|-|....++.+++.++... +.-..|. ++.++ +......+.+...-.+.
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 45668999999999999999999999999999999999999888765 3322221 13333 33333334333332222
Q ss_pred cccccceee-ecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 170 TQVNGLYGT-LFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 170 ~~~~ali~~-~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
. .++-+++ .||++ +..|-++--+...+|.++|+.+.+.+..+
T Consensus 159 ~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 159 G-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred c-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 1 2333444 47655 48999999999999999999999887543
No 246
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.52 E-value=0.05 Score=55.31 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=45.1
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHH-HHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGV-VNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWI 140 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv-~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~ 140 (285)
|.|.|++..+|. .++++++....+ +.+++.+++|+++||++ .|+.+.++.++..+..+.
T Consensus 352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 458899988888 467877776665 66899999999999988 456777777766666443
No 247
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.49 E-value=0.067 Score=52.53 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=63.2
Q ss_pred HHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH-HHhCCCCC-----------------------------ChHHHHH
Q psy4795 107 NAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL-VVWRPHPN-----------------------------NPKIFFT 156 (285)
Q Consensus 107 ~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l-~~~~p~~~-----------------------------~~~~~~~ 156 (285)
.++..++.+++++|++|++++-.-.......+.+. +...|.++ ....+++
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 34447889999999999998776444333333221 11112111 1124455
Q ss_pred HHHHHHHhhhhhhc-ccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 157 ISGLWGVGDAVWQT-QVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 157 ~~~l~Gig~g~~~~-~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
..-+||.- .-+ ..-+...|.+..++ .+-++.+...-|+|..+|..+..+++
T Consensus 137 ~~elw~~~---vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 137 MAELWGSV---VLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555521 111 33467778887776 89999999999999999887776765
No 248
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.45 E-value=0.00054 Score=68.20 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=2.9
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH----HhCCC-----C--------
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV----VWRPH-----P-------- 148 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~----~~~p~-----~-------- 148 (285)
++..++ +++|++...+-+++.+..++..+..+|-.|-+.+-.|.++.+++.++.. ...+. .
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 445666 5899999999999999999999999998888888888888777654321 11110 0
Q ss_pred -----------------------------CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHH
Q psy4795 149 -----------------------------NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVG 198 (285)
Q Consensus 149 -----------------------------~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG 198 (285)
..++++++..++.|+|.+-.++--.+++=|..++++ ..-.++......+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 013556677889999999999999999999998776 77788999999999
Q ss_pred HHHHHHHhhh
Q psy4795 199 FVIAYAYSTH 208 (285)
Q Consensus 199 ~~ig~~~s~~ 208 (285)
-++||.+++.
T Consensus 190 Pa~Gf~lg~~ 199 (539)
T PF03137_consen 190 PALGFLLGSF 199 (539)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 249
>KOG0255|consensus
Probab=96.16 E-value=0.075 Score=52.13 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccccee
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYG 177 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~ 177 (285)
......+..+.......+.+.||+|||.....+..+..++.+...+. +.....++..+...+-..+.+.-....+....
T Consensus 354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (521)
T KOG0255|consen 354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWL-PDDLGGWLHWILPLLGKFFIGSAFNLIFLYSA 432 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555777777778899999999999999998888777665443 32332112222222222333333344478888
Q ss_pred eeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 178 TLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 178 ~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+++|+.. ..+.+..+.+..+|..++..+.....
T Consensus 433 el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 433 ELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999877 88999999999999988888775443
No 250
>KOG0252|consensus
Probab=96.11 E-value=0.0092 Score=58.00 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=78.0
Q ss_pred HHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHH-Hhhhhhhcccccceeeeccccc-hh
Q psy4795 110 CSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH-PNNPKIFFTISGLWG-VGDAVWQTQVNGLYGTLFRRNK-EA 186 (285)
Q Consensus 110 ~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~-~~~~~~~~~~~~l~G-ig~g~~~~~~~ali~~~fp~~~-~~ 186 (285)
+-.++..+.|++|||++.+.|.+++.+..+.+-. .++ ..+..-++++..+.. +++-.=++....+-+|.||.+. ++
T Consensus 364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~-~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t 442 (538)
T KOG0252|consen 364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAG-PYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST 442 (538)
T ss_pred ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcC-CcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence 5556778999999999999999988876654322 111 111111222222211 2222233444556678899886 88
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHHHHHHHHHHHH
Q psy4795 187 AFSNFRLWESVGFVIAYAYSTHLCA---------RMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 187 afs~~~l~~~lG~~ig~~~s~~l~~---------~~~l~il~~~lv~~~v~~~~~e 233 (285)
..++....--.|..+|...-..+.. +.-++++..+.+++.+..+.++
T Consensus 443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred hhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 8889888888888888766555444 4557777777777776666666
No 251
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.08 E-value=0.096 Score=50.70 Aligned_cols=119 Identities=11% Similarity=0.075 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH-H---hCCC--CCChHHHHHHHHHHHHhhhh
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-V---WRPH--PNNPKIFFTISGLWGVGDAV 167 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~-~---~~p~--~~~~~~~~~~~~l~Gig~g~ 167 (285)
...|.+..+..++..++..+..+...+..-|+++....++..+..+.-. + |... -++.+..+.-.++..+...+
T Consensus 255 ~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i 334 (433)
T PF03092_consen 255 SFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMI 334 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHH
Confidence 4577777888888889988888877777778888777766554433211 1 1000 01123334445666777777
Q ss_pred hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
-.-+...++.++-|++. ++.|++.--..|+|..++..++..+...
T Consensus 335 ~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 335 AFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL 380 (433)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999987 9999999999999999999888887544
No 252
>KOG4686|consensus
Probab=95.94 E-value=0.014 Score=53.87 Aligned_cols=147 Identities=12% Similarity=0.028 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccce
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLY 176 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali 176 (285)
++-..++.=|++.+.++|++.|| +|-|.-.++-.+...++.+.... ..-.+..|......+++|+|.-..-...|.+.
T Consensus 83 LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~-Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~ya 161 (459)
T KOG4686|consen 83 LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAA-GGISHAFWTMLAGRFLFGIGGESLAVAQNKYA 161 (459)
T ss_pred eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhheeeccCchhhhhhhccee
Confidence 45566777888999999999996 55443322222222222222111 11124567888889999998877777788888
Q ss_pred eeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4795 177 GTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM--------------KLYVMGVVLVTGFCGYVIVEVRHMMKAR 241 (285)
Q Consensus 177 ~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~--------------~l~il~~~lv~~~v~~~~~e~~~~~~~~ 241 (285)
...|..+. .-+|++..-.--+|+.+-+.+-+.++... .+.+-...+..+++|-...-+..+|.+|
T Consensus 162 v~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAer 241 (459)
T KOG4686|consen 162 VYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAER 241 (459)
T ss_pred EEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 88886544 88898887777788776655555544322 1222223456677777777777777766
Q ss_pred hhhh
Q psy4795 242 RQKR 245 (285)
Q Consensus 242 ~~~~ 245 (285)
++..
T Consensus 242 ilh~ 245 (459)
T KOG4686|consen 242 ILHL 245 (459)
T ss_pred HHhh
Confidence 5444
No 253
>KOG1237|consensus
Probab=95.73 E-value=0.048 Score=54.80 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=103.4
Q ss_pred hhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHH------HhCCC------C-
Q psy4795 85 AYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCLIWILV------VWRPH------P- 148 (285)
Q Consensus 85 ~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsD-riGrk~~i~~g~~l~~i~~~~l~------~~~p~------~- 148 (285)
.|++..++.. .+.-....++-.......+++.++| .+||.+.+.++.++...+.+.+- ...|. .
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~ 141 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG 141 (571)
T ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence 3444555553 3345566677777788889999999 59999999999888777643211 11110 1
Q ss_pred ---C-----ChHHHHHHHHHHHHhhhhhhcccccceeeeccc----cc---hhHhHHHHHHHHHHHHHHHHHhhhhh--H
Q psy4795 149 ---N-----NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR----NK---EAAFSNFRLWESVGFVIAYAYSTHLC--A 211 (285)
Q Consensus 149 ---~-----~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~----~~---~~afs~~~l~~~lG~~ig~~~s~~l~--~ 211 (285)
+ ....++...-+..+|.|...+...+.=+|.|++ ++ ..-|.-+.+-++.|..++...-.+.. .
T Consensus 142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~ 221 (571)
T KOG1237|consen 142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV 221 (571)
T ss_pred CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 0 123556666777789999999999999999972 11 35677888888888888877666552 2
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 212 RM--KLYVMGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 212 ~~--~l~il~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
.| ..-+..+...++.+.|+.-...++.++
T Consensus 222 ~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~ 252 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAILIFLPGFPFYRYKK 252 (571)
T ss_pred cceeeccHHHHHHHHHHHHHHcCceeEEeeC
Confidence 22 255566666777777776665554443
No 254
>KOG1479|consensus
Probab=95.42 E-value=0.32 Score=46.70 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHH--HHHHh--C--CCCCChHHHHHHHHHHHHhhhhhhcc
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW--ILVVW--R--PHPNNPKIFFTISGLWGVGDAVWQTQ 171 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~--~l~~~--~--p~~~~~~~~~~~~~l~Gig~g~~~~~ 171 (285)
..+.+.-+...+...+--++.-|. +..+..+..+..+.++ +.+.+ . .....++...++..+.+.++|..|+.
T Consensus 60 ~~~~~a~i~~ll~~~~n~~~~~~~--~~~~~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs 137 (406)
T KOG1479|consen 60 SYTLAAQIPLLLFNLLNAFLNTRL--RTRVGYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGS 137 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccc
Confidence 444455555566666666666662 2222222222222222 22222 1 11234556677788999999999987
Q ss_pred cccceeeeccccc-hhHhHHHHHHHHHHHHHHH---HHhhhhhHHH--HHHHHHHHHHHHHHHHHHHH
Q psy4795 172 VNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY---AYSTHLCARM--KLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 172 ~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~---~~s~~l~~~~--~l~il~~~lv~~~v~~~~~e 233 (285)
.+...+. +|++. ....+..++..-+-+..-. +...--.... .+.+-.+++++..++|....
T Consensus 138 ~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~ 204 (406)
T KOG1479|consen 138 LYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLP 204 (406)
T ss_pred hhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhh
Confidence 7776655 55554 4333333333222222111 1111111222 23444555677778887443
No 255
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.34 E-value=0.13 Score=50.50 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=85.4
Q ss_pred H-HHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHHhCC--C---------------CCChHHHHHH
Q psy4795 97 G-YVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRP--H---------------PNNPKIFFTI 157 (285)
Q Consensus 97 G-~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~l~~~~p--~---------------~~~~~~~~~~ 157 (285)
| +.+.++.+.+.+.+++--++.+|+|+ |.+-.++.++.++++....+... + ....+..++.
T Consensus 307 G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (477)
T TIGR01301 307 GAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV 386 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence 5 78889999999999999999999995 66667787776666655443221 0 0113667777
Q ss_pred HHHHHHhhhhhhcccccceeeeccc--cc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRR--NK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~--~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
..+.|+.-+..++.-++++++..|+ ++ |.-.++.|.+.-+...+....++.
T Consensus 387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999883 33 888899999988888777765544
No 256
>KOG3098|consensus
Probab=95.15 E-value=0.14 Score=49.99 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=79.9
Q ss_pred HHHH-HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 95 SVGY-VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 95 ~~G~-v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
..|+ ...+......+++++++.+.|++|.|..+.+|...+.......+. | |.+.+++..+++|+|.|+..+...
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--~---N~y~~yfssallG~Gaallw~GqG 124 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--P---NSYYLYFSSALLGFGAALLWTGQG 124 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--c---chHHHHHHHHHhhhhHHheecccc
Confidence 4553 356666778889999999999999999999999988876655443 2 348888999999999999888888
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHH
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIA 202 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig 202 (285)
.++.+..++++ ++--|+.=..-+.++.+|
T Consensus 125 ~ylt~~st~~tie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 125 GYLTSNSTRETIERNISIFWAIGQSSLIIG 154 (461)
T ss_pred eehhhcCChhhHHHHHHHHHHHHHHHHHhh
Confidence 99999887665 776666655556666666
No 257
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.54 E-value=1.1 Score=43.69 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=92.6
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH--HHHhCCCCC-ChH---HHH
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI--LVVWRPHPN-NPK---IFF 155 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~--l~~~~p~~~-~~~---~~~ 155 (285)
..|+... |+ ..+|..-....+.++.+..++.++.+|+|..+.=..+...+.++..+ ..+|.|.++ +.. .++
T Consensus 282 t~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~ 360 (432)
T PF06963_consen 282 TAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLL 360 (432)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Confidence 4444433 55 56788888888899999999999999999999988999888877654 456666443 111 111
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGV 220 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~ 220 (285)
....+-=+|-=.+--...-++-|..|+++ +..+++-+-+||+--.+-+...-.++..-++..+..
T Consensus 361 ~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~lv~ 426 (432)
T PF06963_consen 361 GGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGWLVL 426 (432)
T ss_pred HHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcChHHH
Confidence 11111113333334444556667788755 899999999999999988888877776666555444
No 258
>PRK03612 spermidine synthase; Provisional
Probab=94.51 E-value=0.8 Score=45.56 Aligned_cols=118 Identities=9% Similarity=-0.032 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHH-HHHHHHHHhCCC-CCChHHHHHHHHHHHHhhhhhhcc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHC-CLIWILVVWRPH-PNNPKIFFTISGLWGVGDAVWQTQ 171 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~-i~~~~l~~~~p~-~~~~~~~~~~~~l~Gig~g~~~~~ 171 (285)
..+.+..++-.+..+|+.++|++.++.-|+.... ++..+.. ++..++....+. .......+...++.++..|+..|-
T Consensus 51 ~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl 130 (521)
T PRK03612 51 QFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPL 130 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888764422222111 1111111 111111111110 111122233344556666666554
Q ss_pred cccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 172 VNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 172 ~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
...+..+...++.+...+--+.+..+|..+|....+++-.+
T Consensus 131 ~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp 171 (521)
T PRK03612 131 LMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLP 171 (521)
T ss_pred HHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence 44444332222346677788888999999998888776553
No 259
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.27 E-value=3.9 Score=39.77 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL 137 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~ 137 (285)
++....+-++..++.++.-|+..||..|.+.+....+.+-++
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 444455566777888888999999999999988877654433
No 260
>KOG3626|consensus
Probab=93.76 E-value=0.058 Score=55.37 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh----CCC-----------------------
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW----RPH----------------------- 147 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~----~p~----------------------- 147 (285)
+.|++...+-+++.+...+-.+..-|.-|.+.+-.|.++++++.++..+- .|.
T Consensus 133 ~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~ 212 (735)
T KOG3626|consen 133 QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCC 212 (735)
T ss_pred cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhc
Confidence 46666666666666666666666666666666666666665554332210 000
Q ss_pred ----------C----------CChH-HHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795 148 ----------P----------NNPK-IFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY 205 (285)
Q Consensus 148 ----------~----------~~~~-~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~ 205 (285)
+ +.+| ++++..++.|+|....+|.-.+++=|...+++ ..-+++....+-+|=++||.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfll 292 (735)
T KOG3626|consen 213 NKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLL 292 (735)
T ss_pred cCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHH
Confidence 0 0133 56677889999999999988888888886655 778889999999999999999
Q ss_pred hhhh
Q psy4795 206 STHL 209 (285)
Q Consensus 206 s~~l 209 (285)
++++
T Consensus 293 gS~~ 296 (735)
T KOG3626|consen 293 GSFC 296 (735)
T ss_pred HHHH
Confidence 9874
No 261
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=93.61 E-value=6.7 Score=37.14 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=111.2
Q ss_pred ceeeecccchHHHHHHHHHHHHHHHHHHHhhhHhhhCch-HHHHHHHHHHHHHHHHHHhcccCCCCcch--HHHHhh---
Q psy4795 8 YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRS-PLMALGFIVHCCLIWILVVWRPHPNNPKI--FFTISG--- 81 (285)
Q Consensus 8 ~~~c~~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~~-~~~~~g~~~~~~~l~~fl~~e~~~~~p~l--~~~~~~--- 81 (285)
|-++++.-+.++.+..+--.++.+++...|.+++++||| ..+..++...+..+ ++..++.+.+ .-+...
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-----~k~~~~~~~L~~GRvlgGiaT 135 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-----TKHSSNYPVLLLGRVLGGIAT 135 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-----HHhccccHHHHHHHHHHHHHH
Confidence 556667777888888888888999999999999999995 66555555544432 2333333322 222211
Q ss_pred ------hhhhhhhh--ccch--hHHHH---HHH--HHHHHHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHH-HHH
Q psy4795 82 ------LWGAYISC--ALGV--SSVGY---VMI--CFGVVNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWI-LVV 143 (285)
Q Consensus 82 ------ft~~Y~~~--~lg~--~~~G~---v~~--~~gv~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~-l~~ 143 (285)
|=.-++.+ ..|. ++.+- .+. ..++..+..++++-.+.|+.| ++.....+..+..++... ...
T Consensus 136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~ 215 (354)
T PF05631_consen 136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT 215 (354)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 11222222 2343 23231 122 234444555555556666654 466666666665555544 445
Q ss_pred hCCCCCC------h-------HHHHH---HHHHHHHhhhhhhcccccceeeeccc----c--c--hhHhHHHHHHHHHHH
Q psy4795 144 WRPHPNN------P-------KIFFT---ISGLWGVGDAVWQTQVNGLYGTLFRR----N--K--EAAFSNFRLWESVGF 199 (285)
Q Consensus 144 ~~p~~~~------~-------~~~~~---~~~l~Gig~g~~~~~~~ali~~~fp~----~--~--~~afs~~~l~~~lG~ 199 (285)
|..+..+ . +..+. -..++|+.++++...++..+-...|. + . |..|+.+-..+-+|+
T Consensus 216 W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS 295 (354)
T PF05631_consen 216 WPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGS 295 (354)
T ss_pred ccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHH
Confidence 6654321 0 01111 13467888888888888777665552 1 1 667777777777777
Q ss_pred HHH-HHHhhhh
Q psy4795 200 VIA-YAYSTHL 209 (285)
Q Consensus 200 ~ig-~~~s~~l 209 (285)
.+- -..+..+
T Consensus 296 ~lf~~l~s~~~ 306 (354)
T PF05631_consen 296 SLFSRLLSKSL 306 (354)
T ss_pred HHHHHHHhCCC
Confidence 666 3444443
No 262
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=93.42 E-value=0.14 Score=50.41 Aligned_cols=97 Identities=10% Similarity=0.061 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHH--HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGF--IVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQV 172 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~--~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~ 172 (285)
.-|.+-.+..+..++.++..|++-.++.|.-.+.++. ++.....+++. ..++.|+.++..++++..-....|..
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~----~t~~Iw~~Y~~yvlf~~~y~flitia 374 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS----QSHDIWVLYVTYVLFRGIYQFLVPIA 374 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh----cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777888889999999976665533343333 33333332222 25789999999999999988888888
Q ss_pred ccceeeeccccc-hhHhHHHHHHH
Q psy4795 173 NGLYGTLFRRNK-EAAFSNFRLWE 195 (285)
Q Consensus 173 ~ali~~~fp~~~-~~afs~~~l~~ 195 (285)
++-++....+++ +-.|+++.+.-
T Consensus 375 ~~~iA~~L~~~~~aLvFGiNtfvA 398 (511)
T TIGR00806 375 TFQIASSLSKELCALVFGINTFVA 398 (511)
T ss_pred HHHHHHHhcccceEEEEecHHHHH
Confidence 888888887887 99999888763
No 263
>KOG3762|consensus
Probab=93.37 E-value=0.088 Score=52.26 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=48.4
Q ss_pred hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHH-HHHHHHHHHHHHhCCCCC
Q psy4795 84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGF-IVHCCLIWILVVWRPHPN 149 (285)
Q Consensus 84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~-~l~~i~~~~l~~~~p~~~ 149 (285)
+.|. ..+|+ .+.|.++..-+++.+++.|+.|.++||+-+++..++|. +....+.+++.+..|.+.
T Consensus 35 ~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~P~~~ 102 (618)
T KOG3762|consen 35 AVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVPPVDK 102 (618)
T ss_pred HHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeeccCccc
Confidence 3443 34676 69999999999999999999999999998877666554 455555555555555443
No 264
>COG3619 Predicted membrane protein [Function unknown]
Probab=92.62 E-value=7 Score=34.66 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCh--h-HHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccc
Q psy4795 99 VMICFGVVNAICSLLFGTLMKFIGRS--P-LMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNG 174 (285)
Q Consensus 99 v~~~~gv~~~i~s~l~G~LsDriGrk--~-~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~a 174 (285)
.....++...+.+.+.+.+..|..+| . ... ...++........-++.+..++........+..|+-++.+......
T Consensus 59 ~~~~~pii~Fv~Gv~~~~~~~r~~~~~~~~~l~~~~~ll~~~v~~~~~~~p~~~~~~~~~il~~f~mg~Qnasf~k~~g~ 138 (226)
T COG3619 59 VLLLLPILAFVLGVAAAELISRRATRSFIPVLLLVSLLLALIALLALGFIPESSPDFVAVILVAFAMGIQNASFRKVGGA 138 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33444444444445555544443333 2 222 2222222222233344434445555566666677655555444333
Q ss_pred ceeeec-----------------cccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 175 LYGTLF-----------------RRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRH 236 (285)
Q Consensus 175 li~~~f-----------------p~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~ 236 (285)
-++..+ ++|+ ..--+..++.--++++.|...|+.++.....+.+.+....-...+..+....
T Consensus 139 ~~~~t~~TGnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i~~~~~~~~~~~ 218 (226)
T COG3619 139 PYGTTYVTGNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALILAVYLLALFDL 218 (226)
T ss_pred cccchhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 333222 2222 1222345555567888888889888877665555555544444444444443
Q ss_pred H
Q psy4795 237 M 237 (285)
Q Consensus 237 ~ 237 (285)
+
T Consensus 219 ~ 219 (226)
T COG3619 219 R 219 (226)
T ss_pred h
Confidence 3
No 265
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=91.32 E-value=0.73 Score=45.52 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=21.3
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHHhh
Q psy4795 180 FRRNKEAAFSNFRLWESVGFVIAYAYST 207 (285)
Q Consensus 180 fp~~~~~afs~~~l~~~lG~~ig~~~s~ 207 (285)
-|+|.+.|...+..-||+|..+++..--
T Consensus 148 s~~n~~~ASTcqtvG~~~Gyfls~tvFl 175 (544)
T PF13000_consen 148 SPENVGYASTCQTVGQTAGYFLSFTVFL 175 (544)
T ss_pred ChhhcchHHHHHHhHhhhhHHHHHHHHH
Confidence 4667788888888888888888776543
No 266
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=91.24 E-value=17 Score=36.07 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCCh---h----HHHHHHHHHHHHHHHHHHh---CC---CCCChHHHHHHHHHHH
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGRS---P----LMALGFIVHCCLIWILVVW---RP---HPNNPKIFFTISGLWG 162 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk---~----~i~~g~~l~~i~~~~l~~~---~p---~~~~~~~~~~~~~l~G 162 (285)
.++.-...++.-++.+|+.-++--|.+|+ + -+-+|..+...+++.+... .. ..-++++.....++.+
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 45666677777777777766665553332 1 1345556666655543322 21 1245677788899999
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhh
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYST 207 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~ 207 (285)
+|.=+..+.-.++...+.|+.- +.+.+++-+....|..++-.+++
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 9999999999999999999876 89999999999999998877776
No 267
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=90.97 E-value=4.8 Score=39.87 Aligned_cols=101 Identities=16% Similarity=0.326 Sum_probs=59.5
Q ss_pred HHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH-HHhCCCC-----------------------------CChHHHHHH
Q psy4795 108 AICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL-VVWRPHP-----------------------------NNPKIFFTI 157 (285)
Q Consensus 108 ~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l-~~~~p~~-----------------------------~~~~~~~~~ 157 (285)
++...+..++++|++|+++.-.........+.+. +..-|+. ++..++++.
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~ 152 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM 152 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4555567889999999887665443333322221 1111221 112345666
Q ss_pred HHHHH-Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 158 SGLWG-VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 158 ~~l~G-ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.=+|| +..+. ...++..+.++.++ .+-++.+...-|+|..++-.+...++.
T Consensus 153 aElwgsvvlSl---LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 153 AELWGSVVLSL---LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 22231 12355667776665 788999999999998888766666555
No 268
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=90.89 E-value=2.2 Score=41.49 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCh-hHHHHHHHHHHHHHHHHHH-hCC-C------CCChHHHHHHHHHHHHhhhhh
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKFIGRS-PLMALGFIVHCCLIWILVV-WRP-H------PNNPKIFFTISGLWGVGDAVW 168 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDriGrk-~~i~~g~~l~~i~~~~l~~-~~p-~------~~~~~~~~~~~~l~Gig~g~~ 168 (285)
....++.++..+|-.+..+..- -++| +.+.+..++-.+.+.++++ ... + -++-+..++..+++|+.+|..
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~ 389 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL 389 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence 6777888999998886654321 1222 1333444444443322222 211 0 023466667799999999998
Q ss_pred hcccccceeeeccc-cchhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 169 QTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 169 ~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
.+.......+..++ +++.|..+..++-++|.++|..++-.
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777654 45899999999999999988877643
No 269
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=90.88 E-value=1.9 Score=37.29 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhHH
Q psy4795 227 CGYVIVEVRHMMKAR 241 (285)
Q Consensus 227 v~~~~~e~~~~~~~~ 241 (285)
.+..+.|+..++..+
T Consensus 152 aG~~YAe~~~~~~~~ 166 (196)
T PF08229_consen 152 AGQWYAERKDAKELE 166 (196)
T ss_pred hhHHHHhhhhHHHHH
Confidence 344446655554443
No 270
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=90.71 E-value=2.1 Score=41.17 Aligned_cols=81 Identities=6% Similarity=0.032 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccce
Q psy4795 97 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLY 176 (285)
Q Consensus 97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali 176 (285)
|.+..+-.+=..+.-++.-+..+|+.-+.-+.....+..++++...+ .++.++-++...+.+++.|.-....-++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~----~~~v~~~l~Gv~las~ssg~GE~tfL~l- 136 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF----SPSVWVRLLGVVLASLSSGLGEVTFLSL- 136 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee----ccchhHHHHHHHHHhhhhhhhHHHHHHH-
Confidence 33444433444444455556777876555455555666666655433 3455665665666666666554444343
Q ss_pred eeeccc
Q psy4795 177 GTLFRR 182 (285)
Q Consensus 177 ~~~fp~ 182 (285)
...||+
T Consensus 137 t~~y~~ 142 (402)
T PF02487_consen 137 THFYGK 142 (402)
T ss_pred HHhcCc
Confidence 334544
No 271
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=90.48 E-value=9.6 Score=35.81 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHH
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAA 254 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~ 254 (285)
+.....+.+.-.+.|..+.+...-.+||..-+.-++|+++
T Consensus 230 l~~sl~l~~~~~l~~~l~~Rwl~v~~RRLA~~Ra~~kR~~ 269 (340)
T PF12794_consen 230 LILSLYLLLGWLLVYQLILRWLLVARRRLAYERAKEKRAE 269 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666655555555433332445554
No 272
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=89.75 E-value=2.8 Score=31.34 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH
Q psy4795 91 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV 143 (285)
Q Consensus 91 lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~ 143 (285)
+..++.|++-...-++..+|++...++.+|.++++.+..+.+...+....+-+
T Consensus 24 ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 24 LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34478999999999999999999999999988888888888887776665544
No 273
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=88.34 E-value=28 Score=34.37 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc--hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK--EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~--~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
+...+.|+.....+..--+.+.+.+|++. .+-++.+..+.|+...+...+++.
T Consensus 271 ~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~ 325 (472)
T TIGR00769 271 LLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGN 325 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777788888887643 555567777777777555444433
No 274
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=87.58 E-value=1.1 Score=42.19 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.0
Q ss_pred HHHHHHHhhhhhhhccc
Q psy4795 105 VVNAICSLLFGTLMKFI 121 (285)
Q Consensus 105 v~~~i~s~l~G~LsDri 121 (285)
+..++.-.+.|+++.|.
T Consensus 6 i~~i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444455555543
No 275
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=87.50 E-value=29 Score=33.72 Aligned_cols=15 Identities=13% Similarity=0.490 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhHhhhCc
Q psy4795 28 VNAICSLLFGTLMKFIGR 45 (285)
Q Consensus 28 ~~~~~a~~~G~l~~~~G~ 45 (285)
...+.++..|. |+|=
T Consensus 7 ~~~~~~~~~g~---~~~~ 21 (433)
T PRK09412 7 IIVLLAIFLGA---RLGG 21 (433)
T ss_pred HHHHHHHHHhH---hhhH
Confidence 34456666676 5543
No 276
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=86.50 E-value=0.88 Score=38.26 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 213 MKLYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 213 ~~l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
--+|++.++..+.++.|.+=.+|.+|++||
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~r~~~rk 125 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRLRRRNRK 125 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 346777777777777777766777775554
No 277
>KOG2325|consensus
Probab=86.41 E-value=1.2 Score=43.83 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=51.7
Q ss_pred HHHHHHhhhhhhcccccceeeec-cccchhHhHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLF-RRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR---MKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~f-p~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~---~~l~il~~~lv~~~v~~~~~e 233 (285)
..++|++.-..++...+++++.. |++++.+-+.+....+.+..+|..+++..... ...+.+....++..+.+..+-
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888888888887 55668888899999999999998887775432 224444444444444444333
No 278
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=85.23 E-value=14 Score=35.18 Aligned_cols=19 Identities=5% Similarity=0.002 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4795 214 KLYVMGVVLVTGFCGYVIV 232 (285)
Q Consensus 214 ~l~il~~~lv~~~v~~~~~ 232 (285)
+..+-..+.++..++....
T Consensus 302 ~~~i~~~la~i~~i~l~~~ 320 (374)
T PF01528_consen 302 HTGIAINLAVIAIICLIMM 320 (374)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 279
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=85.09 E-value=0.27 Score=45.30 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK 184 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~ 184 (285)
.++.|+++|..|+...++.+. +|++.
T Consensus 4 v~~~~~~~~~~q~s~~glas~-~p~~y 29 (309)
T PF01733_consen 4 VALIGFANAVLQSSLFGLASL-FPPKY 29 (309)
T ss_dssp ---------------------------
T ss_pred EEEEHhhhHHHhccHHHHHhc-CCHHH
Confidence 456788999999998888875 66544
No 280
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=84.68 E-value=1.7 Score=37.45 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhHH
Q psy4795 227 CGYVIVEVRHMMKAR 241 (285)
Q Consensus 227 v~~~~~e~~~~~~~~ 241 (285)
.+..+.|++.++..+
T Consensus 152 aG~wYAer~~~~~~~ 166 (196)
T smart00786 152 AGLWYAERKDAKQKE 166 (196)
T ss_pred hhHHHHHHhHHHHHH
Confidence 444555555544433
No 281
>PF13974 YebO: YebO-like protein
Probab=84.57 E-value=1 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh---hhhhcCChHHHH
Q psy4795 217 VMGVVLVTGFCGYVIVEVRHMMKARR---QKRLAEDPKAAA 254 (285)
Q Consensus 217 il~~~lv~~~v~~~~~e~~~~~~~~~---~~~~~~~~~~~~ 254 (285)
+.+.+++++++.++++-+-..|.... .++..+.+|+++
T Consensus 3 ~~~~~~lv~livWFFVnRaSvRANEQI~LL~~ileqQKrQn 43 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVNRASVRANEQIELLEEILEQQKRQN 43 (80)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888887644433322 333443455553
No 282
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=83.89 E-value=44 Score=32.51 Aligned_cols=27 Identities=7% Similarity=-0.150 Sum_probs=11.5
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK 184 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~ 184 (285)
.....++...-..+...........+.
T Consensus 110 PI~i~la~~lG~d~i~~~ai~~~aa~i 136 (430)
T TIGR00770 110 PVIAEVAKEQGIKPERPLSLAVVSSQI 136 (430)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 444455554444333333333333333
No 283
>KOG1479|consensus
Probab=83.86 E-value=12 Score=36.17 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=71.1
Q ss_pred HHHHHHHH-HHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--h----CCCCCChHHHHHHHHHHHHhhhh
Q psy4795 95 SVGYVMIC-FGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--W----RPHPNNPKIFFTISGLWGVGDAV 167 (285)
Q Consensus 95 ~~G~v~~~-~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~----~p~~~~~~~~~~~~~l~Gig~g~ 167 (285)
..-..+.+ +-+...+|.+...++-++= ||.+.+ ..++-.+ +++++. . .+.-.+-++..+...++|+.+|-
T Consensus 283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i-~v~lR~l-fiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 283 YALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTI-PVLLRLL-FIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred hHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehH-HHHHHHH-HHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 44555555 8899999988877776653 333332 2333333 334333 1 11113346666778888999888
Q ss_pred hhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhh
Q psy4795 168 WQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYST 207 (285)
Q Consensus 168 ~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~ 207 (285)
..+-...+-...+|++ ++.|..+..++-..|.+.|.+++-
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8766666666666544 488888999999999999887763
No 284
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=82.54 E-value=14 Score=34.74 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=12.6
Q ss_pred hhhccch-hHHHHHHHHHHHHHHHHH
Q psy4795 87 ISCALGV-SSVGYVMICFGVVNAICS 111 (285)
Q Consensus 87 ~~~~lg~-~~~G~v~~~~gv~~~i~s 111 (285)
+...... +..|....+.|++..+.+
T Consensus 127 L~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 127 LKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHhhhhHHHHHHHHHHHhhhhheeee
Confidence 3334444 456666666665554433
No 285
>PTZ00370 STEVOR; Provisional
Probab=82.14 E-value=2.8 Score=38.25 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 197 VGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 197 lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
.|.+.+.+.+.+.+...-..+++++.|+-.+.|+|+.+|.++.=|++.+
T Consensus 243 agtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 243 AGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred cchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 3456667777777777778888888999999999998777666555544
No 286
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=82.04 E-value=2.6 Score=28.75 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHHH
Q psy4795 216 YVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAA 257 (285)
Q Consensus 216 ~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
+.+.+++++.+-+|+.--+|.+||.+|- =+|-+++|.
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~G~rd-----YEKY~~LAL 41 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKKGERD-----YEKYANLAL 41 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccC-----HHHHhhhhc
Confidence 3455666677777777767766666432 245666664
No 287
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=80.60 E-value=1.4 Score=39.95 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=3.6
Q ss_pred hhhhhcc
Q psy4795 114 FGTLMKF 120 (285)
Q Consensus 114 ~G~LsDr 120 (285)
.-+.+||
T Consensus 120 ~~h~adk 126 (265)
T TIGR00822 120 FQHAADK 126 (265)
T ss_pred HHHHHHH
Confidence 3455565
No 288
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=80.54 E-value=0.43 Score=43.94 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH--H-hCCCC-------CChHHHHHHHHHHHHhhhhh
Q psy4795 99 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV--V-WRPHP-------NNPKIFFTISGLWGVGDAVW 168 (285)
Q Consensus 99 v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~--~-~~p~~-------~~~~~~~~~~~l~Gig~g~~ 168 (285)
...++.++..+|..+.++.--+..+++.+.+..+.-.+. ++++ . ..|.+ ++-+..++..+++|+.+|..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 345788888888887775421111233333333443332 2222 1 12210 12355667788999999998
Q ss_pred hcccccceeeeccc-cchhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 169 QTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 169 ~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
.+.......+..++ +++.+..+..++-++|.++|..+|-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777754 45899999999999999999877643
No 289
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=80.52 E-value=8.9 Score=30.99 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4795 216 YVMGVVLVTGFCGYVIVEVRHMMK 239 (285)
Q Consensus 216 ~il~~~lv~~~v~~~~~e~~~~~~ 239 (285)
.+...++++.-+.|..+.....++
T Consensus 89 ~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333444444556666555544
No 290
>KOG4332|consensus
Probab=80.32 E-value=17 Score=33.83 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHHHHHHHHHHHHHH---HHHhCCCCCChHHHHHHHHHHHHhhhhhhc
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMALGFIVHCCLIWI---LVVWRPHPNNPKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~~g~~l~~i~~~~---l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~ 170 (285)
-|++...+.+.+++|+-+..++..|- .-++.+.+...+....+.+ .....|...++..-++...++-.+-|++.|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 46777778888888888888877652 2345555555554444332 223345444555556666677788899999
Q ss_pred ccccceeeeccccc-hhHhHHHHHHHHHHHHHHH
Q psy4795 171 QVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY 203 (285)
Q Consensus 171 ~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~ 203 (285)
.+.-+=.+..|++. ......+|.=-|+=.+++-
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvL 397 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL 397 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh
Confidence 88888778888764 6666677766676666654
No 291
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=80.10 E-value=43 Score=33.27 Aligned_cols=102 Identities=13% Similarity=0.310 Sum_probs=58.2
Q ss_pred HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH--HHHh------CCC-----------C------------CChHHH
Q psy4795 106 VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI--LVVW------RPH-----------P------------NNPKIF 154 (285)
Q Consensus 106 ~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~--l~~~------~p~-----------~------------~~~~~~ 154 (285)
+.++..++.+++.++..|+++.-.-.......+++ ...+ +|+ + ++...+
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 56777788899999999888865544333333222 2222 121 0 123345
Q ss_pred HHHHHHHHH-hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 155 FTISGLWGV-GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 155 ~~~~~l~Gi-g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+++.=+||- --+ --......+....++ .+=++.+++..|++..++-.+...+.
T Consensus 154 Yi~aELWgslV~S---~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 154 YIMAELWGSLVLS---LLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666662 111 112234456665555 67788888888888777666555543
No 292
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=80.03 E-value=5.2 Score=36.11 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 191 FRLWESVGFVIAYAYSTH---------LCARMKLYVMGVVLVTGFCGYVIVEVRH 236 (285)
Q Consensus 191 ~~l~~~lG~~ig~~~s~~---------l~~~~~l~il~~~lv~~~v~~~~~e~~~ 236 (285)
.-+|.+.....|.+.|-+ ....+.-|+-+++.+++.+.|..++-..
T Consensus 85 ~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 85 MLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 345566666777776643 2345668888889999999998875444
No 293
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=78.04 E-value=1.9 Score=33.38 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHh
Q psy4795 187 AFSNFRLWESVGFVIAYAYS 206 (285)
Q Consensus 187 afs~~~l~~~lG~~ig~~~s 206 (285)
.+...+.|||+|..++|.+.
T Consensus 42 ~y~~sh~WRN~GIli~f~i~ 61 (103)
T PF06422_consen 42 GYSYSHRWRNFGILIAFWIF 61 (103)
T ss_pred cccccchhhhHHHHHHHHHH
Confidence 44477899999999998654
No 294
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=77.22 E-value=6.5 Score=37.92 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH--HHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI--LVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~--l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
--+...++-+|..++.-- ..+. |+.|-.++.+-.+++.+.++. .+.+. ++.|++++..+.-|+..|..+....
T Consensus 283 Y~~Y~~~YQ~GVFISRSS-~~~~-rir~lwils~LQ~~nl~~~~l~s~~~fi---psi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 283 YRWYQLLYQLGVFISRSS-LPFF-RIRRLWILSLLQVINLVFLLLQSWYRFI---PSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHhhhhcc-eeee-ehhhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345677777776665321 1222 443322222222333333222 12222 3578888888899988888887777
Q ss_pred cceeeeccc-cchhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 174 GLYGTLFRR-NKEAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 174 ali~~~fp~-~~~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
..+.+..|+ +||-+.+.-.+..++|..++-.++-.
T Consensus 358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 778877754 55999999999999998888777644
No 295
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=77.20 E-value=7.2 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4795 213 MKLYVMGVVLVTGFCGYVI 231 (285)
Q Consensus 213 ~~l~il~~~lv~~~v~~~~ 231 (285)
|...|..++.+++...|+-
T Consensus 4 wlt~iFsvvIil~If~~iG 22 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIG 22 (49)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443
No 296
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=76.32 E-value=50 Score=28.58 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=20.0
Q ss_pred ccccchhHhH-HHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795 180 FRRNKEAAFS-NFRLWESVGFVIAYAYSTHLCARM 213 (285)
Q Consensus 180 fp~~~~~afs-~~~l~~~lG~~ig~~~s~~l~~~~ 213 (285)
.|+++..+.+ ...+..++...+.+...+.+....
T Consensus 161 ~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~ 195 (240)
T PF01925_consen 161 LDPKKARATSAFFFFFSSVAALISFLILGDVDWPM 195 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 3444433333 566677777777777766665543
No 297
>KOG3810|consensus
Probab=74.35 E-value=3.8 Score=39.05 Aligned_cols=96 Identities=19% Similarity=0.089 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCCh--hHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLMKFIGRS--PLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN 173 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk--~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ 173 (285)
-|.+-.+..+..++.+++.|++.-++.|. -++..+...++.+.+. ..+.++.|+.++...++...-...-+...
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~----m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~ 348 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFI----MAQTQHIWVCYAGYVLFRVIYQLTITIAT 348 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhh----hhcccceehhhhhHHHHHhhHhhhhhHHH
Confidence 45566677778888888999987665554 3344455555544433 33367788889888888776666666666
Q ss_pred cceeeeccccc-hhHhHHHHHHH
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWE 195 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~ 195 (285)
.-++....+|+ +-.|+++.+.-
T Consensus 349 ~~iA~nL~~e~~gLvFGiNTFvA 371 (433)
T KOG3810|consen 349 FQIARNLSSELFGLVFGINTFVA 371 (433)
T ss_pred HHHHHhhhhhhheeeeehHHHHH
Confidence 66666666666 88999887763
No 298
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=74.32 E-value=32 Score=32.95 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 155 FTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 155 ~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e 233 (285)
.+..++.|++.|.+......++-..++... +. |+-+.+.+++...+-.+...+++--++=++.-++.|.+
T Consensus 7 l~~ll~agi~~g~~~~~qqgyVlI~~~~~~ie~---------Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~ 77 (400)
T COG3071 7 LFVLLLAGIGVGLAIAGQQGYVLIQTDNYNIEM---------SLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFS 77 (400)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEecceeeee---------eHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334566677788887777777766654433 22 22222223333333333345555555666667899998
Q ss_pred HHHHHhHHhhhh
Q psy4795 234 VRHMMKARRQKR 245 (285)
Q Consensus 234 ~~~~~~~~~~~~ 245 (285)
.+.++|.++.+.
T Consensus 78 ~rKrrra~~~~~ 89 (400)
T COG3071 78 RRKRRRARKALN 89 (400)
T ss_pred HHHHHHHHHHHH
Confidence 777777666444
No 299
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=73.80 E-value=12 Score=28.04 Aligned_cols=21 Identities=5% Similarity=-0.383 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy4795 220 VVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 220 ~~lv~~~v~~~~~e~~~~~~~ 240 (285)
++..+..+.++++.|+.+|-+
T Consensus 9 ~~~~v~~~i~~y~~~k~~ka~ 29 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKKAK 29 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444333
No 300
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=73.80 E-value=5.2 Score=36.55 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 198 GFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 198 G~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
|.+.+.+.+.+.+...-..+++++.|+-.+.|+|+.+|.++.=|+
T Consensus 248 gtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 248 ERAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred chHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 445566666677777777888888888999999988765554433
No 301
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=72.76 E-value=9.4 Score=37.46 Aligned_cols=15 Identities=13% Similarity=-0.026 Sum_probs=8.5
Q ss_pred hhhhhcccCChhHHH
Q psy4795 114 FGTLMKFIGRSPLMA 128 (285)
Q Consensus 114 ~G~LsDriGrk~~i~ 128 (285)
-..+.+|+++|+...
T Consensus 104 v~~l~k~l~~~~~~~ 118 (465)
T PF03606_consen 104 VNLLIKPLKGKKNPL 118 (465)
T ss_pred HHHHHHHhcCCcchh
Confidence 346667776654433
No 302
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=72.60 E-value=6 Score=27.60 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=4.8
Q ss_pred cCCccccccc
Q psy4795 267 EETDDERDDI 276 (285)
Q Consensus 267 ~~~~~~~~~~ 276 (285)
+++||+||..
T Consensus 47 ~l~Dd~q~~~ 56 (60)
T COG4736 47 PLNDDAQDAA 56 (60)
T ss_pred CCCcchhhhh
Confidence 4445555543
No 303
>KOG3832|consensus
Probab=71.74 E-value=11 Score=33.11 Aligned_cols=21 Identities=33% Similarity=0.590 Sum_probs=14.4
Q ss_pred hcCccCCcccccccCcccccc
Q psy4795 263 AQVVEETDDERDDIDDEIIVT 283 (285)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ 283 (285)
++++||+|||.+.-|||.++.
T Consensus 81 ~~keeeddd~stasd~dvli~ 101 (319)
T KOG3832|consen 81 KKKEEEDDDESTASDDDVLIA 101 (319)
T ss_pred hhhhhccccccccCCCcEEEe
Confidence 445566777778888887663
No 304
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=71.65 E-value=10 Score=36.72 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHH--HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFI--VHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQV 172 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~--l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~ 172 (285)
.-|.+-.+..+...++++..|++..++.+...+.++.. +.+.+.+.+.. .++.|+.++...+.+..--...|..
T Consensus 286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~----t~~Iwv~Y~~yIif~~~y~fliTiA 361 (412)
T PF01770_consen 286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF----TGNIWVCYAGYIIFRSLYMFLITIA 361 (412)
T ss_pred cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888889999999999999777777555554443 33333333333 5678998988888887777777776
Q ss_pred ccceeeeccccc-hhHhHHHHHH
Q psy4795 173 NGLYGTLFRRNK-EAAFSNFRLW 194 (285)
Q Consensus 173 ~ali~~~fp~~~-~~afs~~~l~ 194 (285)
..-++....+++ +-.|+++.+.
T Consensus 362 ~~qIA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 362 SFQIAKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHHHHHhccccceeeeeeeHHHH
Confidence 666777776777 8899988765
No 305
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=69.20 E-value=23 Score=28.14 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
-|-...+.+.+++.|-.=.++.++..++.+.
T Consensus 70 nwavgsF~l~s~~~we~Cr~~r~~~~~~~~~ 100 (118)
T PF12597_consen 70 NWAVGSFFLGSLGSWEYCRYNRRKERQQMKR 100 (118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666655554444444433
No 306
>PF12832 MFS_1_like: MFS_1 like family
Probab=68.64 E-value=18 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=32.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-hHHHHHH
Q psy4795 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALG 52 (285)
Q Consensus 13 ~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~~~~~~g 52 (285)
+.-+.+|.+....-+...+++++.|.+++++|+ +..+..+
T Consensus 32 l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 32 LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 344489999999999999999999999999999 4554443
No 307
>PF14002 YniB: YniB-like protein
Probab=68.44 E-value=8.1 Score=32.32 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=14.9
Q ss_pred cCccCCcccccccCccccccc
Q psy4795 264 QVVEETDDERDDIDDEIIVTH 284 (285)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~ 284 (285)
+.+.++..+++|+|++|+|-|
T Consensus 116 ~akG~~g~treqlE~~i~vPr 136 (166)
T PF14002_consen 116 QAKGSEGRTREQLEERIVVPR 136 (166)
T ss_pred HhcCCccccHHHHHhcccCCC
Confidence 334555668889999998754
No 308
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=67.84 E-value=8.3 Score=34.96 Aligned_cols=9 Identities=11% Similarity=-0.178 Sum_probs=5.4
Q ss_pred hhhhhhhcc
Q psy4795 112 LLFGTLMKF 120 (285)
Q Consensus 112 ~l~G~LsDr 120 (285)
..+-+.+||
T Consensus 118 ~~f~h~aDk 126 (265)
T COG3715 118 VGFVHRADK 126 (265)
T ss_pred HHHHHHHHH
Confidence 345567776
No 309
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=65.09 E-value=9.3 Score=34.76 Aligned_cols=7 Identities=29% Similarity=0.021 Sum_probs=3.6
Q ss_pred hhhhhcc
Q psy4795 114 FGTLMKF 120 (285)
Q Consensus 114 ~G~LsDr 120 (285)
.-+.+||
T Consensus 121 ~~~~adk 127 (267)
T PRK09757 121 FMTKADK 127 (267)
T ss_pred HHHHHHH
Confidence 3455565
No 310
>PRK01637 hypothetical protein; Reviewed
Probab=63.80 E-value=83 Score=28.57 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=5.3
Q ss_pred hcCccCCcccc
Q psy4795 263 AQVVEETDDER 273 (285)
Q Consensus 263 ~~~~~~~~~~~ 273 (285)
+.|+||+||.|
T Consensus 275 ~~~~~~~~~~~ 285 (286)
T PRK01637 275 AAEQEEDDEPK 285 (286)
T ss_pred ccccccccccC
Confidence 44555555443
No 311
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=63.23 E-value=96 Score=26.51 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHHHhhhhhh---hcccCChhHHHHHHHHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHHhhhhhhc
Q psy4795 108 AICSLLFGTL---MKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN----PKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 108 ~i~s~l~G~L---sDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~----~~~~~~~~~l~Gig~g~~~~ 170 (285)
++|+.+++.+ .+|..+++.......+..+.........+..++ ........+..|+-++.+..
T Consensus 60 ~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~lafamg~Qn~~~~~ 129 (209)
T PF06912_consen 60 ILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLIAALLPPAFPPHGHRILAIFLLAFAMGMQNAAFRR 129 (209)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 234445555555555555554443333332333 45556667777777666653
No 312
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=62.91 E-value=29 Score=31.31 Aligned_cols=7 Identities=14% Similarity=0.045 Sum_probs=2.6
Q ss_pred HHHHHhh
Q psy4795 159 GLWGVGD 165 (285)
Q Consensus 159 ~l~Gig~ 165 (285)
.++++|-
T Consensus 161 ~~l~fGl 167 (258)
T PRK10921 161 LFMAFGV 167 (258)
T ss_pred HHHHHHH
Confidence 3333333
No 313
>PRK10621 hypothetical protein; Provisional
Probab=62.77 E-value=1.1e+02 Score=27.23 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhhhcccCChhH
Q psy4795 104 GVVNAICSLLFGTLMKFIGRSPL 126 (285)
Q Consensus 104 gv~~~i~s~l~G~LsDriGrk~~ 126 (285)
.++..++++++.++.++...+.+
T Consensus 84 ~~~~l~Ga~~G~~l~~~l~~~~l 106 (266)
T PRK10621 84 IAMTFVGSMSGALLVQYVQADIL 106 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHH
Confidence 34566777777778877776544
No 314
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=62.46 E-value=19 Score=30.03 Aligned_cols=82 Identities=7% Similarity=0.085 Sum_probs=44.6
Q ss_pred hhcccCChhHHHHHHH-HHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhH
Q psy4795 117 LMKFIGRSPLMALGFI-VHCCLIWILVVWRPHP-----NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFS 189 (285)
Q Consensus 117 LsDriGrk~~i~~g~~-l~~i~~~~l~~~~p~~-----~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs 189 (285)
.+||+-||..+..|.- ...++.+..+++.-.. +++..+.....++|+|- -+..|.+++..-.+++ |...+
T Consensus 57 Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG 133 (153)
T PF11947_consen 57 VSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLG 133 (153)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCccc
Confidence 5677776666655542 2333333333332211 22233334444555543 2334666666666665 99999
Q ss_pred HHHHHHHHHHHH
Q psy4795 190 NFRLWESVGFVI 201 (285)
Q Consensus 190 ~~~l~~~lG~~i 201 (285)
.-.+-.|++-..
T Consensus 134 ~~e~~~N~~r~~ 145 (153)
T PF11947_consen 134 WEEFKRNWGRMW 145 (153)
T ss_pred HHHHHHhHHHHH
Confidence 988888887544
No 315
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=62.29 E-value=1.3e+02 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhcccccceeeeccccch
Q psy4795 153 IFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKE 185 (285)
Q Consensus 153 ~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~ 185 (285)
.+++..=+.|-|.|.--.|....+++..+.+.+
T Consensus 153 i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~ 185 (414)
T PF03390_consen 153 IFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAE 185 (414)
T ss_pred HHHHHhhhcCCCccccHhHHHHHHHHHhCCCHH
Confidence 334444444544444444455555555544443
No 316
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=62.18 E-value=1.6e+02 Score=28.81 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhHhhhCc
Q psy4795 27 VVNAICSLLFGTLMKFIGR 45 (285)
Q Consensus 27 i~~~~~a~~~G~l~~~~G~ 45 (285)
+...+.++..|. |+|=
T Consensus 6 ~~~~l~~i~~g~---r~gg 21 (443)
T PRK12489 6 FLILLICLFLGA---RYGG 21 (443)
T ss_pred HHHHHHHHHHhh---hhhh
Confidence 445667777787 6664
No 317
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=60.50 E-value=82 Score=25.10 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVEV 234 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~ 234 (285)
.+-+++++.+-|..+..
T Consensus 70 vinFlIiA~vvF~~vk~ 86 (119)
T PRK13954 70 VIDFIIIAFALFIFVKI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456667777776654
No 318
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=59.40 E-value=15 Score=27.36 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy4795 216 YVMGVVLVTGFCGYV 230 (285)
Q Consensus 216 ~il~~~lv~~~v~~~ 230 (285)
++-+.+++++...+.
T Consensus 7 l~~l~lliig~~~~v 21 (92)
T PF13038_consen 7 LVGLILLIIGGFLFV 21 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 319
>KOG3574|consensus
Probab=59.30 E-value=17 Score=35.30 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=44.7
Q ss_pred hhhcccCChhHHHHHHHHHHHHHHHHHHhCCCC------CChHHHH--HHHHHHHHhhhhhhcccccceeeec-cccchh
Q psy4795 116 TLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP------NNPKIFF--TISGLWGVGDAVWQTQVNGLYGTLF-RRNKEA 186 (285)
Q Consensus 116 ~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~------~~~~~~~--~~~~l~Gig~g~~~~~~~ali~~~f-p~~~~~ 186 (285)
..++|+||||.-+.=.-.....+.+++.+.+++ ..+...+ ...+++-+.-+.--.+.-+.--.+. |+|.+.
T Consensus 90 ~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgy 169 (510)
T KOG3574|consen 90 VYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGY 169 (510)
T ss_pred HHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCc
Confidence 445599999874432222222223333333321 1111111 2233444443333333333333333 556688
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q psy4795 187 AFSNFRLWESVGFVIAYAY 205 (285)
Q Consensus 187 afs~~~l~~~lG~~ig~~~ 205 (285)
|...+...|++|+..|+.+
T Consensus 170 aST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 170 ASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred hhHHHHHHHhhhHHhhcce
Confidence 9888888888888888654
No 320
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=58.94 E-value=79 Score=26.09 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 214 KLYVMGVVLVTGFCGYVIVEVRHMM 238 (285)
Q Consensus 214 ~l~il~~~lv~~~v~~~~~e~~~~~ 238 (285)
-+.+...++-..+.++.+..--++.
T Consensus 74 lLii~fl~lTaPVaah~iaRAayr~ 98 (145)
T PRK12586 74 LLSLVFINLTSPVGMHLIARAAYRN 98 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444455566665544433
No 321
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=56.36 E-value=23 Score=26.07 Aligned_cols=25 Identities=4% Similarity=0.073 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhc
Q psy4795 223 VTGFCGYVIVEVRHMMKARRQKRLA 247 (285)
Q Consensus 223 v~~~v~~~~~e~~~~~~~~~~~~~~ 247 (285)
++..+.|++.-+..+|++|++++..
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~~~m~ 34 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEHQEML 34 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred HHHHHHhhheecHHHHHHHHHHHHH
Confidence 3444445544444444444444433
No 322
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=56.32 E-value=2e+02 Score=27.90 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=7.6
Q ss_pred hhCchHHHHH--HHHHHHH
Q psy4795 42 FIGRSPLMAL--GFIVHCC 58 (285)
Q Consensus 42 ~~G~~~~~~~--g~~~~~~ 58 (285)
.-+||.+.-+ |+.+.++
T Consensus 6 ~d~rr~~~~lkvglal~lv 24 (406)
T PF11744_consen 6 DDPRRVIHSLKVGLALTLV 24 (406)
T ss_pred cCcchhhhhHHHHHHHHHH
Confidence 4455544443 4444433
No 323
>PRK14397 membrane protein; Provisional
Probab=53.93 E-value=63 Score=28.58 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy4795 21 VMICFGVVNAICSLLFGT 38 (285)
Q Consensus 21 il~~~gi~~~~~a~~~G~ 38 (285)
++++|-+++.-++.+.++
T Consensus 7 ~~~~YLlGSip~~~~i~k 24 (222)
T PRK14397 7 IATAYVMGSIPFGLVFAR 24 (222)
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 444555555555555554
No 324
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=53.57 E-value=20 Score=26.59 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhhh
Q psy4795 224 TGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 224 ~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
+..+.|+++-+..+|++|++++
T Consensus 12 ~~~i~yf~~~rpqkK~~k~~~~ 33 (84)
T TIGR00739 12 IFLIFYFLIIRPQRKRRKAHKK 33 (84)
T ss_pred HHHHHHHheechHHHHHHHHHH
Confidence 3344455554333333433333
No 325
>PHA03239 envelope glycoprotein M; Provisional
Probab=52.50 E-value=2.3e+02 Score=27.61 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=8.1
Q ss_pred CcccccccCcccc
Q psy4795 269 TDDERDDIDDEII 281 (285)
Q Consensus 269 ~~~~~~~~~~~~~ 281 (285)
-..-++|+||||-
T Consensus 416 ~~~~~~~~~~~~~ 428 (429)
T PHA03239 416 RRSREGDADDDIY 428 (429)
T ss_pred hccccCccccccc
Confidence 3344567888873
No 326
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=52.39 E-value=1.6e+02 Score=26.91 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhc-ccCChhHHH----HHHHHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHhhhhhhc
Q psy4795 97 GYVMICFGVVNAICSLLFGTLMK-FIGRSPLMA----LGFIVHCCLIWILVVWRPHPN-NPKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 97 G~v~~~~gv~~~i~s~l~G~LsD-riGrk~~i~----~g~~l~~i~~~~l~~~~p~~~-~~~~~~~~~~l~Gig~g~~~~ 170 (285)
....+++-.+..+|...-|..++ +..||+.+. .|.++..+..+......+++. ....+++..++.|.+.=..|+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 35666777777778788888887 477777665 333444444444334444221 244455656666665544444
Q ss_pred ccccceeeeccccc-hhHhHHHHHHHHHHHHH
Q psy4795 171 QVNGLYGTLFRRNK-EAAFSNFRLWESVGFVI 201 (285)
Q Consensus 171 ~~~ali~~~fp~~~-~~afs~~~l~~~lG~~i 201 (285)
.+-.+--| ++++. ....-.+.+.-.+|+.+
T Consensus 224 ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILNLPHE-YKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhcChhh-hcCCCcceehhHHHHHHHHHHHH
Confidence 33222222 22222 33444555555555543
No 327
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=51.40 E-value=1.5e+02 Score=28.63 Aligned_cols=12 Identities=8% Similarity=0.349 Sum_probs=6.7
Q ss_pred hhhhhhcccCCh
Q psy4795 113 LFGTLMKFIGRS 124 (285)
Q Consensus 113 l~G~LsDriGrk 124 (285)
+..++.++.|.|
T Consensus 82 i~~~iv~~~~~~ 93 (431)
T TIGR00784 82 LIEKILSIVKGD 93 (431)
T ss_pred HHHHHHHHhCCC
Confidence 344555666665
No 328
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=51.34 E-value=28 Score=27.19 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 216 YVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 216 ~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
..+++++++-.+.+-+..|+.+|+++|...
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 344445555555566666666666555444
No 329
>COG1422 Predicted membrane protein [Function unknown]
Probab=51.21 E-value=20 Score=31.15 Aligned_cols=14 Identities=0% Similarity=0.086 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy4795 223 VTGFCGYVIVEVRH 236 (285)
Q Consensus 223 v~~~v~~~~~e~~~ 236 (285)
.++.+-+..+++..
T Consensus 60 ~~~i~~~~liD~ek 73 (201)
T COG1422 60 YITILQKLLIDQEK 73 (201)
T ss_pred HHHHHHHHhccHHH
Confidence 44445555555533
No 330
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=51.20 E-value=60 Score=28.40 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4795 213 MKLYVMGVVLVTGFCGYVIVEV 234 (285)
Q Consensus 213 ~~l~il~~~lv~~~v~~~~~e~ 234 (285)
+.++|+.++.+++.+.|++..+
T Consensus 28 YWlfIif~Fp~iG~VaYfvav~ 49 (251)
T COG4700 28 YWLFIIFCFPVIGCVAYFVAVM 49 (251)
T ss_pred HHHHHHHHhcccchhhHHHHHh
Confidence 3488888999999999999876
No 331
>KOG3817|consensus
Probab=51.10 E-value=93 Score=29.64 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=51.5
Q ss_pred ecccchHHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHH--HHHHHHHH---HHHHHHhcc--cCCCCcchHHHHhhhhh
Q psy4795 12 ALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA--LGFIVHCC---LIWILVVWR--PHPNNPKIFFTISGLWG 84 (285)
Q Consensus 12 ~~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~--~g~~~~~~---~l~~fl~~e--~~~~~p~l~~~~~~ft~ 84 (285)
.+-+|..-+..+..|+..++.|=. .-|++.++ .|.+++++ ++++|+.|+ ||....+.-.+..++..
T Consensus 132 i~r~d~krflvfv~gi~Lff~ar~-------Lsrn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt~~~~iliGgWs~s 204 (452)
T KOG3817|consen 132 IIRLDLKRFLVFVVGILLFFSARR-------LSRNSVFYYSSGIVIGILASLLVVIFLVARFFPKKTMMYGILIGGWSIS 204 (452)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHH-------hccCceEEEecccHHHHHHHHHHHHHHHHHhcccccceEEEEEccchhH
Confidence 345788888888888888886443 23333333 23333332 345566665 54333333333344555
Q ss_pred hhhhhcc----ch-------hHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy4795 85 AYISCAL----GV-------SSVGYVMICFGVVNAICSLLFGTLMKF 120 (285)
Q Consensus 85 ~Y~~~~l----g~-------~~~G~v~~~~gv~~~i~s~l~G~LsDr 120 (285)
.|+-|.+ .. -..|++. +.|+.++..+.=-|.+.|-
T Consensus 205 lY~i~ql~~nLq~Iwieyr~yvLgYvl-ivgliSfaVCYK~GPp~d~ 250 (452)
T KOG3817|consen 205 LYVIKQLADNLQLIWIEYRDYVLGYVL-IVGLISFAVCYKIGPPKDP 250 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhccCCCCCc
Confidence 5655542 11 1233333 3344455555555666664
No 332
>KOG3626|consensus
Probab=50.80 E-value=1e+02 Score=32.14 Aligned_cols=88 Identities=15% Similarity=0.010 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhhhhcccccceeeecc-ccchhHhHHHH-HHHHHHHHHHHHHhhhh----hHHH-------------
Q psy4795 153 IFFTISGLWGVGDAVWQTQVNGLYGTLFR-RNKEAAFSNFR-LWESVGFVIAYAYSTHL----CARM------------- 213 (285)
Q Consensus 153 ~~~~~~~l~Gig~g~~~~~~~ali~~~fp-~~~~~afs~~~-l~~~lG~~ig~~~s~~l----~~~~------------- 213 (285)
.+++..++.-+..+..+++...++-..+| ++|.-|.++.. +.|-+|..=+..+-+.+ |+.|
T Consensus 588 ~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~W~~~C~~~GsC~iY 667 (735)
T KOG3626|consen 588 IFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLLWGKSCGSRGSCLIY 667 (735)
T ss_pred HHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHHhhcccCCCCceeee
Confidence 34444445556677777777777777775 45577777544 44555766565554442 3333
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 214 --------KLYVMGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 214 --------~l~il~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
.+++.+.+-+++.+.+++.-+-.||+.
T Consensus 668 d~~~lr~~y~gl~~~~~~~~~i~~i~~~~v~r~~~ 702 (735)
T KOG3626|consen 668 DNDSLRYRYLGLHIILKVIALILLIIDLYVWRKLA 702 (735)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 234555556777777777666655433
No 333
>KOG4332|consensus
Probab=50.46 E-value=2.2e+02 Score=26.68 Aligned_cols=190 Identities=16% Similarity=0.132 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-hHHHHHHHHHHHHHHHHHHhcccCCCCcchHH---------HHhhh
Q psy4795 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPNNPKIFF---------TISGL 82 (285)
Q Consensus 13 ~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~---------~~~~f 82 (285)
.|=.-+|.+.++---.+.+++...|.|++.-|| |..+.-.+...+..+. -..|.-+..++.. +.+.|
T Consensus 69 FgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT---KhSpqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 69 FGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT---KHSPQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred ccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh---hcCCceEEEeehhhhhhHHHHHHHHHH
Confidence 344456655444334455566777999999999 6554433333322111 1122222222332 22334
Q ss_pred hhhhhhhc---cchh--HHH-----HHHHHHHHHHHHHHhhhhhhhcccCChhH--HHHHHHHHHHHH-HHHHHhCCCCC
Q psy4795 83 WGAYISCA---LGVS--SVG-----YVMICFGVVNAICSLLFGTLMKFIGRSPL--MALGFIVHCCLI-WILVVWRPHPN 149 (285)
Q Consensus 83 t~~Y~~~~---lg~~--~~G-----~v~~~~gv~~~i~s~l~G~LsDriGrk~~--i~~g~~l~~i~~-~~l~~~~p~~~ 149 (285)
-..|.... .|.+ +.. -+..-.++..++.+.++-.+.|.+|--|+ ...+....+++. +.+-.|..+-+
T Consensus 146 EsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENyg 225 (454)
T KOG4332|consen 146 ESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYG 225 (454)
T ss_pred HHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccC
Confidence 44444332 3332 211 13344566777777777788998665555 334443333333 23445544322
Q ss_pred Ch------------HHHHHH----HHHHHHhhhhhhcccccceeeecc----c--cc--hhHhHHHHHHHHHHHHHHHHH
Q psy4795 150 NP------------KIFFTI----SGLWGVGDAVWQTQVNGLYGTLFR----R--NK--EAAFSNFRLWESVGFVIAYAY 205 (285)
Q Consensus 150 ~~------------~~~~~~----~~l~Gig~g~~~~~~~ali~~~fp----~--~~--~~afs~~~l~~~lG~~ig~~~ 205 (285)
++ ....+. ..++|--.+++.+.++..+--..| . +. |..|+.+-+..-+|+.+..=+
T Consensus 226 dps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl 305 (454)
T KOG4332|consen 226 DPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRL 305 (454)
T ss_pred ChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHH
Confidence 21 011111 245677777777777777655443 2 22 678888888888888877433
No 334
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.12 E-value=26 Score=35.88 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=10.7
Q ss_pred HHHHHhhhhhhcccccceee
Q psy4795 159 GLWGVGDAVWQTQVNGLYGT 178 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~ 178 (285)
.++.+|||+. +|+++++.+
T Consensus 239 t~LTIGDGLV-sQIPALliS 257 (696)
T COG1298 239 TLLTIGDGLV-SQIPALLIS 257 (696)
T ss_pred EEEEEcchHH-HHhHHHHHH
Confidence 3455677765 455655543
No 335
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=49.54 E-value=18 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVE 233 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e 233 (285)
.+-+++++.+.|+.+.
T Consensus 75 vInFlIiA~vvf~~vk 90 (127)
T TIGR00220 75 IINFLIIAFAIFMIIK 90 (127)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666676653
No 336
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=49.39 E-value=22 Score=28.50 Aligned_cols=25 Identities=4% Similarity=0.123 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 213 MKLYVMGVVLVTGFCGYVIVEVRHM 237 (285)
Q Consensus 213 ~~l~il~~~lv~~~v~~~~~e~~~~ 237 (285)
|.+-++....++.+++++.+-+..+
T Consensus 35 WNysiL~Ls~vvlvi~~~LLgrsi~ 59 (125)
T PF15048_consen 35 WNYSILALSFVVLVISFFLLGRSIQ 59 (125)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444555555666666666665444
No 337
>PRK03427 cell division protein ZipA; Provisional
Probab=49.08 E-value=19 Score=33.71 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4795 216 YVMGVVLVTGFCGYVIVEVRHMMKAR 241 (285)
Q Consensus 216 ~il~~~lv~~~v~~~~~e~~~~~~~~ 241 (285)
.|++++..++.+..+.--.++.||+|
T Consensus 7 LiLivvGAIAIiAlL~HGlWtsRKer 32 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFWTSRKER 32 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccccc
Confidence 45666666777777777778888876
No 338
>KOG3682|consensus
Probab=48.30 E-value=23 Score=36.31 Aligned_cols=49 Identities=18% Similarity=0.038 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHhhhhhcCChHH---HHHHHHHHHHhcCccCCcccccccCcc
Q psy4795 231 IVEVRHMMKARRQKRLAEDPKA---AAIAAAEAKAAQVVEETDDERDDIDDE 279 (285)
Q Consensus 231 ~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
.-+|+.+++.|+++-.+.+++. ++.+.-.+++..++||++|+||-++++
T Consensus 82 ~~~wk~~~~~~~~~~~~~k~~~~~~t~~~~eS~k~~~~~eEt~dfe~~l~~~ 133 (930)
T KOG3682|consen 82 ESIWKVRPAARKFETDKNKIAAFKWTSKKLESKKSEEKGEETYDFEDPLGAT 133 (930)
T ss_pred HHHHHhhHHHHhhcCcchHHHHHHhhHHhhcChhhhhchhhccccccccchh
Confidence 4467777777665554444333 122222334477889999999988765
No 339
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=47.62 E-value=29 Score=28.07 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVE 233 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e 233 (285)
++-+++++.+.|+.+.
T Consensus 73 vInFlIiA~vvF~ivk 88 (130)
T PRK13955 73 IFDFLIIAASIFMFVK 88 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666666664
No 340
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=47.14 E-value=6.3 Score=38.44 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q psy4795 221 VLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 221 ~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
++++..+.+..+..+.+|++++
T Consensus 365 ivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 365 IVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ----------------------
T ss_pred HHHHHHHhheeeeehhcccccc
Confidence 3344444445555444444443
No 341
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=46.89 E-value=22 Score=32.25 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.7
Q ss_pred HhHHhhhhhc
Q psy4795 238 MKARRQKRLA 247 (285)
Q Consensus 238 ~~~~~~~~~~ 247 (285)
||+|++-|+.
T Consensus 97 rkek~~iee~ 106 (279)
T PF07271_consen 97 RKEKRMIEEK 106 (279)
T ss_pred hhHHHHHHHH
Confidence 4455544433
No 342
>PTZ00234 variable surface protein Vir12; Provisional
Probab=46.41 E-value=14 Score=35.92 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4795 217 VMGVVLVTGFCGYVIVEV 234 (285)
Q Consensus 217 il~~~lv~~~v~~~~~e~ 234 (285)
|+++..|+|++.|++...
T Consensus 367 iim~~ailGtifFlfyyn 384 (433)
T PTZ00234 367 SIVGASIIGVLVFLFFFF 384 (433)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 567778889988888775
No 343
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=46.35 E-value=38 Score=26.54 Aligned_cols=13 Identities=15% Similarity=-0.197 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q psy4795 226 FCGYVIVEVRHMMK 239 (285)
Q Consensus 226 ~v~~~~~e~~~~~~ 239 (285)
.+.|+++ .|.+||
T Consensus 15 ~i~yF~~-iRPQkK 27 (109)
T PRK05886 15 GGFMYFA-SRRQRK 27 (109)
T ss_pred HHHHHHH-ccHHHH
Confidence 3445554 333333
No 344
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=46.02 E-value=37 Score=26.38 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhH
Q psy4795 224 TGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 224 ~~~v~~~~~e~~~~~~~ 240 (285)
+..+.|++. +|.+||+
T Consensus 27 i~~i~yf~~-~RpqkK~ 42 (106)
T PRK05585 27 FFAIFYFLI-IRPQQKR 42 (106)
T ss_pred HHHHHHHHh-ccHHHHH
Confidence 333445544 3443333
No 345
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=45.30 E-value=11 Score=29.36 Aligned_cols=11 Identities=36% Similarity=0.737 Sum_probs=5.2
Q ss_pred cCCcccccccC
Q psy4795 267 EETDDERDDID 277 (285)
Q Consensus 267 ~~~~~~~~~~~ 277 (285)
||+++++|||.
T Consensus 91 ee~eE~dddmg 101 (105)
T cd04411 91 EEEEEEDEDFG 101 (105)
T ss_pred ccccccccccC
Confidence 33344455664
No 346
>KOG2568|consensus
Probab=44.14 E-value=3.4e+02 Score=27.15 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=8.8
Q ss_pred hhHhHHHHHHHHH
Q psy4795 185 EAAFSNFRLWESV 197 (285)
Q Consensus 185 ~~afs~~~l~~~l 197 (285)
-.-.++||-+.|+
T Consensus 375 ~vKl~lYr~F~n~ 387 (518)
T KOG2568|consen 375 IVKLSLYRKFTNT 387 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777766665
No 347
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=43.61 E-value=29 Score=31.70 Aligned_cols=12 Identities=0% Similarity=0.257 Sum_probs=6.0
Q ss_pred HHHhHHhhhhhc
Q psy4795 236 HMMKARRQKRLA 247 (285)
Q Consensus 236 ~~~~~~~~~~~~ 247 (285)
..||+||++++|
T Consensus 238 r~krk~k~~eME 249 (278)
T PF06697_consen 238 RYKRKKKIEEME 249 (278)
T ss_pred hhhHHHHHHHHH
Confidence 334444566655
No 348
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=43.55 E-value=1.5e+02 Score=24.58 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccC-----ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhc
Q psy4795 101 ICFGVVNAICSLLFGTLMKFIG-----RSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQT 170 (285)
Q Consensus 101 ~~~gv~~~i~s~l~G~LsDriG-----rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~ 170 (285)
..++++..+.|.+.-.+..|.. -.-+-+.|.+.|-++.+....+..+++..+.+.-...+.|+..|...+
T Consensus 68 f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~giSi~Gai~HN~gQl~va~~i~~~~~i~~ylP~Ll~~giitG~~~G 142 (148)
T PF07456_consen 68 FLFSLAGGLLSLLVMALLKKLFKKKFSLIGISIAGAIAHNIGQLIVASLIIQSPAIFYYLPVLLIAGIITGLFTG 142 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554 344556677788888776544444355556666667777777776654
No 349
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=43.54 E-value=11 Score=29.77 Aligned_cols=11 Identities=45% Similarity=0.873 Sum_probs=4.8
Q ss_pred cCCcccccccC
Q psy4795 267 EETDDERDDID 277 (285)
Q Consensus 267 ~~~~~~~~~~~ 277 (285)
||++++.|||.
T Consensus 97 ee~ee~ddDmg 107 (112)
T PTZ00373 97 EEEEEEEDDLG 107 (112)
T ss_pred ccccccccccc
Confidence 33334444554
No 350
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=43.28 E-value=65 Score=27.96 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy4795 222 LVTGFCGYVIVEV 234 (285)
Q Consensus 222 lv~~~v~~~~~e~ 234 (285)
++-+.++-.+=+|
T Consensus 41 ~iAga~SMa~G~y 53 (213)
T PF01988_consen 41 LIAGAISMAVGEY 53 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 351
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=42.50 E-value=3.4e+02 Score=26.58 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhh---------hhhhhcccCChhHHH
Q psy4795 96 VGYVMICFGVVNAICSLL---------FGTLMKFIGRSPLMA 128 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l---------~G~LsDriGrk~~i~ 128 (285)
.|-+..+.+.+.++|..+ .-.+.+++|+|+.-.
T Consensus 58 l~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~~ 99 (441)
T PF02447_consen 58 LGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRAPL 99 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcccH
Confidence 334445555566666554 223455789886543
No 352
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=41.85 E-value=47 Score=27.41 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
..|++.+.++-.+.+....+-.+||+|+...
T Consensus 32 ~tILiaIvVliiiiivli~lcssRKkKaaAA 62 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSSRKKKAAAA 62 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 4445555455555555555555566555433
No 353
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=41.74 E-value=64 Score=28.46 Aligned_cols=41 Identities=12% Similarity=-0.062 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 194 WESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVR 235 (285)
Q Consensus 194 ~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~ 235 (285)
....|.+.|.+ +...+...-+..-++-++-+.++-.+-||.
T Consensus 15 vt~~alvaG~a-ga~~~~~~ili~Gla~liAga~SMa~GeYl 55 (225)
T cd02434 15 VTIFAIVAGVV-GAGLSPFVILIIGFANLLADGISMAAGEYV 55 (225)
T ss_pred HHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445544 223333333333444455555555555543
No 354
>KOG2963|consensus
Probab=41.69 E-value=37 Score=32.00 Aligned_cols=10 Identities=30% Similarity=0.906 Sum_probs=3.8
Q ss_pred CCCcchHHHH
Q psy4795 70 PNNPKIFFTI 79 (285)
Q Consensus 70 ~~~p~l~~~~ 79 (285)
|..|.+-|.+
T Consensus 100 PqGPTLtFkV 109 (405)
T KOG2963|consen 100 PQGPTLTFKV 109 (405)
T ss_pred CCCCceEEEe
Confidence 3334443333
No 355
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=40.51 E-value=41 Score=22.57 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy4795 223 VTGFCGYVIV 232 (285)
Q Consensus 223 v~~~v~~~~~ 232 (285)
+.+.++..+.
T Consensus 12 v~~lLg~~I~ 21 (50)
T PF12606_consen 12 VMGLLGLSIC 21 (50)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 356
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.48 E-value=50 Score=25.15 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy4795 223 VTGFCGYVIVEV 234 (285)
Q Consensus 223 v~~~v~~~~~e~ 234 (285)
+++++..+..|.
T Consensus 12 ~LA~lLlisSev 23 (95)
T PF07172_consen 12 LLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHhhh
Confidence 344444444443
No 357
>KOG2881|consensus
Probab=40.41 E-value=1.5e+02 Score=27.00 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 190 NFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 190 ~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
...++--++..+|-+.-..++ +.+.+. ++.+.|.+.-.|.-+...+.++
T Consensus 108 AL~lMTiLS~~lG~aap~lip-r~~T~~------~~t~LF~iFGlkmL~eg~~~~~ 156 (294)
T KOG2881|consen 108 ALALMTILSVLLGWAAPNLIP-RKYTYY------LATALFLIFGLKMLKEGWEMSP 156 (294)
T ss_pred HHHHHHHHHHHHHHhhhhhch-HHHHHH------HHHHHHHHHHHHHHHHhhcCCC
Confidence 334444555555554433333 333332 4455566666666555544444
No 358
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=40.07 E-value=61 Score=24.00 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4795 216 YVMGVVLVTGFCGYVIVEVRH 236 (285)
Q Consensus 216 ~il~~~lv~~~v~~~~~e~~~ 236 (285)
..+.+.++++.+-+.++.+.+
T Consensus 10 ialiv~~iiaIvvW~iv~ieY 30 (81)
T PF00558_consen 10 IALIVALIIAIVVWTIVYIEY 30 (81)
T ss_dssp HHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666554433
No 359
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.83 E-value=2.2e+02 Score=24.77 Aligned_cols=27 Identities=15% Similarity=-0.034 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 219 GVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 219 ~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
+++.+++.+..=.=+|..+|+++++.+
T Consensus 140 l~~vLvGVL~LQaG~wYAer~~~~~~~ 166 (196)
T smart00786 140 LLFVLVGVLVLQAGLWYAERKDAKQKE 166 (196)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHH
Confidence 344444544444444444555544444
No 360
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=39.57 E-value=49 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMK 239 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~ 239 (285)
++++++++.+.=-++-.|+..|
T Consensus 7 lIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcc
Confidence 4445555555555555565554
No 361
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=39.50 E-value=1.2e+02 Score=21.02 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=15.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHhhhh
Q psy4795 214 KLYVMGVVLV-TGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 214 ~l~il~~~lv-~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
++.+++.+++ ++-++|..+--..+.++|++.+
T Consensus 11 riVLLISfiIlfgRl~Y~~I~a~~hHq~k~~a~ 43 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIGAWVHHQDKKQAQ 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 3444444443 3336666666555555544433
No 362
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=39.50 E-value=28 Score=29.31 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhh
Q psy4795 223 VTGFCGYVIVEVRHMMKARRQ 243 (285)
Q Consensus 223 v~~~v~~~~~e~~~~~~~~~~ 243 (285)
.++.+.-.++.+|..|-+||.
T Consensus 103 g~s~l~i~yfvir~~R~r~~~ 123 (163)
T PF06679_consen 103 GLSALAILYFVIRTFRLRRRN 123 (163)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 333333333444444444433
No 363
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=39.48 E-value=83 Score=29.53 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4795 209 LCARMKLYVMGVVLVTGFCGYVIVEVRHMMK 239 (285)
Q Consensus 209 l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~ 239 (285)
+......|+..++++.+..+++.+.++.+|+
T Consensus 179 L~~~lg~yIi~~vl~~gll~~~~~~~~~~~~ 209 (347)
T PF07854_consen 179 LFRLLGIYIIPGVLALGLLAAFFLKREKPRE 209 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccch
Confidence 3444557888899999999988887654333
No 364
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=39.40 E-value=1.2e+02 Score=28.67 Aligned_cols=8 Identities=0% Similarity=-0.184 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q psy4795 158 SGLWGVGD 165 (285)
Q Consensus 158 ~~l~Gig~ 165 (285)
.....++.
T Consensus 113 pi~~~i~~ 120 (413)
T cd01116 113 PVTIRLCE 120 (413)
T ss_pred HHHHHHHH
Confidence 44444443
No 365
>PRK10263 DNA translocase FtsK; Provisional
Probab=39.10 E-value=6.1e+02 Score=28.61 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy4795 98 YVMICFGVVNA 108 (285)
Q Consensus 98 ~v~~~~gv~~~ 108 (285)
++..++|++..
T Consensus 74 ~L~~LFGl~AY 84 (1355)
T PRK10263 74 TLFFIFGVMAY 84 (1355)
T ss_pred HHHHHHhHHHH
Confidence 33444444443
No 366
>KOG2766|consensus
Probab=38.87 E-value=62 Score=29.56 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4795 211 ARMKLYVMGVVLVTGFCGY 229 (285)
Q Consensus 211 ~~~~l~il~~~lv~~~v~~ 229 (285)
++|..++-.+...++.+.|
T Consensus 279 v~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 279 VDWLYFLAFATIATGLIIY 297 (336)
T ss_pred hhhhhHHHHHHHHHhhEEe
Confidence 3444455555555666555
No 367
>KOG4255|consensus
Probab=38.71 E-value=2.4e+02 Score=26.94 Aligned_cols=31 Identities=0% Similarity=-0.029 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4795 209 LCARMKLYVMGVVLVTGFCGYVIVEVRHMMK 239 (285)
Q Consensus 209 l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~ 239 (285)
++..+.++++..+++.+.+.|....+.-+.+
T Consensus 187 Fs~s~FFl~l~~~~~~alaAF~vL~r~~~~~ 217 (439)
T KOG4255|consen 187 FSVSTFFLALFAFTCAALAAFFVLYRLGAHW 217 (439)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4455667788888888888888877654433
No 368
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=38.45 E-value=53 Score=25.16 Aligned_cols=25 Identities=4% Similarity=0.075 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 221 VLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 221 ~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
+.++..+.|+.+-+..+|++|++++
T Consensus 15 ~vl~~~ifyFli~RPQrKr~K~~~~ 39 (97)
T COG1862 15 LVLIFAIFYFLIIRPQRKRMKEHQE 39 (97)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3344455555555444444444444
No 369
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=37.82 E-value=2.2e+02 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCChh
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKFIGRSP 125 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~ 125 (285)
..+...-+..++++.+++.+..|+=||+
T Consensus 156 ~~~~~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 156 WMLIIIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666677788888888887776664
No 370
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=37.58 E-value=2.4e+02 Score=23.37 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=37.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 186 AAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 186 ~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
.+-.+.++..-+|+.++.+++.++...-.+.++.++ ++.+.=+++-+++.||.+++++
T Consensus 76 ~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~--lg~~l~fl~~r~ysRkl~~~~~ 133 (150)
T COG3086 76 KSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAF--LGLALGFLLARRYSRKLAKRTE 133 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHhhhccc
Confidence 444589999999999999999888776444433332 3333334444566666555444
No 371
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=37.48 E-value=2.1e+02 Score=22.71 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=35.2
Q ss_pred ccccceeeec----cccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 171 QVNGLYGTLF----RRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 171 ~~~ali~~~f----p~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
..++-.+|.+ |++. -.+--+-+..=-+++.+|..++..+... ..+..+.-++...+.|.++.+..++.+
T Consensus 49 ~~~~~~GD~V~v~i~~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~-e~~~~l~~l~~l~~~~~~~~~~~~~~~ 122 (135)
T PF04246_consen 49 PIGAKVGDRVEVEIPESSLLKAAFLVYLLPLLALIAGAVLGSYLGGS-ELWAILGGLLGLALGFLILRLFDRRLK 122 (135)
T ss_pred CCCCCCCCEEEEEeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555543 3333 2233355666667777777777776655 333333334444444555544444333
No 372
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=37.45 E-value=3.6e+02 Score=25.43 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCh
Q psy4795 98 YVMICFGVVNAICSLLFGTLMKFIGRS 124 (285)
Q Consensus 98 ~v~~~~gv~~~i~s~l~G~LsDriGrk 124 (285)
..+....+++.+...+..++.+|++..
T Consensus 192 ~l~l~aa~~wa~~~il~~~~~~~~~~~ 218 (358)
T PLN00411 192 ALLTIQGIFVSVSFILQAHIMSEYPAA 218 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 345555666666767666666666554
No 373
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=37.39 E-value=86 Score=30.74 Aligned_cols=35 Identities=14% Similarity=-0.058 Sum_probs=24.3
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q psy4795 213 MK-LYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLA 247 (285)
Q Consensus 213 ~~-l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~ 247 (285)
|+ ..+.++.++++++.|.=.-+...|++++.++++
T Consensus 406 ~~~~ilq~v~lvi~~lIY~PFvK~~dk~~~~~~~~~ 441 (452)
T PRK10297 406 VAALLVALFNLGIATLIYLPFVVVANKAQNAIDKEE 441 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44 455666778888888888877777766654433
No 374
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=36.37 E-value=1.1e+02 Score=21.85 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q psy4795 210 CARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQK 244 (285)
Q Consensus 210 ~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~ 244 (285)
+.+|--.=.+.-++++.++|+.=-+...|++||+.
T Consensus 30 p~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 30 PSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred cccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 33444444445566777777665555555555443
No 375
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=36.32 E-value=66 Score=25.87 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVEV 234 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~ 234 (285)
.+-+++++.+.|..+..
T Consensus 73 vinFlIia~vvF~~vk~ 89 (125)
T PRK13953 73 IVDFLIIAFAIFIFVKV 89 (125)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666777776554
No 376
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=36.27 E-value=85 Score=28.07 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhHHhh
Q psy4795 228 GYVIVEVRHMMKARRQ 243 (285)
Q Consensus 228 ~~~~~e~~~~~~~~~~ 243 (285)
+-....+|+++|+|+.
T Consensus 58 sS~~Tk~~~~~K~~~~ 73 (237)
T TIGR00297 58 GSAVTRYGQEEKKAAG 73 (237)
T ss_pred hHHHHhccHHHHHhcc
Confidence 3444455665555543
No 377
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=36.02 E-value=77 Score=28.11 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhHHh
Q psy4795 226 FCGYVIVEVRHMMKARR 242 (285)
Q Consensus 226 ~v~~~~~e~~~~~~~~~ 242 (285)
..+-....+|+++|++.
T Consensus 50 ~~ss~~Tk~~~~~K~~~ 66 (226)
T PF01940_consen 50 ISSSLATKYKKERKEKL 66 (226)
T ss_pred HHHHHHHhCChHHHHHh
Confidence 33444444555555443
No 378
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.99 E-value=1.2e+02 Score=23.54 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 214 KLYVMGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 214 ~l~il~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
.+.+++++.+++.++-..+......++
T Consensus 12 LiElLVvl~Iigil~~~~~p~~~~~~~ 38 (149)
T COG2165 12 LIELLVVLAIIGILAALALPSLQGSID 38 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 467777788888877777776544333
No 379
>COG2119 Predicted membrane protein [Function unknown]
Probab=35.73 E-value=2.9e+02 Score=23.84 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHH
Q psy4795 103 FGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCC 136 (285)
Q Consensus 103 ~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i 136 (285)
..+++.++-..+.++++|+..|++-.++.++..+
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~ 176 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLI 176 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 3455666667788899999999988877665443
No 380
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.67 E-value=41 Score=29.24 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhhhhH
Q psy4795 195 ESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 195 ~~lG~~ig~~~s~~l~~ 211 (285)
+.+|-++...+++.+..
T Consensus 27 ~~i~~~ln~~f~P~i~~ 43 (201)
T COG1422 27 DGIGGALNVVFGPLLSP 43 (201)
T ss_pred HHHHHHHHHHHhhhccc
Confidence 34444444445555444
No 381
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=35.38 E-value=82 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.142 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
+++++++-...+.+..|++++|.
T Consensus 10 livf~ifVap~WL~lHY~sk~~~ 32 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKWKS 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44455555566666667665543
No 382
>PF14981 FAM165: FAM165 family
Probab=35.19 E-value=85 Score=20.65 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4795 212 RMKLYVMGVVLVTGFCGYVIVEVRHMMK 239 (285)
Q Consensus 212 ~~~l~il~~~lv~~~v~~~~~e~~~~~~ 239 (285)
+..+||+..=.++-+..|.-+....+|+
T Consensus 7 PlLlYILaaKtlilClaFAgvK~yQ~kr 34 (51)
T PF14981_consen 7 PLLLYILAAKTLILCLAFAGVKMYQRKR 34 (51)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4457777777777777776666444433
No 383
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.97 E-value=1.5e+02 Score=24.48 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4795 217 VMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 217 il~~~lv~~~v~~~~~e 233 (285)
+..++...++++|.+.-
T Consensus 11 ~~ag~a~~~flgYciYF 27 (148)
T TIGR00985 11 IAAGIAAAAFLGYAIYF 27 (148)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444555666665543
No 384
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.63 E-value=74 Score=24.99 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=9.9
Q ss_pred HHHHHHhhhhhhhccc
Q psy4795 106 VNAICSLLFGTLMKFI 121 (285)
Q Consensus 106 ~~~i~s~l~G~LsDri 121 (285)
..++.+...|++.||+
T Consensus 54 sGilVGa~iG~llD~~ 69 (116)
T COG5336 54 SGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444555568888873
No 385
>PRK10995 inner membrane protein; Provisional
Probab=34.28 E-value=1.5e+02 Score=25.88 Aligned_cols=21 Identities=5% Similarity=-0.023 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q psy4795 188 FSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 188 fs~~~l~~~lG~~ig~~~s~~ 208 (285)
-+...........+.+++.+.
T Consensus 43 ia~~~~~~a~~ill~f~~~G~ 63 (221)
T PRK10995 43 QALMASVYVFAIMMVAFYAGQ 63 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433
No 386
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.19 E-value=84 Score=24.68 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 198 GFVIAYAYSTHLC--ARMKLYVMGVVLVTGFCGYVIVEVRHMM 238 (285)
Q Consensus 198 G~~ig~~~s~~l~--~~~~l~il~~~lv~~~v~~~~~e~~~~~ 238 (285)
|..+|..++-++- .+++-|-++++++++++.=+....|...
T Consensus 55 GilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rsag 97 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRSAG 97 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555554432 2345667778888887665554444433
No 387
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.19 E-value=2.7e+02 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhcccC
Q psy4795 91 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIG 122 (285)
Q Consensus 91 lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriG 122 (285)
+..+..|..++. ..-..++.++|.+.|++|
T Consensus 88 ~l~p~lGa~~t~--~l~i~gQli~glliD~fG 117 (150)
T COG3238 88 LLAPRLGAATTI--ALVIAGQLIMGLLIDHFG 117 (150)
T ss_pred HhccchhHHHHH--HHHHHHHHHHHHHHHhhc
Confidence 344555543332 233567777888888866
No 388
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=34.18 E-value=1.2e+02 Score=29.17 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=12.1
Q ss_pred HHhhhhhhcccccceeeeccccchhHhH
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRNKEAAFS 189 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~~~~afs 189 (285)
|-|.|.--.|.+-.+.+..+.++++.+|
T Consensus 179 ~GG~GaGavPLS~iYs~itg~s~~~~~s 206 (438)
T COG3493 179 GGGMGAGAVPLSEIYSSITGGSQEEYFS 206 (438)
T ss_pred cCCCCCCcccHHHHHHHHcCCCHHHHHH
Confidence 3333333444444444444444444433
No 389
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=33.35 E-value=87 Score=27.93 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=8.0
Q ss_pred HHHHHHHHHH-hhhhhHHH
Q psy4795 196 SVGFVIAYAY-STHLCARM 213 (285)
Q Consensus 196 ~lG~~ig~~~-s~~l~~~~ 213 (285)
+..+.+.++. ++.++-++
T Consensus 7 sq~~il~fa~Vla~~p~y~ 25 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQYY 25 (233)
T ss_pred HHHHHHHHHHHHHhccHHH
Confidence 3444444444 44444444
No 390
>PF13584 BatD: Oxygen tolerance
Probab=33.08 E-value=1.2e+02 Score=29.49 Aligned_cols=23 Identities=4% Similarity=0.060 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 213 MKLYVMGVVLVTGFCGYVIVEVR 235 (285)
Q Consensus 213 ~~l~il~~~lv~~~v~~~~~e~~ 235 (285)
+..+++++++++..+++++..++
T Consensus 426 ~~~~~l~~~~~l~~~~~~~~~~~ 448 (484)
T PF13584_consen 426 WWFWLLLLLPLLLLLLLLILRRK 448 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444
No 391
>PRK08156 type III secretion system protein SpaS; Validated
Probab=32.90 E-value=88 Score=29.78 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
..+.+++++++.+=|.+-.|++.|+-|.
T Consensus 183 ~~~~~~~lvia~~D~~~Qr~~~~k~lkM 210 (361)
T PRK08156 183 LTFLACALIVLILDFIAEYFLHMKDMKM 210 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3445666777777777777777666543
No 392
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=32.73 E-value=2.4e+02 Score=28.24 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHh--hhhhhhcccCChhH
Q psy4795 100 MICFGVVNAICSL--LFGTLMKFIGRSPL 126 (285)
Q Consensus 100 ~~~~gv~~~i~s~--l~G~LsDriGrk~~ 126 (285)
|+-.++.+--|-+ .-.++..|.++|.+
T Consensus 94 mlGvGvae~tG~i~a~i~~~v~~~p~~~~ 122 (513)
T TIGR00819 94 LLGAGIAEKSGLIPALMRKLASHSNAKLA 122 (513)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHhCCCchh
Confidence 3445555544433 33456666666643
No 393
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=31.93 E-value=1.4e+02 Score=22.26 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhhhhcccCCh
Q psy4795 105 VVNAICSLLFGTLMKFIGRS 124 (285)
Q Consensus 105 v~~~i~s~l~G~LsDriGrk 124 (285)
+...+.+.+.|.+.||..||
T Consensus 86 ~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 86 AVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 45566777889999998775
No 394
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=31.84 E-value=2.5e+02 Score=22.72 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 190 NFRLWESVGFVIAYAYSTH---LCARMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 190 ~~~l~~~lG~~ig~~~s~~---l~~~~~l~il~~~lv~~~v~~~~~e 233 (285)
-.-+.-.+..+++-+.++. .+..||+++-....++++..-+.+.
T Consensus 15 ~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQ 61 (132)
T PF04120_consen 15 PWAFVIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQ 61 (132)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHH
Confidence 3344445555555555443 3556788877776666444444444
No 395
>PHA03049 IMV membrane protein; Provisional
Probab=31.72 E-value=29 Score=24.63 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4795 215 LYVMGVVLVTGFCGYVIVEV 234 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~ 234 (285)
+.+.+++.+++++.|.+..+
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45667777888888877543
No 396
>PRK11588 hypothetical protein; Provisional
Probab=31.43 E-value=86 Score=31.26 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=8.1
Q ss_pred hhhhcccCChhHH
Q psy4795 115 GTLMKFIGRSPLM 127 (285)
Q Consensus 115 G~LsDriGrk~~i 127 (285)
+++.+|++.|..+
T Consensus 137 ~~l~~k~~~~~~l 149 (506)
T PRK11588 137 LALIRKTRGNEIL 149 (506)
T ss_pred HHHHHHhCCCcEE
Confidence 5677777666433
No 397
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.29 E-value=85 Score=22.85 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy4795 223 VTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 223 v~~~v~~~~~e~~~~~~~ 240 (285)
++-...+.+..|+.+++.
T Consensus 15 ifVap~wl~lHY~~k~~~ 32 (75)
T TIGR02976 15 IFVAPLWLILHYRSKRKT 32 (75)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 333444555555544443
No 398
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=31.24 E-value=38 Score=28.06 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 219 GVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 219 ~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
+++.++.++..++...|.+|-+||-+.
T Consensus 8 ~~l~iilli~~~~~~~kl~kl~r~Y~~ 34 (151)
T PF14584_consen 8 LVLVIILLILIIILNIKLRKLKRRYDA 34 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555566655555443
No 399
>KOG1397|consensus
Probab=31.21 E-value=41 Score=32.31 Aligned_cols=22 Identities=9% Similarity=0.350 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4795 216 YVMGVVLVTGFCGYVIVEVRHM 237 (285)
Q Consensus 216 ~il~~~lv~~~v~~~~~e~~~~ 237 (285)
.-..++++++-+.|.|...|++
T Consensus 236 r~~SivmliaYi~~L~FqL~t~ 257 (441)
T KOG1397|consen 236 RGCSIVMLIAYIAYLWFQLKTA 257 (441)
T ss_pred hccHHHHHHHHHHHHHHhhhcc
Confidence 3456677788888999988883
No 400
>KOG3787|consensus
Probab=31.19 E-value=2.4e+02 Score=27.85 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc---------ccCCh-hHHHHHHHHHHHHHHHHHHhCCCCCChHHHH
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMK---------FIGRS-PLMALGFIVHCCLIWILVVWRPHPNNPKIFF 155 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsD---------riGrk-~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~ 155 (285)
.++++|-..|+| +.+++.|++.+ +.|-. -..+.|.++|....++++++.-+..|++.++
T Consensus 231 lV~~iMWy~PvG--I~fLIagkIlem~Dl~~~~~~Lg~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP~~f~ 299 (507)
T KOG3787|consen 231 LVSWIMWYSPVG--ILFLIAGKILEMEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFI 299 (507)
T ss_pred HHHHHHHHcchh--HHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEccChHHHH
Confidence 344455444443 33445555443 23322 2356788899988888777665566665554
No 401
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.07 E-value=53 Score=23.94 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
+++++++-...+.++.|++++|..+
T Consensus 10 liiF~ifVaPiWL~LHY~sk~~~~~ 34 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSKRQGSQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCC
Confidence 3444555566677777777655443
No 402
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=31.04 E-value=94 Score=31.73 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 217 VMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 217 il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
+.+++++++.+=|.+-.|++.|+-|.
T Consensus 453 ~~~~~~via~~D~~~q~~~~~k~lkM 478 (609)
T PRK12772 453 ITLIMIIIAVADYVYQKYQYNKDLRM 478 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455566666666666666555443
No 403
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=30.91 E-value=1e+02 Score=24.86 Aligned_cols=27 Identities=4% Similarity=0.026 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 210 CARMKLYVMGVVLVTGFCGYVIVEVRH 236 (285)
Q Consensus 210 ~~~~~l~il~~~lv~~~v~~~~~e~~~ 236 (285)
.+..+++++.++.+...+.+..+.+..
T Consensus 56 pl~~~~~~~~~~v~~~~~~~avv~~~~ 82 (237)
T PF02932_consen 56 PLDGWYFICTMFVFSASLEFAVVVYNI 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccccchhhhHHHHhhhhhhhh
Confidence 333444444445555555555555444
No 404
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=30.67 E-value=50 Score=26.60 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy4795 221 VLVTGFCGYVIVEV 234 (285)
Q Consensus 221 ~lv~~~v~~~~~e~ 234 (285)
+++++++-|+.+.-
T Consensus 80 FlIiAf~iFl~Vk~ 93 (130)
T COG1970 80 FLIIAFAIFLVVKA 93 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 405
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=30.29 E-value=99 Score=24.68 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=29.6
Q ss_pred CcchHHHHhhhhhhhhh-----hccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChh
Q psy4795 72 NPKIFFTISGLWGAYIS-----CALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSP 125 (285)
Q Consensus 72 ~p~l~~~~~~ft~~Y~~-----~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~ 125 (285)
+.=+.|...-|.|.-+. +..+.-.-|.+-...+++..+.+...=.+.+|+||+.
T Consensus 61 e~Gi~FW~amYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~lsr~g~~~ 119 (125)
T PF03817_consen 61 EQGIEFWSAMYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLSRIGRKT 119 (125)
T ss_pred HhHHHHHHccHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33455555556554432 2222223445666666676676666666677777654
No 406
>KOG2886|consensus
Probab=30.15 E-value=3.6e+02 Score=23.22 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=8.1
Q ss_pred HHhcCccCCcccccccCc
Q psy4795 261 KAAQVVEETDDERDDIDD 278 (285)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~ 278 (285)
|..+..|-.++-++|.+|
T Consensus 149 e~G~G~ev~~~~~~~~v~ 166 (209)
T KOG2886|consen 149 EIGRGGEVGSEVTGELVD 166 (209)
T ss_pred hhCCCCCCCCcchhHHhh
Confidence 334444444444444444
No 407
>PRK10655 potE putrescine transporter; Provisional
Probab=29.91 E-value=4.9e+02 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKAR 241 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~ 241 (285)
..+...+.+++.+.|.+..+|..+|.|
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 410 MLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 344567778888888876666655554
No 408
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=29.89 E-value=66 Score=25.35 Aligned_cols=8 Identities=25% Similarity=0.185 Sum_probs=3.7
Q ss_pred HHHHHhHH
Q psy4795 234 VRHMMKAR 241 (285)
Q Consensus 234 ~~~~~~~~ 241 (285)
+|.+||++
T Consensus 20 iRPQkKr~ 27 (113)
T PRK06531 20 QRQQKKQA 27 (113)
T ss_pred echHHHHH
Confidence 45544443
No 409
>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.
Probab=29.88 E-value=21 Score=26.61 Aligned_cols=6 Identities=50% Similarity=0.994 Sum_probs=2.0
Q ss_pred cccccc
Q psy4795 271 DERDDI 276 (285)
Q Consensus 271 ~~~~~~ 276 (285)
|+.+||
T Consensus 78 Eed~dm 83 (88)
T PF00428_consen 78 EEDDDM 83 (88)
T ss_dssp S-SSSS
T ss_pred cccccc
Confidence 333444
No 410
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=29.68 E-value=1.6e+02 Score=22.03 Aligned_cols=13 Identities=15% Similarity=-0.077 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q psy4795 226 FCGYVIVEVRHMM 238 (285)
Q Consensus 226 ~v~~~~~e~~~~~ 238 (285)
-+.|++..+++-+
T Consensus 21 Gv~YG~~~~~~L~ 33 (86)
T PF05680_consen 21 GVVYGAYHQRYLK 33 (86)
T ss_pred HHHHHHHHHHHHH
Confidence 3567777776655
No 411
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=29.67 E-value=3.5e+02 Score=22.94 Aligned_cols=87 Identities=9% Similarity=0.214 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-Hhhhhhhcccccceeeecc
Q psy4795 103 FGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG-VGDAVWQTQVNGLYGTLFR 181 (285)
Q Consensus 103 ~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G-ig~g~~~~~~~ali~~~fp 181 (285)
.++...+++++.=.+..|.+|+-.+.+-.++..+.++.+ .+ .|...+...+.| ++|-+.... -+.
T Consensus 37 ~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~------G~-~~~~~~~~iv~gliAElI~~~g-------~y~ 102 (186)
T PF09605_consen 37 PAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLM------GH-GWPMLIVCIVGGLIAELILKKG-------GYK 102 (186)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH------hh-hHHHHHHHHHHHHHHHHHHHhC-------CCC
Confidence 344556677777778899999988777666655543221 11 133333344444 355444221 121
Q ss_pred -ccc-hhHhHHHHHHHHHHHHHHHH
Q psy4795 182 -RNK-EAAFSNFRLWESVGFVIAYA 204 (285)
Q Consensus 182 -~~~-~~afs~~~l~~~lG~~ig~~ 204 (285)
.++ ..++++++++.. |..+=..
T Consensus 103 ~~~~~~iay~vf~~~~~-g~~~p~~ 126 (186)
T PF09605_consen 103 SKKRNTIAYAVFSLGYM-GPYLPIW 126 (186)
T ss_pred cHHHHHHHHHHHHHHHH-hhHHHHH
Confidence 122 567778888877 6654433
No 412
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=29.35 E-value=55 Score=26.59 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVE 233 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e 233 (285)
++-+++++.+.|..+.
T Consensus 80 vI~FlIia~vvF~ivk 95 (134)
T PRK00567 80 VIDFLIIAFAIFLLVK 95 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556666665554
No 413
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=29.21 E-value=93 Score=29.41 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
..+++++++++.+=|.+-.|++.|+-|.
T Consensus 188 ~~~~~~~~via~~D~~~qr~~~~k~lrM 215 (347)
T TIGR00328 188 ILVLLLLLVIAVFDYFFQRWQYIKSLKM 215 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556666778888888777777666554
No 414
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=29.07 E-value=79 Score=27.42 Aligned_cols=30 Identities=7% Similarity=-0.080 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKARRQKRLA 247 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~~~~~~~~ 247 (285)
++++.+++.+..=.=+|-..|+++++.++.
T Consensus 139 Ii~~~LvGVLvLQaG~~YAe~~~~~~~~~~ 168 (196)
T PF08229_consen 139 IIALVLVGVLVLQAGQWYAERKDAKELEEF 168 (196)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhHHHHHHH
Confidence 344445555554444455555555544433
No 415
>PRK11099 putative inner membrane protein; Provisional
Probab=28.91 E-value=5.4e+02 Score=24.86 Aligned_cols=19 Identities=16% Similarity=-0.053 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhhhhcc
Q psy4795 153 IFFTISGLWGVGDAVWQTQ 171 (285)
Q Consensus 153 ~~~~~~~l~Gig~g~~~~~ 171 (285)
..++-.+++|+|..+...-
T Consensus 286 ~~~lGg~lFG~GmvLaGGC 304 (399)
T PRK11099 286 NAVIGGLLFGFGIVLAGGC 304 (399)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4567788888887665543
No 416
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=28.89 E-value=79 Score=19.56 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhHHhhhhhc
Q psy4795 227 CGYVIVEVRHMMKARRQKRLA 247 (285)
Q Consensus 227 v~~~~~e~~~~~~~~~~~~~~ 247 (285)
.++.+.|+..+.|.||+++..
T Consensus 11 At~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456777876666666665543
No 417
>KOG2890|consensus
Probab=28.66 E-value=33 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=12.3
Q ss_pred hhhhhhhcc-cCChhHHHHHHHH
Q psy4795 112 LLFGTLMKF-IGRSPLMALGFIV 133 (285)
Q Consensus 112 ~l~G~LsDr-iGrk~~i~~g~~l 133 (285)
.++|++..+ +|.+..+..-.++
T Consensus 91 ~v~G~~lEp~Wg~~e~lkff~iv 113 (326)
T KOG2890|consen 91 SVGGKFLEPNWGSLELLKFFAIV 113 (326)
T ss_pred eecceeeccCCCCHHHHHHHHHh
Confidence 345666654 6666665554443
No 418
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=28.46 E-value=4.3e+02 Score=23.64 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=18.5
Q ss_pred HHH-HHHHHHHHHHHHHHhhhhhhhc--ccCChhHHHH
Q psy4795 95 SVG-YVMICFGVVNAICSLLFGTLMK--FIGRSPLMAL 129 (285)
Q Consensus 95 ~~G-~v~~~~gv~~~i~s~l~G~LsD--riGrk~~i~~ 129 (285)
..| .......+...+......++.+ +.+.-.+...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~ 181 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAY 181 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHH
Confidence 446 3444555555666666666655 5554444433
No 419
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.38 E-value=35 Score=24.78 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy4795 223 VTGFCGYVI 231 (285)
Q Consensus 223 v~~~v~~~~ 231 (285)
+++.++++.
T Consensus 13 ~~~~~~~v~ 21 (85)
T TIGR02209 13 LVSAISVVS 21 (85)
T ss_pred HHHHHHHHH
Confidence 333333333
No 420
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.24 E-value=1.4e+02 Score=27.58 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVEVRH 236 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~ 236 (285)
++++.++-++-|+++.||.
T Consensus 265 IliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455566666665554
No 421
>PTZ00046 rifin; Provisional
Probab=28.22 E-value=2e+02 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
++++.++-++-|+++.||.+||-
T Consensus 324 IvVIVLIMvIIYLILRYRRKKKM 346 (358)
T PTZ00046 324 IVVIVLIMVIIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhcchh
Confidence 33444456777888777665553
No 422
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=28.16 E-value=1.5e+02 Score=23.68 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=32.3
Q ss_pred cCCCCcchHHHHhhhhhhhhhh-----ccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCCh
Q psy4795 68 PHPNNPKIFFTISGLWGAYISC-----ALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRS 124 (285)
Q Consensus 68 ~~~~~p~l~~~~~~ft~~Y~~~-----~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk 124 (285)
|++.+.=+.|...-|.|.-+.- ..+.-.-|.+-...+++..+.+...=++.+|+||+
T Consensus 57 ~~~te~Gi~FW~aMYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~r~g~~ 118 (125)
T TIGR00807 57 PQVTQFGVGFWSAMYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWISKSSYG 118 (125)
T ss_pred ChhHHhHHHHHHccHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444445556656666654421 12222344566677777777777666677777765
No 423
>COG1836 Predicted membrane protein [Function unknown]
Probab=27.86 E-value=2.3e+02 Score=25.46 Aligned_cols=25 Identities=12% Similarity=-0.006 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
++.++..-..+..+..+++++|+.+
T Consensus 57 fllll~Ff~~g~l~Tk~~~~~K~~~ 81 (247)
T COG1836 57 FLLLLIFFALGSLATKYKYEEKEAL 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555666667666655543
No 424
>PF15345 TMEM51: Transmembrane protein 51
Probab=27.78 E-value=27 Score=31.02 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.6
Q ss_pred HHHHhhhhhh
Q psy4795 160 LWGVGDAVWQ 169 (285)
Q Consensus 160 l~Gig~g~~~ 169 (285)
.+|+-+.+|+
T Consensus 18 ~LGiiM~vW~ 27 (233)
T PF15345_consen 18 ALGIIMIVWN 27 (233)
T ss_pred HHhhHheeee
Confidence 3444444444
No 425
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.48 E-value=74 Score=27.04 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.6
Q ss_pred hHHHHHHHHH
Q psy4795 188 FSNFRLWESV 197 (285)
Q Consensus 188 fs~~~l~~~l 197 (285)
...+|.-||+
T Consensus 95 ~~~fraQRN~ 104 (192)
T PF05529_consen 95 AKKFRAQRNM 104 (192)
T ss_pred HHHHHHHHhH
Confidence 4455666664
No 426
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.05 E-value=92 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhHHhhh
Q psy4795 227 CGYVIVEVRHMMKARRQK 244 (285)
Q Consensus 227 v~~~~~e~~~~~~~~~~~ 244 (285)
+...++..+.|||.||+.
T Consensus 48 VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 48 VILWFVCCKKRKRSRRPI 65 (94)
T ss_pred HHHHHHHHHHhhhccCCc
Confidence 334455667777777643
No 427
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=26.96 E-value=3.7e+02 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=14.0
Q ss_pred ccccchhHhHHHHHHHHH-HHHHH
Q psy4795 180 FRRNKEAAFSNFRLWESV-GFVIA 202 (285)
Q Consensus 180 fp~~~~~afs~~~l~~~l-G~~ig 202 (285)
+....|+|-+.-..+++. |..-+
T Consensus 133 f~GGhGTAaa~g~~fe~~~G~~~a 156 (368)
T PF03616_consen 133 FTGGHGTAAAFGPTFEELYGWEGA 156 (368)
T ss_pred ccCCccHHHHHHHHHHHhcChhhh
Confidence 334457777777777776 55433
No 428
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=26.95 E-value=1e+02 Score=26.58 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHM 237 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~ 237 (285)
+.+...++++++++-...-+|.+
T Consensus 147 fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 147 FELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 55566677888888877765543
No 429
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=26.88 E-value=7.1e+02 Score=25.59 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHHH-HHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccCC-CCcchHHHHhhhhhhhhhhccch
Q psy4795 16 SSVGYVMICFGVVNAI-CSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP-NNPKIFFTISGLWGAYISCALGV 93 (285)
Q Consensus 16 d~~G~il~~~gi~~~~-~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~~-~~p~l~~~~~~ft~~Y~~~~lg~ 93 (285)
.++|.+....|++-++ .+.-.|. .|....+..|++++..++..=...++|. +..-....-......|.+-.-..
T Consensus 7 ~~iG~~~l~lG~~fl~kya~~~g~----l~p~~Rv~~g~~~g~~l~~~g~~l~~k~~~~~~~~L~g~G~a~ly~t~~aa~ 82 (745)
T PF10101_consen 7 VRIGILVLLLGVVFLLKYAIDAGW----LGPAVRVALGAALGLALLAAGERLRRKGYRAFAQALAGGGIAVLYLTVFAAY 82 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc----CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777666 2222232 2223556677777776654443444442 22222233334444443332222
Q ss_pred hHHHHHH-HHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 94 SSVGYVM-ICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 94 ~~~G~v~-~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
..-+++- ...-+.+.+....+-.++.|...+.+..++.+--. ..|.+... +++|+...+....++..
T Consensus 83 ~~y~l~~~~~af~~~~~v~~~~~~la~r~~~~~la~l~l~gg~--~aP~l~~~-~~~~~~~L~~Y~~ll~~ 150 (745)
T PF10101_consen 83 HLYGLIPPPVAFALLALVTAAAVALALRYDSPALAVLALLGGF--LAPFLVST-GSGNPVFLFGYLLLLNA 150 (745)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhhcCC-CCCcHHHHHHHHHHHHH
Confidence 1111100 01113444555556679999988888777766422 22333332 24455555544444433
No 430
>KOG4294|consensus
Probab=26.63 E-value=2e+02 Score=28.18 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=24.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4795 185 EAAFSNFRLWESVGFVIAYAYSTHLCARMK 214 (285)
Q Consensus 185 ~~afs~~~l~~~lG~~ig~~~s~~l~~~~~ 214 (285)
..++++..+.-++|...|.++|..+..-..
T Consensus 441 ~~~~~~~~Lls~~GG~~GLf~G~Sv~t~~E 470 (520)
T KOG4294|consen 441 SKAYGFSDLLSDIGGQLGLFLGASVLTILE 470 (520)
T ss_pred hhhccHHHHHHHhcchhhhhhhhHHHHHHH
Confidence 578899999999999999988877644333
No 431
>KOG1647|consensus
Probab=26.41 E-value=99 Score=27.38 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy4795 223 VTGFCGYVIVEV 234 (285)
Q Consensus 223 v~~~v~~~~~e~ 234 (285)
+=.++.|+.-|.
T Consensus 180 lenTi~YI~sEL 191 (255)
T KOG1647|consen 180 LENTIAYIVSEL 191 (255)
T ss_pred hhhHHHHHHHHH
Confidence 457888888874
No 432
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=26.36 E-value=7.6e+02 Score=25.77 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=25.8
Q ss_pred hhhhhcc----cCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh
Q psy4795 114 FGTLMKF----IGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV 167 (285)
Q Consensus 114 ~G~LsDr----iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~ 167 (285)
.+-++|. -||.+=+.++.++.+++.+..-+..| .+|++....++.+++.++
T Consensus 43 a~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~---~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 43 AAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFG---KPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHH
Confidence 3557764 45555555555555555444444443 335555555555554443
No 433
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=26.29 E-value=3.5e+02 Score=23.37 Aligned_cols=50 Identities=8% Similarity=0.142 Sum_probs=25.7
Q ss_pred hhHhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 185 EAAFS-NFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVR 235 (285)
Q Consensus 185 ~~afs-~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~ 235 (285)
...++ ..-++--+|+.+|-.++.++..++-.++ ...+++..-.+.+.|..
T Consensus 33 ~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~i-g~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 33 NLIIAVISGLFIFISMLLGKFLAKFLPPKVTEIL-GAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 34444 3334445567777777766655433443 33444444455555554
No 434
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=26.20 E-value=1.4e+02 Score=23.18 Aligned_cols=9 Identities=11% Similarity=-0.167 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q psy4795 231 IVEVRHMMK 239 (285)
Q Consensus 231 ~~e~~~~~~ 239 (285)
|.+.+.++|
T Consensus 22 wr~~~rq~k 30 (107)
T PF15330_consen 22 WRMKQRQKK 30 (107)
T ss_pred HHHHhhhcc
Confidence 333344444
No 435
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=26.01 E-value=1.5e+02 Score=29.36 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 213 MKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 213 ~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
+++++.+++++..++..+++-++..||+|+..+
T Consensus 416 ~~i~l~~gv~l~~~Ii~~i~~~~~~r~~r~~~~ 448 (472)
T PF07253_consen 416 TSIWLVFGVLLSIMIIIIIALILMLRKKRQKAQ 448 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 445666666666666666666666555554333
No 436
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=25.87 E-value=3.7e+02 Score=25.46 Aligned_cols=12 Identities=8% Similarity=-0.136 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhh
Q psy4795 155 FTISGLWGVGDA 166 (285)
Q Consensus 155 ~~~~~l~Gig~g 166 (285)
...-...+++..
T Consensus 115 ~~~Pi~~~i~~~ 126 (416)
T cd01118 115 ILTPIVIALLRA 126 (416)
T ss_pred HHHHHHHHHHHH
Confidence 333444555544
No 437
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=25.66 E-value=99 Score=30.31 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=2.5
Q ss_pred Hhhhhhh
Q psy4795 111 SLLFGTL 117 (285)
Q Consensus 111 s~l~G~L 117 (285)
..+.-++
T Consensus 105 ~~l~k~l 111 (465)
T PF03606_consen 105 NLLIKPL 111 (465)
T ss_pred HHHHHHh
Confidence 3333333
No 438
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=25.57 E-value=7.1e+02 Score=25.13 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCh
Q psy4795 101 ICFGVVNAICSLLFGTLMKFIGRS 124 (285)
Q Consensus 101 ~~~gv~~~i~s~l~G~LsDriGrk 124 (285)
..+=.-++.-+|+-|...-|+.|-
T Consensus 318 iFYWaWWisWsPfVG~FIARISrG 341 (537)
T COG1292 318 VFYWAWWISWSPFVGMFIARISRG 341 (537)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCC
Confidence 334445566666666666665553
No 439
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=25.48 E-value=1.8e+02 Score=23.67 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q psy4795 227 CGYVIVEVR 235 (285)
Q Consensus 227 v~~~~~e~~ 235 (285)
+++...++.
T Consensus 19 ~G~AA~~~~ 27 (137)
T PF12868_consen 19 AGYAAHKYK 27 (137)
T ss_pred HHHHHHHHH
Confidence 556666655
No 440
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=25.45 E-value=5.4e+02 Score=25.89 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=19.2
Q ss_pred HHHHHHH-HHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795 127 MALGFIV-HCCLIWILVVWRPHPNNPKIFFTISGLWGV 163 (285)
Q Consensus 127 i~~g~~l-~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi 163 (285)
++.|.++ ..++++..++..|+-++++.+.+..+..-+
T Consensus 392 ~~~G~l~~~~~a~~~~~~vlP~~~~f~~L~l~l~~~l~ 429 (650)
T PF04632_consen 392 FLIGALLGAVLAFLYLFFVLPHLDGFPLLALVLAPFLF 429 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHH
Confidence 3344433 334444556667776776665554444333
No 441
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=25.44 E-value=1.2e+02 Score=28.61 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
.++.+++++++.+=|.+-.|++.|+-|.
T Consensus 187 ~~~~~~~~via~~D~~~qr~~~~k~lkM 214 (342)
T TIGR01404 187 LVCLGFFLVVGLADFAFQRYLFMKDLKM 214 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555666677777777777776665543
No 442
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.28 E-value=1.2e+02 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.104 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
..+++++++++.+=|.+-.+++.|+.|.
T Consensus 195 ~~~~~~~~via~~D~~~qr~~~~k~lkM 222 (359)
T PRK05702 195 LLVVLALLVIAAIDVPFQRWQYLKKLKM 222 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4456666777888888777777666544
No 443
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=1.8e+02 Score=28.77 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy4795 208 HLCARMKLYVMGVVLVTGFCGYVI 231 (285)
Q Consensus 208 ~l~~~~~l~il~~~lv~~~v~~~~ 231 (285)
-++-.|....+++++.+|++...+
T Consensus 52 ~Vy~SwWfl~iivlL~VSLv~C~l 75 (478)
T COG1333 52 DVYSSWWFLAIIVLLGVSLVGCSL 75 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455566777777888888777665
No 444
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=25.24 E-value=1.2e+02 Score=27.60 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=9.9
Q ss_pred HHHHHhhhhhhhcccCChhH
Q psy4795 107 NAICSLLFGTLMKFIGRSPL 126 (285)
Q Consensus 107 ~~i~s~l~G~LsDriGrk~~ 126 (285)
+....--.=+.+++=.-|++
T Consensus 117 ~s~~~h~adk~ae~gn~k~i 136 (265)
T TIGR00822 117 TVLFQHAADKAAKEANTAAI 136 (265)
T ss_pred HHHHHHHHHHHHHhCCHHHh
Confidence 44444555566555333444
No 445
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=25.24 E-value=1.7e+02 Score=27.99 Aligned_cols=10 Identities=0% Similarity=-0.369 Sum_probs=4.6
Q ss_pred ccccceeeec
Q psy4795 171 QVNGLYGTLF 180 (285)
Q Consensus 171 ~~~ali~~~f 180 (285)
.|+..+.+.+
T Consensus 130 ~N~~Av~~al 139 (378)
T PF05684_consen 130 VNFVAVAEAL 139 (378)
T ss_pred hHHHHHHHHH
Confidence 3444454544
No 446
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.23 E-value=2.4e+02 Score=25.20 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
..--|+|.|...+...+.+...+|+..++..+.-...+-+..+.|...+-++
T Consensus 178 AMasGvGSgSMMaAa~~aL~~~~P~~a~~i~A~AaaSNllt~~~G~Y~~ifi 229 (241)
T PF11299_consen 178 AMASGVGSGSMMAAASGALAAAYPEMADQILAFAAASNLLTSVTGLYMSIFI 229 (241)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455899999999999999999998665554444444444555555444443
No 447
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=25.19 E-value=4.2e+02 Score=22.43 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=13.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhH
Q psy4795 15 VSSVGYVMICFGVVNAICSLLFGTLM 40 (285)
Q Consensus 15 ~d~~G~il~~~gi~~~~~a~~~G~l~ 40 (285)
-||.........+..++.+...+.+.
T Consensus 44 ~~~~~~~~~~~~i~~F~~G~~~~~~i 69 (209)
T PF06912_consen 44 GDWSGALRYLLAILSFILGAFLAGLI 69 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555544
No 448
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=25.09 E-value=2.6e+02 Score=21.51 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARRQ 243 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~~ 243 (285)
.+....++++....=.++||+++|++|+-
T Consensus 61 ~~~~~~f~~~~~~~ra~mEWKy~resK~y 89 (110)
T PF13789_consen 61 YILIFLFLIILFCFRAFMEWKYDRESKEY 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 55566667777788889999998877653
No 449
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.09 E-value=2.4e+02 Score=26.76 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
++++.++-++-|+++.||.+||-
T Consensus 319 IvvIVLIMvIIYLILRYRRKKKM 341 (353)
T TIGR01477 319 ILIIVLIMVIIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHHHHHHHHHHhhhcchh
Confidence 33344455777888877665553
No 450
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=25.01 E-value=1.2e+02 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
..+++++++++.+=|.+=.|++.|+-|.
T Consensus 188 ~~~~~~~~via~~D~~~qr~~~~k~lkM 215 (349)
T PRK12721 188 GGLLACYLVFGILDYSFQRYKIMKQLKM 215 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3445566677777777777766665543
No 451
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=25.01 E-value=1.8e+02 Score=23.39 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhHHh
Q psy4795 214 KLYVMGVVLVTGFCGYVIVEV--RHMMKARR 242 (285)
Q Consensus 214 ~l~il~~~lv~~~v~~~~~e~--~~~~~~~~ 242 (285)
.+||++++.+.++....++-- |.+|++++
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSKK~E~s 74 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSKKREHS 74 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 367777776666666665553 44444433
No 452
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=24.97 E-value=2.1e+02 Score=26.87 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4795 213 MKLYVMGVVLVTGFCGYVIV 232 (285)
Q Consensus 213 ~~l~il~~~lv~~~v~~~~~ 232 (285)
..+++.++..++--...=++
T Consensus 232 ~sl~l~~~~~l~~~l~~Rwl 251 (340)
T PF12794_consen 232 LSLYLLLGWLLVYQLILRWL 251 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444333
No 453
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=24.77 E-value=49 Score=30.39 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4795 215 LYVMGVVLVTGFCGYV 230 (285)
Q Consensus 215 l~il~~~lv~~~v~~~ 230 (285)
+.|+.++.+++++..+
T Consensus 6 LIIvGaiaI~aLl~hG 21 (284)
T TIGR02205 6 LIIVGILAIAALLFHG 21 (284)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3444444444444444
No 454
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=24.48 E-value=5.6e+02 Score=25.77 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4795 215 LYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e 233 (285)
..+.+++++...+..++..
T Consensus 133 ~ei~iGi~~a~~v~~l~~P 151 (650)
T PF04632_consen 133 LEILIGILCATLVSMLFFP 151 (650)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3444455544455544443
No 455
>PRK11246 hypothetical protein; Provisional
Probab=24.08 E-value=1e+02 Score=27.20 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4795 221 VLVTGFCGYVIVEVRHM 237 (285)
Q Consensus 221 ~lv~~~v~~~~~e~~~~ 237 (285)
+++..+++++...-..+
T Consensus 169 ll~al~iG~lL~~~l~~ 185 (218)
T PRK11246 169 LLLALAIGIVLTRTLLQ 185 (218)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33334444444444333
No 456
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.73 E-value=1.3e+02 Score=28.48 Aligned_cols=28 Identities=14% Similarity=-0.088 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
.++++++++++.+=|.+-.|++.|+-|.
T Consensus 197 ~~~~~~~~via~~D~~~q~~~~~k~lkM 224 (358)
T PRK13109 197 SAVAIATIVLVALDLVWARFHWRRSLRM 224 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4556666778888888777777666543
No 457
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.49 E-value=2e+02 Score=21.60 Aligned_cols=17 Identities=18% Similarity=-0.105 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVEV 234 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~ 234 (285)
..++.++..-.++-+..
T Consensus 11 ~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444445543
No 458
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=23.42 E-value=2.1e+02 Score=29.61 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=7.8
Q ss_pred HHHHHhhhhhhcccccce
Q psy4795 159 GLWGVGDAVWQTQVNGLY 176 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali 176 (285)
.++.+|||+. +|+++++
T Consensus 225 tlLTIGDGLV-sQIPALl 241 (678)
T TIGR01398 225 TILTIGDGLV-AQIPALI 241 (678)
T ss_pred heeeechhHH-HHHHHHH
Confidence 3444555544 3444443
No 459
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.24 E-value=2.2e+02 Score=20.57 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhHhhh
Q psy4795 25 FGVVNAICSLLFGTLMKFI 43 (285)
Q Consensus 25 ~gi~~~~~a~~~G~l~~~~ 43 (285)
.-...++.|+..|+..+.+
T Consensus 16 il~~~~iisfi~Gy~~q~~ 34 (76)
T PF06645_consen 16 ILIISAIISFIVGYITQSF 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555666677755543
No 460
>KOG1623|consensus
Probab=23.21 E-value=1.2e+02 Score=27.17 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=19.5
Q ss_pred HHhhhhhhcccccceeeeccccc-h-hHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 162 GVGDAVWQTQVNGLYGTLFRRNK-E-AAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 162 Gig~g~~~~~~~ali~~~fp~~~-~-~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
|+--.++.+|...+-.. ..++. + -.|.+ .++..+-++.=.+++-.+
T Consensus 134 ~~nI~~~~sPL~~m~~V-IktkSvE~mPf~L-s~a~fl~a~~W~lYGlli 181 (243)
T KOG1623|consen 134 VFNISMFAAPLSVIRKV-IKTKSVEYMPFPL-SFALFLVAVQWLLYGLLI 181 (243)
T ss_pred hhhHHhhhccHHhhhhh-eecCceeeechHH-HHHHHHHHHHHHHHHHHh
Confidence 34444455555555422 22222 2 22333 445555444444555443
No 461
>KOG1822|consensus
Probab=23.11 E-value=1.8e+02 Score=33.75 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.7
Q ss_pred HHhcCccCCcccccccCcccccc
Q psy4795 261 KAAQVVEETDDERDDIDDEIIVT 283 (285)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
|...++.|++|||++.|||++-+
T Consensus 1218 e~s~~kd~~~~~~~~~dDdt~~~ 1240 (2067)
T KOG1822|consen 1218 ELSGEKDEEDEEQESGDDDTVLT 1240 (2067)
T ss_pred cccccccccchhhcccchhhHHh
Confidence 34777888889999999998754
No 462
>PF15102 TMEM154: TMEM154 protein family
Probab=23.10 E-value=26 Score=28.88 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4795 217 VMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 217 il~~~lv~~~v~~~~~e 233 (285)
++++++++..++..+..
T Consensus 66 VLLvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYY 82 (146)
T ss_pred HHHHHHHHHHHHheeEE
Confidence 44445555555544443
No 463
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.82 E-value=72 Score=22.73 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4795 215 LYVMGVVLVTGFCGYVIVEV 234 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~ 234 (285)
+.+.+++.+++.+.|.+..+
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45566777788887776543
No 464
>PLN03151 cation/calcium exchanger; Provisional
Probab=22.80 E-value=8.6e+02 Score=25.15 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=6.5
Q ss_pred hhhhcccCChhHH
Q psy4795 115 GTLMKFIGRSPLM 127 (285)
Q Consensus 115 G~LsDriGrk~~i 127 (285)
-.++++++-.+.+
T Consensus 167 ~~Is~~L~lse~v 179 (650)
T PLN03151 167 EKLSKLLRLPPTV 179 (650)
T ss_pred HHHHHHhCCCHHH
Confidence 3455555544443
No 465
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.78 E-value=3.6e+02 Score=20.74 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhc-ccCChhHHHHHHHH
Q psy4795 108 AICSLLFGTLMK-FIGRSPLMALGFIV 133 (285)
Q Consensus 108 ~i~s~l~G~LsD-riGrk~~i~~g~~l 133 (285)
++.+.+.|+..| ++|.++...+.+++
T Consensus 56 il~G~~lG~WLD~~~~t~~~~tl~~ll 82 (100)
T TIGR02230 56 TLLGVAVGIWLDRHYPSPFSWTLTMLI 82 (100)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 334444566666 57766654444333
No 466
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=22.67 E-value=70 Score=26.20 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q psy4795 226 FCGYVIVE 233 (285)
Q Consensus 226 ~v~~~~~e 233 (285)
+.+|+++.
T Consensus 24 VggYiLlR 31 (140)
T PF07543_consen 24 VGGYILLR 31 (140)
T ss_pred hhHHHHHH
Confidence 34555554
No 467
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.65 E-value=6.5e+02 Score=23.71 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhhhcccccceeeeccccc-hhH
Q psy4795 156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAA 187 (285)
Q Consensus 156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~a 187 (285)
++.++.|++.+.|...++.++.-.+++.. +..
T Consensus 8 ~~~l~~~~~~~~~~~~~~Gyv~i~~~~~~ie~s 40 (398)
T PRK10747 8 FVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETS 40 (398)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECCEEEEeh
Confidence 44555666667777777777777776655 443
No 468
>KOG0843|consensus
Probab=22.57 E-value=62 Score=27.75 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=8.1
Q ss_pred ccchhHhHHHHHHH
Q psy4795 182 RNKEAAFSNFRLWE 195 (285)
Q Consensus 182 ~~~~~afs~~~l~~ 195 (285)
++..++|+.-++.+
T Consensus 103 kr~RT~ft~~Ql~~ 116 (197)
T KOG0843|consen 103 KRIRTAFTPEQLLK 116 (197)
T ss_pred CccccccCHHHHHH
Confidence 33467777655543
No 469
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=22.54 E-value=3.8e+02 Score=20.97 Aligned_cols=27 Identities=4% Similarity=0.087 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhh
Q psy4795 220 VVLVTGFCGYVIVEVRHMMKARRQKRL 246 (285)
Q Consensus 220 ~~lv~~~v~~~~~e~~~~~~~~~~~~~ 246 (285)
...++-.+.+....+..||+.||.+++
T Consensus 109 ~fi~IYliIw~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 109 IFIIIYLIIWLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556666666666777777766653
No 470
>COG1289 Predicted membrane protein [Function unknown]
Probab=22.45 E-value=8.5e+02 Score=24.96 Aligned_cols=11 Identities=18% Similarity=-0.254 Sum_probs=5.6
Q ss_pred hhhhhhhcccC
Q psy4795 112 LLFGTLMKFIG 122 (285)
Q Consensus 112 ~l~G~LsDriG 122 (285)
..++.+++++.
T Consensus 50 ~~~~~~~~~~~ 60 (674)
T COG1289 50 DSGAVLSKGLK 60 (674)
T ss_pred CCCCHHHhhHH
Confidence 34555555553
No 471
>PF03905 Corona_NS4: Coronavirus non-structural protein NS4; InterPro: IPR005603 This non-structural protein does not appear to be essential for viral growth in tissue culture and its physiological role is unknown.
Probab=22.13 E-value=34 Score=21.93 Aligned_cols=16 Identities=25% Similarity=0.872 Sum_probs=13.7
Q ss_pred cccccceeeecccchH
Q psy4795 3 DFTQAYISCALGVSSV 18 (285)
Q Consensus 3 ~f~~~~~~c~~g~d~~ 18 (285)
.+|+.|..|+.|+|..
T Consensus 20 ~~T~VYLG~s~G~DtS 35 (45)
T PF03905_consen 20 VYTTVYLGCSIGIDTS 35 (45)
T ss_pred eEEEEEeccccccccc
Confidence 4789999999999964
No 472
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.70 E-value=3.3e+02 Score=23.10 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy4795 224 TGFCGYVIV 232 (285)
Q Consensus 224 ~~~v~~~~~ 232 (285)
++.++++.+
T Consensus 39 ~~~~~~~~~ 47 (199)
T PF10112_consen 39 IGAVAFAVV 47 (199)
T ss_pred HHHHHHHHH
Confidence 344444443
No 473
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=21.63 E-value=3.4e+02 Score=24.21 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhhhhHH
Q psy4795 193 LWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 193 l~~~lG~~ig~~~s~~l~~~ 212 (285)
+..-++-++.++.+.|+..+
T Consensus 57 la~liAgA~SMa~GeYlS~~ 76 (241)
T cd02435 57 LAELAAGAISMGLGGYLAAK 76 (241)
T ss_pred HHHHHHHHHHHHHhhHHHhh
Confidence 33334444444444444443
No 474
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.62 E-value=1.7e+02 Score=28.07 Aligned_cols=29 Identities=17% Similarity=-0.075 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 214 KLYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 214 ~l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
-.++.+++++++.+=|.+-.|++.|+-|.
T Consensus 194 ~~~~~~~~~via~~D~~~qr~~~~k~lkM 222 (386)
T PRK12468 194 GLVVVLGLSPMVGFDVFYQITSHIKKLRM 222 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45566777788888888888777666543
No 475
>COG4769 Predicted membrane protein [Function unknown]
Probab=21.57 E-value=3.9e+02 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhhhhcccCChhHHH
Q psy4795 102 CFGVVNAICSLLFGTLMKFIGRSPLMA 128 (285)
Q Consensus 102 ~~gv~~~i~s~l~G~LsDriGrk~~i~ 128 (285)
.++....+.+.+.-++..++|+|.+-.
T Consensus 81 l~sfaG~i~S~L~m~~l~~f~~k~~S~ 107 (181)
T COG4769 81 LYSFAGAILSTLFMYFLYQFGPKYLSL 107 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEee
Confidence 444555555566666777777666533
No 476
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.48 E-value=2.7e+02 Score=18.91 Aligned_cols=7 Identities=14% Similarity=0.150 Sum_probs=2.7
Q ss_pred HHHHHhH
Q psy4795 234 VRHMMKA 240 (285)
Q Consensus 234 ~~~~~~~ 240 (285)
++.+++-
T Consensus 44 ~~~r~~~ 50 (68)
T PF06305_consen 44 LRLRRRI 50 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 477
>KOG1237|consensus
Probab=21.42 E-value=82 Score=31.85 Aligned_cols=60 Identities=12% Similarity=-0.011 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795 149 NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH 208 (285)
Q Consensus 149 ~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~ 208 (285)
-+.++.+--.+++|+++........-..-+.+|++. ..+.|++-+...+|..+..++.+.
T Consensus 456 mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~ 516 (571)
T KOG1237|consen 456 MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSL 516 (571)
T ss_pred eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777899999999998888888888889887 888889999999998888777644
No 478
>PRK06298 type III secretion system protein; Validated
Probab=21.27 E-value=1.6e+02 Score=27.91 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795 215 LYVMGVVLVTGFCGYVIVEVRHMMKARR 242 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~~e~~~~~~~~~ 242 (285)
.++.+++++++.+=|.+-.|++.|+-|.
T Consensus 189 ~~~~~~~~via~~D~~~qr~~~~k~lkM 216 (356)
T PRK06298 189 TSIGIFFLVVAVLDLVYQRHNFAKELKM 216 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4455667778888888877777666543
No 479
>PRK11111 hypothetical protein; Provisional
Probab=21.24 E-value=3.6e+02 Score=23.55 Aligned_cols=113 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 153 IFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIV 232 (285)
Q Consensus 153 ~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~ 232 (285)
.+.....++.+-|-.-+.+....+.+-.++++.+.-+.....-.....+.+++.+-.-.+..=.-+-.+-+.+-+..+.+
T Consensus 10 ~l~~~~~Lf~iinPig~ipiflslt~~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~i 89 (214)
T PRK11111 10 YIKFFIGLFALVNPVGILPVFISMTSHQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTI 89 (214)
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccccccCcccccccC
Q psy4795 233 EVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEIIVTHL 285 (285)
Q Consensus 233 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (285)
-++.-+.++++++.+ ++|++|.+++ ||+.++.|
T Consensus 90 al~Ml~g~~~~~~~~------------------~~~~~~~~~~--~~iaivPL 122 (214)
T PRK11111 90 AMSMISGKLGEDKQN------------------KQEKSETAVR--ESIGVVPL 122 (214)
T ss_pred HHHHhCCCCCccccc------------------cccccccccc--cceeeecc
No 480
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=21.23 E-value=1.5e+02 Score=24.51 Aligned_cols=68 Identities=9% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccc
Q psy4795 204 AYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDER 273 (285)
Q Consensus 204 ~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (285)
.+.+.+. ...+.+.+++++++++.-.+.+...+.--.|+ .++.+.+.+++.....+.+++..+..+++
T Consensus 3 ~ldp~i~-~~~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 70 (168)
T PF01956_consen 3 VLDPLIR-WVLLPITIVVFLIAILRGLISELLQKFLIDRK-MDKYQKRMKEFQKRYRELRKNGDFKKPKK 70 (168)
T ss_pred cccchHh-hhhcCHHHHHHHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHHHcCCccCHHH
No 481
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=21.18 E-value=6.3e+02 Score=24.74 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCChhHHH--HHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccce
Q psy4795 99 VMICFGVVNAICSLLFGTLMKFIGRSPLMA--LGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLY 176 (285)
Q Consensus 99 v~~~~gv~~~i~s~l~G~LsDriGrk~~i~--~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali 176 (285)
+.+...++-.+...++|+...|.||.+... .+.++..+..+..+......++...-.. ..+...+
T Consensus 119 i~lg~sl~~~l~~~fG~~~~~r~~~~k~~~r~~~~il~iv~i~~if~~~~~~~~~v~~~~-------------~~i~~~y 185 (449)
T PF09847_consen 119 ILLGHSLGLLLFILFGGRIVGRFSRSKSLARNFGIILFIVFIFGIFYIIQYNQDYVYEMI-------------AEIFVKY 185 (449)
T ss_pred HHHHHHHHHHHHHHhcceeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------HHHHhhh
Q ss_pred eeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHH
Q psy4795 177 GTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIA 256 (285)
Q Consensus 177 ~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.-.+| +..++.........+.+.-..+....|.....|..++- +++++.
T Consensus 186 ~~~~p---------------------~~~~~i~~~~~~~~lsl~y~~~~~~~~~~~~~rl~~~l-~~~~~~--------- 234 (449)
T PF09847_consen 186 SIFFP---------------------FSFSWIYKPFKSLLLSLIYLAIFFILYFYLIKRLWERL-PESEKV--------- 234 (449)
T ss_pred Hhhhh---------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccee---------
Q ss_pred HHHHHHhcCccCCcccccc
Q psy4795 257 AAEAKAAQVVEETDDERDD 275 (285)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~ 275 (285)
+.+..++++.+..
T Consensus 235 ------~~~~~~~~~~k~~ 247 (449)
T PF09847_consen 235 ------KSKVKTKFKIKIR 247 (449)
T ss_pred ------ecccceeeccccC
No 482
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=21.15 E-value=68 Score=25.35 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhcC-----ChHHHHHHHHHHHH-------------------hcCccCCcccc
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKARRQKRLAE-----DPKAAAIAAAEAKA-------------------AQVVEETDDER 273 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 273 (285)
.+..+++-++-|+.+.-|.+.|...-++... +-.+..++.-++++ -.++..+||++
T Consensus 65 fiatliillviffviy~re~~~~~~gt~~d~~layr~ltrkkl~~ha~kkqniyeripyrp~rq~d~~p~~~~~~~dd~e 144 (150)
T PF06084_consen 65 FIATLIILLVIFFVIYSREEEKNNNGTEVDQCLAYRSLTRKKLEQHASKKQNIYERIPYRPCRQNDNSPPIEPNGTDDEE 144 (150)
T ss_pred HHHHHHHHHHHhheeEeccccccCCCceechhhHHHHHHHHHHHHHHHhhcchhhhcCCCcccccCCCCcccCCCCCccc
Q ss_pred cccCc
Q psy4795 274 DDIDD 278 (285)
Q Consensus 274 ~~~~~ 278 (285)
|+-|+
T Consensus 145 ~ed~~ 149 (150)
T PF06084_consen 145 DEDDD 149 (150)
T ss_pred ccccC
No 483
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=21.14 E-value=1.2e+02 Score=28.99 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhh-hcccccceeeeccccc-hhHhH--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy4795 156 TISGLWGVGDAVW-QTQVNGLYGTLFRRNK-EAAFS--NFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVI 231 (285)
Q Consensus 156 ~~~~l~Gig~g~~-~~~~~ali~~~fp~~~-~~afs--~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~ 231 (285)
....+.|+..+.. +..+.-+ ..+|... +.+-+ +..++..-..+....+-........+..++++++-..+++..
T Consensus 253 ~isgl~GITEpAIPFgv~~p~--r~i~a~~iGsaVgGal~~~~gv~~~ap~gGi~~ip~~~~~l~~iiailig~vvtavl 330 (359)
T PRK10478 253 LVMGCVGVTEGAIPFAAADPL--RVIPSIMVGSVCGAVTAALFGAQCYAGWGGLIVLPVVDGKLGYIAAVAVGAVVTAVC 330 (359)
T ss_pred HHHHHHhcCccchHHHHhcch--HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccccccCccc
Q psy4795 232 VEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280 (285)
Q Consensus 232 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (285)
.....++.+| +++.+|++|+ |+|.|.
T Consensus 331 ~~~~k~~~~~---------------------~~~~~~~~~~--~i~~~~ 356 (359)
T PRK10478 331 VNVLKSLARK---------------------NGSSTDEKED--DLDLDF 356 (359)
T ss_pred HHHHcccccc---------------------cccccccccc--cccccc
No 484
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=20.96 E-value=8.1e+02 Score=24.16 Aligned_cols=181 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcchHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhc------ccC
Q psy4795 49 MALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMK------FIG 122 (285)
Q Consensus 49 ~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~~~~ft~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsD------riG 122 (285)
+..|++-.++..+.+..+.+.+-..+.+....... +-..+-=++|.+-+-+.|+-.| .+.
T Consensus 103 i~GGlIGg~l~~~~y~r~~ki~~~~~~D~~ap~l~--------------lGqaiGRiGnF~Nge~yG~pT~lPWgv~~f~ 168 (460)
T PRK13108 103 IWGAVTLGVMGAWIGCRRCGIPLPVLLDAVAPGVV--------------LAQAIGRLGNYFNQELYGRETTMPWGLEIFY 168 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccccCCCCCCceeeeecc
Q ss_pred ------------------------ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceee
Q psy4795 123 ------------------------RSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGT 178 (285)
Q Consensus 123 ------------------------rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~ 178 (285)
|.|+-+--.++..+.+++++++..+
T Consensus 169 ~~~~~~~~~p~~~~g~~~g~~~~~~HPTqLYEsi~~lllf~iLl~l~rk------------------------------- 217 (460)
T PRK13108 169 RRDPSGFDVPNSLDGVSTGQVAFVVQPTFLYELIWNVLVFVALIYIDRR------------------------------- 217 (460)
T ss_pred ccccccccccccccccccCcCCCCcCchHHHHHHHHHHHHHHHHHHHhc-------------------------------
Q ss_pred eccccchhHhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHH
Q psy4795 179 LFRRNKEAAFSNFRLWESVGFVIAYAYST-----HLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAA 253 (285)
Q Consensus 179 ~fp~~~~~afs~~~l~~~lG~~ig~~~s~-----~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~ 253 (285)
.+.+.+..|++|-++-.++=.+-=++-. ...+++-.++.+.+.+++++.+ ++.+|+++++.......-..
T Consensus 218 -~~~~~G~lf~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~----~~~~~~~~~~~~~~~~~~~~ 292 (460)
T PRK13108 218 -FIIGHGRLFGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYI----ILAPKGREAPGALRGSEYVV 292 (460)
T ss_pred -cCCCCchHHHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHH----HHhhccCCCccccCCccccc
Q ss_pred HHHHHHHHHhcCccCCcccccccCcc
Q psy4795 254 AIAAAEAKAAQVVEETDDERDDIDDE 279 (285)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
.-+++..++...+.++.+..++-...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (460)
T PRK13108 293 DEALEREPAELAAAAVASAASAVGPV 318 (460)
T ss_pred CcccCCCCCCCCCcccccccCCCCCC
No 485
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=20.95 E-value=6.9e+02 Score=23.37 Aligned_cols=146 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred hhhcccCChhHHHHHHHHHHHHHHH---HHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeee-ccccc-hhHhHH
Q psy4795 116 TLMKFIGRSPLMALGFIVHCCLIWI---LVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTL-FRRNK-EAAFSN 190 (285)
Q Consensus 116 ~LsDriGrk~~i~~g~~l~~i~~~~---l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~-fp~~~-~~afs~ 190 (285)
.+++|.| ..+.|......+-.+ .........+..+..--...--+++=..-.-...+++.. .+++. ....+.
T Consensus 42 ~lA~~~g---~~vggl~~~~~gt~pEL~vsi~A~~~g~~~i~~gnivGS~i~NllLilGls~liggl~~~~q~~~~~~a~ 118 (349)
T TIGR00378 42 ELADKAG---PTIGGLLNATFGNAVELIVSIIALKEGLVRIVQASLTGSLLGNLLLVLGLCFFFGGLNYKQQTFNQTAAR 118 (349)
T ss_pred HHHHHcC---chHHHHHHHhhccHHHHHHHHHHHHcCChhhhHHHHHHHHHHhHHHHHHHHHHHhccccceeecCHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHHHHHH
Q psy4795 191 FRLWESVGFVIAYAYSTHL----------CARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEA 260 (285)
Q Consensus 191 ~~l~~~lG~~ig~~~s~~l----------~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (285)
.+...-+..++...+-+.. .....-.....++++..+.|.+...+.+|+..+.++.+++
T Consensus 119 ~~~~ll~la~~~l~lp~~~~~~~~~~~~~~~~~ls~~~aiill~lY~~~L~~~l~~h~~~f~~~~~~~~----------- 187 (349)
T TIGR00378 119 TNSSLLAIACVALLIPAARATLSHGKEDGKILNLSRGTSIVIIIVYVLFLYFQLGTHHALYEQQEAETD----------- 187 (349)
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhCCcccccc-----------
Q ss_pred HHhcCccCCcccccccC
Q psy4795 261 KAAQVVEETDDERDDID 277 (285)
Q Consensus 261 ~~~~~~~~~~~~~~~~~ 277 (285)
+.+++++++++.+.+
T Consensus 188 --~~~~~~~~~~~~~~~ 202 (349)
T TIGR00378 188 --EVMETIERNPHHSLS 202 (349)
T ss_pred --ccccccccccccccc
No 486
>PRK01637 hypothetical protein; Reviewed
Probab=20.85 E-value=2.4e+02 Score=25.47 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCccccc
Q psy4795 210 CARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERD 274 (285)
Q Consensus 210 ~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (285)
....-..+++=+-+.+.+..+=.|......++|+.+ ++.|+||+||.|.
T Consensus 238 slg~vi~lllWlyl~~~ilL~Gaelna~~~~~~~~~----------------~~~~~~~~~~~~~ 286 (286)
T PRK01637 238 ALAVIPILFVWVYLSWCIVLLGAEITATLGEYRKLK----------------QAAEQEEDDEPKK 286 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cccccccccccCC
No 487
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.72 E-value=81 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795 212 RMKLYVMGVVLVTGFCGYVIVEVRHMMKA 240 (285)
Q Consensus 212 ~~~l~il~~~lv~~~v~~~~~e~~~~~~~ 240 (285)
+|-++++++++++.++..+....|.|+|+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc
No 488
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=20.72 E-value=1.3e+02 Score=21.61 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccccccCcc
Q psy4795 214 KLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279 (285)
Q Consensus 214 ~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
++-+++...+.|.+-...=|....|..-++++.... -+-++-.+.|-+-|+-|+|
T Consensus 3 hFaiLilavVaSAvVMAyPe~dsAk~gnqekeral~-----------V~vq~r~~g~adyd~yd~~ 57 (78)
T PF11714_consen 3 HFAILILAVVASAVVMAYPERDSAKDGNQEKERALK-----------VKVQERQSGDADYDEYDQD 57 (78)
T ss_pred hHHHHHHHHHHHHHHHhccccchhhhcchhhhhhhh-----------hhhhhcccccccccccccc
No 489
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=20.67 E-value=2.7e+02 Score=24.01 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 155 FTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 155 ~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e 233 (285)
++-.+++|.-||+.. ..+++........ ....-+.-+...++.+++.+.+.++..+.+- |
T Consensus 1 ~~r~~V~G~~DGlv~--~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~-----------------~ 61 (213)
T PF01988_consen 1 WLRDAVFGANDGLVT--TFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSER-----------------D 61 (213)
T ss_pred ChHHHHhhccchHHH--HHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------h
Q ss_pred HHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccc
Q psy4795 234 VRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDER 273 (285)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (285)
...++++|.+.+.+.+|..+.-+..+.-+++.-.+++-++
T Consensus 62 ~~~~e~~re~~e~~~~pe~e~~el~~iy~~~Gl~~~~a~~ 101 (213)
T PF01988_consen 62 LYEAEREREEWELENNPEEEKEELVEIYRAKGLSEEDAEE 101 (213)
T ss_pred HHHHHhHHHHHHHHhChHhHHHHHHHHHHHCCCCHHHHHH
No 490
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.64 E-value=4.2e+02 Score=25.68 Aligned_cols=166 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc---
Q psy4795 97 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN--- 173 (285)
Q Consensus 97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~--- 173 (285)
++++...---..+..-++-++.+|+|+++ ..-........+.+....|++......+....+.++++..-..+..
T Consensus 91 ~f~i~~al~ktgL~~Ria~~~l~~~g~~~--~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~~~i~~~~~~~~~~~~~ 168 (471)
T PF00939_consen 91 GFIIGAALEKTGLDKRIALWLLKRFGGSP--KGLLFAIMLAGLLLSFFIPSTTARAAPILLPILLSICEALGSKPSSKTP 168 (471)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHhCCch--heehhHhhHHHHHHhccCccHHHHHHHHHHHHHHhhhhcccchhhhhHH
Q ss_pred ------cceeeeccccchhHhHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q psy4795 174 ------GLYGTLFRRNKEAAFSNFRLWESVGFVIAYAY----STHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQ 243 (285)
Q Consensus 174 ------ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~----s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~ 243 (285)
-+++-.+....+.......-.+|. ...++.- ...=..+|-.+-....++...+.+.+..+.+++++++.
T Consensus 169 ~~~~~~l~l~~~~~a~~~g~~~~~g~~~n~-i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~~~~~~~ 247 (471)
T PF00939_consen 169 RNLGKALMLGIAFAASIGGMGTLTGSAPNL-IAAGFLESATGISISFLDWFIYALPPGIIMLVLMWLILYKLFKPDVKNL 247 (471)
T ss_pred HHHHHHHHHHHhhhccccccccccCCCchH-HHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q ss_pred hhhcCChHHHHHHHHHHHHhcCccCCcccc
Q psy4795 244 KRLAEDPKAAAIAAAEAKAAQVVEETDDER 273 (285)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (285)
++.+ +.++++.++...=+.+|+
T Consensus 248 ~~~~--------~~~~~~~~~lg~~s~~Ek 269 (471)
T PF00939_consen 248 PDGK--------EFIKKELKELGPMSKKEK 269 (471)
T ss_pred hhhH--------HHHHHHHHhcCCCchhHh
No 491
>PF13994 PgaD: PgaD-like protein
Probab=20.63 E-value=1.5e+02 Score=23.97 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHhhhhh-cCChHHHHHHHHHHHHhcCccCCcccccccCccccccc
Q psy4795 210 CARMKLYVMGVVLVTGFCGYVIVEV---RHMMKARRQKRL-AEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEIIVTH 284 (285)
Q Consensus 210 ~~~~~l~il~~~lv~~~v~~~~~e~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
...+-..-..+.++.+.+...|.++ |+++++||...+ .+++.-+..-..+.++-++--...---=+.||+.=++|
T Consensus 60 ~~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf~~~~rr~~~~~~~~~elA~~f~l~~~~l~~lr~~k~~~V~~d~~G~I~~ 138 (138)
T PF13994_consen 60 SLNTLQIYLLIALVNAVILILWAKYNRLRFRGRRRRRRPPPVSDEELARSFGLSPEQLQQLRQAKVLTVHHDDHGRIIH 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccCCCCCCHHHHHHHcCCCHHHHHHHHhCCeEEEEeCCCCCcCc
No 492
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=20.61 E-value=99 Score=24.88 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 216 YVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 216 ~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
.+.++++++..-...|..++.+||+||++.
T Consensus 87 lLs~GLmlL~~~alcW~~~~rkK~~kr~eS 116 (129)
T PF15099_consen 87 LLSLGLMLLACSALCWKPIIRKKKKKRRES 116 (129)
T ss_pred HHHHHHHHHHhhhheehhhhHhHHHHhhhh
No 493
>PLN00136 silicon transporter; Provisional
Probab=20.58 E-value=3e+02 Score=27.13 Aligned_cols=180 Identities=10% Similarity=-0.027 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcc
Q psy4795 92 GVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQ 171 (285)
Q Consensus 92 g~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~ 171 (285)
|+-..+..+--.|+.+.++..+. +.++. +|+-...+..+...++.+. +++.......-....++...-..+
T Consensus 71 gmmii~~~L~~tG~~~~ia~~l~-~~~~~-~~~ll~~l~~~ta~lSafl-------~N~~t~llm~Piv~~la~~~~~~p 141 (482)
T PLN00136 71 ATMVVGSYLKNAGMFKHLGRLLA-WRSQG-GRDLLCRVCVVTALASALF-------TNDTCCVVLTEFVLELAAERNLPA 141 (482)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH-HhcCC-hHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHcCCCc
Q ss_pred cccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh--------
Q psy4795 172 VNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQ-------- 243 (285)
Q Consensus 172 ~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~-------- 243 (285)
..-++...+-.|-+.......=-+|+=..-+.-++-.=.........+..++++.....+..++..+++.+.
T Consensus 142 ~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~~~~i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~~ 221 (482)
T PLN00136 142 KPFLLALASSANIGSSATPIGNPQNLVIAFNSKITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQME 221 (482)
T ss_pred HHHHHHHHHHHHHhhhhhhccccchheeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhhh
Q ss_pred -----hhhcCChHHHHHHHHHHHHhcCccCCcccccccCccc
Q psy4795 244 -----KRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280 (285)
Q Consensus 244 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (285)
.+..|....++...+.-.+..+.++++|++..+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (482)
T PLN00136 222 AVEEGRSPASAKSTKQQSPALLQAGLNGDGNGDMSSMMSENI 263 (482)
T ss_pred hhhcccccchhhhhhhhhhhhhhccccccccchhHHHhhccc
No 494
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=20.51 E-value=2.3e+02 Score=23.73 Aligned_cols=72 Identities=13% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhhhhcCChHHHHHHHHHHHHhcCccCCcc
Q psy4795 193 LWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKAR-RQKRLAEDPKAAAIAAAEAKAAQVVEETDD 271 (285)
Q Consensus 193 l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (285)
+...+|..+| .+.....+.-+..-+.-++-+.++-.+=||...|+++ |++++.|+ +...++..+
T Consensus 11 ils~~giv~G--~~~~~~~~~i~~~Gla~~vA~a~Sma~GeYv~e~ae~~~e~~ele~-------------~~~~~~g~~ 75 (169)
T TIGR00267 11 TLSALGVVGG--ASGSVDNYVIILAGLGGGVANGMSNAFGAFTAERAEEEREMRELEK-------------SMLMDEGKL 75 (169)
T ss_pred HHHHHHHHHH--hhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCCC
Q ss_pred cccccCcc
Q psy4795 272 ERDDIDDE 279 (285)
Q Consensus 272 ~~~~~~~~ 279 (285)
+++.++++
T Consensus 76 ~~~~~~~~ 83 (169)
T TIGR00267 76 DDTIIYKQ 83 (169)
T ss_pred chhhHHHH
No 495
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=20.46 E-value=28 Score=32.56 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=0.0
Q ss_pred HHHHHHHhcCccCCcccccccC
Q psy4795 256 AAAEAKAAQVVEETDDERDDID 277 (285)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~ 277 (285)
++|+++++.++||+++++|||+
T Consensus 297 ~~~~~~~~~~~~~~e~~~~d~~ 318 (323)
T PTZ00240 297 APAAASAAAKEEEEESDEDDFG 318 (323)
T ss_pred cccccccccccCCccCcccccC
No 496
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=20.41 E-value=3e+02 Score=24.13 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795 155 FTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVE 233 (285)
Q Consensus 155 ~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e 233 (285)
++-.+++|.-||+.. ..+++........ ...--+.-+..-++.+++.+.+.++..+.+ -|
T Consensus 2 ~lr~~V~G~~DGlvt--~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYls~kse-----------------~d 62 (225)
T cd02434 2 YLKSIVFGGLDGIVT--IFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAE-----------------RD 62 (225)
T ss_pred cHHHHhhcchhhhHH--HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------------HH
Q ss_pred HHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccc
Q psy4795 234 VRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDER 273 (285)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (285)
...+.++|++++.+++|..+.-+..+--+++.-.+++-++
T Consensus 63 ~~~~e~~re~~~i~~~pe~E~~el~~iy~~kG~~~~~a~~ 102 (225)
T cd02434 63 FLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSEEVADQ 102 (225)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHH
No 497
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=20.28 E-value=82 Score=30.98 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHhHHhhhhhcCChHHHHHHHHHHHH-------hcCccCCcccccccCcc
Q psy4795 237 MMKARRQKRLAEDPKAAAIAAAEAKA-------AQVVEETDDERDDIDDE 279 (285)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 279 (285)
+.++..++...+|+.++..++|-+.+ ++|++|+.|.+.+.||+
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (545)
T TIGR00811 492 RELREMINNAISDEEKTTFEAALAIEVKALDKLNAEEEEEATNKKEGKDT 541 (545)
T ss_pred hhHHHHHhcccchhhhhHHHHHHHHHHHHHHHhChHhhhccccccccchh
No 498
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.21 E-value=1.8e+02 Score=29.01 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccccccCccccc
Q psy4795 207 THLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEIIV 282 (285)
Q Consensus 207 ~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
+.+.......+.++..+...++-.+..+..|.-.|+.+..++. .+++++|+....++++|.++|
T Consensus 359 gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~hiiI 422 (558)
T PRK10669 359 NLLPQAGQNLVLAGAILSIMLNPVLFTLLERYLAKTETLEEQT------------LEEAIEEEKQIPVDICNHALL 422 (558)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhccccc------------cccccccccccccccCCCEEE
No 499
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=20.17 E-value=42 Score=31.26 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHhHHhhhhhcCChHHHHHHHHHHHHhcCccCCcccccccCcc
Q psy4795 233 EVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279 (285)
Q Consensus 233 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
|-+.+-++.|+++.++..|.+..+++|+.++++.+++-++++++-++
T Consensus 255 e~~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~ 301 (321)
T PF07946_consen 255 EAKKKAKKNREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSK 301 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 500
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=20.08 E-value=3.4e+02 Score=23.42 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795 193 LWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 193 l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~ 245 (285)
.+..+|...|................+.+.++..+.-...-+..+||+||.++
T Consensus 156 ~~~~lGy~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (208)
T COG0586 156 VLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWLRRRKKKKAR 208 (208)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Done!