Query psy4795
Match_columns 285
No_of_seqs 303 out of 1280
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:51:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.6 3.3E-13 1.1E-17 125.9 23.2 151 82-233 274-434 (451)
2 3o7q_A L-fucose-proton symport 99.5 3.5E-13 1.2E-17 125.4 12.4 123 87-210 52-177 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.4 1.4E-12 4.7E-17 123.7 14.9 150 79-232 32-196 (491)
4 4aps_A DI-OR tripeptide H+ sym 99.4 1.8E-12 6.3E-17 122.8 13.4 128 84-211 307-447 (491)
5 1pw4_A Glycerol-3-phosphate tr 99.3 2E-12 6.9E-17 120.5 9.0 129 83-211 51-180 (451)
6 3o7q_A L-fucose-proton symport 99.3 9.3E-11 3.2E-15 108.9 17.4 127 82-214 280-409 (438)
7 2xut_A Proton/peptide symporte 99.3 1.4E-11 4.9E-16 117.8 11.8 129 80-211 32-173 (524)
8 4gc0_A D-xylose-proton symport 99.3 5.4E-12 1.8E-16 119.4 8.3 116 94-209 55-185 (491)
9 2gfp_A EMRD, multidrug resista 99.2 6.7E-12 2.3E-16 114.8 5.6 119 88-210 27-148 (375)
10 4gc0_A D-xylose-proton symport 99.1 6.1E-09 2.1E-13 98.3 19.5 116 95-210 313-430 (491)
11 2cfq_A Lactose permease; trans 99.0 2.4E-10 8.2E-15 107.0 7.4 124 84-211 244-374 (417)
12 2gfp_A EMRD, multidrug resista 99.0 1.8E-10 6.2E-15 105.2 6.1 192 18-212 126-352 (375)
13 2xut_A Proton/peptide symporte 99.0 3E-09 1E-13 101.5 12.3 116 96-211 337-466 (524)
14 2cfq_A Lactose permease; trans 98.4 1E-08 3.5E-13 95.9 -3.6 127 80-210 27-162 (417)
15 4djk_A Probable glutamate/gamm 71.5 23 0.00078 32.9 10.1 17 215-231 447-463 (511)
16 2rdd_B UPF0092 membrane protei 64.0 11 0.00038 22.5 4.1 20 226-245 14-33 (37)
17 2i68_A Protein EMRE; transmemb 59.9 38 0.0013 26.3 7.7 38 190-227 59-99 (137)
18 2g9p_A Antimicrobial peptide l 53.7 3.9 0.00013 21.9 0.6 15 113-127 2-16 (26)
19 2oar_A Large-conductance mecha 50.3 26 0.00089 28.6 5.3 20 218-237 99-118 (174)
20 3vou_A ION transport 2 domain 49.6 32 0.0011 26.7 5.8 16 176-191 69-85 (148)
21 3iz5_t 60S acidic ribosomal pr 42.9 5.1 0.00018 30.3 0.0 9 269-277 97-105 (110)
22 2knc_A Integrin alpha-IIB; tra 42.5 13 0.00044 24.4 1.9 24 218-241 20-43 (54)
23 2knc_B Integrin beta-3; transm 41.7 39 0.0013 23.8 4.5 9 222-230 22-30 (79)
24 2jln_A MHP1; hydantoin, transp 38.6 7.3 0.00025 37.0 0.4 19 220-238 432-450 (501)
25 4h33_A LMO2059 protein; bilaye 35.7 63 0.0021 24.8 5.4 16 176-191 60-76 (137)
26 3l1l_A Arginine/agmatine antip 35.2 78 0.0027 28.5 6.8 15 217-231 412-426 (445)
27 3izc_t 60S acidic ribosomal pr 34.9 8.1 0.00028 29.0 0.0 8 270-277 94-101 (106)
28 1ldf_A Glycerol uptake facilit 34.4 63 0.0022 28.1 5.8 22 214-235 232-253 (281)
29 3gia_A Uncharacterized protein 32.2 1.7E+02 0.0059 26.1 8.7 12 215-226 402-413 (444)
30 3rvy_A ION transport protein; 30.0 30 0.001 29.8 2.9 18 218-235 222-239 (285)
31 3eff_K Voltage-gated potassium 23.0 25 0.00086 27.0 0.9 15 176-190 57-72 (139)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.58 E-value=3.3e-13 Score=125.87 Aligned_cols=151 Identities=14% Similarity=0.030 Sum_probs=116.2
Q ss_pred hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795 82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI 157 (285)
Q Consensus 82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~ 157 (285)
+.|.|+++.+|. .+.|+.....+++.++++++.|+++||+ |||+.+..+..+.......++...+ +.+.+...+.
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 352 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-AGNPTVDMIC 352 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-TTCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHH
Confidence 347788887777 5688999999999999999999999999 9999988877665522223333333 3466777777
Q ss_pred HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHH
Q psy4795 158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA----RMKLYVMGVVLVTGFCGYVI 231 (285)
Q Consensus 158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~----~~~l~il~~~lv~~~v~~~~ 231 (285)
.++.|++.+..++..++++.+.+|++. +.+.++++..+++ |..++..+.+.+.. +.-.++..++.+++.+.+.+
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888999999999875 9999999999999 99999998887644 23345555555666655555
Q ss_pred HH
Q psy4795 232 VE 233 (285)
Q Consensus 232 ~e 233 (285)
..
T Consensus 433 ~~ 434 (451)
T 1pw4_A 433 VM 434 (451)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.46 E-value=3.5e-13 Score=125.37 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=107.0
Q ss_pred hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795 87 ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG 164 (285)
Q Consensus 87 ~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig 164 (285)
+++.+|. .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...... ..++++.+++..++.|++
T Consensus 52 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHhh
Confidence 4455676 6899999999999999999999999999999999999998888776652211 145688889999999999
Q ss_pred hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.+...+..++++.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998766 88999999999999999999988876
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.43 E-value=1.4e-12 Score=123.69 Aligned_cols=150 Identities=18% Similarity=0.240 Sum_probs=118.7
Q ss_pred Hhhhhhhhhhhc-----cch--hHHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795 79 ISGLWGAYISCA-----LGV--SSVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNN 150 (285)
Q Consensus 79 ~~~ft~~Y~~~~-----lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~ 150 (285)
...+.+.|+++. +|. .++|++...+.++..++++++|+++|| +|||+++..+.++..++.+.+.. .++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----~~~ 107 (491)
T 4aps_A 32 MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----PFG 107 (491)
T ss_dssp HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----CCS
T ss_pred HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----hhh
Confidence 345567777776 787 579999999999999999999999999 89999999999988887766544 345
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccceeeecccc---chhHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHH
Q psy4795 151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN---KEAAFSNFRLWESVGFVIAYAYSTHLCA----RMKLYVMGVVLV 223 (285)
Q Consensus 151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~---~~~afs~~~l~~~lG~~ig~~~s~~l~~----~~~l~il~~~lv 223 (285)
.+.+++..++.|++.+...+..++++.+.+|++ ++.+++.++...++|..+|..+++.+.. ++-.++..+..+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 677888899999999999999999999999754 3568888999999999999999888654 333444444444
Q ss_pred HHHHHHHHH
Q psy4795 224 TGFCGYVIV 232 (285)
Q Consensus 224 ~~~v~~~~~ 232 (285)
++.+.+...
T Consensus 188 ~~~~~~~~~ 196 (491)
T 4aps_A 188 IGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 454444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.40 E-value=1.8e-12 Score=122.79 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=98.2
Q ss_pred hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-----HHHHHHHHHHHHHHHhC-----CCCCCh
Q psy4795 84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-----LGFIVHCCLIWILVVWR-----PHPNNP 151 (285)
Q Consensus 84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-----~g~~l~~i~~~~l~~~~-----p~~~~~ 151 (285)
+.|.++..+.+ ..++.....+++..+++++.|+++||+|||+... .+.++..+++..+.... +.+.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4aps_A 307 ATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSP 386 (491)
T ss_dssp HHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCT
T ss_pred HHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccH
Confidence 55666655553 5777888899999999999999999999986654 66666665554332211 223355
Q ss_pred HHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
+...+..++.|++.+..++..+++..+.+|++. +.+.++++..+++|..++..+.+.+..
T Consensus 387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777889999999999999999999999875 999999999999999999999887643
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.34 E-value=2e-12 Score=120.52 Aligned_cols=129 Identities=9% Similarity=0.087 Sum_probs=105.5
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795 83 WGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG 162 (285)
Q Consensus 83 t~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G 162 (285)
.|.+.++.....+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+.....++++.+++..++.|
T Consensus 51 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 130 (451)
T 1pw4_A 51 MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 130 (451)
T ss_dssp HHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 34444443233579999999999999999999999999999999999999888877665441000134577788899999
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++.+...+..++++.+.+|+++ +.+++..+...++|..+|..+++.+..
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998655 999999999999999999999877543
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=9.3e-11 Score=108.92 Aligned_cols=127 Identities=10% Similarity=-0.064 Sum_probs=100.3
Q ss_pred hhhhh-hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 82 LWGAY-ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 82 ft~~Y-~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
+.|.| +++.+|. .+.|+......++..++.++.|+++||+|||+++..+.++..++.+.+.. . ++.+. ....
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~ 354 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-A---GGHVG-LIAL 354 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-C---CHHHH-HHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-c---CCcHH-HHHH
Confidence 45788 8887777 57889999999999999999999999999999999988877776655444 2 23333 3445
Q ss_pred HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMK 214 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~ 214 (285)
.+.|++.+...+..+++..+.+|++++.+.+... ...+|..++..+.+.+.....
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999989999987766666655 667999999988888766543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=1.4e-11 Score=117.77 Aligned_cols=129 Identities=18% Similarity=0.182 Sum_probs=107.5
Q ss_pred hhhhhhhhhhccc------h--hHHHHHHHHHHHHHHHHHhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795 80 SGLWGAYISCALG------V--SSVGYVMICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVWRPHPNN 150 (285)
Q Consensus 80 ~~ft~~Y~~~~lg------~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-Grk~~i~~g~~l~~i~~~~l~~~~p~~~~ 150 (285)
..+.+.|+++.+| . .+.|++...+.++..++++++|+++||+ |||+++..+.++..++.+...+. +.+
T Consensus 32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~~~ 108 (524)
T 2xut_A 32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---EHS 108 (524)
T ss_dssp HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---SSC
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---ccc
Confidence 4456777777777 6 5799999999999999999999999999 99999999988888777665542 126
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhH---hHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAA---FSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~a---fs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.+.+++..++.|++.+...+..++++.+.+|+++ +.+ ++.++...++|..+|..+++.+..
T Consensus 109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788888999999999999999999999998765 544 445999999999999998877653
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.28 E-value=5.4e-12 Score=119.42 Aligned_cols=116 Identities=12% Similarity=-0.005 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCC--------------CCCChHHHHHHHH
Q psy4795 94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP--------------HPNNPKIFFTISG 159 (285)
Q Consensus 94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p--------------~~~~~~~~~~~~~ 159 (285)
.+.|++...+.++.++|++++|+++||+|||+++.++.++..++.+...+... -.++++.+++..+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 35778888999999999999999999999999999999988887766543110 1356788899999
Q ss_pred HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795 160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL 209 (285)
Q Consensus 160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l 209 (285)
+.|++.|...+..+.+++|..|+++ +...+.++....+|..++...+..+
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 9999999999999999999998876 8899999999999999888877554
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.22 E-value=6.7e-12 Score=114.81 Aligned_cols=119 Identities=20% Similarity=0.275 Sum_probs=104.3
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795 88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD 165 (285)
Q Consensus 88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~ 165 (285)
.+.+|. .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+..... ++.+.+++..++.|++.
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----SSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHH
Confidence 345666 578999999999999999999999999999999999998888877665542 46778888899999999
Q ss_pred hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
+..++..++++.|.+|+++ +.+++.++...++|..++..+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999998654 99999999999999999999988864
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.09 E-value=6.1e-09 Score=98.33 Aligned_cols=116 Identities=13% Similarity=0.026 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh-hhhhhcccc
Q psy4795 95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG-DAVWQTQVN 173 (285)
Q Consensus 95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig-~g~~~~~~~ 173 (285)
.........++...+++++++++.||+|||+.++.+.....++.+.+........+.+...+...+...+ ...+.+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445667788899999999999999999999999888877766554322211122223333323332222 223445567
Q ss_pred cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.+.+|+||++. +.+.++.+..+++|..++....+.+.
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~ 430 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD 430 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999876 89999999999999888876665543
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.04 E-value=2.4e-10 Score=107.00 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=94.6
Q ss_pred hhhhhhccc-----hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795 84 GAYISCALG-----VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS 158 (285)
Q Consensus 84 ~~Y~~~~lg-----~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~ 158 (285)
|.|+++.++ ....|+......++++++.++.|+++||+|||+++..+..+..+..+.+.. .++.+.+.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 319 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF----ATSALEVVILK 319 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT----CCSHHHHHHHT
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHH
Confidence 456655444 234677788888899999999999999999999998887776665433322 23455666666
Q ss_pred HHHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhH
Q psy4795 159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~ 211 (285)
.+.+++.+.+++...++..+.+|++. +++.+. ++..+++|..++..+++.+..
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 67788877788778889999998876 888887 689999999999999887654
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.03 E-value=1.8e-10 Score=105.23 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHH-HHHh-cccCCCC--------cchH------H---H
Q psy4795 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW-ILVV-WRPHPNN--------PKIF------F---T 78 (285)
Q Consensus 18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~-~fl~-~e~~~~~--------p~l~------~---~ 78 (285)
.|......+++..+..++.|.+.++.|++..++...+..++..+ .... .|+++++ .... + .
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (375)
T 2gfp_A 126 NSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYL 205 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHH
Confidence 45566677778888888888888888887555544444433322 2222 2221111 0000 0 0
Q ss_pred H------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHH-HHHHHHH-HH
Q psy4795 79 I------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV-HCCLIWI-LV 142 (285)
Q Consensus 79 ~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l-~~i~~~~-l~ 142 (285)
. ..+.|.|+++.+|. .+.|+.....+++..+++++.|+++||+||+ ...+... ...+... ..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~ 283 (375)
T 2gfp_A 206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP 283 (375)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 0 11336777777777 4688999999999999999999999999873 2333322 2222211 11
Q ss_pred HhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795 143 VWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR 212 (285)
Q Consensus 143 ~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~ 212 (285)
...+ +++.+..++...+.|++.+..++..+++..+.+|++++++.++++..+++|..++..+.+.+...
T Consensus 284 ~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 284 DWFG-VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred hhhc-cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1111 12456666778889999999999999999999996669999999999999999998888776543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.98 E-value=3e-09 Score=101.52 Aligned_cols=116 Identities=8% Similarity=-0.041 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh----cccCC----hhHHHHHHHHHHHHHHHHHHhC-----CCCCChHHHHHHHHHHH
Q psy4795 96 VGYVMICFGVVNAICSLLFGTLM----KFIGR----SPLMALGFIVHCCLIWILVVWR-----PHPNNPKIFFTISGLWG 162 (285)
Q Consensus 96 ~G~v~~~~gv~~~i~s~l~G~Ls----DriGr----k~~i~~g~~l~~i~~~~l~~~~-----p~~~~~~~~~~~~~l~G 162 (285)
.+.+....+++..+++++.|++. ||.|+ ++.+..+.++..++.+.+.... +...+.+...+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 55666666677778888888875 55443 2456666666666554433221 01235566677788999
Q ss_pred Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795 163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA 211 (285)
Q Consensus 163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~ 211 (285)
++.+..++..+++..+.+|++. +.+.++++..+++|..+|..+.+.+..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999765 999999999999999999998877643
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.40 E-value=1e-08 Score=95.86 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=82.2
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--hCC--CCCChHH
Q psy4795 80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--WRP--HPNNPKI 153 (285)
Q Consensus 80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~~p--~~~~~~~ 153 (285)
..|.|.|+++.+|. .++|+++..+.++..++++++|+++||+|||+++.++..+..+....... ..+ ..+.
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 103 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI--- 103 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC---
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35678888887777 57999999999999999999999999999999999887765432111110 000 0011
Q ss_pred HHHHHHHHHHhhhhhhcccccceeeecc---ccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795 154 FFTISGLWGVGDAVWQTQVNGLYGTLFR---RNKEAAFSNFRLWESVGFVIAYAYSTHLC 210 (285)
Q Consensus 154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp---~~~~~afs~~~l~~~lG~~ig~~~s~~l~ 210 (285)
.....+.|++.+...+...+...+..+ ++++.+++..+.+.++|.+++..+++.+.
T Consensus 104 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 162 (417)
T 2cfq_A 104 -LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162 (417)
T ss_dssp -CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222233333333333333333333 23366777888888999999998887764
No 15
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=71.47 E-value=23 Score=32.87 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4795 215 LYVMGVVLVTGFCGYVI 231 (285)
Q Consensus 215 l~il~~~lv~~~v~~~~ 231 (285)
..+..++.+++.+.|..
T Consensus 447 ~~~~~~~~~~~~i~~~~ 463 (511)
T 4djk_A 447 ELLVVSFLVVLALPFIL 463 (511)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 16
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=63.97 E-value=11 Score=22.49 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhHHhhhh
Q psy4795 226 FCGYVIVEVRHMMKARRQKR 245 (285)
Q Consensus 226 ~v~~~~~e~~~~~~~~~~~~ 245 (285)
.+.|+.+-+-.+||+|++++
T Consensus 14 ~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 14 LIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp HHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 44555555444444444433
No 17
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=59.86 E-value=38 Score=26.33 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHH
Q psy4795 190 NFRLWESVGFVIAYAYSTHLC---ARMKLYVMGVVLVTGFC 227 (285)
Q Consensus 190 ~~~l~~~lG~~ig~~~s~~l~---~~~~l~il~~~lv~~~v 227 (285)
.|-+|.++|.+....++-.+. ....-++-+.+.+.+.+
T Consensus 59 ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ 99 (137)
T 2i68_A 59 AYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVL 99 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 555667788777777775542 22333444444444444
No 18
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.74 E-value=3.9 Score=21.92 Aligned_cols=15 Identities=47% Similarity=0.848 Sum_probs=12.4
Q ss_pred hhhhhhcccCChhHH
Q psy4795 113 LFGTLMKFIGRSPLM 127 (285)
Q Consensus 113 l~G~LsDriGrk~~i 127 (285)
++|+|.+++|||.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 478999999999753
No 19
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=50.26 E-value=26 Score=28.59 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVEVRHM 237 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~ 237 (285)
.+-+++++++.|+++.+-..
T Consensus 99 vInFlIIA~vIYFliVk~iN 118 (174)
T 2oar_A 99 AINFFLIAFAVYFLVVLPYN 118 (174)
T ss_dssp HHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566777777666554333
No 20
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=49.62 E-value=32 Score=26.70 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=9.4
Q ss_pred eeeeccccc-hhHhHHH
Q psy4795 176 YGTLFRRNK-EAAFSNF 191 (285)
Q Consensus 176 i~~~fp~~~-~~afs~~ 191 (285)
++|..|... +..++..
T Consensus 69 yGd~~p~t~~~r~~~~~ 85 (148)
T 3vou_A 69 DGNFSPQTDFGKVFTIL 85 (148)
T ss_dssp CSSCCCCSHHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHH
Confidence 457778665 5555443
No 21
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=42.85 E-value=5.1 Score=30.35 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=0.0
Q ss_pred CcccccccC
Q psy4795 269 TDDERDDID 277 (285)
Q Consensus 269 ~~~~~~~~~ 277 (285)
++|+.|||.
T Consensus 97 ~EEsddDmG 105 (110)
T 3iz5_t 97 KEESDDDMG 105 (110)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 333444443
No 22
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.48 E-value=13 Score=24.40 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy4795 218 MGVVLVTGFCGYVIVEVRHMMKAR 241 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~~~~~~~ 241 (285)
+.++++++.+.|.....-+-|++|
T Consensus 20 l~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 20 LGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHcCcccCCC
Confidence 444556666666655555555444
No 23
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.74 E-value=39 Score=23.77 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy4795 222 LVTGFCGYV 230 (285)
Q Consensus 222 lv~~~v~~~ 230 (285)
++++++...
T Consensus 22 lliGlllll 30 (79)
T 2knc_B 22 LLIGLAALL 30 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 24
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=38.57 E-value=7.3 Score=37.00 Aligned_cols=19 Identities=5% Similarity=-0.178 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4795 220 VVLVTGFCGYVIVEVRHMM 238 (285)
Q Consensus 220 ~~lv~~~v~~~~~e~~~~~ 238 (285)
.-++++.+.|..+.++.++
T Consensus 432 ~g~~va~v~Y~~l~~~~~~ 450 (501)
T 2jln_A 432 TGLIAALLLHIPAMRWVAK 450 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 3446677788877766544
No 25
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=35.67 E-value=63 Score=24.76 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=10.3
Q ss_pred eeeeccccc-hhHhHHH
Q psy4795 176 YGTLFRRNK-EAAFSNF 191 (285)
Q Consensus 176 i~~~fp~~~-~~afs~~ 191 (285)
++|..|... +..+++.
T Consensus 60 yGDi~P~t~~gr~~~~~ 76 (137)
T 4h33_A 60 YGDIVPVTPIGRILASI 76 (137)
T ss_dssp CSSSCCCSHHHHHHHHH
T ss_pred CCCCCCCCHhHHHHHHH
Confidence 567888765 6655543
No 26
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.23 E-value=78 Score=28.47 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy4795 217 VMGVVLVTGFCGYVI 231 (285)
Q Consensus 217 il~~~lv~~~v~~~~ 231 (285)
+.....+++.+.|.+
T Consensus 412 ~~~~~~~~g~~~y~~ 426 (445)
T 3l1l_A 412 WSFVTLMVITAMYAL 426 (445)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555554
No 27
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=34.86 E-value=8.1 Score=29.01 Aligned_cols=8 Identities=25% Similarity=0.721 Sum_probs=0.0
Q ss_pred cccccccC
Q psy4795 270 DDERDDID 277 (285)
Q Consensus 270 ~~~~~~~~ 277 (285)
+|+.|||.
T Consensus 94 EEsddDmG 101 (106)
T 3izc_t 94 EESDDDMG 101 (106)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33444443
No 28
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=34.43 E-value=63 Score=28.15 Aligned_cols=22 Identities=9% Similarity=-0.161 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4795 214 KLYVMGVVLVTGFCGYVIVEVR 235 (285)
Q Consensus 214 ~l~il~~~lv~~~v~~~~~e~~ 235 (285)
+.|+..+-.+++.+.=.++...
T Consensus 232 ~~WVy~vgPi~Ga~la~~~y~~ 253 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFAYRK 253 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhHHHHHHHHHHHHHHHH
Confidence 3566666666666655554433
No 29
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=32.16 E-value=1.7e+02 Score=26.11 Aligned_cols=12 Identities=8% Similarity=0.204 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy4795 215 LYVMGVVLVTGF 226 (285)
Q Consensus 215 l~il~~~lv~~~ 226 (285)
.++.....+...
T Consensus 402 ~~~~~~~~~~~~ 413 (444)
T 3gia_A 402 FYGIIATFIGVL 413 (444)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 30
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=29.99 E-value=30 Score=29.78 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4795 218 MGVVLVTGFCGYVIVEVR 235 (285)
Q Consensus 218 l~~~lv~~~v~~~~~e~~ 235 (285)
+.++.++++..=.+.+.-
T Consensus 222 i~~~~~lnl~~aii~~~f 239 (285)
T 3rvy_A 222 VVTFVMINLVVAICVDAM 239 (285)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555543
No 31
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=22.99 E-value=25 Score=26.97 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=9.1
Q ss_pred eeeeccccc-hhHhHH
Q psy4795 176 YGTLFRRNK-EAAFSN 190 (285)
Q Consensus 176 i~~~fp~~~-~~afs~ 190 (285)
++|..|... +..+++
T Consensus 57 yGd~~P~t~~~r~~~~ 72 (139)
T 3eff_K 57 YGDLYPVTLWGRLVAV 72 (139)
T ss_dssp CSSSCCCSSHHHHHHH
T ss_pred CCCCcCCCcCHHHHHH
Confidence 467778765 555443
Done!