RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4795
(285 letters)
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 45.0 bits (107), Expect = 2e-05
Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 24/233 (10%)
Query: 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF 77
+G FG+ + LL G L + +G L + I+ L+ L++ +
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL--GLLLALLLLFLLRLLLLLAL 182
Query: 78 TISGLWGAYISCA------------LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-S 124
L Y L + G ++ FG+ + +LL G L +GR
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242
Query: 125 PLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF-RRN 183
L+ +G ++ + +L + + L G G + L L
Sbjct: 243 LLLLIGLLLAALGLLLLALAPSLA----LLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 184 KEAAFSNFRLWESVGFVIAYAYS----THLCARMKLYVMGVVLVTGFCGYVIV 232
+ A F + S+G + + ++ + + +++
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351
Score = 38.4 bits (90), Expect = 0.003
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 14/145 (9%)
Query: 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPN 71
L + G ++ FG+ + +LL G L +GR L+ +G ++ + +L +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 72 NPKIFFTISGLWGAYISCALGV-----------SSVGYVMICFGVVNAICSLLFGTLMKF 120
+ G L + ++ G + A+ LL G L+
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327
Query: 121 IGRSPLMALGFIVHCCLIWILVVWR 145
G + + L+ L++
Sbjct: 328 GGYGGVFLILAA--LALLAALLLLL 350
Score = 30.7 bits (70), Expect = 0.80
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 13/147 (8%)
Query: 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN 72
L S G ++ F + A+ SLL G L GR ++ LG ++ L +L+ +
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL-FALGSLLLAFASSLWL 89
Query: 73 PKIFFTISGLWGAYISCALGV------------SSVGYVMICFGVVNAICSLLFGTLMKF 120
+ + GL G + A ++G FG+ + LL G L +
Sbjct: 90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149
Query: 121 IGRSPLMALGFIVHCCLIWILVVWRPH 147
+G L + I+ L +L+
Sbjct: 150 LGWRWLFLILAILGLLLALLLLFLLRL 176
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 39.6 bits (93), Expect = 0.001
Identities = 38/159 (23%), Positives = 55/159 (34%), Gaps = 27/159 (16%)
Query: 8 YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 67
I LG+S V I GVVN + + + L+ GR PL+ LG +L V
Sbjct: 278 TIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337
Query: 68 PHPNNPK------IFFTISGLWGAYISC-ALGVSSVGYV--------------MICFGVV 106
K I F + +I+ ALG V +V M
Sbjct: 338 LGVAKSKGAGIVAIVFIL-----LFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAA 392
Query: 107 NAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVW 144
N + + L G L I G +++IL V+
Sbjct: 393 NWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVF 431
Score = 33.0 bits (76), Expect = 0.14
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 86 YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 145
I LG+S V I GVVN + + + L+ GR PL+ LG +L V
Sbjct: 278 TIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337
Query: 146 PHPNNPK----------IFFTISGLWGVGDAVW 168
K + F G G W
Sbjct: 338 LGVAKSKGAGIVAIVFILLFIAFFALGWGPVPW 370
>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
Length = 445
Score = 36.6 bits (85), Expect = 0.013
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 17/62 (27%)
Query: 229 YVIVEVRHMMKARR-------------QKRLAEDPKA--AAIAAAEAKAAQVVEE--TDD 271
+V+ VR +M AR+ RLAE +A A+ A+A+AA+VVEE D
Sbjct: 21 FVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDA 80
Query: 272 ER 273
ER
Sbjct: 81 ER 82
>gnl|CDD|131353 TIGR02300, FYDLN_acid, TIGR02300 family protein. Members of this
family are bacterial proteins with a conserved motif
[KR]FYDLN, sometimes flanked by a pair of CXXC motifs,
followed by a long region of low complexity sequence in
which roughly half the residues are Asp and Glu,
including multiple runs of five or more acidic residues.
The function of members of this family is unknown.
Length = 129
Score = 34.2 bits (78), Expect = 0.021
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 222 LVTGFCGYVIVEVRHMMKARR----QKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDID 277
V+ + G +K+RR ++ A K EA +EE D+E D
Sbjct: 27 AVSPYTGEQ-FPPEEALKSRRVRADDEKEAVAVKEVDPEIDEAAELVSLEEADEEVDPGA 85
Query: 278 D 278
Sbjct: 86 P 86
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 35.3 bits (82), Expect = 0.025
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 233 EVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280
E+ ++ + ++R AE E + + + E + ER +E
Sbjct: 292 ELEQQIEEKEERRAAE-------REEELEEGERLREEEAERQARIEEE 332
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 34.9 bits (81), Expect = 0.043
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 237 MMKARRQKRLA-------------EDPK----AAAIAAAEAKAAQVVEETDDERDDIDD 278
++ AR ++ DPK AAAIA A+AK A + +++D
Sbjct: 519 VIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDP 577
Score = 31.5 bits (72), Expect = 0.50
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 247 AEDPKAAAIAAAEAKA 262
AEDPK AA+AAA A+A
Sbjct: 672 AEDPKKAAVAAAIARA 687
Score = 31.5 bits (72), Expect = 0.53
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 247 AEDPK----AAAIAAAEAKAAQVVEETDDERDDIDD 278
DP+ AAAIA A+A+ A + + + D
Sbjct: 640 PVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDP 675
Score = 29.9 bits (68), Expect = 1.7
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 233 EVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
E RH A + +D AAA+A +AK A + + D
Sbjct: 470 EARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDN 516
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 32.9 bits (75), Expect = 0.062
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 222 LVTGFCGYVIVEVRHM-MKARRQKRLAEDPKAAAIAAAEAKA-------------AQVVE 267
++ GY+++ + + A+ Q++ E +A A E KA E
Sbjct: 20 IIVIVGGYLLIRPYFIKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEE 79
Query: 268 ETDDERDDIDDE 279
+TDDE D+ D
Sbjct: 80 DTDDEEDEEDFA 91
>gnl|CDD|218670 pfam05639, Pup, Pup-like protein. This family consists of several
short bacterial proteins formely known as (DUF797). It
was recently shown that Mycobacterium tuberculosis
contains a small protein, Pup (Rv2111c), that is
covalently conjugated to the e-NH2 groups of lysines on
several target proteins (pupylation) such as the malonyl
CoA acyl carrier protein (FabD). Pupylation of FabD was
shown to result in its recruitment to the mycobacterial
proteasome and subsequent degradation analogous to
eukaryotic ubiquitin-conjugated proteins. Searches
recovered Pup orthologs in all major actinobacteria
lineages including the basal bifidobacteria and also
sporadically in certain other bacterial lineages. The
Pup proteins were all between 50-90 residues in length
and a multiple alignment shows that they all contain a
conserved motif with a G [EQ] signature at the
C-terminus. Thus, all of them are suitable for
conjugation via the terminal glutamate or the deamidated
glutamine (as shown in the case of the Mycobacterium
Pup). The conserved globular core of Pup is predicted to
form a bihelical unit with the extreme C-terminal 6-7
residues forming a tail in the extended conformation.
Thus, Pup is structurally unrelated to the ubiquitin
fold and has convergently evolved the function of
protein modifier.
Length = 66
Score = 30.8 bits (70), Expect = 0.12
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 241 RRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDD 278
RR++ + E +A A A + E+ DD D+IDD
Sbjct: 12 RREEEVEETAEATADGAERREKL--TEDVDDLLDEIDD 47
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 30.7 bits (70), Expect = 0.13
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 238 MKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDER 273
+ AR Q L + A AA EA+A
Sbjct: 22 LSAREQLSLFLEELEADAAALEAEAEAAAAPEQPAA 57
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 32.3 bits (74), Expect = 0.13
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 233 EVRHMMKARRQKR--LAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280
+ + ++K R++ R L D K E + +V E DE + ID+ +
Sbjct: 79 DFKKLLKWRKKVRKLLGLDKKEKE----EEEEEEVEVEELDEEEQIDELL 124
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 31.1 bits (71), Expect = 0.16
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 226 FCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280
CG V + + A D + AA + + V DD+ DD DD++
Sbjct: 31 KCGEE-VPPE----VAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDL 80
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 32.1 bits (74), Expect = 0.20
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 16/64 (25%)
Query: 220 VVLVTGFC-GYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDD 278
+ LV GF GY + +K +AE A I++AE +A Q++EE E + +
Sbjct: 8 IALVVGFAIGYFV-----------RKSIAE----AKISSAEEEAKQIIEEAKKEAEALKK 52
Query: 279 EIIV 282
E ++
Sbjct: 53 EALL 56
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 32.7 bits (75), Expect = 0.27
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 233 EVRHMMKARRQKR--LAEDPKAAAIAAAEAKAAQVVE----------ETDDERDDIDDEI 280
E R + +R+++ L + A I A + E E +ERDD+ EI
Sbjct: 624 ERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 32.2 bits (74), Expect = 0.27
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF 155
+++ G I +L+ L+K G+ L +G ++ +L +
Sbjct: 274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVA 333
Query: 156 TISGLWGVG 164
I G G
Sbjct: 334 LIIAGVGTG 342
Score = 31.8 bits (73), Expect = 0.38
Identities = 13/74 (17%), Positives = 26/74 (35%)
Query: 18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF 77
+++ G I +L+ L+K G+ L +G ++ +L +
Sbjct: 274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVA 333
Query: 78 TISGLWGAYISCAL 91
I G I+ L
Sbjct: 334 LIIAGVGTGIANPL 347
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.7 bits (72), Expect = 0.27
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 239 KARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDE 272
R + +AE A A A A +AA EE +E
Sbjct: 140 NEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEE 173
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 32.3 bits (73), Expect = 0.29
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 233 EVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDD 275
EV KA+ + + A KA A A A+ KA+Q ++ DE
Sbjct: 194 EVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAK 236
Score = 31.5 bits (71), Expect = 0.49
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 248 EDPKAAAIAAAEAKAA 263
ED KA AIAAA+AKAA
Sbjct: 233 EDAKAKAIAAAKAKAA 248
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 31.8 bits (73), Expect = 0.39
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 76 FFTISGLWGAYISCALGVSS-VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVH 134
+GL Y + LG + +++ + + + L+ L K G+ LG ++
Sbjct: 238 MAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLA 297
Query: 135 CCLIWILVVWRPHPNNPKIFFTISGLWGVG 164
+ +L P + +F + L G+G
Sbjct: 298 AIGLVLLFFLP--PGSLWLFLVLVVLAGIG 325
Score = 29.9 bits (68), Expect = 1.7
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 16 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKI 75
+++ + + + L+ L K G+ LG ++ + +L P + +
Sbjct: 257 GLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLP--PGSLWL 314
Query: 76 FFTISGLWGA 85
F + L G
Sbjct: 315 FLVLVVLAGI 324
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 31.1 bits (71), Expect = 0.42
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 230 VIVEVRHMMKAR-RQKRLAEDPKAAAI-AAAEAKAAQVVEETDDERDDIDDEI 280
V+ ++R +AR + R D +A I A AEA A +++E D + + EI
Sbjct: 6 VVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILE---DREAEAEREI 55
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 30.4 bits (69), Expect = 0.47
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 221 VLVTGFC-GYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEA----------------KAA 263
+L+ FC YV + ++ R QK++A+ +A A EA +A
Sbjct: 6 ILLVWFCMKYVWPPLAKAIETR-QKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQ 64
Query: 264 QVVEETDDERDDIDDEII 281
+++E + +I +E
Sbjct: 65 EIIENANKRGSEILEEAK 82
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 31.7 bits (72), Expect = 0.47
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 239 KARRQKRLAEDPKAAAIAAAEAKAAQ 264
+A +++ AE+ A A AAA+AKA
Sbjct: 126 QAALKQKQAEEAAAKAAAAAKAKAEA 151
Score = 30.5 bits (69), Expect = 0.84
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 239 KARRQKRLAEDPKAAAIAAAEAKAAQVVEETDD 271
KA + + A + AAA AA +A AA+ E DD
Sbjct: 229 KAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDD 261
Score = 29.8 bits (67), Expect = 1.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 242 RQKRLAEDPKAAAIAAAEAKAA 263
++K AE AAA AAAEAKAA
Sbjct: 216 KKKAAAEAKAAAAKAAAEAKAA 237
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 31.1 bits (71), Expect = 0.49
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 240 ARRQKRLAEDPKAAAIAAA----EAKAAQVVEETDDERDDIDD 278
A + K +P AAA AAA A AA ++E ++ D
Sbjct: 262 AEKIKEALANPSAAAAAAAAAAAAAAAAAAAPAEEEEEEEDDM 304
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 29.9 bits (68), Expect = 0.53
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 247 AEDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
A AAA AAA A + EE ++E + +E
Sbjct: 63 AAAAAAAAAAAAAAAEEKKEEEEEEEEKEESEE 95
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 30.3 bits (69), Expect = 0.57
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 239 KARRQKRLAEDPKA---AAIAAAEAKAAQVVEETDDERDDIDDEIIV 282
+A R K A+ A + A +A++++E+ E + I +EI
Sbjct: 48 EAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKA 94
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional.
Length = 218
Score = 30.9 bits (70), Expect = 0.61
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 247 AEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280
A A AA EA AQ V E D D ++ EI
Sbjct: 21 ATSADRAEAAAEEAALAQGVPEDDPFGDAVEGEI 54
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 29.6 bits (67), Expect = 0.65
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 250 PKAAAIAAAEAKAAQVVEETDDERDDIDDEII 281
P AAA AAA A A EE +E ++ D+ +
Sbjct: 67 PAAAAAAAAAAAAEAKKEEKKEEEEEESDDDM 98
>gnl|CDD|153397 cd08028, LARP_3, La RNA-binding domain of La-related protein 3.
This domain is found at the N-terminus of the La
autoantigen and similar proteins, and co-occurs with an
RNA-recognition motif (RRM). Together these domains
function to bind primary transcripts of RNA polymerase
III at their 3' terminus and protect them from
exonucleolytic degradation. Binding is specific for the
3'-terminal UUU-OH motif. The La autoantigen is also
called Lupus La protein, LARP3, or Sjoegren syndrome
type B antigen (SS-B).
Length = 82
Score = 28.8 bits (65), Expect = 0.69
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 228 GYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDI 276
G+V +EV M+K R K L+ DP+ IA A K+ + E +++ I
Sbjct: 36 GWVPMEV--MLKFNRLKSLSSDPE--VIAKALKKSKSGLIEVSEDKTKI 80
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 29.5 bits (67), Expect = 0.77
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 245 RLAEDPKAAA-------IAAAEAKAAQVVEETDDERDDIDDEI 280
AE+ KA A I AEAKA ++V + ++E + E
Sbjct: 74 ETAEEVKANAQKEAELIIKEAEAKAERIVNDANEEAKKLATEY 116
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 30.6 bits (69), Expect = 0.87
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 239 KARRQ--KRLAEDPKAAAIAAAEAKAAQ 264
KA+ + K AE KA A A A AKA
Sbjct: 188 KAKAEEAKAKAEAAKAKAAAEAAAKAEA 215
Score = 30.6 bits (69), Expect = 0.88
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 240 ARRQKRLAEDPKAAAIAAAEAKAAQVVEE 268
RQK L + A A +AA+ EE
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEE 116
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 28.9 bits (65), Expect = 1.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 250 PKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
P AAA AAA A AA EE ++E ++ ++E
Sbjct: 61 PVAAAAAAAAAAAAAEEEEEEEEEEEEEEE 90
Score = 28.9 bits (65), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 250 PKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
AAA AAA A+ + EE ++E ++ +E
Sbjct: 65 AAAAAAAAAAAEEEEEEEEEEEEEEEESEE 94
Score = 28.1 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 252 AAAIAAAEAKAAQVVEETDDERDDIDDE 279
AAA AAA A AA+ EE ++E ++ ++E
Sbjct: 64 AAAAAAAAAAAAEEEEEEEEEEEEEEEE 91
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 28.9 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 247 AEDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
A A A AAAEA A+ E+ ++ ++ DD+
Sbjct: 70 AAAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 252 AAAIAAAEAKAAQVVEETDDERDDID 277
AAA AAA A + EE ++E +D D
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEEEDDD 82
Score = 28.0 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 250 PKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280
AAA AAA A AA+ ++ ++E ++ DD++
Sbjct: 53 AAAAAAAAAAAAAAEEEKKEEEEEEEEDDDM 83
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 29.5 bits (67), Expect = 1.4
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 243 QKRLAE------DPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
+ RL++ DP AAA AA A ++E D E DD DDE
Sbjct: 19 EGRLSDLISGFIDPNAAAAAATAAAIESELDEEDLEDDDDDDE 61
Score = 28.3 bits (64), Expect = 3.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 247 AEDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
A AAAI + + ++ DDE +D DDE
Sbjct: 36 AAAATAAAIESELDEEDLEDDDDDDEDEDEDDE 68
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 28.7 bits (65), Expect = 1.4
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 246 LAED-PKA-----AAIAAAEAKAAQVVEETDDERDDIDDE 279
AE+ P A AAIAA EA+ A E+ DD+ D+ D+E
Sbjct: 38 TAEELPAAIARLEAAIAAEEARRAPPAEDEDDDEDEEDEE 77
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 28.4 bits (64), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 252 AAAIAAAEAKAAQVVEETDDERDD 275
AAA AAA AK + EE+++E DD
Sbjct: 78 AAAAAAAAAKKEEKKEESEEESDD 101
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 29.7 bits (67), Expect = 1.6
Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN 72
+ + +G ++ F + A+ L G L GR ++ +G ++ + +L+
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW-- 86
Query: 73 PKIFFTISGLWGAYISCALGVSS---------------VGYVMICFGVVNAICSLLFGTL 117
+ + L G ++ +G + FG+ A+ LL G L
Sbjct: 87 --LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLL 144
Query: 118 MKFIG-RSPLMALGFI-VHCCLIWILVVWRPHPNNPKI 153
G R+ + L + + ++ L++ RP P + +
Sbjct: 145 ASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRP 182
>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional.
Length = 270
Score = 29.8 bits (67), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 235 RHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
RH + R +R E +A A A A A AA E D+
Sbjct: 158 RHDARQARLRREREAAEARAAARAAASAAAAAAEASAAAAPAADD 202
>gnl|CDD|165706 PLN00138, PLN00138, large subunit ribosomal protein LP2;
Provisional.
Length = 113
Score = 28.5 bits (63), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 252 AAAIAAAEAKAAQVVEETDDERDDI 276
AA AAEAK + VEE ++ DD+
Sbjct: 83 GAAAPAAEAKKEEKVEEKEESDDDM 107
>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional.
Length = 323
Score = 29.5 bits (66), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 247 AEDPKAAAIAAAEAKAAQVVEETDDERDD 275
+ +AAA A A A AA EE + + DD
Sbjct: 288 SAAAEAAAAAPAAASAAAKEEEEESDEDD 316
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 28.5 bits (64), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 47 PLMALGFIVHCCLIWILVVW 66
LM F+V LI IL W
Sbjct: 8 YLMLATFVVFLLLIVILNSW 27
Score = 28.5 bits (64), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 125 PLMALGFIVHCCLIWILVVW 144
LM F+V LI IL W
Sbjct: 8 YLMLATFVVFLLLIVILNSW 27
>gnl|CDD|177311 PHA01547, PHA01547, putative internal virion protein A.
Length = 206
Score = 29.2 bits (65), Expect = 2.0
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 234 VRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEI 280
+ + +A+R LA AA AAA K A V D DID E+
Sbjct: 65 AKSLQEAKRMAMLAGGSAAAQAAAAGVKGASV----DAVALDIDREV 107
>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.
Length = 156
Score = 28.6 bits (65), Expect = 2.2
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 215 LYVMGV-VLVTGFCG-YVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQ 264
+ + +++ F +V + ++ R QK++A+ AA A E + AQ
Sbjct: 8 IGQLIAFLILVWFIMKFVWPPIMKALEER-QKKIADGLAAAERAKKELELAQ 58
>gnl|CDD|182422 PRK10381, PRK10381, LPS O-antigen length regulator; Provisional.
Length = 377
Score = 29.3 bits (66), Expect = 2.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 215 LYVMGVVLVTGF--CGYVIVEVRHMMKARRQKRLAEDPKA 252
L V+ L+ G CG+V++ RH M++R+Q + D
Sbjct: 340 LIVILAALIGGMLACGFVLL--RHAMRSRKQDLMLADHLV 377
>gnl|CDD|114176 pfam05436, MF_alpha_N, Mating factor alpha precursor N-terminus.
This family contains the N-terminal regions of the
Saccharomyces mating factor alpha precursor protein. All
proteins in this family contain one or more copies
pfam04648 further toward their C terminus.
Length = 86
Score = 27.6 bits (61), Expect = 2.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 252 AAAIAAAEAKAAQVVEETDDERDDIDDEIIVTHL 285
A+ +AA+ A + TDDE I E I+ +L
Sbjct: 9 ASLLAASSLGATRAAPVTDDESAQIPAEAIIGYL 42
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 29.2 bits (66), Expect = 2.9
Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 33/163 (20%)
Query: 9 ISCALGVSSV--GYVMIC--FGVVNAICSLLFGTLMKFIGRSPLMA---LGFIVHCCL-- 59
IS G+ V G++ G+ A +L FG L IGR ++ L F V L
Sbjct: 43 ISAEWGLDPVQLGFLFSAGLIGM--AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCA 100
Query: 60 ----IWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSS----------VGYVMICFGV 105
+ L++ R F GL G + VS VG + + +
Sbjct: 101 LATNVTQLLILR--------FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI 152
Query: 106 VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP 148
A+ L G L+ G L +G I L+ +L+ + P
Sbjct: 153 GAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195
>gnl|CDD|215306 PLN02566, PLN02566, amine oxidase (copper-containing).
Length = 646
Score = 29.1 bits (65), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 47 PLMALGFIVHCCLIWILVVWRPHPNNP 73
P++AL FI+ CC + L HP +P
Sbjct: 4 PILALVFILQCCFVASL----YHPLDP 26
Score = 29.1 bits (65), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 125 PLMALGFIVHCCLIWILVVWRPHPNNP 151
P++AL FI+ CC + L HP +P
Sbjct: 4 PILALVFILQCCFVASL----YHPLDP 26
>gnl|CDD|222389 pfam13801, Metal_resist, Heavy-metal resistance. This is a
metal-binding protein which is involved in resistance to
heavy-metal ions. The protein forms a four-helix hooked
hairpin, consisting of two long alpha helices each
flanked by a shorter alpha helix. It binds a metal ion
in a type-2 like centre. It contains two copies of an
LTXXQ motif.
Length = 125
Score = 27.2 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 233 EVRHMMKARRQKRL-------AEDPKAAAIAAAEAKAAQ 264
EVR + +A R R AE AA+ AA A+ +
Sbjct: 60 EVRPLRRALRAARRELLALLRAEPFDPAALRAALARQRE 98
>gnl|CDD|184061 PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional.
Length = 181
Score = 27.9 bits (62), Expect = 5.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 241 RRQKRLAEDPKAAAIAAAEAKAAQVVEETDDE-RDDIDDEI 280
+++ AE A+A A A+A ++V ET E + ++D I
Sbjct: 78 KQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAI 118
>gnl|CDD|217636 pfam03606, DcuC, C4-dicarboxylate anaerobic carrier.
Length = 456
Score = 27.7 bits (62), Expect = 7.6
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 73 PKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFI 132
P+ ++ + + + + +S G V+ + + T +KF+ +P +A+G I
Sbjct: 393 PRAVVVLAMQFASGLGNIISPTS-GVVV----ATLGMARVSPFTWVKFV--APPVAVGLI 445
Query: 133 VHCCLIWILV 142
+ + I V
Sbjct: 446 IVILVTIIAV 455
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related
nucleotide-binding proteins [Signal transduction
mechanisms].
Length = 154
Score = 26.8 bits (59), Expect = 8.5
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 215 LYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERD 274
L V+ + T + + + + AE+ A A A AEA VVE E
Sbjct: 40 LVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAEAAGVPVVETEVVEGS 99
Query: 275 DIDDEII 281
+EI+
Sbjct: 100 PSAEEIL 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.143 0.473
Gapped
Lambda K H
0.267 0.0845 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,186,098
Number of extensions: 1506924
Number of successful extensions: 3354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3233
Number of HSP's successfully gapped: 189
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (25.9 bits)