RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4795
(285 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 32.7 bits (73), Expect = 0.041
Identities = 17/180 (9%), Positives = 48/180 (26%), Gaps = 1/180 (0%)
Query: 91 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN 150
+G+ + + + G++ + G I+ ++ + ++
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEA-AFSNFRLWESVGFVIAYAYSTHL 209
+ F + L G + + + + S + +VG I
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 210 CARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEET 269
A + + + V + MM+ Q + + + +E
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Score = 30.4 bits (67), Expect = 0.26
Identities = 19/197 (9%), Positives = 43/197 (21%), Gaps = 15/197 (7%)
Query: 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN 72
+G+ + + + G++ + G I+ ++ + ++
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 73 PKIFFTISGLWGAYISCALGVSS---------------VGYVMICFGVVNAICSLLFGTL 117
+ F + L G + V V I LLF
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 118 MKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYG 177
M + L+ + + +
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Query: 178 TLFRRNKEAAFSNFRLW 194
T + + N LW
Sbjct: 236 TAKQIFMQYVLPNKLLW 252
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 32.4 bits (72), Expect = 0.061
Identities = 19/189 (10%), Positives = 46/189 (24%), Gaps = 2/189 (1%)
Query: 75 IFFTISGLWGAYISCALGVSS--VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFI 132
I + ++ +S G + + + + LFG L +G +
Sbjct: 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81
Query: 133 VHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFR 192
+ ++ P S + G+ + + F
Sbjct: 82 GMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFG 141
Query: 193 LWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKA 252
G V ++ + + V + C ++ + K
Sbjct: 142 RARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV 201
Query: 253 AAIAAAEAK 261
A +A +
Sbjct: 202 GANHSAFSL 210
Score = 27.8 bits (60), Expect = 1.7
Identities = 17/132 (12%), Positives = 32/132 (24%)
Query: 13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN 72
+ S G + + + + LFG L +G + + ++ P
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 73 PKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFI 132
S + G Y+ + V M L A
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 133 VHCCLIWILVVW 144
+ + V W
Sbjct: 160 IMFTINNQFVFW 171
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595
{Staphylococcus aureus, (strain Mu50 / ATCC 700699)
[TaxId: 1280]}
Length = 96
Score = 28.9 bits (65), Expect = 0.18
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 16/49 (32%)
Query: 27 VVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKI 75
+ + L++ IG ++V++R N +I
Sbjct: 61 LAETLSEATRSELVQVIGS----------------MIVIYRESKENKEI 93
Score = 28.9 bits (65), Expect = 0.18
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 16/49 (32%)
Query: 105 VVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKI 153
+ + L++ IG ++V++R N +I
Sbjct: 61 LAETLSEATRSELVQVIGS----------------MIVIYRESKENKEI 93
>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga
maritima [TaxId: 2336]}
Length = 327
Score = 27.7 bits (61), Expect = 1.5
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 142 VVWRPHPNNPKIFFTISGLWGVGDAV--WQTQVNGLYGTLFRRNKEAAFSNFRLWES 196
VWR + NP I + + NG + +FR + + S
Sbjct: 24 PVWR-YSKNPII--GRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRS 77
>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans
[TaxId: 162425]}
Length = 519
Score = 27.3 bits (60), Expect = 2.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 233 EVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERD 274
E + + A R + AIA +++AA ++ T D RD
Sbjct: 218 EHINRLVAIRAQADIMGTDLLAIARTDSEAATLITSTIDHRD 259
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 26.3 bits (56), Expect = 5.4
Identities = 20/152 (13%), Positives = 39/152 (25%), Gaps = 1/152 (0%)
Query: 131 FIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN 190
+ + + + GL G +G A
Sbjct: 148 ELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKL 207
Query: 191 FRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDP 250
L + A T +KL+ + V +K L E
Sbjct: 208 VSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKF-VDDEKILVEPA 266
Query: 251 KAAAIAAAEAKAAQVVEETDDERDDIDDEIIV 282
AA+AA + Q ++ + R + +++
Sbjct: 267 CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVI 298
>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 324
Score = 25.8 bits (55), Expect = 6.0
Identities = 18/223 (8%), Positives = 42/223 (18%), Gaps = 15/223 (6%)
Query: 56 HCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFG 115
G + V + I ++
Sbjct: 103 FYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQ 162
Query: 116 TLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGL 175
+ I R L + + + G
Sbjct: 163 GMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGRYKYQDKDGKNPESRFFGNPFS 222
Query: 176 YGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVR 235
+ R KE F+ L E + + + ++ + G G ++
Sbjct: 223 QLYMDRYWKEEHFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVI--- 279
Query: 236 HMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDD 278
+ ++L ++ + D D
Sbjct: 280 --LGMSSLEQLEQN----------LALVEEGPLEPAVVDAFDQ 310
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 25.5 bits (55), Expect = 9.0
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 60 IWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMK 119
I++L V +P PN P IF +IS A V ++ +G + + L
Sbjct: 42 IYLLKVGKPGPNKPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFY 101
Query: 120 FI 121
+
Sbjct: 102 VL 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.331 0.143 0.473
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,156,654
Number of extensions: 54709
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 21
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.4 bits)