BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4796
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 88/226 (38%), Gaps = 51/226 (22%)
Query: 51 LCEF--NSVVTSAKLQ-----FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFT 103
+ EF +S V A L+ + C C + + H +H G KPYKCP C F+
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 104 QKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVH 163
K L RH THTGEKP+ KC
Sbjct: 61 DKKDLTRHQRTHTGEKPY--------------------------------------KCPE 82
Query: 164 CSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFAC 223
C + S + L T T +K + C C + +++ H THTG+KP+ C
Sbjct: 83 CGKSFSQRAN------LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 224 SYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
C + ++ NL TH R H E+ Y C +C + L +H +
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 45/205 (21%)
Query: 39 PCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC 98
P K R L E T K + C C + + + H +H G KPYKCP C
Sbjct: 25 PECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 99 DHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPR 158
F+Q+ L+ H THTGEKP+AC C
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPEC-------------------------------- 111
Query: 159 RKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGD 218
S++ L T T +K + C C + + TH THTG+
Sbjct: 112 ----------GKSFSQLAH--LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIH 243
KP+ C C + ++ L H R H
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTH 184
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
+ C C + ++ H +H G KPYKCP C F+Q LQ+H THTGEKP+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 125 LCPYRASRKYYIT 137
C SR +++
Sbjct: 65 ECGKSFSRSDHLS 77
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY 249
+K + C C + + ++ H THTG+KP+ C C + +QSS+LQ H R H E+ Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 250 ACGKCAYRTAALPDLKLHLK 269
C +C + L H +
Sbjct: 62 KCPECGKSFSRSDHLSRHQR 81
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
KPYKCP C F+Q LQ+H THTGEKP+ C C
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPEC 38
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
+ C C + ++ H +H G KPYKCP C F++ L RH TH +K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 160 KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDK 219
KC C + S S + +H T T +K + C C + + ++ H THTG+K
Sbjct: 6 KCPECGKSFSQS-SNLQKH-----QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 220 PFACSYCDYTCNQSSNLQTHLRIHKTER 247
P+ C C + ++S +L H R H+ ++
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLH 267
+KTH+ HTG KP+ C CDY SS+L HLRIH ER + C C Y + L +H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 268 LKN 270
L++
Sbjct: 84 LRS 86
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 67 CLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
C C + + +K H+ H G KPYKC CD+ L +HL H+ E+PF C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 127 PYRASRKYYIT 137
PY + +T
Sbjct: 71 PYASRNSSQLT 81
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 44/127 (34%)
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXXXXX 151
P+KC C CF++K L+ H+ HTG KP+ C C Y A
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAA--------------------- 46
Query: 152 XXXXXPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTH 211
+D S + +H + +D++ F C CPYA++ + + H
Sbjct: 47 ------------------ADSSSLNKHLRI-----HSDERPFKCQICPYASRNSSQLTVH 83
Query: 212 VMTHTGD 218
+ +HTGD
Sbjct: 84 LRSHTGD 90
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
T K + C C YA + + H+ H+ ++PF C C Y SS L HLR H +
Sbjct: 32 TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Query: 248 EYACG 252
+ G
Sbjct: 92 GPSSG 96
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
+ C C Y A ++ HL H +P+KC C + L HL +HTG+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 220 PFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
P C C ++ L+TH+R H + Y C C Y A L HL+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
C + + + H+ H G KP++C C F+Q+ L H+ THTGEKPFAC +C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + TH+ HTG KPF C C +Q ++L H+R H E+ +A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A L H K +HL
Sbjct: 65 CDICGRKFATLHTRTRHTK-IHL 86
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
T +K F C C + H+ THTG+KPFAC C H +IH ++
Sbjct: 30 TGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Query: 248 E 248
+
Sbjct: 90 D 90
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
F C C + + ++ H+ +H G KP+ C C F RH H +K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
C + + + H+ H G KP++C C F+Q L +H+ THTGEKPFAC +C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + TH+ HTG KPF C C +Q + L H+R H E+ +A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A L H K +HL
Sbjct: 65 CDICGRKFATLHTRDRHTK-IHL 86
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
+ + + F C C + + H+ +H G KP+ C C F RH H
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLR 87
Query: 118 EK 119
+K
Sbjct: 88 QK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + + H+ HTG KPF C C ++S +L TH+R H E+ +A
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A + K H K +HL
Sbjct: 65 CDICGRKFARSDERKRHTK-IHL 86
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
+ H+ H G KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F++ L RH+ HTG+KPF C +C SR ++T
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 51
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
T +K F C C + ++ TH+ THTG+KPFAC C +S + H +IH ++
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Query: 248 E 248
+
Sbjct: 90 D 90
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
+ + + F C C + + H+ +H G KP+ C C F + +RH H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 118 EK 119
+K
Sbjct: 88 QK 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 194 VCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
VC C A + +K H + HTG+KPF C++ C + NL+TH+RIH +R Y C
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 252 --GKCAYRTAALPDLKLHL 268
C + A +LK H+
Sbjct: 96 PFDGCNKKFAQSTNLKSHI 114
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
C+ + A++ HL +H G + + C C F + L+RH L HTGEKPF C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 161 CVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGD 218
C C + + S++ H LV T +K F C C ++THV HTGD
Sbjct: 37 CAECGKAFV-ESSKLKRHQLV-----HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIH 243
+P+ C + C+ QS+NL++H+ H
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 66 LCLFCSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+C C +K H H G KP++C C F+ L+ H+ HTG++P+
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY-- 93
Query: 124 HLCPYRASRKYY 135
+CP+ K +
Sbjct: 94 -VCPFDGCNKKF 104
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 56 SVVTSAKLQFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRH 111
+V + + F C F C + ++ H+ H G +PY CP C+ F Q L+ H
Sbjct: 54 QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Query: 112 LLTHTGEK 119
+LTH K
Sbjct: 114 ILTHAKAK 121
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + + H+ HTG KPF C C ++S +L TH+R H E+ +A
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A + K H K +HL
Sbjct: 65 CDICGRKFARSDERKRHTK-IHL 86
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
+ H+ H G KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
T +K F C C + ++ TH+ THTG+KPFAC C +S + H +IH ++
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Query: 248 E 248
+
Sbjct: 90 D 90
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F++ L RH+ HTG+KPF C +C SR ++T
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLT 51
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 44 DMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFT 103
D+ RH R + + + F C C + + H+ +H G KP+ C C F
Sbjct: 21 DLTRHIR-------IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Query: 104 QKVVLQRHLLTHTGEK 119
+ +RH H +K
Sbjct: 74 RSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + + H+ HTG KPF C C ++S +L TH+R H E+ +A
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A + K H K +HL
Sbjct: 65 CDICGRKFARSDERKRHTK-IHL 86
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 79 AIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
++ H+ H G KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F+Q L RH+ HTG+KPF C +C SR ++T
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLT 51
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
T +K F C C + ++ TH+ THTG+KPFAC C +S + H +IH ++
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Query: 248 E 248
+
Sbjct: 90 D 90
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
+ + + F C C + + H+ +H G KP+ C C F + +RH H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 118 EK 119
+K
Sbjct: 88 QK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + + H+ HTG KPF C C ++S +L TH+R H E+ +A
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A + K H K +HL
Sbjct: 65 CDICGRKFARSDERKRHTK-IHL 86
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
+ H+ H G KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 170 SDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYT 229
SD S + H + T +K F C C + ++ TH+ THTG+KPFAC C
Sbjct: 17 SDSSNLTRHIRI-----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 CNQSSNLQTHLRIHKTERE 248
+S + H +IH +++
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F+ L RH+ HTG+KPF C +C SR ++T
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLT 51
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
+ + + F C C + + H+ +H G KP+ C C F + +RH H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 118 EK 119
+K
Sbjct: 88 QK 89
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCP 127
C+ V T +K HL +H G KPYKC CD F + L RH HTG KPF C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 128 YRASR 132
SR
Sbjct: 83 RSFSR 87
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 205 ACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALP 262
+ ++K H+ THTG+KP+ C++ CD+ +S L H R H + + CG C +
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89
Query: 263 DLKLHLK 269
L LH+K
Sbjct: 90 HLALHMK 96
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 186 TRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
T T +K + C C + + + H HTG KPF C C+ + ++S +L H++ H
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Query: 244 KT 245
+
Sbjct: 99 QN 100
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 96 PHCDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYIT 137
P C +T+ L+ HL THTGEKP+ C C +R +R +T
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT 64
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + + H+ HTG KPF C C ++S +L TH+R H E+ +A
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A + K H K +HL
Sbjct: 64 CDICGRKFARSDERKRHTK-IHL 85
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
+ H+ H G KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 73
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
T +K F C C + ++ TH+ THTG+KPFAC C +S + H +IH
Sbjct: 29 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F++ L RH+ HTG+KPF C +C SR ++T
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 50
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 218 DKPFAC--SYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
++P+AC CD ++S L H+RIH ++ + C C + L H++
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
+ + + F C C + + H+ +H G KP+ C C F + +RH H
Sbjct: 27 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + + H+ HTG KPF C C ++S +L TH+R H E+ +A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A + K H K +HL
Sbjct: 65 CDICGRKFARSDERKRHTK-IHL 86
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 79 AIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
+ H+ H G KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
T +K F C C + ++ TH+ THTG+KPFAC C +S + H +IH ++
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Query: 248 E 248
+
Sbjct: 90 D 90
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F++ L RH+ HTG+KPF C +C SR ++T
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 51
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 218 DKPFAC--SYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
++P+AC CD ++S L H+RIH ++ + C C + L H++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
+ + + F C C + + H+ +H G KP+ C C F + +RH H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 118 EK 119
+K
Sbjct: 88 QK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ACP + + + H+ HTG KPF C C ++S +L TH+R H E+ +A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
C C + A + K H K +HL
Sbjct: 65 CDICGRKFARSDERKRHTK-IHL 86
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
+ H+ H G KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
T +K F C C + ++ TH+ THTG+KPFAC C +S + H +IH
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F++ L RH+ HTG+KPF C +C SR ++T
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 51
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 218 DKPFAC--SYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
++P+AC CD ++S L H+RIH ++ + C C + L H++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
+ + + F C C + + H+ +H G KP+ C C F + +RH H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
K + C C + +Y + +H HTG+KP+ C+ C N+ +NL+TH RIH E+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
KPYKC C F K L H HTGEKP+ C++C + +R
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
+ C C + + +H + H G KPY+C C F + L+ H H+GEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
DKP+ C C + NL +H +H E+ Y C C + +LK H +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 89 GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXX 148
G +CP C F K L+ H HTGEKPF C C RK +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA------- 56
Query: 149 XXXXXXXXPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYI 208
R C++ SE + F C C + +
Sbjct: 57 ----------RNCMNRSEQV------------------------FTCSVCQETFRRRMEL 82
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL 240
+ H+++HTG+ P+ CS C Q +LQ+H+
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 53 EFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL 112
E + + ++ F C C R+ ++ H+ SH G PYKC C F QK LQ H+
Sbjct: 55 EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Query: 113 LT-HTG 117
+ H+G
Sbjct: 115 IKLHSG 120
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLR---IHKTEREYACGKCAYRTAALPD 263
Y+K H HTG+KPF C C + NL H ++++E+ + C C +
Sbjct: 22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME 81
Query: 264 LKLHL 268
L+LH+
Sbjct: 82 LRLHM 86
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 184 NATRTDKKKFVCFACPYATQYACYI-KTHVMTHTG-------DKPFACSYCDYTCNQSSN 235
N T +K F C C CY K +++ H ++ F CS C T +
Sbjct: 27 NRKHTGEKPFECPKCG-----KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME 81
Query: 236 LQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMH 272
L+ H+ H E Y C C+ + DL+ H+ +H
Sbjct: 82 LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 31/98 (31%)
Query: 67 CLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHC------------------------- 101
C C ++ +K H H G KP++CP C C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 102 ------FTQKVVLQRHLLTHTGEKPFACHLCPYRASRK 133
F +++ L+ H+++HTGE P+ C C + +K
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
F C FC + H +HLG++P CP C CF + + RHL H +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
++PF C++C T +S L H R H R +C +C ++ HLK
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
++ F C C + A + H H G +P +C C S + HL++H+ +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 EFNSVVTSAKLQFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQR 110
+ +S + + + C F C + +K H H G KP++C C F++ L+
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 111 HLLTHTGEKPFAC 123
H THTGEKPF+C
Sbjct: 85 HTRTHTGEKPFSC 97
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 60 SAKLQFLCLF--CSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTH 115
S K F+C + C+ ++ H H G KPY+C C+ F++ L+RH H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 116 TGEKPFACHLCPYRASRKYYI 136
TG KPF C C + SR ++
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHL 82
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG--KCAYRTAALPDLK 265
+K H HTG KPF C C ++S +L+TH R H E+ ++C C + A +L
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Query: 266 LHLKNMH 272
H NMH
Sbjct: 114 RH-HNMH 119
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 56/159 (35%), Gaps = 50/159 (31%)
Query: 91 KPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYITXXXXXXXXX 146
+P+ C P C+ + + LQ H HTGEKP+ C C R SR
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSR-------------- 50
Query: 147 XXXXXXXXXXPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYAC 206
SD L T K F C C +
Sbjct: 51 -----------------------SDQ-------LKRHQRRHTGVKPFQCKTCQRKFSRSD 80
Query: 207 YIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIH 243
++KTH THTG+KPF+C + C +S L H +H
Sbjct: 81 HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 188 TDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIH 243
++K+ F+C C +++ H HTG+KP+ C + C+ ++S L+ H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 244 KTEREYACGKCAYRTAALPDLKLHLK 269
+ + C C + + LK H +
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTH 115
F C C + +K H +H G KP+ C P C F + L RH H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYR 129
C T + H+S HLG +PY C C F K L H+ HTG KP+ C++C R
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHL 268
H+ H G +P+ C C +L H++IH + Y C CA R H+
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYI 136
S G K Y C C FT K RH+ H G +P+ C +C + K+++
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHL 53
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
+GDK + C C + S H+ +H R Y CG C + L H+K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
F C C + HL H +PY C +C F QK +++H HTGEKP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 125 LC 126
+C
Sbjct: 62 VC 63
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 193 FVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
F C C + + + + TH++ H+ +P+ C YC +Q S+++ H IH E+ + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 253 KCAYRTAALPDLKLH 267
C + +L H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+D + + C C +K H HTG+KP C C +QSSNL TH R H
Sbjct: 25 SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 67 CLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
C +C + +K H H G KP+KC C F+Q L H HTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRK 133
+ C C F + L HLL H+ +P+ C C R +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 64 QFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEK 119
+++C F C ++ HLS H G KP+ C C+ FT L RH LTHTGEK
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 120 PFAC 123
F C
Sbjct: 63 NFTC 66
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 191 KKFVC-FA-CPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTE 246
K+++C FA C A ++ H+ HTG+KPF C C+ +L H H E
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 247 REYACGK--CAYRTAALPDLKLHLKNMH 272
+ + C C R ++K H H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 205 ACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALP 262
+ ++K H+ THTG+KP+ C + C + +S L H R H R + C KC +
Sbjct: 21 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 80
Query: 263 DLKLHLKN 270
L LH+K
Sbjct: 81 HLALHMKR 88
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCP 127
C T +K HL +H G KPY C C F + L RH HTG +PF C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 128 YRASR 132
SR
Sbjct: 74 RAFSR 78
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 186 TRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
T T +K + C C + + + H HTG +PF C CD ++S +L H++ H
Sbjct: 30 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 98 CDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYIT 137
C +T+ L+ HL THTGEKP+ C C ++ +R +T
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELT 55
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 223 CSY--CDYTCNQSSNLQTHLRIHKTEREYAC--GKCAYRTAALPDLKLHLKN 270
C Y C T +SS+L+ HLR H E+ Y C C ++ A +L H +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
C + + H H G +P++C CD F++ L H+ H
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 205 ACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALP 262
+ ++K H+ THTG+KP+ C + C + +S L H R H R + C KC +
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 79
Query: 263 DLKLHLKN 270
L LH+K
Sbjct: 80 HLALHMKR 87
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCP 127
C T +K HL +H G KPY C C F + L RH HTG +PF C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 128 YRASR 132
SR
Sbjct: 73 RAFSR 77
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 186 TRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
T T +K + C C + + + H HTG +PF C CD ++S +L H++ H
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 98 CDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYIT 137
C +T+ L+ HL THTGEKP+ C C ++ +R +T
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELT 54
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 70 CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
C + + H H G +P++C CD F++ L H+ H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 76 ARIAIKNHLSSHLGWKPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHL 125
A+ + NH+ H G KP+ CP C F + L+ H THTGEKPF C
Sbjct: 74 AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 170 SDMSEIIEHCLVCPNATRTDKKKFVCF--ACP-----YATQYACYIKTHVMTHTGDKPFA 222
S M E++ H + + ++ VC+ CP + +Y + H+ HTG+KPF
Sbjct: 36 STMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK--LVNHIRVHTGEKPFP 92
Query: 223 CSY--CDYTCNQSSNLQTHLRIHKTEREYAC--GKCAYRTAALPDLKLHL 268
C + C +S NL+ H R H E+ + C C R A D K H+
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTER 247
F CP+ + +K H THTG+KPF C + CD SS+ + H+ +H +++
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 58 VTSAKLQFLCLF--CSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLL 113
V + + F C F C + +K H +H G KP+KC CD F ++H+
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Query: 114 THTGEK 119
HT +K
Sbjct: 144 VHTSDK 149
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 94 KCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+CP F K L H+ HTGEKPF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPC 93
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 90 WKPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
+PY CP CD F++ L RH+ HTG+KPF C +C SR ++T
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 13/66 (19%)
Query: 191 KKFVCFACPYATQYACYIKT-------------HVMTHTGDKPFACSYCDYTCNQSSNLQ 237
+ + P YAC +++ H+ HTG KPF C C ++S +L
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 238 THLRIH 243
TH+R H
Sbjct: 67 THIRTH 72
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 219 KPFAC--SYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
+P+AC CD ++S L H+RIH ++ + C C + L H++
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 79 AIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
+ H+ H G KP++C C F++ L H+ THT
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
Y+ H+ THTG+KP+ C +C+Y Q ++L+ HL H
Sbjct: 19 YLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 89 GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRK 133
G +C +C F L HL THTGEKP+ C C Y A++K
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQK 45
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 67 CLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
C +C + + HL +H G KPYKC C++ QK L+ HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%)
Query: 217 GDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMH 272
G CSYC + L HLR H E+ Y C C Y A L+ HL+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 164 CSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFAC-------PYATQYACYIKTHVMTHT 216
CS+ S +++ H + ++K+FVC P+ QY + H+ HT
Sbjct: 9 CSQEFDS-QEQLVHH--INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVV--HMRRHT 63
Query: 217 GDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
G+KP C++ C + ++ NL+THLR H E+ Y C
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 208 IKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHL-RIHKTEREYACG--KCAYRTAALP 262
+KTH+ +HTG+KP+ C + C + +S+ H R H E+ Y C C R
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 263 DLKLHLKNMH 272
L+ H+K +H
Sbjct: 145 SLRKHVKTVH 154
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 80 IKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHL-LTHTGEKPFACHL 125
+K HL SH G KPY C H C F+ +H TH+ EKP+ C L
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 83 HLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
H+ H G KP+KC C +++ L+ HL +HTGEKP+ C
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 59 TSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
+ K +F+C FC T + H +H +PY C C F ++ L+ H H+ E
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 119 KPFACHLC 126
KPF C C
Sbjct: 72 KPFKCQEC 79
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY 249
KK+F+C C + + H THT ++P+ C C + +L+ H IH E+ +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 250 ACGKCAYRTAALPDLKLHLKNMHL 273
C +C L +H K +H+
Sbjct: 75 KCQECGKGFCQSRTLAVH-KTLHM 97
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 180 LVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH 239
L+ T TD++ + C C A + +++ H H+ +KPF C C QS L H
Sbjct: 33 LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Query: 240 LRIH 243
+H
Sbjct: 93 KTLH 96
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 90 WKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
KP++C C F++ L H+ THTGEKPFAC +C + +R
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRI 242
K F C C + ++ TH+ THTG+KPFAC C +S + H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHL 273
KPF C C ++S +L TH+R H E+ +AC C + A + K H H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 64 QFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEK 119
+++C F C ++ HL H G KP+ C C+ FT L RH LTHTGEK
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 120 PFAC 123
F C
Sbjct: 72 NFTC 75
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 191 KKFVC-FA-CPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTE 246
K+++C FA C A ++ H+ HTG+KPF C C+ +L H H E
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 247 REYACGK--CAYRTAALPDLKLHLKNMH 272
+ + C C R ++K H H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 65 FLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTG 117
++C F C +K H SH PY+CPH CD F+ L+RH H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
SS KP++C CD F Q+ L H + HTGEKP
Sbjct: 5 SSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+ T +KPF C CD + Q S L +H IH E+
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKP 220
++ T +K F C C + + + +H M HTG+KP
Sbjct: 4 GSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 192 KFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLR 241
K++C C + +K H+ THT +P+ C+YC+++ NL H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 64 QFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL 112
+++C C +K H+ +H +PY C +C+ F K L +H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKN 270
+ C C + S L+ H+R H R Y C C + +L H+K+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C F+QK +L H THTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C+ C T +Q S L H R H E+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 189 DKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+++++ C C + ++ + H THTG+KP+ C C Q S+L H R+H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
+ YKC C F+ L +H THTGEKP+ C C
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 62 KLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
+ ++ C C + + H +H G KPYKC C F Q+ L H HTG P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCA 255
+ + C C + + SS+L H R H E+ Y C +C
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECG 53
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT 245
+K + C C A + + H HTG+KP+ C C +Q+S L H RIH +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
KPY C C F++ +L +H HTGEKP+ C C
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
+ C+ C + + H H G KPYKC C F+Q L H HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCA 255
+KP+ C C ++SS L H R+H E+ Y C +C
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECG 49
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 59 TSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
+S C C + + H SH G KPY CP C F +K + H+ +H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 119 --KPFACHLCPYRASR 132
KP+ C C SR
Sbjct: 62 VGKPYICQSCGKGFSR 77
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 194 VCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE--REYAC 251
C C + ++ H ++H+G+KP++C C + + H+R H + Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 252 GKCAYRTAALPDLKLHLKNMH 272
C + L H+K +H
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVH 89
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 89 GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRK 133
G C C F L RH L+H+GEKP++C +C R RK
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK 48
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C FTQK L +H THTGEKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C FTQ L RH HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C FTQ L RH HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F+Q L RH HTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C+ C +Q+S L H RIH E+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 56 SVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
++ ++ ++C+ C +++ H + H K Y C +C+ F +H + H
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 116 TGEKPFACHLC 126
TGE+ + C C
Sbjct: 74 TGERRYQCLAC 84
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 193 FVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
++C C + ++ H H+ +K + C YC+ + H H ER Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 253 KCAYRTAALPDLKLHLKNMH 272
C + H+K++H
Sbjct: 83 ACGKSFINYQFMSSHIKSVH 102
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F QK L +H HTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C C Q +NL H RIH E+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
S G KPY C C F K L H+ THTGEKP
Sbjct: 3 SGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+G KP+ CS C S L H+R H E+
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDKP 220
K + C C A + Y+ H+ THTG+KP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 205 ACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIH 243
+ ++K H THTG+KPF+CS+ C+ +S L H R H
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
I++H+ SH P C + + L+ H THTGEKPF+C
Sbjct: 15 IRSHICSH--------PGCGKTYFKSSHLKAHTRTHTGEKPFSC 50
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG--KCAYRTAALPDLK 265
I++H+ +H G C T +SS+L+ H R H E+ ++C C R A +L
Sbjct: 15 IRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 266 LHLK 269
H +
Sbjct: 67 RHRR 70
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C FTQ L RH HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER--EYACGKCAYRTAALPDLKLHLKNM 271
TH+G+KP+ C C QS ++ H+ TE ++ C C A DL +HL+
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 272 HLY 274
H Y
Sbjct: 69 HSY 71
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 86 SHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPY 128
+H G KPY+C C FTQ ++ H+L E H CP+
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH-CPH 50
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F+Q L RH HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
KP+ C+ C +Q+S L H R+H E+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP+KC C F Q + L HL HTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KPF C C Q+ +L +HLRIH E+
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C FTQ L H HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C+ C Q+S+L H RIH E+
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C FTQ L RH HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 19/35 (54%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
SS KPYKCP C + K L HL HTGEK
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+ + KP+ C C Y +NL HLR H E+
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F + L RH L HTGEKP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C F QK L RH HTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C+ C + Q S+L H RIH E+
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRH 111
F+C C+ + +K H SH KPY C C+ FT++ +L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRK 133
+ C C F ++ L+RH +HT EKP+ C LC +R+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 193 FVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH 239
FVC C A ++K H +HT +KP+ C C+ + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMH 272
F C C + +L+ H R H E+ Y CG C L H + +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP+KC C + Q+V L +H HTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KPF C C + NQ +L H R+H E+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C F+ K L H+ TH+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ CS C + S L H+R H E+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F L RH HTGEKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+ KPF CS C+Y SNL+ H+ H TE+
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP+KC C FTQ L H HTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KPF C C Q+S L +H R+H E+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
K +KC CD CF+Q L+ H H GEKP
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHL-RIHKTE---REYACGKCAYRTAALPDLKLHLK 269
THTG+KP+ACS+CD T Q L H R H + C KC + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 270 N 270
N
Sbjct: 69 N 69
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 86 SHLGWKPYKCPHCDHCFTQKVVLQRHL 112
+H G KPY C HCD F QK +L H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHF 35
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPY C HC F LQRH+ HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
KP+ C +C LQ H+RIH E+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLR 241
++ H H D+PF C+YC + Q SNL H++
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 236 LQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMH 272
L+ H RIH T+R + C C++ T +L H+K H
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F + L H TH+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C F LQ H HTGEKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C C S LQ H RIH E+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F+Q L +H HTGEKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C C +Q+++L H R+H E+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C FT + L H HTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C+ C SNL TH +IH E+
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F+QK L H+ HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C FT+K L H HTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ CS C + + S L H +IH E+
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F+ L +H +THT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPYKC C FT+K L H +HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C FTQ L H HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIH 243
+KP+ C+ C Q+S+L H RIH
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
S G KPY+C C F+Q+ L H HTG P
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+G+KP+ C C + +Q +L H R+H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP++C C F K L H THTGEKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KPF CS C N SNL H R H E+
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP++C C FTQ L H HTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KPF C C Q+S+L +H R+H E+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C +C F L RH HTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C YC S+ L H RIH E+
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C + K L H HTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C C N NL H ++H ER
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP+KC C F+++ L H HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F Q L+ H+L HTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F L H + HTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ C+ C SNL TH IH E+
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP+KC C F + L RH + HT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KPF C+ C + + SS L TH RIH E+
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP++C C F+ L H HTGEKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
S G KPY C C FTQ L H HTGE
Sbjct: 3 SGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
+G+KP+ C C QSS L H R+H E
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+G KP C+ C T QSS L H RIH E+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
S G KP C C F Q L +H H+GEKP
Sbjct: 3 SGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
K YKC C F++ L +H HTGEKP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHL-LTHTGEKP 120
KPY+C C F Q L RH HTGEKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
PY+C C F++K L H TH GEKP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
SS KPYKC C F + L H + HTGEK
Sbjct: 5 SSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
KPF C++C + NL TH RIH E+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KP++C HC F K L H HTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
+P+KC C F Q L +H HTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C F+ L H + HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
K ++C C FT+K L H HTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F+ + L H HTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F + L H + HTGEKP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP+ C C F+ + L +H HTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F +K L H HTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+KP+ CS C + + S L H RIH E
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
+PY C C FT + L +H HTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
K +KC C FTQ L H HTGEKP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
K F C+ C T QSS+L H RIH E+
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPYKC C FT K L+ H HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
P+KC C F+ L +H L H GE P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
S G KPY+C C F K L H THTGE
Sbjct: 3 SGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
KPY+C C F K L H THTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+KP+ C+ C N SNL H R H E + G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
PYKC C+ F+ K+ L H HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
YKC C F+Q LQ H HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+K + C C +QSS+LQTH R+H E+
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
P KC C FT L+RHL H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 220 PFACSYCDYTCNQSSNLQTHLRIHKTER 247
P C C S NL+ HLRIH E+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
Y+C C F QK L H H GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.89, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 17/36 (47%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
S G KPY C C FT K L H HTG KP
Sbjct: 3 SGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F+ L +H H+GEKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
+PY+C C F K L H +HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+ K F C YC+ +LQ HLRIH E+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
SS K + C +C+ F K LQ HL HT EK
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
Y+C C F +K L H HTGEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPYKC C + +++ L H HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C F L +H H+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
S G KPY C C F+ K L H HTGEK
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+G+KP+ C+ C + S L H RIH E+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
S G KP+ C C+ F+ K L H TH EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+G+KPF CS C+ + S L H + H E+
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 65 FLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTG 117
++C F C +K H SH PY+CPH CD F+ L+RH H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 65 FLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTG 117
++C F C +K H SH PY+CPH CD F+ L+RH H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTH 115
P+KC CD FTQ+ L +H TH
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTH 35
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLR 241
K + C YC+Y SSNL+TH++
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIK 23
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
K C C F L RH L+H+GEKP++
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 91 KPYKC--PHCDHCFTQKVVLQRHLLTHTGEK 119
+P+ C +C FT+ LQRH THTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
KPY C C F K L H THTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F L H HTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
K ++C C FT K L +H HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F + L H HTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPY+C C F Q L +H HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C F+ K L H +HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY+C C F+ + L H H+G+KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPYKC C + +++ L H H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIH 243
TG KPF C CD++ ++S +L H + H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KP++C C F++ L+ H THTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
KPF C C ++S +L+TH R H E+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F +H HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
S G PY+C C F +K L H TH GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 27.3 bits (59), Expect = 8.4, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
+G+ P+ CS C N+ L +H R H E
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
P+ C C FT K L H HTGE+P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPY+C +C F+ RHL TH +K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KP +C C FTQ L H+ HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLR 241
K + C YC++ SSNL+TH++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPY C C FT + L +H HT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
+KP++C+ C S++L HLR+H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 28.1 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
K +KCPHCD F Q L+ HL H +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
Score = 27.3 bits (59), Expect = 8.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIH 243
K C +CD NQ NL+ HL+IH
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIH 25
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
+G+KP+ C+ C + S+ TH RIH E
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KP+KC C F H +H+GEKP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
KPY+C C F + L H TH+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 462
Length = 88
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Query: 221 FACSYCDYTCNQSSNLQTHLRIHKTE----------REYACGKCAYRTAALPDLK 265
+ C +CD ++ L +HL IH E R+ K Y A D K
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAFADFK 80
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
KPYKC C F L +H H+GE+P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
++PF C+ C + S+L HLR+H E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2ELP|A Chain A, Solution Structure Of The 13th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 85 SSHLGWKPYKCPHCDHCFTQK-VVLQRHLLTHTGEK 119
SS + KCP+CD F + LQRH+ H G K
Sbjct: 2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
S G + Y+C C F QK L H HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 27.3 bits (59), Expect = 9.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
S G KPY CP C F +K + H+ +H G
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,748,384
Number of Sequences: 62578
Number of extensions: 267943
Number of successful extensions: 1430
Number of sequences better than 100.0: 174
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 647
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)