RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4796
(274 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 81.0 bits (201), Expect = 8e-19
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 32/180 (17%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS 142
+ G KPY CP C F++ L H THTGEKP+ C C S K +T H
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH--- 68
Query: 143 LLSALLLQHFLASQPRR--------KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFV 194
+R KC C + S + + H T T +K +
Sbjct: 69 ---------------QRTHTGEKPYKCPECGKSF-SQRANLRAH-----QRTHTGEKPYA 107
Query: 195 CFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
C C + +++ H THTG+KP+ C C + ++ NL TH R H E+ Y C +C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 62.1 bits (152), Expect = 5e-12
Identities = 45/161 (27%), Positives = 61/161 (37%), Gaps = 44/161 (27%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS 142
H +H G KPYKCP C F+Q+ L+ H THTGEK PY
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK-------PY-------------- 106
Query: 143 LLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYAT 202
C C + S + + H T T +K + C C +
Sbjct: 107 -----------------ACPECGKSFSQL-AHLRAH-----QRTHTGEKPYKCPECGKSF 143
Query: 203 QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+ TH THTG+KP+ C C + ++ L H R H
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 61.3 bits (150), Expect = 1e-11
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 32/161 (19%)
Query: 102 FTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRR-- 159
GEKP+AC C SR ++ H +R
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH------------------QRTH 44
Query: 160 ------KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVM 213
KC C + SD ++ H T T +K + C C + ++ H
Sbjct: 45 TGEKPYKCPECGKSF-SDKKDLTRH-----QRTHTGEKPYKCPECGKSFSQRANLRAHQR 98
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
THTG+KP+AC C + +Q ++L+ H R H E+ Y C +C
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Score = 48.6 bits (117), Expect = 3e-07
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
H +H G KPYKCP C F+++ L H THTG+K
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 76.4 bits (189), Expect = 7e-18
Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 42/158 (26%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSA 146
G +CP C F K L+ H HTGEKPF C C RK + H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE------ 55
Query: 147 LLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYAC 206
R C++ SE + F C C +
Sbjct: 56 -----------ARNCMNRSE------------------------QVFTCSVCQETFRRRM 80
Query: 207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH-LRIH 243
++ H+++HTG+ P+ CS C Q +LQ+H +++H
Sbjct: 81 ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 55.6 bits (135), Expect = 3e-10
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVL---QRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
H H G KP++CP C C+ +K L + + E+ F C +C R+ + H
Sbjct: 26 HNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 49.8 bits (120), Expect = 4e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+ ++ F CS C T + L+ H+ H E Y C C
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 48.3 bits (116), Expect = 1e-07
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+G C C L+ H R H E+ + C KC
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKC 41
Score = 47.5 bits (114), Expect = 3e-07
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 206 CYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLR---IHKTEREYACGKC 254
Y+K H HTG+KPF C C + NL H ++++E+ + C C
Sbjct: 21 YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC 72
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLL-THTGEK 119
H+ SH G PYKC C F QK LQ H++ H+G
Sbjct: 85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 66.0 bits (162), Expect = 2e-14
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE--YACGKCAYRTAALPDLKL 266
+ TH+G+KP+ C C QS ++ H+ TE + C C A DL +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 267 HLKNMH 272
HL+ H
Sbjct: 64 HLRKQH 69
Score = 65.2 bits (160), Expect = 4e-14
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE--KPFACHLCPYRASRKYYITA 138
+ +H G KPY+C C FTQ ++ H+L E F C C +RK +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 139 HL 140
HL
Sbjct: 64 HL 65
Score = 51.0 bits (123), Expect = 5e-09
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 81 KNHLSSHLG--WKPYKCPHCDHCFTQKVVLQRHLLT-HTGEKPFA 122
K H+ + CPHCD +K L HL H+ P +
Sbjct: 32 KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 209 KTHVMTHTG--DKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYA 250
K H++ F C +CD + S+L HLR H +
Sbjct: 32 KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 37.1 bits (87), Expect = 5e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
TH+GEKP+ C++C R ++ + H
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMH 34
Score = 28.6 bits (65), Expect = 0.48
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 235 NLQTHLRIHKTEREYACGKCAYRTAALPDLKLH 267
+ + R H E+ Y C C R +K+H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMH 34
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 64.8 bits (159), Expect = 4e-14
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHL 140
SS P KC C + + K L+ H H ++PF C+ C + + ++ H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 64.1 bits (157), Expect = 7e-14
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
+ + P CS C Y+C+ + L+ H RIH T+R + C C++ T +L H+K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 62.1 bits (152), Expect = 4e-13
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
++ + C C Y+ ++ H H D+PF C+YC + Q SNL H++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 59.0 bits (144), Expect = 4e-12
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
C CSY +++ A++ H H +P+KC +C Q L +H+ G+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 37.1 bits (87), Expect = 4e-04
Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 44/111 (39%)
Query: 114 THTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMS 173
+ + P C C Y S K + H +HC++
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHER--------------------IHCTD------- 35
Query: 174 EIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ F C C + T+ + H+ GD S
Sbjct: 36 -----------------RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 62.5 bits (153), Expect = 8e-13
Identities = 41/159 (25%), Positives = 57/159 (35%), Gaps = 50/159 (31%)
Query: 91 KPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYITAHLNSLLSA 146
+P+ C P C+ + + LQ H HTGEKP+ C C R SR + H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH------- 57
Query: 147 LLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYAC 206
+R T K F C C +
Sbjct: 58 -----------QR--------------------------RHTGVKPFQCKTCQRKFSRSD 80
Query: 207 YIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIH 243
++KTH THTG+KPF+C + C +S L H +H
Sbjct: 81 HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 55.2 bits (134), Expect = 4e-10
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
K H H G KP++C C F++ L+ H THTGEKPF+C
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Score = 53.3 bits (129), Expect = 2e-09
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
K H HTG KPF C C ++S +L+TH R H E+ ++C
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 52.9 bits (128), Expect = 3e-09
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 81 KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
+ H H G KPY+C C+ F++ L+RH HTG KPF C C + SR ++
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 139 H 139
H
Sbjct: 85 H 85
Score = 51.0 bits (123), Expect = 1e-08
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL 266
+ H HTG+KP+ C + C+ ++S L+ H R H + + C C + + LK
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 267 H 267
H
Sbjct: 85 H 85
Score = 38.3 bits (90), Expect = 4e-04
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 216 TGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
+ +PF C+Y C+ + S+LQ H R H E+ Y C
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC 39
Score = 33.3 bits (77), Expect = 0.025
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 81 KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTH 115
K H +H G KP+ C P C F + L RH H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 63.5 bits (155), Expect = 9e-13
Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 39/174 (22%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLN 141
+ CD F+ L H+ P + + Y
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG-------PEQNNHVCY------ 61
Query: 142 SLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFA--CP 199
+C + + +++ H T +K F C C
Sbjct: 62 ----------------WEECPREGKSFKA-KYKLVNH-----IRVHTGEKPFPCPFPGCG 99
Query: 200 YATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
+ +K H THTG+KPF C + CD SS+ + H+ +H +++
Sbjct: 100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 52.7 bits (127), Expect = 7e-09
Identities = 27/156 (17%), Positives = 41/156 (26%), Gaps = 37/156 (23%)
Query: 98 CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQP 157
+ C S + + H+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTM--------E------ 48
Query: 158 RRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTG 217
H P ++ E C K F Y + H+ HTG
Sbjct: 49 -----HVGGPEQNNHVCYWEECPRE------GK----SFKAKY------KLVNHIRVHTG 87
Query: 218 DKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
+KPF C + C +S NL+ H R H E+ + C
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Score = 50.7 bits (122), Expect = 3e-08
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFAC 123
K H +H G KP+KC CD F ++H+ HT +K
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 49.6 bits (119), Expect = 9e-08
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACH 124
NH+ H G KP+ CP C F + L+ H THTGEKPF C
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Score = 45.7 bits (109), Expect = 2e-06
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 80 IKNHLSSHLGWKPYK---------CPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
+ H++ P + CP F K L H+ HTGEKPF C
Sbjct: 41 LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94
Score = 44.6 bits (106), Expect = 4e-06
Identities = 7/47 (14%), Positives = 11/47 (23%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAY 256
+ CD T + L TH+ + Y
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Score = 29.6 bits (67), Expect = 0.57
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 209 KTHVMTHTGDKPFACS 224
K H+ HT DK S
Sbjct: 139 KKHMHVHTSDKSGPSS 154
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS +G K +KC CD CF+Q L+ H H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 49.5 bits (119), Expect = 9e-09
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + G+K + C CD +Q+S+L+ H +H E+
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.37
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GEK + C C S+ + H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 24.8 bits (55), Expect = 5.1
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ +K + C C A ++ H H G+KP S
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 60.1 bits (147), Expect = 4e-12
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 44/138 (31%)
Query: 86 SHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLS 145
S P+KC C CF++K L+ H+ HTG KP+ C C Y A+ + H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH------ 55
Query: 146 ALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYA 205
R +H +D++ F C CPYA++ +
Sbjct: 56 ------------LR--IH------------------------SDERPFKCQICPYASRNS 77
Query: 206 CYIKTHVMTHTGDKPFAC 223
+ H+ +HTGD +
Sbjct: 78 SQLTVHLRSHTGDSGPSS 95
Score = 58.6 bits (143), Expect = 1e-11
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
H+ H G KPYKC CD+ L +HL H+ E+PF C +CPY + +T H
Sbjct: 27 HMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 58.6 bits (143), Expect = 2e-11
Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 44/139 (31%)
Query: 114 THTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMS 173
+ P C +C SRK + H H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTH--------------------MRCH---------- 31
Query: 174 EIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQS 233
T K + C C YA + + H+ H+ ++PF C C Y S
Sbjct: 32 --------------TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS 77
Query: 234 SNLQTHLRIHKTEREYACG 252
S L HLR H + + G
Sbjct: 78 SQLTVHLRSHTGDSGPSSG 96
Score = 57.0 bits (139), Expect = 5e-11
Identities = 26/69 (37%), Positives = 32/69 (46%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT 245
+ C C +KTH+ HTG KP+ C CDY SS+L HLRIH
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 246 EREYACGKC 254
ER + C C
Sbjct: 62 ERPFKCQIC 70
Score = 53.2 bits (129), Expect = 1e-09
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 67 CLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
C C Y A ++ HL H +P+KC C + L HL +HTG+ +
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 59.3 bits (144), Expect = 5e-12
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIH---KTEREYACGKCAYRTAALPDLKLHLKNM 271
+G C C +TC Q ++L H R H + C C R + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 272 H 272
H
Sbjct: 62 H 62
Score = 56.6 bits (137), Expect = 5e-11
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHT---GEKPFACHLCPYRASRKYYITAHL 140
G +C C QK L H H F C C R + + AH
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 53.2 bits (128), Expect = 8e-10
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHT---GDKPFACSYCDYTCNQSSNLQTHLRIHK 244
+ C C + + + H H F C +C + ++ H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 245 TEREYACGKCA 255
A + +
Sbjct: 63 PALLLAPQESS 73
Score = 47.8 bits (114), Expect = 8e-08
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 3/66 (4%)
Query: 65 FLCLFCSYVATARIAIKNHLSSH---LGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPF 121
C C + + ++ H H + + C C F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 122 ACHLCP 127
A
Sbjct: 68 APQESS 73
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 59.2 bits (144), Expect = 9e-12
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 81 KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
K HL +H G KPYKC CD F + L RH HTG KPF C +C SR ++
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
Query: 139 HL 140
H+
Sbjct: 94 HM 95
Score = 54.6 bits (132), Expect = 4e-10
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL 266
K H+ THTG+KP+ C++ CD+ +S L H R H + + CG C + L L
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
Query: 267 HLK 269
H+K
Sbjct: 94 HMK 96
Score = 46.1 bits (110), Expect = 5e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
H HTG KPF C C+ + ++S +L H++ H
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 42.6 bits (101), Expect = 9e-06
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 91 KPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ + C P C +T+ L+ HL THTGEKP+ C
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC 48
Score = 40.7 bits (96), Expect = 4e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
H H G KP++C C+ F++ L H+ H
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G PYKC C+ F+ K+ L H HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + G P+ CS C+ + + L H R+H E+
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.12
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ G P+ C C S K + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.6 bits (140), Expect = 2e-11
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLT--HTGEKPFACHLCPYRASRKYYITAHL 140
G Y+C C +T RH +T K + C C +RK +TAH+
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 50.2 bits (121), Expect = 8e-09
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRI--HKTEREYACGKC 254
T G+ + C C SN H + + Y C C
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 209 KTHVMT--HTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
H +T K + C +C + N+ H++I
Sbjct: 27 CRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 42.5 bits (101), Expect = 4e-06
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
S K Y CP C FT+K + H+
Sbjct: 33 SHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 30.6 bits (70), Expect = 0.079
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 108 LQRHLLTHTGEKPFACHLC 126
++ T GE + C +C
Sbjct: 1 MEF---TKEGEHTYRCKVC 16
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 58.2 bits (142), Expect = 2e-11
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHL 268
H+ HTG KPF C C ++S +L TH+R H E+ +AC C + A + K H
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Query: 269 K 269
K
Sbjct: 83 K 83
Score = 56.3 bits (137), Expect = 8e-11
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
H+ H G KP++C C F++ L H+ THTGEKPFAC +C
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Score = 51.7 bits (125), Expect = 4e-09
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE 248
TH+ THTG+KPFAC C +S + H +IH +++
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 49.8 bits (120), Expect = 2e-08
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 91 KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+PY CP CD F+Q L RH+ HTG+KPF C +C SR ++T H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 46.3 bits (111), Expect = 3e-07
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
H+ +H G KP+ C C F + +RH H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 39.4 bits (93), Expect = 9e-05
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+P+AC CD +QS +L H+RIH ++ + C C
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRIC 40
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 57.9 bits (141), Expect = 2e-11
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
TH+ THTG+KPFAC C +S + H I K
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKV 64
Score = 52.5 bits (127), Expect = 2e-09
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
KP++C C F++ L H+ THTGEKPFAC +C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
H+ +H G KP+ C C F + +RH P S+ Y++
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENE 77
Score = 43.3 bits (103), Expect = 4e-06
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
KPF C C ++S +L TH+R H E+ +AC C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37
Score = 39.8 bits (94), Expect = 7e-05
Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLL---THTGEK 119
P + ++ L+ + GE+
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 36.7 bits (86), Expect = 0.001
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTH---LRIH 243
K H P + +++ +L+ L+
Sbjct: 48 KRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKL 84
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 3e-11
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C FT K L+ H HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 50.2 bits (121), Expect = 5e-09
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ CS C + S L+ H + H ER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 27.9 bits (63), Expect = 0.45
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C + K + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.6 bits (135), Expect = 4e-11
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
S G KPYKC C F Q L+ H+L HTG P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 49.1 bits (118), Expect = 1e-08
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ G+KP+ C C Q ++L+ H+ IH +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 30.2 bits (69), Expect = 0.068
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GEKP+ C C R + ++ AH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 25.6 bits (57), Expect = 2.9
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFA 222
+ +K + C C +++ HV+ HTG P +
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 6e-11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C FT+K L H +HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 49.0 bits (118), Expect = 1e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ CS C + S L H + H ER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 30.6 bits (70), Expect = 0.043
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C +RK + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 25.5 bits (57), Expect = 2.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 210 THVMTHTGDKPFACS 224
H +HTG++ S
Sbjct: 30 IHQQSHTGERHSGPS 44
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 56.4 bits (137), Expect = 7e-11
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 81 KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
K HL +H G KPY C C F + L RH HTG +PF C C SR ++
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83
Query: 139 H 139
H
Sbjct: 84 H 84
Score = 51.8 bits (125), Expect = 4e-09
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 187 RTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHK 244
RT C + ++K H+ THTG+KP+ C + C + +S L H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 245 TEREYACGKC 254
R + C KC
Sbjct: 62 GHRPFQCQKC 71
Score = 45.6 bits (109), Expect = 6e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
C +T+ L+ HL THTGEKP+ C
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
H HTG +PF C CD ++S +L H++ H
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
H H G +P++C CD F++ L H+ H
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 55.9 bits (136), Expect = 8e-11
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 84 LSSHL--------GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYY 135
+ H KPYKC C F K L H HTGEKP+ C++C + +R
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 136 ITAH 139
+ H
Sbjct: 61 LKTH 64
Score = 52.1 bits (126), Expect = 2e-09
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+ H DKP+ C C + NL +H +H E+ Y C C
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
Score = 48.6 bits (117), Expect = 3e-08
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPF 121
H + H G KPY+C C F + L+ H H+GEKP+
Sbjct: 36 HKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 48.2 bits (116), Expect = 5e-08
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
K + C C + +Y + +H HTG+KP+ C+ C N+ +NL+TH RIH E+
Sbjct: 13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Query: 248 EY 249
Y
Sbjct: 73 PY 74
Score = 28.2 bits (64), Expect = 0.62
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 233 SSNLQTHLRIHKTEREYACGKC 254
+ H + +++ Y C +C
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRC 23
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 1e-10
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KP KC C F K L H TH +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 47.2 bits (113), Expect = 6e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP C+ C S L H R H ++
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 30.6 bits (70), Expect = 0.055
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP C C K + H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 27.9 bits (63), Expect = 0.50
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K C C A + + H TH DK S
Sbjct: 6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 1e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C + +++ L H HTGEK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + +G+KP+ C C + +L H R+H E+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 29.0 bits (66), Expect = 0.17
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKP+ C C R+ + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-10
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS +G K YKC C F+Q LQ H HTGEKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + G+K + C C +QSS+LQTH R+H E+
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.11
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GEK + C +C S+ ++ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 24.8 bits (55), Expect = 5.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 210 THVMTHTGDKPFACS 224
TH HTG+KP S
Sbjct: 30 THQRVHTGEKPSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
S G KP+ C C+ F+ K L H TH EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 45.2 bits (108), Expect = 3e-07
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+G+KPF CS C+ + S L H + H E+
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 31.4 bits (72), Expect = 0.021
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 114 THTGEKPFACHLCPYRASRKYYITAH 139
+GEKPF C C S K Y+ H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 26.7 bits (60), Expect = 1.1
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ +K F C C A Y+ H TH +KP S
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 2e-10
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G P+ C C FT K L H HTGE+P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 49.4 bits (119), Expect = 9e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+ PF CS C +NL H +IH ER
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 29.4 bits (67), Expect = 0.13
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGE PF C C + K + H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 24.8 bits (55), Expect = 5.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T + F+C C + + H HTG++P S
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 55.0 bits (133), Expect = 2e-10
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 82 NHLSSHL--GWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
N+L +++ +PY CP CD F++ L RH+ HTG+KPF C +C SR ++T
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 138 AHL 140
H+
Sbjct: 67 THI 69
Score = 44.6 bits (106), Expect = 1e-06
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 214 THTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
+P+AC CD ++S L H+RIH ++ + C C + L H++
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 43.1 bits (102), Expect = 3e-06
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
H+ HTG KPF C C ++S +L TH+R H
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.8 bits (96), Expect = 2e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
H+ H G KP++C C F++ L H+ THT
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F Q L +H HTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 47.1 bits (113), Expect = 5e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G KP+ C C T Q +L H R+H ER
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +G+KP+ C C + ++ H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 25.6 bits (57), Expect = 3.2
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ + KK + C C ++ H HTG++ S
Sbjct: 6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 2e-10
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
SS G KP++C C FTQ L H HTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G+KPF C C Q+S+L +H R+H E+
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.043
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKPF C C R ++ ++ +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 24.4 bits (54), Expect = 7.5
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ +K F C C ++ +H HTG+KP S
Sbjct: 8 SGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.6 bits (130), Expect = 2e-10
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KP++C C F K L H THTGEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 2e-08
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KPF CS C N SNL H R H E+
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.020
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKPF C C + K + H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 26.7 bits (60), Expect = 1.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K F C C A + H THTG+KP S
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 2e-10
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C F + L H + HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C C +L TH +H E+
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.81
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C + + H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 24.8 bits (55), Expect = 5.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 210 THVMTHTGDKPFACS 224
TH M HTG+KP S
Sbjct: 30 THHMVHTGEKPSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 53.8 bits (130), Expect = 3e-10
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 82 NHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KP+ C P C F++ L RH +H+G KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 48.5 bits (116), Expect = 2e-08
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 210 THVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KPFAC++ C + ++S L H R H +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 30.7 bits (70), Expect = 0.051
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 111 HLLTHTGEKPFACH--LCPYRASRKYYITAHL 140
+ TGEKPFAC C +R SR ++ H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 28.0 bits (63), Expect = 0.37
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 209 KTHVMTHTGDKPFACS 224
H +H+G KP S
Sbjct: 31 SRHRRSHSGVKPSGPS 46
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KP+KC C FTQ L H HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 9e-09
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + +G+KPF C C Q+S L +H R+H E+
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 31.0 bits (71), Expect = 0.035
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKPF C C R ++ + +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KP+KC C F + L RH + HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KPF C C + S L H +H E+
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 28.6 bits (65), Expect = 0.22
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKPF C +C + + H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 26.3 bits (59), Expect = 1.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K F C C + + H M HT +KP S
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G + ++C C F Q +H HTGEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 8e-09
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + G++ CS C Q+SN H RIH E+
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.15
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GE+ C C + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 26.3 bits (59), Expect = 1.7
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ ++ C C A H HTG+KP S
Sbjct: 6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
SS G KPYKC C + K L H HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 52.5 bits (127), Expect = 7e-10
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ C C N NL H ++H ER
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 27.9 bits (63), Expect = 0.39
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C + K+ + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 20/41 (48%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY C C F QK L RH HTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C + Q S+L H RIH E+
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C +K ++ H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 24.8 bits (55), Expect = 6.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K ++C C + ++ H HTG+KP S
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 54.8 bits (133), Expect = 3e-10
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 8/54 (14%)
Query: 81 KNHLSSH--------LGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
K L H + C C FT++ + RH G
Sbjct: 28 KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 52.1 bits (126), Expect = 2e-09
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE----KPFACHLCPYRASRKYYITA 138
+H G KPY C HCD F QK +L H + F C C +R+ +
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 139 H 139
H
Sbjct: 66 H 66
Score = 49.8 bits (120), Expect = 1e-08
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE----YACGKC 254
+ THTG+KP+ACS+CD T Q L H + + + C KC
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC 53
Score = 46.0 bits (110), Expect = 4e-07
Identities = 7/48 (14%), Positives = 11/48 (22%), Gaps = 4/48 (8%)
Query: 211 HVMTHTG----DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
H + F CS C T + + + H
Sbjct: 34 HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 35.6 bits (83), Expect = 0.002
Identities = 18/119 (15%), Positives = 23/119 (19%), Gaps = 40/119 (33%)
Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEP 167
THTGEKP+AC C +K + H +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH--------------------FKRYHDP- 41
Query: 168 ISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC 226
FVC C + H G
Sbjct: 42 -------------------NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 25.6 bits (57), Expect = 7.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 235 NLQTHLRIHKTEREYACGKC 254
+ + R H E+ YAC C
Sbjct: 2 SSGSSGRTHTGEKPYACSHC 21
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 53.3 bits (129), Expect = 3e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KP+KC C F+++ L H HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KPF C C ++ S L H ++H E+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.14
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKPF C C SR+ + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 24.8 bits (55), Expect = 6.4
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K F C C + H HTG+KP S
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.3 bits (129), Expect = 3e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS K ++C C FT K L +H HTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + + K C C S+L H RIH E+
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.21
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ + K CH C
Sbjct: 2 SSGSSGSSTKSHQCHEC 18
Score = 24.8 bits (55), Expect = 5.3
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ + K C C ++ H HTG+KP S
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 3e-10
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C FT + L H HTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C SNL TH +IH E+
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.51
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ TGEKP+ C C
Sbjct: 2 SSGSSGTGEKPYRCAEC 18
Score = 24.4 bits (54), Expect = 9.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 210 THVMTHTGDKPFACS 224
TH HTG+KP S
Sbjct: 30 THQKIHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY C C F+QK +L H THTGEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G+KP+ C+ C T +Q S L H R H E+
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.030
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKP+ C+ C S+K ++AH
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 25.6 bits (57), Expect = 3.2
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ + +K + C C + H THTG+KP S
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS KPYKC C + +++ L H H GEK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 49.0 bits (118), Expect = 1e-08
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + + +KP+ C C N+ NL H R+H E+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 28.6 bits (65), Expect = 0.21
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ + EKP+ C C +R+ + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY C C F+ K L H+ TH+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + G+KP+ CS C + S L H+R H E+
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GEKP+ C C S K Y+ H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 27.1 bits (61), Expect = 0.96
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ +K + C C A Y+ H+ TH+G+KP S
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 54.4 bits (132), Expect = 4e-10
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
G C C F L RH L+H+GEKP++C +C R RK ++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE--YACGKC 254
H ++H+G+KP++C C + + H+R H Y C C
Sbjct: 25 RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 71
Score = 49.8 bits (120), Expect = 2e-08
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE--KPFACHLC 126
H SH G KPY CP C F +K + H+ +H G KP+ C C
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 71
Score = 49.0 bits (118), Expect = 4e-08
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+G AC C +L H H E+ Y+C C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVC 41
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 83 HLSSHL------GWKPYKCPHCDHCFTQKVVLQRHL-LTHTGEK 119
+S H+ KPY C C F++ L H+ H+G
Sbjct: 50 RMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 56.1 bits (136), Expect = 4e-10
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 160 KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQY-----ACYIKTHVMT 214
+ CS+ S +++ H + ++K+FVC + + + H+
Sbjct: 5 RWDGCSQEFDS-QEQLVHH--INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 215 HTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC--GKCAYRTAALPDLKLHLKN 270
HTG+KP C++ C + ++ NL+THLR H E+ Y C C+ + D H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 271 MH 272
H
Sbjct: 122 TH 123
Score = 49.9 bits (120), Expect = 6e-08
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACH 124
H+ H G KP+KC C +++ L+ HL +HTGEKP+ C
Sbjct: 56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Score = 47.6 bits (114), Expect = 4e-07
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLL-THTGEKPFAC 123
K HL SH G KPY C H C F+ +H TH+ EKP+ C
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Score = 46.8 bits (112), Expect = 8e-07
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLT---HTGEKPFACHLCPYRASRK 133
+ C F + L H+ + H K F CH +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELR 47
Score = 45.7 bits (109), Expect = 2e-06
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTH-LRIHKTEREYAC 251
KTH+ +HTG+KP+ C + C + +S+ H R H E+ Y C
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Score = 45.3 bits (108), Expect = 3e-06
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 87 HLGWKPYKCPHCDH-----CFTQKVVLQRHLLTHTGEKPFACHLC 126
H K + C F + +L H+ HTGEKP C
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE 73
Score = 40.7 bits (96), Expect = 1e-04
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 209 KTHVM-THTGDKPFACSY--CDYTCNQSSNLQTHLRIH 243
H TH+ +KP+ C C S+L+ H++
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 35.3 bits (82), Expect = 0.007
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 219 KPFACSYCDYTCNQSSNLQTHL---RIHKTEREYACGKC 254
C + L H+ IH +E+ C
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG 40
Score = 34.9 bits (81), Expect = 0.011
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 87 HLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTG 117
H KPY C P C +T L++H+ T G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C FTQK L +H THTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C C Q ++L H + H E+
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.027
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C +C ++K ++ H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 25.2 bits (56), Expect = 3.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K + C C A ++ H THTG+KP S
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G +P+KC C F ++ L HL H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 47.1 bits (113), Expect = 5e-08
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G++PF C+ C + S+L HLR+H E+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 30.6 bits (70), Expect = 0.047
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GE+PF C+ C R+ ++ H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.9 bits (128), Expect = 4e-10
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F K L H THTGE +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+ + TG+KP+ C+ C N SNL H R H E + G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 29.8 bits (68), Expect = 0.099
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C + K + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 52.9 bits (128), Expect = 4e-10
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
S G KPY C C F L+ HL HTG P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 50.6 bits (122), Expect = 3e-09
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ G+KP+ C C L++HLRIH +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 30.9 bits (71), Expect = 0.029
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAHL 140
+ GEKP+ C +C R + +HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 29.0 bits (66), Expect = 0.18
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFA 222
+ + +K + C C ++ +K+H+ HTG P +
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G +PY C C FT + L +H HTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG++P+ C+ C SNL H +IH E+
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.096
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ TGE+P+ C +C
Sbjct: 2 SSGSSGTGERPYICTVC 18
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.0 bits (128), Expect = 5e-10
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KP++C C F+ L +HL +H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 47.2 bits (113), Expect = 7e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+ + TG+KPF C C + S +L HLR H+
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 29.5 bits (67), Expect = 0.11
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K F C C ++C + H+ +H P S
Sbjct: 6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 29.5 bits (67), Expect = 0.13
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 111 HLLTHTGEKPFACHLC 126
+ TGEKPF C C
Sbjct: 3 SGSSGTGEKPFQCKEC 18
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C F + L H TH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ C+ C S+L H H E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.16
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C + + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 53.4 bits (129), Expect = 5e-10
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL-LTHTGEKPFACHLC 126
+ SS KPY C C F++ L H+ HT E+P C +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 46.4 bits (111), Expect = 1e-07
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHL-RIHKTEREYACGKC 254
+ + + KP+ C C ++ +L H+ ++H +ER + C
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 27.5 bits (62), Expect = 0.73
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 81 KNHLSSHL-----GWKPYKCPHCDHCFTQ 104
+HL+ H+ +P+KC +
Sbjct: 25 PDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C FTQ L H HTGEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 2e-08
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G+KP+ C+ C Q+S+L H RIH E+
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.069
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKP+ C+ C ++ ++T H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY C C FT + L +H HT +KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C SNL H +IH ++
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 27.9 bits (63), Expect = 0.51
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 111 HLLTHTGEKPFACHLC 126
+ TGEKP+ C C
Sbjct: 3 SGSSGTGEKPYICAEC 18
Score = 24.4 bits (54), Expect = 6.7
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
T +K ++C C A + H HT KP S
Sbjct: 8 TGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 6e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G K Y C C F++ L +H H+GEKP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 7e-08
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+K + C C + +++ L H R+H E+
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.024
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEK + C C SR + H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 24.4 bits (54), Expect = 7.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K + C C + A + H H+G+KP S
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 6e-10
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G K ++C C FT+K L H HTGEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG K F C+ C + S L H +IH E+
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.074
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TG K F C C +RK ++ H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 52.5 bits (127), Expect = 7e-10
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KP++C HC F K L H HTGEK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG KPF C++C + NL TH RIH E+
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 29.4 bits (67), Expect = 0.11
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TG+KPF C C K + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 25.2 bits (56), Expect = 3.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K F C C + + + TH HTG+K S
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 7e-10
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
SS G KP+KC C F Q + L HL HTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 4e-08
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G+KPF C C Q+ +L +HLRIH E+
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.057
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKPF C C + ++ +H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 7e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G +PY+C C F K L H +HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG +P+ C C S+L H R H E+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.089
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TG++P+ C C K + H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 24.4 bits (54), Expect = 8.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 210 THVMTHTGDKPFACS 224
H +HTG+KP S
Sbjct: 30 CHRRSHTGEKPSGPS 44
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ + C C F ++ L+RH +HT EKP+ C LC +R+ + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 43.2 bits (103), Expect = 2e-06
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLL-THTGEK 119
K H SH KPY C C+ FT++ +L RH H+G
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL-RIH 243
K H +HT +KP+ C C+ + L H +IH
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 40.9 bits (97), Expect = 1e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+ F C C + +L+ H R H E+ Y CG C
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-10
Identities = 19/43 (44%), Positives = 20/43 (46%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
+ SS G KPYKC C F L RH HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C +S L H RIH E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.082
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C Y++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 25.2 bits (56), Expect = 4.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
T +K + C C ++ Y+ H HTG+KP S
Sbjct: 8 TGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-10
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G K +KC C FTQ L H HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 9e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + G K F C+ C T QSS+L H RIH E+
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.18
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ G+K F C+ C ++ +T H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 8e-10
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C FT+K L H HTGEKP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ CS C + + S L H +IH E+
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.095
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C +C ++K + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 9e-10
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G + Y+C C F QK L H H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG++ + CS C Q S L H RIH+ E+
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.21
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGE+ + C C +K ++ H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 9e-10
Identities = 21/42 (50%), Positives = 22/42 (52%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C FTQ L RH HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C Q+S+L H IH E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 30.1 bits (69), Expect = 0.071
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ TGEKP+ C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G PY+C C F++K L H TH+G+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+ + TG+ P+ C C ++ L +H + H + + G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 29.0 bits (66), Expect = 0.15
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGE P+ C C SRK + +H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-09
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KP+KC C + Q+V L +H HTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KPF C C + NQ +L H R+H E+
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.020
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKPF C C +++ ++T H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 52.1 bits (126), Expect = 1e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY C C F+ K L H +HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG KP+ CS C T + S L H R H +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 31.7 bits (73), Expect = 0.016
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TG KP+ C C S K + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 25.6 bits (57), Expect = 3.3
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T K + C C + H +HTG KP S
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-09
Identities = 19/42 (45%), Positives = 19/42 (45%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
SS G KPYKC C FTQ L H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C Q+S+L H RIH +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 30.2 bits (69), Expect = 0.063
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C ++ ++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-09
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F +K L H HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ CS C + + S L H RIH E
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 28.7 bits (65), Expect = 0.25
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C +K + H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-09
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C F+Q L RH HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C +Q+S L H RIH E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.11
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C S+ + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 1e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KP+KC C F H +H+GEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 8e-08
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G+KPF C C +S +H R H E+
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.26
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKPF C C +H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 25.6 bits (57), Expect = 2.8
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ + +K F C C +H +H+G+KP S
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 51.8 bits (125), Expect = 1e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY+C C F K +L H TH G +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+ + +G+KP+ C+ C S L H R H + G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 30.2 bits (69), Expect = 0.055
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKP+ C+ C K + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 51.7 bits (125), Expect = 1e-09
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY C C F K L H THTGE +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 48.6 bits (117), Expect = 2e-08
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+ + TG KP+ C+ C S L H R H E + G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 31.3 bits (72), Expect = 0.026
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TG KP+ C+ C K Y+ H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 25.1 bits (56), Expect = 3.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFAC 223
+ T K +VC C A + Y+ H THTG+ +
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 51.9 bits (125), Expect = 1e-09
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
S G PY C C FTQ+ L H + + P +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 41.5 bits (98), Expect = 6e-06
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ G+ P+ C C + Q +L H R +
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 26.1 bits (58), Expect = 1.6
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 114 THTGEKPFACHLC 126
+ GE P+ C C
Sbjct: 5 SSGGETPYLCGQC 17
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY+C C F QK L +H HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C C Q +NL H RIH E+
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.058
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C ++K +T H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C F L H + HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ C+ C SNL TH IH E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 27.5 bits (62), Expect = 0.59
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 111 HLLTHTGEKPFACHLC 126
+ TGEKP+ C+ C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G +P+KC C F Q L +H HTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG++P C+ C + QS++L H RIH E+
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.049
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGE+P C+ C + ++ H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 1e-09
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F+ L +H +THT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.2 bits (113), Expect = 6e-08
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + G+KP+ CS C + + S L H H E+
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 29.8 bits (68), Expect = 0.092
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GEKP+ C C S Y +T H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-09
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F+ + L H H+G+KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ TG+KP+ CS C + +L H RIH ++
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 28.6 bits (65), Expect = 0.22
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C +C S + ++ H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY C C F+ L H + HTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG KP+ C+ C + S+L TH IH E+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.20
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TG KP+ C+ C S +T H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 20/41 (48%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C FTQ L RH HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 47.1 bits (113), Expect = 7e-08
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C Q+S+L H R+H +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 27.9 bits (63), Expect = 0.39
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C ++ ++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 53.2 bits (129), Expect = 2e-09
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
H+S HLG +PY C C F K L H+ HTG KP+ C++C
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 51.3 bits (124), Expect = 8e-09
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
H+ H G +P+ C C +L H++IH + Y C C
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 50.5 bits (122), Expect = 1e-08
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
S G K Y C C FT K RH+ H G +P+ C +C + K+++ H
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Score = 47.1 bits (113), Expect = 3e-07
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
H+ H G KPY+C C F + RH + K +
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKA 97
Score = 46.7 bits (112), Expect = 4e-07
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+GDK + C C + S H+ +H R Y CG C
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVC 43
Score = 43.2 bits (103), Expect = 6e-06
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
H+ HTG KP+ C+ C + H + + Y K
Sbjct: 55 GHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Score = 30.1 bits (69), Expect = 0.21
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQT 238
H + K + + + ++S +
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 27.8 bits (63), Expect = 1.6
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 87 HLGWKPYKCPHCDHCFTQK 105
K Y+ + T+
Sbjct: 86 TSCTKSYEAAKAEQNTTEA 104
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 2e-09
Identities = 21/41 (51%), Positives = 21/41 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C FTQ L RH HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 5e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C+ C Q+S+L H IH E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.38
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C ++ ++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 51.4 bits (124), Expect = 2e-09
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
S G KPY+C C F+QK L H+ HTG P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 46.4 bits (111), Expect = 1e-07
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ G+KP+ C C +Q +L H+R+H +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GEKP+ C C S+K + H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 52.2 bits (126), Expect = 2e-09
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL 266
K H +HT P+ C + CD + S L+ H ++H C++
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 79
Query: 267 HLKNMH 272
H+ H
Sbjct: 80 HVAECH 85
Score = 50.3 bits (121), Expect = 1e-08
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
K H SH PY+CPH CD F+ L+RH H G C +
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 79
Query: 139 H 139
H
Sbjct: 80 H 80
Score = 36.8 bits (86), Expect = 6e-04
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 93 YKCPH--CDHCFTQKVVLQRHLLTHTGEKPFAC 123
Y C C F + L+ H +HT + P+ C
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 34
Score = 28.4 bits (64), Expect = 0.77
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 221 FACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
+ C + C + + L+ H H + Y C
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 34
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 52.2 bits (126), Expect = 2e-09
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 86 SHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
H+ K + CP C F K L+ H+ H+ + + C
Sbjct: 32 QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 49.9 bits (120), Expect = 1e-08
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 213 MTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKC 254
H K F+C C + N +L+ H+++H R+Y C
Sbjct: 31 YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 45.6 bits (109), Expect = 4e-07
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 87 HLGWKPYKCPH--CDHCFTQKVVLQRHL-LTHTGEKPFAC 123
G C C F+ + L H H +K F+C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSC 41
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 215 HTGDKPFACSY--CDYTCNQSSNLQTHLRIHKT-ER-----EYACGKC 254
+G C + C + L H + ++ E ACGK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKS 49
Score = 32.5 bits (75), Expect = 0.021
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 47/116 (40%)
Query: 115 HTGEKPFACHL--CPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDM 172
+G C C S + Y+ H +K H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHH-------------------KKYQH--------- 33
Query: 173 SEIIEHCLVCPNATRTDKKKFVC--FACPYATQYACYIKTHVMTHTGDKPFACSYC 226
+K F C AC + + ++K H+ H+ + + C +
Sbjct: 34 ---------------IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 26.7 bits (60), Expect = 2.5
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCF 102
K H+ H + Y C
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G +PY C C F + L HL H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ +G++P+ C+ C + S+L HL+ H E+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 28.6 bits (65), Expect = 0.22
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GE+P+ C+ C R ++ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 25.2 bits (56), Expect = 4.3
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 211 HVMTHTGDKPFACS 224
H+ H +K S
Sbjct: 31 HLKRHFREKSSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KP+ C C F+ + L +H HTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 9e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KPF C C + L H RIH E+
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.26
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKPF C C S + H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 18/41 (43%), Positives = 18/41 (43%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY C C F LQ H HTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C C S LQ H RIH E+
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.13
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ TGEKP+ C C
Sbjct: 2 SSGSSGTGEKPYNCEEC 18
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 21/41 (51%), Positives = 21/41 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C FTQ L RH HTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG KP+ C+ C Q+S+L H IH E+
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.74
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 111 HLLTHTGEKPFACHLC 126
+ TG+KP+ C+ C
Sbjct: 3 SGSSGTGKKPYKCNEC 18
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 52.8 bits (128), Expect = 2e-09
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
K + C C FT+ L H THT E+P+ C +C
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51
Score = 52.8 bits (128), Expect = 3e-09
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+ K F C +C +S NL H R H ER Y C C
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51
Score = 52.1 bits (126), Expect = 4e-09
Identities = 25/144 (17%), Positives = 40/144 (27%), Gaps = 44/144 (30%)
Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEP 167
L +K F C C ++ Y + H + H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH--------------------ERTH---- 40
Query: 168 ISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCD 227
TD++ + C C A + +++ H H+ +KPF C C
Sbjct: 41 --------------------TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Query: 228 YTCNQSSNLQTHLRIHKTEREYAC 251
QS L H +H
Sbjct: 81 KGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 50.9 bits (123), Expect = 1e-08
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
H +PY C C F ++ L+ H H+ EKPF C C
Sbjct: 40 HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Score = 50.5 bits (122), Expect = 1e-08
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
KK+F+C C + + H THT ++P+ C C + +L+ H IH E+
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 248 EYACGKC 254
+ C +C
Sbjct: 73 PFKCQEC 79
Score = 49.4 bits (119), Expect = 4e-08
Identities = 12/41 (29%), Positives = 13/41 (31%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
H H KP+KC C F Q L H H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 31.6 bits (73), Expect = 0.063
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 233 SSNLQTHLRIHKTEREYACGKC 254
SS KT++E+ C C
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFC 23
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 18/41 (43%), Positives = 18/41 (43%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C F L H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C C + S+L H RIH E+
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.30
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C +C +T H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G PY+C C F++K L H TH GEKP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+ P+ C C ++ L +H R H E+
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGE P+ CH C SRKY + +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 24.4 bits (54), Expect = 9.0
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T + + C C A + +H TH G+KP S
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 3e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F+ + L H HTG+KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ C+ C + S+L TH IH ++
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.29
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C+ C S + +T H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 52.9 bits (128), Expect = 3e-09
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 83 HLSSHL---GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
+ HL G + + C C F + L+RH L HTGEKPF C
Sbjct: 22 AMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Score = 51.4 bits (124), Expect = 1e-08
Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 51/165 (30%)
Query: 91 KPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALL 148
+ CPH C F +++HL TH G + +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPR-------VH-------------------- 35
Query: 149 LQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFA--CPYATQYAC 206
C C + + S++ H L T +K F C C
Sbjct: 36 -----------VCAECGKAFV-ESSKLKRHQL-----VHTGEKPFQCTFEGCGKRFSLDF 78
Query: 207 YIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREY 249
++THV HTGD+P+ C + C+ QS+NL++H+ H +
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 49.4 bits (119), Expect = 5e-08
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTERE 248
+ VC C A + +K H + HTG+KPF C++ C + NL+TH+RIH +R
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 249 YAC 251
Y C
Sbjct: 93 YVC 95
Score = 47.5 bits (114), Expect = 2e-07
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFAC 123
K H H G KP++C C F+ L+ H+ HTG++P+ C
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Score = 46.4 bits (111), Expect = 7e-07
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPF 121
+ H+ H G +PY CP C+ F Q L+ H+LTH K
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 45.6 bits (109), Expect = 1e-06
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ H+ TH G + C+ C +SS L+ H +H E+ + C
Sbjct: 24 RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Score = 35.2 bits (82), Expect = 0.006
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+ AC + C +S ++ HL H R + C +C
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAEC 40
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 3e-09
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F+Q L RH HTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 9e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG KP+ C+ C +Q+S L H R+H E+
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.52
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TG KP+ C+ C S+ + H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 3e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F+ L +H H+GEKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 46.3 bits (111), Expect = 1e-07
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ C C + ++L H R+H E+
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 28.2 bits (64), Expect = 0.34
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 111 HLLTHTGEKPFACHLC 126
+ TGEKP+ C +C
Sbjct: 3 SGSSGTGEKPYECDVC 18
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPY C C F L +HL HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ TG+KP++C+ C S++L HLR+H E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 29.4 bits (67), Expect = 0.14
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP++C++C ++ H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 25.2 bits (56), Expect = 4.1
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
T +K + C C A + ++ H+ HT + S
Sbjct: 8 TGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
SS G KPYKC C F + L RH L HTGEKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 4e-08
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ C C ++S+L H IH E+
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 30.5 bits (70), Expect = 0.049
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ CH C R ++ H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY+C C F+Q L +H HTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 1e-07
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C C +Q+++L H R+H E+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.098
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C S+ ++ H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 50.9 bits (121), Expect = 4e-09
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 64 QFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
+++C C +K H+ +H +PY C +C+ F K L +H+ + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 50.1 bits (119), Expect = 7e-09
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 192 KFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
K++C C + +K H+ THT +P+ C+YC+++ NL H++ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 43.2 bits (101), Expect = 2e-06
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS 142
Y C C + +L++H+ THT +P+ C C + K +T H+ S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 39.7 bits (92), Expect = 3e-05
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 223 CSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
C C + S L+ H+R H R Y C C + +L H+K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 27.4 bits (60), Expect = 0.88
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDK 219
T TD + + C C ++ + + H+ + K
Sbjct: 23 THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 50.3 bits (121), Expect = 4e-09
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY C C F L +H H+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 48.0 bits (115), Expect = 3e-08
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KP+ C C + +S L H R+H E+
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 29.5 bits (67), Expect = 0.11
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ TGEKP+ C C
Sbjct: 2 SSGSSGTGEKPYNCKEC 18
Score = 25.6 bits (57), Expect = 3.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
T +K + C C + ++A + H H+G+KP S
Sbjct: 8 TGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C F + L H HTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 48.6 bits (117), Expect = 2e-08
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + +G+KP+ CS C ++ ++L H RIH R
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 29.8 bits (68), Expect = 0.086
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ +GEKP+ C C R ++ H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KP++C C F+ L H HTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG+KPF C+ C + + SS L TH RIH E+
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.056
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKPF C C S + H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 24.4 bits (54), Expect = 8.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ T +K F C C + + + TH HTG+KP S
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
SS G K YKC C F++ L +H HTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 6e-08
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+K + C+ C +++S L H +IH E+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.025
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEK + C+ C SR ++ H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G + Y+C C F +K L H HTGEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 7e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + TG++ + CS C + S L H RIH E+
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.036
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGE+ + C C +RK + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 50.9 bits (123), Expect = 5e-09
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
+ + C C + + SS+L H R H E+ Y C +C
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 49.7 bits (120), Expect = 1e-08
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
+ YKC C F+ L +H THTGEKP+ C C
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 46.7 bits (112), Expect = 2e-07
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPF 121
H G KPYKC C F Q+ L H HTG P
Sbjct: 41 HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 43.2 bits (103), Expect = 3e-06
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY 249
H THTG+KP+ C C Q S+L H R+H
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 31.6 bits (73), Expect = 0.038
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 232 QSSNLQTHLRIHKTEREYACGKC 254
S + + R Y C +C
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDEC 24
Score = 31.3 bits (72), Expect = 0.056
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 104 QKVVLQRHLLTHTGEKPFACHLC 126
R + + C C
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDEC 24
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 6e-09
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPY C +C F L RH HTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + +G+KP+ C YC S+ L H RIH E+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.12
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ +GEKP+ C C
Sbjct: 2 SSGSSGSGEKPYVCDYC 18
Score = 24.8 bits (55), Expect = 5.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
+ +K +VC C A + + H HTG+KP S
Sbjct: 8 SGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.9 bits (120), Expect = 6e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ SS G KPYKC C F +H HTG++P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP+ C C +S+ H R+H +R
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 28.3 bits (64), Expect = 0.36
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP+ C C T H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 49.0 bits (118), Expect = 1e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
S G PY+C C F +K L H TH GE +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 47.9 bits (115), Expect = 3e-08
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+G+ P+ CS C N+ L +H R H E + G
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 29.4 bits (67), Expect = 0.100
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 114 THTGEKPFACHLCPYRASRKYYITAH 139
+GE P+ C C +RK + +H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISH 29
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 50.1 bits (121), Expect = 1e-08
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
HL H +PY C +C F QK +++H HTGEKP C +C
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Score = 50.1 bits (121), Expect = 1e-08
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
TH++ H+ +P+ C YC +Q S+++ H IH E+ + C C
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Score = 44.7 bits (107), Expect = 1e-06
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+D + + C C +K H HTG+KP C C +QSSNL TH R H
Sbjct: 25 SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 42.8 bits (102), Expect = 5e-06
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ C C F + L HLL H+ +P+ C C R +K + H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 37.0 bits (87), Expect = 6e-04
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
H G KP+KC C F+Q L H HTG
Sbjct: 52 HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 34.7 bits (81), Expect = 0.003
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
F C C + +SS L THL IH R Y C C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC 35
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 49.8 bits (120), Expect = 1e-08
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
H G KPY C C F++ +L +H HTGEKP+ C C S+ + H
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 48.6 bits (117), Expect = 3e-08
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
H H G KPYKC C F+Q L H HT
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 48.6 bits (117), Expect = 4e-08
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
H+G+KP+ C C ++SS L H R+H E+ Y C +C
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 45.5 bits (109), Expect = 5e-07
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+ +K + C C A + + H HTG+KP+ C C +Q+S L H RIH +
Sbjct: 10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Query: 248 EYA 250
Sbjct: 70 SSG 72
Score = 31.3 bits (72), Expect = 0.053
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
H+GEKP+ C C SR + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 49.1 bits (118), Expect = 1e-08
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL-LTHTGEKPFAC 123
+ SS G KPY+C C F Q L RH HTGEKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYAC 251
+ + TG KP+ C C Q+++L H R H E+
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 28.3 bits (64), Expect = 0.31
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 111 HLLTHTGEKPFACHLC 126
+ TG+KP+ C C
Sbjct: 3 SGSSGTGKKPYECIEC 18
Score = 24.8 bits (55), Expect = 6.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 186 TRTDKKKFVCFACPYA-TQYACYIKTHVMTHTGDKPFACS 224
+ T KK + C C A Q I+ HTG+KP S
Sbjct: 6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 1e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KPYKC C F L +H H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ TG+KP+ C C SS+L H +H ER
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 110 RHLLTHTGEKPFACHLC 126
+ TGEKP+ C +C
Sbjct: 2 SSGSSGTGEKPYKCQVC 18
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G KP++C C F+ L H HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
+ + TG+KP C C + + +S L H RIH E
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 29.8 bits (68), Expect = 0.091
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ TGEKP C C S + H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 48.7 bits (116), Expect = 2e-08
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
+ SS G P+KC CD FTQ+ L +H TH +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 43.7 bits (103), Expect = 1e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+ + G+ PF CS CD Q + L H R H + + G
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 32.5 bits (74), Expect = 0.010
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ GE PF C C +++ Y+ H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 51.4 bits (124), Expect = 3e-08
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 81 KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ HL H G KP+ C C+ FT L RH LTHTGEK F C
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Score = 51.4 bits (124), Expect = 3e-08
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 82 NHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
+ + +K Y C C + + LQ HL HTGEKPF C
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK 46
Score = 48.4 bits (116), Expect = 4e-07
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 209 KTHVMTHTGDKPFACS--YCDYTCNQSSNLQTHLRIH---KTEREYACGKC 254
K H +HT P+ C CD + S L+ H ++H +++ +C
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV 173
Score = 46.4 bits (111), Expect = 2e-06
Identities = 27/171 (15%), Positives = 42/171 (24%), Gaps = 53/171 (30%)
Query: 83 HLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEK--PFACHL--CPYRASRKYYI 136
H +H G K + C CD FT K +++H K + CH C + +
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 137 TAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVC- 195
H + H T + + C
Sbjct: 123 KVH--------------------QFSH------------------------TQQLPYECP 138
Query: 196 -FACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH-LRIHK 244
C +K H H G C + + H H+
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 46.0 bits (110), Expect = 2e-06
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 211 HVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTER-----EYACGKC 254
K + CS+ C N++ LQ HL H E+ E C K
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKG 53
Score = 45.7 bits (109), Expect = 3e-06
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
+ H+ HTG+KPF C C+ +L H H E+ + C
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Score = 44.5 bits (106), Expect = 8e-06
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 81 KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
K H SH PY+CPH CD F+ L+RH H G C
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Score = 42.2 bits (100), Expect = 4e-05
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 81 KNHLSSHLGWK--PYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
K H + K Y C +C F + L+ H +HT + P+ C
Sbjct: 91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Score = 39.9 bits (94), Expect = 3e-04
Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 44/160 (27%)
Query: 111 HLLTHTGEKPFACHL--CPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVH----- 163
K + C C ++ + + AH C H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH--------------------LCKHTGEKP 42
Query: 164 --CSEPIS----SDMSEIIEHCLVCPNATRTDKKKFVC--FACPYATQYACYIKTHVMTH 215
C E + + + H L T T +K F C C +K H
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSL-----THTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Query: 216 TGDK--PFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
K + C + C + + L+ H H + Y C
Sbjct: 98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Score = 30.3 bits (69), Expect = 0.48
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLL-THT 116
K H H G+ K C + +H+ H
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 48.0 bits (115), Expect = 3e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
S G + Y+C C F QK L H HTG P +
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 42.6 bits (101), Expect = 2e-06
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+G + + C C + Q +L H RIH +
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 26.8 bits (60), Expect = 0.99
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 114 THTGEKPFACHLCPYRASRKYYITAH 139
+G++ + C C +K +T H
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLH 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.6 bits (113), Expect = 5e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
SS K C C F L RH L+H+GEKP++
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.0 bits (88), Expect = 1e-04
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCA 255
+ K AC C +L H H E+ Y+ G +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 36.1 bits (83), Expect = 6e-04
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC 226
+ +K+ C C + ++ H ++H+G+KP++
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 47.4 bits (113), Expect = 1e-07
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 76 ARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRAS 131
+ + C H C + + L+ H THTGEKPF+C C R +
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Query: 132 RKYYITAHL 140
R ++ H
Sbjct: 61 RSDELSRHR 69
Score = 45.5 bits (108), Expect = 5e-07
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 182 CPNATRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQ 237
P + + +C C + ++K H THTG+KPF+CS+ C+ +S L
Sbjct: 7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 238 THLRIH 243
H R H
Sbjct: 67 RHRRTH 72
Score = 39.3 bits (92), Expect = 8e-05
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
+ + + CS+ C T +SS+L+ H R H E+ ++C
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50
Score = 33.1 bits (76), Expect = 0.012
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 64 QFLCLF--CSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTH 115
+C C +K H +H G KP+ C C+ F + L RH TH
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS G K + C C F L+ H H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 43.0 bits (102), Expect = 2e-06
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
+ +G+K C C S L+ H R+H E+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 27.2 bits (61), Expect = 0.92
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 111 HLLTHTGEKPFACHLC 126
+ +GEK C C
Sbjct: 3 SGSSGSGEKSHTCDEC 18
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
SS K Y C C FT+ L RH HT + +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+ T K + C+ C + +L H +IH + + G
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 30.6 bits (70), Expect = 0.042
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
+ T K + C+ C +R +++T H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 45.4 bits (108), Expect = 3e-07
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
+G+KP++C+ C T + ++ L H ++H + + G
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 43.1 bits (102), Expect = 2e-06
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
S G KPY C C F+ L +H HT + +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.4 bits (69), Expect = 0.050
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 114 THTGEKPFACHLCPYRASRKYYITAH 139
+GEKP++C C S + H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQH 29
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 43.4 bits (102), Expect = 5e-06
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 64 QFLCLFCSYVATARIAIKNHLSS-HLGWKPYK--------CPHCDHCFTQKVVLQRHLLT 114
C + + H++ H+G CP F K L H+
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 115 HTGEKPFAC 123
HTGEK
Sbjct: 85 HTGEKSGPS 93
Score = 34.9 bits (80), Expect = 0.004
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 9/63 (14%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLL-THTGEKPFACHLCPYRA--------SRKYYIT 137
CD F+ L H+ H G H+C + KY +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 138 AHL 140
H+
Sbjct: 80 NHI 82
Score = 30.7 bits (69), Expect = 0.11
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 170 SDMSEIIEHCLVCPNATRTDKKKFVCFAC----------PYATQYACYIKTHVMTHTGDK 219
S M E++ H + C + +Y + H+ HTG+K
Sbjct: 36 STMHELVTHV----TMEHVGGPEQNNHVCYWEECPREGKSFKAKYK--LVNHIRVHTGEK 89
Query: 220 PFACS 224
S
Sbjct: 90 SGPSS 94
Score = 30.3 bits (68), Expect = 0.20
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHV-MTHTGDKPFACSYCDY--------TCNQSSNLQT 238
+ +C + THV M H G C + + L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 239 HLRIHKTEREYAC 251
H+R+H E+
Sbjct: 81 HIRVHTGEKSGPS 93
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 39.2 bits (92), Expect = 3e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
TG KPF C CD + ++S +L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.4 bits (82), Expect = 8e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
G KP++CP CD F++ L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 34.2 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAHL 140
TG KPF C C SR ++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 40.1 bits (93), Expect = 1e-04
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRI--HKTEREYACGKCAYRTAALPDLK 265
K + TG F C C + L H+ H + + + + P +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 266 LHLKNM 271
L+
Sbjct: 67 SLLEME 72
Score = 38.6 bits (89), Expect = 3e-04
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Query: 160 KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDK 219
+C CS + + E+ H + + + ++ + K
Sbjct: 21 RCKDCSAAYDT-LVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 220 PFACSYCDYTCNQSSNLQTHLRIHK 244
C YC ++ +L H+ K
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.9 bits (82), Expect = 0.003
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 188 TDKKKFVCFACPYATQYACYIKTHVM-----THTGDKPFACSYCDYTCNQSSNLQTHLRI 242
T KF C C A + H+ + + ++ + +L
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 243 HKTEREYACGKCAYRTAALPDLKLHLKNMHLY 274
++ C C + +L DL +H+ Y
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Score = 35.5 bits (81), Expect = 0.004
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
K + S G ++C C + V L H + TG H
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVH-MNETGHYRDDNHET 52
Score = 34.7 bits (79), Expect = 0.007
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 11/104 (10%)
Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEP 167
+ + TG F C C +T H+N H+ R
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET------GHY-----RDDNHETDNN 55
Query: 168 ISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTH 211
S+ + L+ +K C C ++ + + H
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 32.8 bits (74), Expect = 0.035
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 231 NQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
+ S+ + + I ++ C C+ L +L +H+
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 32.4 bits (73), Expect = 0.043
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 65 FLCLFCSYVATARIAIKNHL-----SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
F C CS + + H+ + +K L +K
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 120 PFACHLCPYRASRKYYITAHL 140
C C + ++ H+
Sbjct: 80 VLKCMYCGHSFESLQDLSVHM 100
Score = 30.9 bits (69), Expect = 0.15
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLL--THTGEKPF 121
+ + ++ K KC +C H F L H++ H +
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 36.9 bits (86), Expect = 2e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
+ + C C F ++ L+RH +HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.4 bits (64), Expect = 0.18
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+ F C C + +L+ H R H E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.1 bits (90), Expect = 2e-04
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLN 141
L + + CP C F+ V L++H+ E C +C + H+
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC 121
Query: 142 S 142
Sbjct: 122 K 122
Score = 37.6 bits (86), Expect = 9e-04
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT 245
R K + P + Y+ + F C C + S +L+ H+R
Sbjct: 43 IRAIVKTLIH--NPQLLDESSYLYRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYT-- 97
Query: 246 EREYACGKCAYRTAALPDLKLHLKNMH 272
E C C + H+ H
Sbjct: 98 EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.8 bits (84), Expect = 3e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
KPF CS C+Y SNL+ H+ H TE+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 27.5 bits (60), Expect = 0.50
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
SS KP+KC C++ K L+ H+ H+ EK
Sbjct: 2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.8 bits (53), Expect = 4.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDK 219
K F C C YAT+ +K H+ H+ +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.5 bits (52), Expect = 6.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 119 KPFACHLCPYRASRKYYITAHLN 141
KPF C LC Y K + AH+N
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMN 30
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 37.7 bits (87), Expect = 3e-04
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 82 NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
S+ K C C Q+ L + +G+K
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
Score = 35.0 bits (80), Expect = 0.002
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 79 AIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
+ HLG + KC C F ++ T + K C C + ++ +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRR-------STLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 139 H 139
Sbjct: 58 D 58
Score = 32.3 bits (73), Expect = 0.021
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
T + K C C Q + L ++
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
Score = 31.2 bits (70), Expect = 0.061
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
H GD+ CS C + S + C KC
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKC 45
Score = 25.8 bits (56), Expect = 4.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 233 SSNLQTHLRIHKTEREYACGKC 254
S + +IH +R C KC
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKC 24
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.4 bits (85), Expect = 3e-04
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 91 KPYKC--PHCDHCFTQKVVLQRHLLTHTGEK 119
+P+ C +C FT+ LQRH THTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.1 bits (66), Expect = 0.11
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIHKTER 247
+PF C++ C +S LQ H R H E+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.3 bits (83), Expect = 4e-04
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPYKCP C + K L HL HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 34.0 bits (77), Expect = 0.002
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
+ KP+ C C Y +NL HLR H E+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 1.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDK 219
++ + K + C C YA+ + H+ HTG+K
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 37.2 bits (85), Expect = 9e-04
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
+ C C+ ++ + +H CP+C F + Q H + K C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCL 73
Query: 125 LCPYRASRKYYITAH 139
C + I H
Sbjct: 74 ECMRTFKSSFSIWRH 88
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.1 bits (85), Expect = 9e-04
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 184 NATRTDKKKFVCFACPYATQYACYIKTHVMT-HTG---DKPFACSYCDYTCNQSSNLQTH 239
+ + + C C + T HV + H + + C C++ + L H
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Query: 240 -LRIHKTEREYAC 251
L+ H E +
Sbjct: 70 NLKYHPGEENFKL 82
Score = 32.1 bits (72), Expect = 0.051
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLT-HTG---EKPFACHLCPYRASRKYYITA 138
+ + Y+C +C + H+ + H + C C + R ++
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 139 H 139
H
Sbjct: 69 H 69
Score = 31.3 bits (70), Expect = 0.079
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE----YACGKCAYRTAALPDLKL 266
+ + + C YC + + H+ Y C +C + T L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 267 HLKNMH 272
H H
Sbjct: 69 HNLKYH 74
Score = 29.4 bits (65), Expect = 0.49
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 233 SSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMH 272
+ + + K E Y C C ++T L H+ + H
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
Score = 28.2 bits (62), Expect = 1.3
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 65 FLCLFCSYVATARIAIKNHL-SSHLGWK---PYKCPHCDHCFTQKVVLQRHLLT-HTGEK 119
+ C +C++ H+ S H Y C C+ + L H L H GE+
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
Query: 120 PFACHL 125
F +
Sbjct: 79 NFKLTM 84
Score = 27.8 bits (61), Expect = 1.6
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS 142
+ E + C C ++ T H++S
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDS 40
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.3 bits (78), Expect = 0.002
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KPY C HC F LQRH+ HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.0 bits (64), Expect = 0.13
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
KP+ C +C LQ H+RIH E+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 32.6 bits (73), Expect = 0.010
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
S G KPY CP C F +K + H+ +H G
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.3 bits (62), Expect = 0.34
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 115 HTGEKPFACHLCPYRASRKYYITAHLNS 142
+GEKP++C +C R RK ++ H+ S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS 32
Score = 26.4 bits (57), Expect = 1.7
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+G+KP++C C + + H+R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 30.9 bits (69), Expect = 0.030
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVV-LQRHLLTHTGEK 119
SS + KCP+CD F + LQRH+ H G K
Sbjct: 2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.031
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
K ++C C F Q V L H + H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.9 bits (69), Expect = 0.035
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+G +PF C C +N HL++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 29.0 bits (64), Expect = 0.17
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 87 HLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
G +P+ C C FT K RHL HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 30.6 bits (68), Expect = 0.038
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLR 241
K + C YC++ SSNL+TH++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.040
Identities = 23/191 (12%), Positives = 51/191 (26%), Gaps = 57/191 (29%)
Query: 64 QFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
+ Y + ++ +S + K ++ + L R ++ H
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKV-KLEN----EYALHRSIVDH-------- 452
Query: 124 HLCPYRASRKY----------------YITAHLN--------SLLSALLLQ-HFLASQPR 158
Y + + +I HL +L + L FL + R
Sbjct: 453 ----YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 159 RKCV--HCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHT 216
+ S I + + ++ + K ++C P + I +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFY------------KPYICDNDPKYERLVNAILDFLPKI- 555
Query: 217 GDKPFACSYCD 227
+ Y D
Sbjct: 556 EENLICSKYTD 566
Score = 28.3 bits (62), Expect = 3.8
Identities = 46/330 (13%), Positives = 84/330 (25%), Gaps = 115/330 (34%)
Query: 28 DVTC--LHCSLTT--PCVMKDMI----RHGRLCEFNSVVTSAKLQFLCLFCSYV------ 73
+++C L LTT V + H L + +T ++ L Y+
Sbjct: 263 NLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQD 317
Query: 74 -----------ATARIA--IKNHLSSHLGWKPYKCPHCD-------------------HC 101
+ IA I++ L++ W +K +CD
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 102 FTQKVVLQRHL-------------LTHTGEKPFACHLCPY----RASRKYYITAHLNSLL 144
F + V + + L Y + ++ I+
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---- 430
Query: 145 SALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVC--FACPYAT 202
+ +H I++H K F PY
Sbjct: 431 ---IYLELKVKLENEYALH---------RSIVDH--------YNIPKTFDSDDLIPPYLD 470
Query: 203 QY-ACYIKTHVMT--HTG-DKPFACSYCDY------------TCNQSSNLQTHLRIHKTE 246
QY +I H+ H F + D+ N S ++ L+ K
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 247 REYACGKCAYRTAALPDLK--LHLKNMHLY 274
+ Y C + + L +L
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLI 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.059
Identities = 42/249 (16%), Positives = 71/249 (28%), Gaps = 76/249 (30%)
Query: 5 AGDEDSSGL-LSGQ------DKASPGPPPADVTCLHCSLT--TPCVM--KDMIRHGRLCE 53
A DE ++ L G+ P L+ LT C + D+ H +
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAK 107
Query: 54 FNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLL 113
+ ++ L +Y+ ARI K +P+ L
Sbjct: 108 LLQENDTTLVKTKELIKNYIT-ARIMAK---------RPFDKKS-----------NSALF 146
Query: 114 TH--TGE-KPFAC------------HLCPYRASRKYYIT--AHLNSLL--SALLLQHFLA 154
G + A L R Y T + L+ SA L L
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEEL------RDLYQTYHVLVGDLIKFSAETLSE-LI 199
Query: 155 SQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVC---FACP--YATQYACYI- 208
++ + ++ E +E+ P+ T ++ +CP Q A Y+
Sbjct: 200 RTTLDAEKVFTQGL--NILEWLEN----PSNTPDKD--YLLSIPISCPLIGVIQLAHYVV 251
Query: 209 --KTHVMTH 215
K T
Sbjct: 252 TAKLLGFTP 260
Score = 29.6 bits (66), Expect = 1.2
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 64/164 (39%)
Query: 54 FNSVVTSAKLQFLCLFCSYVATARIA------IKNHLSSHLG----------------WK 91
S+ S L + YV TA++ ++++L G W+
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 92 PYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC-PYRASRKYYITAHLNSLLSALLLQ 150
F V +L G C+ P N+ L +L+
Sbjct: 291 S---------FFVSVRKAITVLFFIG---VRCYEAYP-------------NTSLPPSILE 325
Query: 151 HFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFV 194
+ +E + S M L N T+ + +V
Sbjct: 326 ---------DSLENNEGVPSPM-------LSISNLTQEQVQDYV 353
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 29.6 bits (67), Expect = 0.077
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 91 KPYKCPH--CDHCFTQKVVLQRHLLTHTGEK 119
K + C C + + L+ HL HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.7 bits (62), Expect = 0.44
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIHKTER 247
K C C ++S+L+ HLR H ER
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 29.4 bits (66), Expect = 0.081
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 91 KPYKCPHCDHCFTQKVVLQRH 111
K Y C C+ FT++ +L RH
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.32
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 81 KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
H + G K + + L+ + +
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.1 bits (59), Expect = 6.8
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 10/102 (9%)
Query: 178 HCLVCPNATRTDKKKFVCFACPYATQ--YAC------YIKTHVMTHTGDKPFACSYCDYT 229
+ + T+ + ++V + Q A Y + G+ DY
Sbjct: 128 KSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYM 187
Query: 230 --CNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
+ S H + + E+ K DL+ +
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.41
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
K F C YC+ +LQ HLRIH E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 0.70
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
K + C +C+ F K LQ HL HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.58
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
+ +K F C+ C+ T + S L H RIH
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 26.7 bits (58), Expect = 1.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
SS K +KC C+ F+ L +H HT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.65
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
+ Y+C C + L H+ +H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 1.2
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 2/81 (2%)
Query: 165 SEPISSDMSEIIEHCLVCPNATRTDK--KKFVCFACPYATQYACYIKTHVMTHTGDKPFA 222
S+ ++ +E+ V K + A T + +
Sbjct: 123 SDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQ 182
Query: 223 CSYCDYTCNQSSNLQTHLRIH 243
C C +L H+ H
Sbjct: 183 CHVCSAVLFSPLDLDAHVASH 203
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.8 bits (63), Expect = 0.66
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 60 SAKLQFLCLFCSYVATARIA-IKNHLSS-HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
+ + +C C+ V + +K H+ KC HC F K L H +
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 118 EKP 120
KP
Sbjct: 80 AKP 82
Score = 25.7 bits (55), Expect = 8.2
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 91 KPYKCPHCDHCFTQKVV-LQRHLLT-HTGEKPFACHLCPYRASRKYYITAHL 140
CP C+ + +V L++H+ + C C + K + H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.7 bits (59), Expect = 1.1
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 91 KPYKCPH--CDHCFTQKVVLQRHLLTHTGEK 119
K ++C C F ++ ++ H+ TH ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.0 bits (57), Expect = 2.2
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 218 DKPFACSY--CDYTCNQSSNLQTHLRIHKTER 247
DK F C + C T + N+++H++ H +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.9 bits (57), Expect = 2.1
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
+ + CS+C + L H+ +H+ +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARL 36
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.1 bits (59), Expect = 2.1
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 60 SAKLQFLCLFCSYVATARIA-IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
K C C V I +K H+ + + + C HC ++ H++ +
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Query: 119 KPF 121
P
Sbjct: 89 LPS 91
Score = 25.6 bits (55), Expect = 8.5
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHL 140
CP C + + + + + ++ F CH C + + H+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHV 82
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 26.4 bits (58), Expect = 2.3
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 80 IKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
I+ +KCP C FT Q L F C C
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTDLEANQ--LFDPMTGT-FRCTFC 45
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.1 bits (54), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 118 EKPFACHLCPYRASRKYYITAHLNS 142
EKPF+C LCP R+ +T HL +
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRT 25
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLN 141
C HC + V+ + T G+ + + AS YY
Sbjct: 32 LSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMFYYAAEMQV 80
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 25.4 bits (55), Expect = 2.9
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTERE 248
DKPF C+ C Q + HL +HK + E
Sbjct: 4 DKPFLCTAPG--CGQRFTNEDHLAVHKHKHE 32
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1,
phenylalanyl-tRNA SYNT beta subunit, structural
genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas
gingivalis}
Length = 213
Score = 28.0 bits (63), Expect = 3.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 141 NSLLSALLLQHFLASQPRRKCVHCSEPISSDMS 173
NSL + + S PR V P+S +++
Sbjct: 28 NSLTAGSYYEGL-KSHPREMAVELMNPLSQELN 59
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 25.1 bits (54), Expect = 3.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
KP +C C FTQ L H+ HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural
genomics, midwest center for structural GE protein
structure initiative; HET: MSE; 2.09A {Bacteroides
fragilis}
Length = 213
Score = 27.6 bits (62), Expect = 3.6
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 130 ASRKYY--ITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMS 173
+ + NSL A S P + V P+S+D++
Sbjct: 18 VGCGFNEILN---NSLTRAAYYDGL-ESYPSKNLVMLLNPLSADLN 59
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 26.4 bits (57), Expect = 4.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTHTGE 118
Y+C HCD L HL H E
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNEE 51
Score = 25.6 bits (55), Expect = 7.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYR 257
+ + C +CD ++ L +HL IH E + K A R
Sbjct: 19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ----KRAKR 58
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics; HET: MSE; 1.75A {Neisseria meningitidis
serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Length = 275
Score = 27.5 bits (62), Expect = 4.1
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 37 TTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCL---FCSYVATARIAIKN 82
T P ++DM H V AK + F +Y + A
Sbjct: 57 TLPVSLRDMCYHTE-----CVARGAKNAMIVSDLPFGAYQQSKEQAFAA 100
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural
genomics, PSI, protein structure initiative; 2.80A
{Mycobacterium tuberculosis} SCOP: c.1.12.8
Length = 281
Score = 27.5 bits (62), Expect = 4.2
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 37 TTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCL---FCSYVATARIAIKN 82
T P + ++I R VV A + F SY A A+
Sbjct: 74 TVPISIDELIPLVR-----GVVRGAPHALVVADLPFGSYEAGPTAALAA 117
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.8 bits (53), Expect = 4.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTHTG 117
+PY C C F+ K ++ H HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.9 bits (53), Expect = 5.6
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 85 SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
SS +C C F +L H H GE
Sbjct: 5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 27.0 bits (59), Expect = 6.4
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 91 KPYKCPHCDHCFTQKVV-LQRHLLTH 115
+ KC C F + L+ HL
Sbjct: 168 EDLKCWRCGETFGRHFTKLKAHLQEE 193
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 23.8 bits (51), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 91 KPYKC--PHCDHCFTQKVVLQRHLLTHT 116
+PY C P CD F + L RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F*
1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F*
2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F*
3ag1_F* 3ag2_F* ...
Length = 98
Score = 25.7 bits (56), Expect = 8.9
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 91 KPYKCPHCDHCFTQKVVLQRHLLTH 115
+ +CP C + L H L H
Sbjct: 78 EAQRCPSCGTHY----KLVPHQLAH 98
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.0 bits (51), Expect = 9.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 93 YKCPHCDHCFTQKVVLQRHLLTH 115
YKC C+ F +K L RH H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein,
metallo-protein, oxidoreductase; NMR {Saccharomyces
cerevisiae}
Length = 80
Score = 25.1 bits (55), Expect = 9.4
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 91 KPYKCPHCDHCFTQKVV 107
+ +C C + V
Sbjct: 55 EVARCWECGSVYKLNPV 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.135 0.452
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,949,621
Number of extensions: 214167
Number of successful extensions: 1946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1706
Number of HSP's successfully gapped: 768
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)