BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4797
(333 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus]
gi|77416595|sp|Q4KLN6.1|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus]
gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus]
Length = 390
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/227 (51%), Positives = 143/227 (62%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
SK + +D + L+ AP + ++E EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45 SKAARRIFQDSAELES-KAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
TAEEVDLSK + + N + + E + + +R
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-F 162
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I K IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSKER 191
>gi|392334327|ref|XP_003753140.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Rattus norvegicus]
gi|392354916|ref|XP_003751887.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Rattus norvegicus]
Length = 390
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/227 (51%), Positives = 143/227 (62%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
SK + +D + L+ AP + ++E EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45 SKAARRIFQDSAELES-KAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
TAEEVDLSK + + N + + E + + +R
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-F 162
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I K IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSKER 191
>gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus]
Length = 411
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 142/227 (62%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
SK + +D + L+ AP +VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 66 SKAARRIFQDSAELES-KAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 124
Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
TAEEVDLSK + + N + + E + + +R
Sbjct: 125 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCF- 183
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I K IETMPCVKKKADWALRWI D+ +++
Sbjct: 184 YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 243
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 244 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 290
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFY
Sbjct: 125 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFY 184
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 185 GFQIAMENIHSEMYSLLIDTYIKDPKER 212
>gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus]
gi|132626|sp|P11157.1|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus]
gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus]
gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus]
gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus]
gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus]
gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus]
gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus]
gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus]
gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus]
gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus]
gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus]
Length = 390
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 142/227 (62%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
SK + +D + L+ AP +VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45 SKAARRIFQDSAELES-KAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
TAEEVDLSK + + N + + E + + +R
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCF- 162
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I K IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDPKER 191
>gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus]
Length = 390
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 142/227 (62%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
SK + +D + L+ AP +VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45 SKAARRIFQDSAELES-KAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
TAEEVDLSK + + N + + E + + +R
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCF- 162
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I K IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVMAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISH LAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDPKER 191
>gi|440894701|gb|ELR47090.1| Ribonucleoside-diphosphate reductase subunit M2 [Bos grunniens
mutus]
Length = 383
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/212 (54%), Positives = 138/212 (65%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
++SAP +VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 55 KLSAP---SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 111
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 112 ALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 170
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+A+++GERV+AFA+VEGIFF
Sbjct: 171 SLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFF 230
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 231 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 262
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 99 EEVDLSKDIQHWEALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 158
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 159 QIAMENIHSEMYSLLIDTYIKDSKER 184
>gi|346644876|ref|NP_001231110.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Bos
taurus]
gi|296482361|tpg|DAA24476.1| TPA: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus]
Length = 389
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/212 (54%), Positives = 138/212 (65%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
++SAP +VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 61 KLSAP---SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 117
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 118 ALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 176
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+A+++GERV+AFA+VEGIFF
Sbjct: 177 SLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFF 236
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 268
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 105 EEVDLSKDIQHWEALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 164
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 165 QIAMENIHSEMYSLLIDTYIKDSKER 190
>gi|444731691|gb|ELW72040.1| Ribonucleoside-diphosphate reductase subunit M2 [Tupaia chinensis]
Length = 357
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/220 (53%), Positives = 139/220 (63%), Gaps = 37/220 (16%)
Query: 70 IKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL 129
+ D +T +V AP VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDL
Sbjct: 21 LADVATKSKVPAP---GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDL 77
Query: 130 SKVV--------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
SK + + N + + E + + +R Y F+I +
Sbjct: 78 SKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAM 136
Query: 164 APGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAF 216
Y + I K IETMPCVKKKADWALRWI D+ +++GERV+AF
Sbjct: 137 ENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAF 196
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 197 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 236
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 71 TAEEVDLSKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 130
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 131 GFQIAMENIHSEMYSLLIDTYIKDSKER 158
>gi|2500209|sp|Q60561.1|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus]
Length = 386
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 142/234 (60%), Gaps = 43/234 (18%)
Query: 65 LSDSPIKDKSTLKQVSAPVQE---------NVETEPLLRDNPRRFVIFPIQYQDIWKMYK 115
LS +P+ +++ V E +VE EPLLR+NPRRFV+FPI+Y DIWKMYK
Sbjct: 37 LSATPVLASKVARRILQDVAEPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYK 96
Query: 116 KAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGEEKA 149
KAEASFWTAEEVDLSK + + N + + E +
Sbjct: 97 KAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQV 156
Query: 150 SHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWI 202
+ +R Y F+I + Y + I K IETMPCVKKKADWALRWI
Sbjct: 157 TEARCF-YGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI 215
Query: 203 ADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 216 GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSKER 191
>gi|354494802|ref|XP_003509524.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Cricetulus griseus]
gi|344243911|gb|EGW00015.1| Ribonucleoside-diphosphate reductase subunit M2 [Cricetulus
griseus]
Length = 390
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 138/222 (62%), Gaps = 39/222 (17%)
Query: 73 KSTLKQVSAP-----VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
+ L+ V+ P +VE EPLLR+NPRRFV+FPI+Y DIWKMYKKAEASFWTAEEV
Sbjct: 49 RRILQDVAEPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEV 108
Query: 128 DLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEPYLFRI 161
DLSK + + N + + E + + +R Y F+I
Sbjct: 109 DLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQI 167
Query: 162 KLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVI 214
+ Y + I K IETMPCVKKKADWALRWI D+ +++GERV+
Sbjct: 168 AMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 227
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 228 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSKER 191
>gi|395509266|ref|XP_003758922.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Sarcophilus harrisii]
Length = 438
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 135/214 (63%), Gaps = 34/214 (15%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-- 133
+K S P + E EPLLR+NPRRFVIFPI+YQDIW MYKKAEASFWTAEEVDLSK +
Sbjct: 105 VKAPSEPAPSSSEDEPLLRENPRRFVIFPIEYQDIWHMYKKAEASFWTAEEVDLSKDIQH 164
Query: 134 ------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
+ N + + E + + +R Y F+I +
Sbjct: 165 WEALKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSE 223
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K IET+PCVKKKADWALRWI D+ +++GERV+AFA+VEGI
Sbjct: 224 MYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI 283
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 284 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 317
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 154 EEVDLSKDIQHWEALKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 213
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 214 QIAMENIHSEMYSLLIDTYIKDSKER 239
>gi|335306880|ref|XP_003360612.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Sus
scrofa]
Length = 401
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/212 (54%), Positives = 137/212 (64%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
++SAP +VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 73 KLSAP---SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 129
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 130 TLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 188
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 189 SLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 248
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 249 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 280
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 115 TAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 174
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 175 GFQIAMENIHSEMYSLLIDTYIKDSKER 202
>gi|355717368|gb|AES05910.1| ribonucleotide reductase M2 polypeptide [Mustela putorius furo]
Length = 391
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 132/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
NVE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 69 NVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 128
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 129 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 187
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 188 KDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 247
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 248 WLKKRGLMPGLTFSNELISRDEGL 271
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 106 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 165
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 GFQIAMENIHSEMYSLLIDTYIKDSKER 193
>gi|363732458|ref|XP_001231545.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
1 [Gallus gallus]
Length = 384
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 140/230 (60%), Gaps = 39/230 (16%)
Query: 65 LSDSPIKDKSTLKQV-----SAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEA 119
LS S + T +++ PV E EPLLR+NPRRFVIFPIQY DIW+MYKKAEA
Sbjct: 35 LSSSRVLASKTARKIFQESEGTPVARGAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEA 94
Query: 120 SFWTAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSR 153
SFWTAEEVDLSK + + N + + E + + +R
Sbjct: 95 SFWTAEEVDLSKDLQHWESLKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEAR 154
Query: 154 NEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEA 206
Y F+I + Y + I K IET+PCVKKKADWA+RWI D+
Sbjct: 155 CF-YGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWIGDKK 213
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 214 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 263
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFY
Sbjct: 98 TAEEVDLSKDLQHWESLKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFY 157
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 158 GFQIAMENIHSEMYSLLIDTYIKDSKER 185
>gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
tropicalis]
gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
tropicalis]
Length = 386
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/248 (48%), Positives = 150/248 (60%), Gaps = 36/248 (14%)
Query: 43 NINLFLPQNTLKDL-TNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFV 101
N+ L +NT L + + SK + + ++ T K AP ++ EPLL+DNP RFV
Sbjct: 20 NLTLAEKENTPPSLNSTRVLASKTARNIFQEAETTKS-KAPKDPRIQDEPLLKDNPHRFV 78
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VT 135
IFPIQY DIW+MYKKAEASFWTAEEVDLSK + +
Sbjct: 79 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWESLKAEEKYFISHVLAFFAASDGIV 138
Query: 136 NFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETM 188
N + + E + + +R Y F+I + Y + I K IET+
Sbjct: 139 NENLVERFSQEVQVTEARCF-YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETL 197
Query: 189 PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 248
PCVKKKADWALRWI+D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNE
Sbjct: 198 PCVKKKADWALRWISDKQATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 257
Query: 249 LISRDEDL 256
LISRDE L
Sbjct: 258 LISRDEGL 265
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLRHWESLKAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDPKER 187
>gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Ailuropoda melanoleuca]
Length = 393
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/212 (54%), Positives = 136/212 (64%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+V AP +VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 65 KVLAP---SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 121
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 122 SLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 180
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 181 SLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 240
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 241 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 107 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 166
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 167 GFQIAMENIHSEMYSLLIDTYIKDSKER 194
>gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis]
gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
tropicalis]
Length = 386
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/248 (48%), Positives = 149/248 (60%), Gaps = 36/248 (14%)
Query: 43 NINLFLPQNTLKDL-TNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFV 101
N+ L +NT L + + SK + + ++ T K AP ++ EPLL+DNP RFV
Sbjct: 20 NLTLAEKENTPPSLNSTRVLASKTARNIFQEAETTKS-KAPKDPRIQDEPLLKDNPHRFV 78
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VT 135
IFPIQY DIW+MYKKAEASFWTAEEVDLSK + +
Sbjct: 79 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWESLKAEEKYFISHVLAFFAASDGIV 138
Query: 136 NFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETM 188
N + + E + + +R Y F+I + Y + I K IET+
Sbjct: 139 NENLVERFSKEVQVTEARCF-YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETL 197
Query: 189 PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 248
PCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNE
Sbjct: 198 PCVKKKADWALRWIGDKQATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 257
Query: 249 LISRDEDL 256
LISRDE L
Sbjct: 258 LISRDEGL 265
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +EKYFISHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLRHWESLKAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDPKER 187
>gi|351701528|gb|EHB04447.1| Ribonucleoside-diphosphate reductase subunit M2 [Heterocephalus
glaber]
Length = 389
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 132/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK V
Sbjct: 66 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDVQHWEALKPEERY 125
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 126 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 184
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 185 KDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 244
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 245 WLKKRGLMPGLTFSNELISRDEGL 268
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDVQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDSKER 190
>gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa]
Length = 355
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/212 (54%), Positives = 137/212 (64%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
++SAP +VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 44 KLSAP---SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 100
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 101 TLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 159
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 160 SLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 219
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 220 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 251
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 86 TAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 145
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 146 GFQIAMENIHSEMYSLLIDTYIKDSKER 173
>gi|344280318|ref|XP_003411931.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2
[Loxodonta africana]
Length = 386
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 132/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 63 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPEERY 122
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 123 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 181
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 182 KDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 241
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 242 WLKKRGLMPGLTFSNELISRDEGL 265
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 102 EEVDLSKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDSKER 187
>gi|405977462|gb|EKC41913.1| Ribonucleoside-diphosphate reductase small chain [Crassostrea
gigas]
Length = 369
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 156/245 (63%), Gaps = 42/245 (17%)
Query: 49 PQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENV----ETEPLLRDNPRRFVIFP 104
P+ T +++T L++SK++D ++++ +++ + P+++ + EPLL DNPRRFV+FP
Sbjct: 7 PRAT-QEITAQLRKSKIND---ENENIIEKTNEPIKKTSRKPKKVEPLLEDNPRRFVVFP 62
Query: 105 IQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFE 138
IQY DIW+MYKKAEASFWTAEEVDLSK + + N
Sbjct: 63 IQYHDIWQMYKKAEASFWTAEEVDLSKDLGHWEALKDEEQHFISHVLAFFAASDGIVNEN 122
Query: 139 IRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCV 191
+ + E +A+ +R Y F+I + Y + I K IET+PCV
Sbjct: 123 LVERFSKEVQATEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPKQRDYLFNAIETLPCV 181
Query: 192 KKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 251
KKKADWA++WI D+ + FGERV+AFA+VEGIFFSGSFA+IFWLKKRG+MPGLTFSNELIS
Sbjct: 182 KKKADWAIKWIGDQEADFGERVVAFAAVEGIFFSGSFAAIFWLKKRGIMPGLTFSNELIS 241
Query: 252 RDEDL 256
RDE L
Sbjct: 242 RDEGL 246
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E++FISHVLAFFAASDGIVNENLVERF++EVQ TEARCFYGF
Sbjct: 83 EEVDLSKDLGHWEALKDEEQHFISHVLAFFAASDGIVNENLVERFSKEVQATEARCFYGF 142
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD ++R
Sbjct: 143 QIAMENIHSEMYSLLIDTYIKDPKQR 168
>gi|338714129|ref|XP_001502384.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Equus
caballus]
Length = 413
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/212 (54%), Positives = 136/212 (64%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+V AP +VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 85 KVPAP---SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 141
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 142 ALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 200
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 201 SLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 260
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 261 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 292
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 127 TAEEVDLSKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 186
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 187 GFQIAMENIHSEMYSLLIDTYIKDSKER 214
>gi|355751100|gb|EHH55355.1| hypothetical protein EGM_04551, partial [Macaca fascicularis]
Length = 366
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/226 (51%), Positives = 142/226 (62%), Gaps = 40/226 (17%)
Query: 64 KLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWT 123
++ P++ K+ + +AP VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWT
Sbjct: 27 RIFQEPVEPKT---KAAAP---GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWT 80
Query: 124 AEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEPY 157
AEEVDLSK + + N + + E + + +R Y
Sbjct: 81 AEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-Y 139
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFG 210
F+I + Y + I K IETMPCVKKKADWALRWI D+ +++G
Sbjct: 140 GFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYG 199
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 200 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 245
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 80 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 139
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 140 GFQIAMENIHSEMYSLLIDTYIKDPKER 167
>gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis]
gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis]
Length = 386
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/247 (47%), Positives = 146/247 (59%), Gaps = 34/247 (13%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVI 102
N+ L +NT L ++ + + I ++ + AP +E EPLL+DNP RFVI
Sbjct: 20 NLTLTEKENTPSTLNSSRVLASKTARKIFHETETPKSKAPKNPRLEDEPLLKDNPHRFVI 79
Query: 103 FPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTN 136
FPIQY DIW+MYKKAEASFWTAEEVDLSK + + N
Sbjct: 80 FPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWESLKKEEKYFISHVLAFFAASDGIVN 139
Query: 137 FEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMP 189
+ + E + + +R Y F+I + Y + + K IET+P
Sbjct: 140 ENLVERFSKEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYVKDPKEREYLFNAIETLP 198
Query: 190 CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 249
CVKKKADWAL WI D+ ++FGERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNEL
Sbjct: 199 CVKKKADWALHWIGDKQATFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 258
Query: 250 ISRDEDL 256
ISRDE L
Sbjct: 259 ISRDEGL 265
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L ++EKYFISHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLQHWESLKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTY+KD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYVKDPKER 187
>gi|348553865|ref|XP_003462746.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Cavia porcellus]
Length = 484
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 132/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 161 SVEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPEERY 220
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 221 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 279
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 280 KDSREREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 339
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 340 WLKKRGLMPGLTFSNELISRDEGL 363
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 76/88 (86%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 198 TAEEVDLSKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 257
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD ER
Sbjct: 258 GFQIAMENIHSEMYSLLIDTYIKDSRER 285
>gi|266918|sp|P07201.2|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit;
AltName: Full=p41
gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula
solidissima]
Length = 384
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/242 (49%), Positives = 148/242 (61%), Gaps = 43/242 (17%)
Query: 49 PQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPV-QENVETEPLLRDNPRRFVIFPIQY 107
P+ L ++TN Q+S K+ LKQ PV +++ + EPLL DNPRRFV+ PIQY
Sbjct: 28 PKKVLGEITN-FQRST-------QKTPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQY 79
Query: 108 QDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRA 141
DIWKMYKKAEASFWTAEEVDLSK + + N +
Sbjct: 80 HDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVE 139
Query: 142 LKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKK 194
+ E + + +R Y F+I + Y + I + IETMPCVK+K
Sbjct: 140 RFSKEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEK 198
Query: 195 ADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
ADWA+RWI D++SS+ ERV+AFA+VEGIFFSGSFASIFWLKKRG+MPGLTFSNELISRDE
Sbjct: 199 ADWAMRWINDDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDE 258
Query: 255 DL 256
L
Sbjct: 259 GL 260
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 78/86 (90%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++HW L ++EK+FISHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYGF
Sbjct: 97 EEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGF 156
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 157 QIAMENIHSEMYSLLIDTYIKDPQER 182
>gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo
sapiens]
gi|400979|sp|P31350.1|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens]
gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens]
gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens]
gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
gi|62702173|gb|AAX93099.1| unknown [Homo sapiens]
gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens]
gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct]
Length = 389
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 135/212 (63%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+ +AP VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 61 KAAAP---GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 117
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 118 SLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 176
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 177 SLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 236
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 268
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDPKER 190
>gi|73979721|ref|XP_540076.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
1 [Canis lupus familiaris]
Length = 394
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 135/212 (63%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+V AP + E EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 66 KVLAP---SAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 122
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 123 SLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 181
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 182 SLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 241
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 242 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 108 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 167
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 168 GFQIAMENIHSEMYSLLIDTYIKDSKER 195
>gi|402890069|ref|XP_003908316.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Papio
anubis]
Length = 389
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 131/203 (64%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 67 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYF 126
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E + + +R Y F+I + Y + I
Sbjct: 127 ISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYIK 185
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 186 DPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFW 245
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 246 LKKRGLMPGLTFSNELISRDEGL 268
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDPKER 190
>gi|395828551|ref|XP_003787435.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2
[Otolemur garnettii]
Length = 388
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 132/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 65 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLKPEERY 124
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 125 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 183
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 184 KDSQEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 243
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 244 WLKKRGLMPGLTFSNELISRDEGL 267
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 102 TAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 161
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 GFQIAMENIHSEMYSLLIDTYIKDSQER 189
>gi|410034790|ref|XP_003949799.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase subunit M2 [Pan troglodytes]
Length = 456
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 134/213 (62%), Gaps = 34/213 (15%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--- 133
+Q S VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 124 QQKSKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHW 183
Query: 134 -----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ N + + E + + +R Y F+I +
Sbjct: 184 ESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEM 242
Query: 171 YKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIF
Sbjct: 243 YSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIF 302
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 303 FSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 335
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 170 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 229
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 230 GFQIAMENIHSEMYSLLIDTYIKDPKER 257
>gi|345110753|pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
gi|345110754|pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
gi|345110755|pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
gi|345110756|pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 131/203 (64%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYF 62
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E + + +R Y F+I + Y + I
Sbjct: 63 ISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENIHSEMYSLLIDTYIK 121
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 122 DPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFW 181
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 182 LKKRGLMPGLTFSNELISRDEGL 204
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 39 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 98
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 99 GFQIAMENIHSEMYSLLIDTYIKDPKER 126
>gi|432100630|gb|ELK29158.1| Ribonucleoside-diphosphate reductase subunit M2, partial [Myotis
davidii]
Length = 331
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 130/211 (61%), Gaps = 35/211 (16%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------ 131
QV AP + EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 3 QVPAP---GAQEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWE 59
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYK 172
V+ F E R E Y F+I + Y
Sbjct: 60 VLKSEERYFISHVLAFFAASDGIVNENLVERFRQEVQITEARCFYGFQIAMENIHSEMYS 119
Query: 173 VKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFS
Sbjct: 120 LLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFS 179
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 GSFASIFWLKKRGLMPGLTFSNELISRDEGL 210
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 76/88 (86%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW L +E+YFISHVLAFFAASDGIVNENLVERF QEVQITEARCFY
Sbjct: 45 TAEEVDLSKDLQHWEVLKSEERYFISHVLAFFAASDGIVNENLVERFRQEVQITEARCFY 104
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 105 GFQIAMENIHSEMYSLLIDTYIKDPKER 132
>gi|149408710|ref|XP_001506085.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2
[Ornithorhynchus anatinus]
Length = 394
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 113/211 (53%), Positives = 134/211 (63%), Gaps = 34/211 (16%)
Query: 79 VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----- 133
VS+ VE EPLL++NPRRFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 64 VSSWASPRVEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES 123
Query: 134 ---------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYK 172
+ N + + E + + +R Y F+I + Y
Sbjct: 124 LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYS 182
Query: 173 VKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
+ I K IET+PCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFS
Sbjct: 183 LLIDTYIKEPKEREFLFNAIETLPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFS 242
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 243 GSFASIFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 108 TAEEVDLSKDIQHWESLKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 167
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIK+ +ER
Sbjct: 168 GFQIAMENIHSEMYSLLIDTYIKEPKER 195
>gi|431911830|gb|ELK13974.1| Ribonucleoside-diphosphate reductase subunit M2 [Pteropus alecto]
Length = 364
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 132/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+V+ EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 41 SVQDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWETLKPEERH 100
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 101 FISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENIHSEMYSLLIDTYI 159
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 160 KDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 219
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 220 WLKKRGLMPGLTFSNELISRDEGL 243
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW L +E++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 78 TAEEVDLSKDLQHWETLKPEERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 137
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 138 GFQIAMENIHSEMYSLLIDTYIKDSKER 165
>gi|397531939|gb|AFO54479.1| ribonucleotide reductase small subunit R2ii [Carassius carassius]
Length = 386
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 128/203 (63%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLL+DNP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 64 VEEEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYF 123
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + T E + + +R Y F+I + Y + I
Sbjct: 124 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIK 182
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 183 DPKERDFLFNAIETMPCVKKKADWALNWIGDKNAQYGERVVAFAAVEGIFFSGSFASIFW 242
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGL 265
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDPKER 187
>gi|410250512|gb|JAA13223.1| ribonucleotide reductase M2 [Pan troglodytes]
gi|410250514|gb|JAA13224.1| ribonucleotide reductase M2 [Pan troglodytes]
Length = 449
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 141/226 (62%), Gaps = 40/226 (17%)
Query: 64 KLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWT 123
++ P + KS + +AP VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWT
Sbjct: 110 RIFQEPAEPKS---KAAAP---GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWT 163
Query: 124 AEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEPY 157
AEEVDLSK + + N + + E + + +R Y
Sbjct: 164 AEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-Y 222
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFG 210
F+I + Y + I K IETMPCVKKKADWALRWI D+ +++G
Sbjct: 223 GFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYG 282
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 283 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 328
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 163 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 222
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 223 GFQIAMENIHSEMYSLLIDTYIKDPKER 250
>gi|332247268|ref|XP_003272775.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
1 [Nomascus leucogenys]
Length = 434
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 131/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 111 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 170
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 171 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 229
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 230 KDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 289
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 290 WLKKRGLMPGLTFSNELISRDEGL 313
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 148 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 207
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 208 GFQIAMENIHSEMYSLLIDTYIKDPKER 235
>gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo
sapiens]
Length = 449
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 131/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 185
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 186 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 244
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 245 KDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 304
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 305 WLKKRGLMPGLTFSNELISRDEGL 328
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 163 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 222
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 223 GFQIAMENIHSEMYSLLIDTYIKDPKER 250
>gi|397513395|ref|XP_003827001.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Pan
paniscus]
Length = 449
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 131/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 185
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 186 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 244
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 245 KDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 304
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 305 WLKKRGLMPGLTFSNELISRDEGL 328
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 163 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 222
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 223 GFQIAMENIHSEMYSLLIDTYIKDPKER 250
>gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens]
gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens]
Length = 449
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 131/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 185
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 186 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 244
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 245 KDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 304
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 305 WLKKRGLMPGLTFSNELISRDEGL 328
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 163 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 222
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 223 GFQIAMENIHSEMYSLLIDTYIKDPKER 250
>gi|75076796|sp|Q4R7Q7.1|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis]
Length = 389
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 131/203 (64%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 67 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYF 126
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E + + +R Y F+I + Y + I
Sbjct: 127 ISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYIK 185
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCV+KKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 186 DPKEREFLFNAIETMPCVEKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFW 245
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 246 LKKRGLMPGLTFSNELISRDEGL 268
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDPKER 190
>gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 136/215 (63%), Gaps = 37/215 (17%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV- 133
++ + +AP VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 1 SMTKAAAP---GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQ 57
Query: 134 -------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGI 168
+ N + + E + + +R Y F+I +
Sbjct: 58 HWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENIHS 116
Query: 169 CRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEG 221
Y + I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEG
Sbjct: 117 EMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEG 176
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
IFFSGSFASIFWLKKRG MPGLTFSNELISRDE L
Sbjct: 177 IFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGL 211
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 46 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 105
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 106 GFQIAMENIHSEMYSLLIDTYIKDPKER 133
>gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Anolis carolinensis]
Length = 390
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 130/204 (63%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N + EPLLRDNP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 67 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWESLKPDEKY 126
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 127 FISHILAFFAASDGIVNENLVERFSQEIQVTEARC-FYGFQIAMENIHSEMYSLLIDTYI 185
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IET+PCVK+KADWA+RWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 186 KDPKEREYLFNAIETLPCVKRKADWAMRWIGDKHATYGERVVAFAAVEGIFFSGSFASIF 245
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 246 WLKKRGLMPGLTFSNELISRDEGL 269
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L DEKYFISH+LAFFAASDGIVNENLVERF+QE+Q+TEARCFYGF
Sbjct: 106 EEVDLSKDLQHWESLKPDEKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDPKER 191
>gi|391328598|ref|XP_003738774.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Metaseiulus occidentalis]
Length = 374
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 153/251 (60%), Gaps = 38/251 (15%)
Query: 41 EPNINLFLPQNTLKDLTNNLQQSKL--SDSPIKDKSTLKQVSAPVQENVETEPLLRDNPR 98
E N+N+ +N++K+ N +Q S + D ++ +V+ + VE+EPLLR+NP
Sbjct: 6 EKNLNIVNKENSVKN--NRIQNSNIIEKDENKAHRNESSEVAIKKKTYVESEPLLRENPN 63
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------------- 133
RFV+FPI+Y DIW+MYKKA+ASFWTAEEVDL K +
Sbjct: 64 RFVLFPIEYPDIWRMYKKAQASFWTAEEVDLGKDMADWHKMSSQEQEFIKHILAFFAASD 123
Query: 134 -VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTI 185
+ N + + E + + +R Y F++ + Y + IT + I
Sbjct: 124 GIVNENLVERFSQEVQVTEARC-FYGFQVMMENIHSEMYSLLLNTYITDPMERDHLFRAI 182
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
ETMPC+KKKADWAL WI ++ +++GERV+AFA+VEGIFFSG+FASIFWLKKRGLMPGLTF
Sbjct: 183 ETMPCIKKKADWALNWIGNQNATYGERVVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTF 242
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 243 SNELISRDEGL 253
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W+K++ E+ FI H+LAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 90 EEVDLGKDMADWHKMSSQEQEFIKHILAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 149
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSEMYSLL++TYI D ER
Sbjct: 150 QVMMENIHSEMYSLLLNTYITDPMER 175
>gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Anolis carolinensis]
Length = 394
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 130/204 (63%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N + EPLLRDNP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 71 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWESLKPDEKY 130
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 131 FISHILAFFAASDGIVNENLVERFSQEIQVTEARC-FYGFQIAMENIHSEMYSLLIDTYI 189
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IET+PCVK+KADWA+RWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 190 KDPKEREYLFNAIETLPCVKRKADWAMRWIGDKHATYGERVVAFAAVEGIFFSGSFASIF 249
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 250 WLKKRGLMPGLTFSNELISRDEGL 273
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L DEKYFISH+LAFFAASDGIVNENLVERF+QE+Q+TEARCFYGF
Sbjct: 110 EEVDLSKDLQHWESLKPDEKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGF 169
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 170 QIAMENIHSEMYSLLIDTYIKDPKER 195
>gi|126303832|ref|XP_001381111.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Monodelphis domestica]
Length = 493
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 132/213 (61%), Gaps = 34/213 (15%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--- 133
K + P + E EPLLR+NPRRFVIFPI+Y DIW MYKKAEASFWTAEEVDLSK +
Sbjct: 161 KAPNEPASPSKEDEPLLRENPRRFVIFPIEYHDIWHMYKKAEASFWTAEEVDLSKDIQHW 220
Query: 134 -----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ N + + E + + +R Y F+I +
Sbjct: 221 ETLKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCF-YGFQIAMENIHSEM 279
Query: 171 YKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + I K IET+PCVKKKADWALRWI D +++GERV+AFA+VEGIF
Sbjct: 280 YSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWIGDNEATYGERVVAFAAVEGIF 339
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 340 FSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 372
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 209 EEVDLSKDIQHWETLKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 268
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 269 QIAMENIHSEMYSLLIDTYIKDPKER 294
>gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Pongo
abelii]
Length = 449
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 132/204 (64%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 126 DVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 185
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 186 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYI 244
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IET+PCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 245 KDPKEREFLFNAIETLPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 304
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 305 WLKKRGLMPGLTFSNELISRDEGL 328
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 163 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 222
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 223 GFQIAMENIHSEMYSLLIDTYIKDPKER 250
>gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio]
gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Danio rerio]
gi|3914657|sp|P79733.1|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase protein R2 class
I; AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio]
gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio]
gi|347311297|gb|AEO79839.1| reductase M2 polypeptide variant 1 [Danio rerio]
gi|347311299|gb|AEO79840.1| reductase M2 polypeptide variant 2 [Danio rerio]
gi|347311301|gb|AEO79841.1| reductase M2 polypeptide variant 3a [Danio rerio]
gi|347311303|gb|AEO79842.1| reductase M2 polypeptide variant 3b [Danio rerio]
Length = 386
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 128/203 (63%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLL++NP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 64 VEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYF 123
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + T E + + +R Y F+I + Y + I
Sbjct: 124 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIK 182
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 183 DSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGIFFSGSFASIFW 242
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGL 265
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDSKER 187
>gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis]
gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis]
Length = 386
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 130/209 (62%), Gaps = 34/209 (16%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------- 133
P EPLL+DNP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 58 VPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLK 117
Query: 134 -------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+ N + + E + + +R Y F+I + Y +
Sbjct: 118 TDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCF-YGFQIAMENIHSEMYSLL 176
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I K IET+PCVKKKADWALRWI+D+ +++GERV+AFA+VEGIFFSGS
Sbjct: 177 IDTYIKDPKERGFLFNAIETLPCVKKKADWALRWISDKQATYGERVVAFAAVEGIFFSGS 236
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 FASIFWLKKRGLMPGLTFSNELISRDEGL 265
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE+YFISHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDIQHWESLKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDPKER 187
>gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
Length = 386
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 128/203 (63%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLL++NP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 64 VEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYF 123
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + T E + + +R Y F+I + Y + I
Sbjct: 124 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIK 182
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 183 DSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGIFFSGSFASIFW 242
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGL 265
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDSKER 187
>gi|347311307|gb|AEO79844.1| reductase M2 polypeptide variant 3d [Danio rerio]
Length = 334
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/214 (52%), Positives = 132/214 (61%), Gaps = 34/214 (15%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-- 133
+K S + VE EPLL++NP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 1 MKGQSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 60
Query: 134 ------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
+ N + T E + + +R Y F+I +
Sbjct: 61 WDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSE 119
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGI
Sbjct: 120 MYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGI 179
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 50 EEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 109
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 110 QIAMENIHSEMYSLLIDTYIKDSKER 135
>gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis]
gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis]
Length = 384
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 145/248 (58%), Gaps = 43/248 (17%)
Query: 51 NTLKDLTNNLQQSKLSDSPIKDKSTLKQVS---------APVQENVETEPLLRDNPRRFV 101
N LK +T + ++S + K+++T++ VS A + N E EPLLR+NP RFV
Sbjct: 17 NALKKITTDNEKSATITTSYKEENTVQMVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFV 76
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------VVVTNFEIRALKTGEEKA 149
I PIQY +IW+MYKKAEASFWTAEEVDLSK + + + +
Sbjct: 77 ILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDFAKLNDHERMFVSHVLAFFAASDGIV 136
Query: 150 SHSRNEPYLFRIKLAPGGICRYKVK---------------------KGGKITGGKTIETM 188
+ + E + +++ P C Y + K K+ IETM
Sbjct: 137 NENLVECFCQEVQI-PEARCFYGFQIAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETM 195
Query: 189 PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 248
PCV KKA WAL WI + +SFGER+IAFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNE
Sbjct: 196 PCVMKKAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNE 255
Query: 249 LISRDEDL 256
LISRDE L
Sbjct: 256 LISRDEGL 263
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D + KL E+ F+SHVLAFFAASDGIVNENLVE F QEVQI EARCFYGF
Sbjct: 100 EEVDLSKDSHDFAKLNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGF 159
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLI++ IKD+ E+
Sbjct: 160 QIAIENIHSEMYSLLIESLIKDKAEK 185
>gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 3 [Anolis carolinensis]
Length = 391
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 135/220 (61%), Gaps = 34/220 (15%)
Query: 70 IKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL 129
I +S +V+ P EPLLRDNP RFVIFPIQY DIW+MYKKAEASFWTAEEVDL
Sbjct: 52 IFQESEAVKVALPQSPRRTDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDL 111
Query: 130 SKVV--------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
SK + + N + + E + + +R Y F+I +
Sbjct: 112 SKDLQHWESLKPDEKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCF-YGFQIAM 170
Query: 164 APGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAF 216
Y + I K IET+PCVK+KADWA+RWI D+ +++GERV+AF
Sbjct: 171 ENIHSEMYSLLIDTYIKDPKEREYLFNAIETLPCVKRKADWAMRWIGDKHATYGERVVAF 230
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 231 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 270
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L DEKYFISH+LAFFAASDGIVNENLVERF+QE+Q+TEARCFYGF
Sbjct: 107 EEVDLSKDLQHWESLKPDEKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 167 QIAMENIHSEMYSLLIDTYIKDPKER 192
>gi|397531937|gb|AFO54478.1| ribonucleotide reductase small subunit R2i [Carassius carassius]
Length = 385
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 128/203 (63%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLL++NP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 63 VEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYF 122
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + T E + + +R Y F+I + Y + I
Sbjct: 123 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIK 181
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 182 DPKEREFLFNAIETMPCVKKKADWALNWIGDKNAQYGERVVAFAAVEGIFFSGSFASIFW 241
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 242 LKKRGLMPGLTFSNELISRDEGL 264
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 101 EEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 160
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 161 QIAMENIHSEMYSLLIDTYIKDPKER 186
>gi|347311305|gb|AEO79843.1| reductase M2 polypeptide variant 3c [Danio rerio]
Length = 357
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 128/203 (63%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLL++NP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 35 VEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYF 94
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + T E + + +R Y F+I + Y + I
Sbjct: 95 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIK 153
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 154 DSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGIFFSGSFASIFW 213
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 214 LKKRGLMPGLTFSNELISRDEGL 236
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 73 EEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 132
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 133 QIAMENIHSEMYSLLIDTYIKDSKER 158
>gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis]
gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis]
Length = 384
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 145/248 (58%), Gaps = 43/248 (17%)
Query: 51 NTLKDLTNNLQQSKLSDSPIKDKSTLKQVS---------APVQENVETEPLLRDNPRRFV 101
N LK +T + ++S + K+++T++ VS A + N E EPLLR+NP RFV
Sbjct: 17 NALKKVTTDNEKSATITTSYKEENTVQMVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFV 76
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------VVVTNFEIRALKTGEEKA 149
I PIQY +IW+MYKKAEASFWTAEEVDLSK + + + +
Sbjct: 77 ILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAKLNDDERMFVSHVLAFFAASDGIV 136
Query: 150 SHSRNEPYLFRIKLAPGGICRYKVK---------------------KGGKITGGKTIETM 188
+ + E + +++ P C Y + K K+ IETM
Sbjct: 137 NENLVECFCQEVQI-PEARCFYGFQIAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETM 195
Query: 189 PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 248
PCV KKA WAL WI + +SFGER+IAFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNE
Sbjct: 196 PCVMKKAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNE 255
Query: 249 LISRDEDL 256
LISRDE L
Sbjct: 256 LISRDEGL 263
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D + KL DE+ F+SHVLAFFAASDGIVNENLVE F QEVQI EARCFYGF
Sbjct: 100 EEVDLSKDSHDFAKLNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGF 159
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLI++ IKD+ E+
Sbjct: 160 QIAIENIHSEMYSLLIESLIKDKAEK 185
>gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
M2 (Ribonucleotide reductase small subunit)
(Ribonucleotide reductase small chain) [Ciona
intestinalis]
Length = 393
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 142/244 (58%), Gaps = 38/244 (15%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQY 107
L Q T K + +Q ++ S+ K + + + EPLL++NPRRFVIFPIQY
Sbjct: 32 LAQKTSKRILGEIQNTRSSNQTTATKKSKENKDKKLALAKNEEPLLKENPRRFVIFPIQY 91
Query: 108 QDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK-ASHSR----------NEP 156
DIW+MYKKAEASFWT EEVDLSK +V ALK E K SH NE
Sbjct: 92 HDIWQMYKKAEASFWTVEEVDLSKDMV---HWEALKPNERKFISHVLAFFAASDGIVNEN 148
Query: 157 -----------------YLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVK 192
Y F+I + Y + I IET+PCV+
Sbjct: 149 LVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYIRDTHEREFLFNAIETLPCVR 208
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
KKA+WAL+WI+D S++ ER+IAFASVEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISR
Sbjct: 209 KKAEWALKWISDSESTYAERIIAFASVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISR 268
Query: 253 DEDL 256
DE L
Sbjct: 269 DEGL 272
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L +E+ FISHVLAFFAASDGIVNENLVERF QEVQITEAR FYGF
Sbjct: 109 EEVDLSKDMVHWEALKPNERKFISHVLAFFAASDGIVNENLVERFAQEVQITEARFFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLI+TYI+D ER
Sbjct: 169 QIAIENIHSEMYSLLINTYIRDTHER 194
>gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi]
gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi]
Length = 393
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 136/216 (62%), Gaps = 36/216 (16%)
Query: 74 STLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+ +++V+AP ++E PLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 60 TIMEKVAAPFDPSIE--PLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDM 117
Query: 134 --------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG 167
+ N + + E + + +R Y F+I +
Sbjct: 118 TDWVRLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENVH 176
Query: 168 ICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVE 220
Y V I IETMP VK+KADWAL WI+ +A++FGER+IAFA+VE
Sbjct: 177 SEMYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISSKAANFGERIIAFAAVE 236
Query: 221 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W +LT +E++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 109 EEVDLSKDMTDWVRLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPHQR 194
>gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis]
gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis]
Length = 341
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 133/222 (59%), Gaps = 38/222 (17%)
Query: 70 IKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL 129
+ D++ LK+ A + N E EPLLR+NP RFVI PIQY +IW+MYKKAEASFWTAEEVDL
Sbjct: 2 VSDRTPLKKSRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDL 61
Query: 130 SKVVVTNFEIRALKTGEEK-ASH------------SRNEPYLFRIKLA-PGGICRYKVK- 174
SK + + L E SH + N F ++ P C Y +
Sbjct: 62 SK---DSHDFAKLNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQI 118
Query: 175 --------------------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVI 214
K K+ IETMPCV KKA WAL WI + +SFGER+I
Sbjct: 119 AIENIHSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWINPQRASFGERII 178
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 179 AFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 220
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D + KL DE+ F+SHVLAFFAASDGIVNENLVE F+QEVQI EARCFYGF
Sbjct: 57 EEVDLSKDSHDFAKLNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGF 116
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLI++ IKD+ E+
Sbjct: 117 QIAIENIHSEMYSLLIESLIKDKAEK 142
>gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex
quinquefasciatus]
gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex
quinquefasciatus]
Length = 391
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 136/218 (62%), Gaps = 40/218 (18%)
Query: 74 STLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+ LK AP ++E PLL+DNPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 58 AVLKAGQAPFDPSIE--PLLKDNPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDL 115
Query: 134 VTNFEIRALKTGEEK-ASHSR----------NEP-----------------YLFRIKLAP 165
+ LK+GE+ SH NE Y F+I +
Sbjct: 116 G---DWEKLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMEN 172
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IET+PCVKKKADWA+ WI+ + ++FGERV+AFA+
Sbjct: 173 VHSEMYSLLIDTYIRDPKEREYLFNAIETLPCVKKKADWAMNWISSKHANFGERVVAFAA 232
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 233 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 270
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W KL EK+FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 107 EEVDLSKDLGDWEKLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 167 QIAMENVHSEMYSLLIDTYIRDPKER 192
>gi|410928203|ref|XP_003977490.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Takifugu rubripes]
Length = 388
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 141/230 (61%), Gaps = 44/230 (19%)
Query: 60 LQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEA 119
L +S+ P+K ++ K+V EPLL++NPRRFVIFPI+YQDIW+MYKKAEA
Sbjct: 49 LADPAVSERPLKRRTGEKEV----------EPLLKENPRRFVIFPIKYQDIWQMYKKAEA 98
Query: 120 SFWTAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSR 153
SFWTAEEVDLSK + + N + T E + + +R
Sbjct: 99 SFWTAEEVDLSKDLQHWESLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEAR 158
Query: 154 NEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEA 206
Y F+I + Y + I IET+PCVK+KADWAL WI +++
Sbjct: 159 C-FYGFQIAMENIHSEMYSLLIDTYIKDPSEREYLFNAIETLPCVKRKADWALNWIGNKS 217
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 218 AAYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 267
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 104 EEVDLSKDLQHWESLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 163
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD ER
Sbjct: 164 QIAMENIHSEMYSLLIDTYIKDPSER 189
>gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST]
gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST]
Length = 400
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 133/213 (62%), Gaps = 36/213 (16%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--- 133
K SAP ++E PLLRDNPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 70 KHESAPFDPSIE--PLLRDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDW 127
Query: 134 -----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ N + + E + + +R Y F+I +
Sbjct: 128 ETLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQIAMENVHSEM 186
Query: 171 YKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + I K IET+PCVK+KADWAL WI+ + ++FGERV+AFA+VEGIF
Sbjct: 187 YSLLIDTYIRDSKEREFLFNAIETLPCVKRKADWALNWISSKKANFGERVVAFAAVEGIF 246
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 247 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 279
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ W L E++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 116 EEVDLSKDMKDWETLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 175
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 176 QIAMENVHSEMYSLLIDTYIRDSKER 201
>gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2
[Taeniopygia guttata]
Length = 390
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 129/202 (63%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 69 EEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWESLKPEEKYFI 128
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + + +R Y F+I + Y + I
Sbjct: 129 SHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENIHSEMYSLLIDTYIKD 187
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IET+PCVKKKADWA+ WI D+ +++GERV+AFA+VEGIFFSGSFASIFWL
Sbjct: 188 SKEREFLFNAIETLPCVKKKADWAMCWIGDKKATYGERVVAFAAVEGIFFSGSFASIFWL 247
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 248 KKRGLMPGLTFSNELISRDEGL 269
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 106 EEVDLSKDLQHWESLKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSKER 191
>gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica]
gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica CLIB122]
Length = 403
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 136/214 (63%), Gaps = 35/214 (16%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--- 133
K V ++E+ + EPLL++N RRFV+FPIQY +IW+MYKKAEASFWTAEE+DL K +
Sbjct: 64 KSVRRRLRESEKDEPLLKENHRRFVLFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDW 123
Query: 134 ------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
+ N + +GE +A ++ Y F+I +
Sbjct: 124 ENRLNNDERFFISHVLAFFAASDGIVNENLVERFSGEVQAPEAKC-FYGFQIMMENIHSE 182
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K IET+PC+KKKADWAL+WI+DE S+FGER+IAFA+VEGI
Sbjct: 183 TYSLLIDTYIKDPKERTYLFNAIETIPCIKKKADWALKWISDEESTFGERLIAFAAVEGI 242
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 243 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ W N+L DE++FISHVLAFFAASDGIVNENLVERF+ EVQ EA+CFYG
Sbjct: 112 EEIDLGKDMGDWENRLNNDERFFISHVLAFFAASDGIVNENLVERFSGEVQAPEAKCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD +ER
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKDPKER 198
>gi|382546360|ref|NP_001244266.1| ribonucleoside diphosphate reductase small subunit [Bombyx mori]
gi|380503816|dbj|BAL72672.1| ribonucleoside diphosphate reductase small subunit [Bombyx mori]
Length = 375
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/202 (52%), Positives = 129/202 (63%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 54 QKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFI 113
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + + +R Y F+I + Y + I
Sbjct: 114 KHVLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQIAMENVHSEMYSLLIDTYIRD 172
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K +ET+PCVKKKADWAL+WIA + ++FGER++AFA+VEGIFFSGSFASIFWL
Sbjct: 173 PKERDFLFNAVETLPCVKKKADWALQWIASKTATFGERIVAFAAVEGIFFSGSFASIFWL 232
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 233 KKRGLMPGLTFSNELISRDEGL 254
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DLS W L E++FI HVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 91 EEVDLSKDLSDWETLKDSERHFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 150
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 151 QIAMENVHSEMYSLLIDTYIRDPKER 176
>gi|410928205|ref|XP_003977491.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Takifugu rubripes]
Length = 386
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 134/213 (62%), Gaps = 37/213 (17%)
Query: 80 SAPVQENV---ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--- 133
S PV+ E EPLL++NPRRFVIFPI+YQDIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 54 SKPVKRRTGEKEVEPLLKENPRRFVIFPIKYQDIWQMYKKAEASFWTAEEVDLSKDLQHW 113
Query: 134 -----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ N + T E + + +R Y F+I +
Sbjct: 114 ESLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEM 172
Query: 171 YKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + I IET+PCVK+KADWAL WI ++++++GERV+AFA+VEGIF
Sbjct: 173 YSLLIDTYIKDPSEREYLFNAIETLPCVKRKADWALNWIGNKSAAYGERVVAFAAVEGIF 232
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 233 FSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 265
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLQHWESLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDPSER 187
>gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis]
gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis]
Length = 393
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 138/218 (63%), Gaps = 36/218 (16%)
Query: 72 DKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
++S + +++AP ++E PLL++NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK
Sbjct: 58 EQSIMDKIAAPFDPSLE--PLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSK 115
Query: 132 VV--------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAP 165
+ + N + + E + + +R Y F+I +
Sbjct: 116 DLTDWARLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMEN 174
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y V I + +ETMP VK+KADWAL WI+ +A++FGER+IAFA+
Sbjct: 175 VHSEMYSVLIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWISSKAANFGERIIAFAA 234
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 235 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 78/86 (90%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W +LT +E++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 109 EEVDLSKDLTDWARLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +ER
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPQER 194
>gi|389613574|dbj|BAM20123.1| ribonucleoside diphosphate reductase small subunit [Papilio xuthus]
Length = 284
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 129/204 (63%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N E EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 53 NPELEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWESLKDCERH 112
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + +R Y F+I + Y + I
Sbjct: 113 FIKHVLAFFAASDGIVNENLVERFSQEVQIGEARF-FYGFQIAMENVHSEMYSLLIDTYI 171
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K +ET+PCVKKKADWAL+WIA + ++FGER++AFA+VEGIFFSGSFASIF
Sbjct: 172 RDPKERDFLFNAVETLPCVKKKADWALQWIASKTANFGERIVAFAAVEGIFFSGSFASIF 231
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 232 WLKKRGLMPGLTFSNELISRDEGL 255
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DLS W L E++FI HVLAFFAASDGIVNENLVERF+QEVQI EAR FYGF
Sbjct: 92 EEVDLSKDLSDWESLKDCERHFIKHVLAFFAASDGIVNENLVERFSQEVQIGEARFFYGF 151
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 152 QIAMENVHSEMYSLLIDTYIRDPKER 177
>gi|449284077|gb|EMC90658.1| Ribonucleoside-diphosphate reductase subunit M2 B, partial [Columba
livia]
Length = 333
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 128/202 (63%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLLR NPRRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 12 DEEPLLRKNPRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFI 71
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + A + E + +R Y F+I + Y + I
Sbjct: 72 SHILAFFAASDGIVNENLVARFSQEVQIPEARCF-YGFQILIENVHSEMYSLLIDTYIKD 130
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ IETMPCVKKKADWAL+WI D S+FGERV+AFA+VEGIFFSGSFA+IFWL
Sbjct: 131 PEKRDFLFNAIETMPCVKKKADWALKWIEDRESTFGERVVAFAAVEGIFFSGSFAAIFWL 190
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 191 KKRGLMPGLTFSNELISRDEGL 212
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLV RF+QEVQI EARCFYGF
Sbjct: 49 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVARFSQEVQIPEARCFYGF 108
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYIKD E+R
Sbjct: 109 QILIENVHSEMYSLLIDTYIKDPEKR 134
>gi|440903111|gb|ELR53814.1| Ribonucleoside-diphosphate reductase subunit M2 B, partial [Bos
grunniens mutus]
Length = 336
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 118/218 (54%), Positives = 134/218 (61%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
K++S+ EN + EPLLR + RRFVIFPIQY DIWKMYKKA+ASFWTAEEVDLSK +
Sbjct: 1 KRLSSDTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDL 60
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+GE E+ S P Y F+I +
Sbjct: 61 P---HWNKLKSGEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 117
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWIAD S+FGERV+AFA+
Sbjct: 118 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAA 177
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 178 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 215
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 94/130 (72%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWNKL
Sbjct: 10 NEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKA--QASFWTAEEVDLSKDLPHWNKLK 67
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 68 SGEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 127
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 128 DTYIRDPKKR 137
>gi|348566413|ref|XP_003468996.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Cavia porcellus]
Length = 388
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 131/204 (64%), Gaps = 35/204 (17%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 66 SVEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPEERY 125
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 126 FISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENIHSEMYSLLIDTYI 184
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ IETMPCVKK +DWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIF
Sbjct: 185 KDSREREFLFNAIETMPCVKK-SDWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 243
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 244 WLKKRGLMPGLTFSNELISRDEGL 267
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 76/88 (86%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDSRER 190
>gi|388581984|gb|EIM22290.1| ribonucleoside-diphosphate reductase small chain [Wallemia sebi CBS
633.66]
Length = 410
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 146/235 (62%), Gaps = 41/235 (17%)
Query: 57 TNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKK 116
NNL S + ++ K + V+ E EPLL++NPRRFV+FPIQY +IW+MYKK
Sbjct: 58 ANNLDLSGYTAEELRGKYFVGDVNC----KEEDEPLLKENPRRFVLFPIQYTEIWQMYKK 113
Query: 117 AEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSR----------NEPYLFR----IK 162
AEASFWTAEE+DLSK + T+++ + K + SH NE L R ++
Sbjct: 114 AEASFWTAEEMDLSKDI-TDWQNKINKDEKHFISHVLAFFAASDGIVNENLLERFSSEVQ 172
Query: 163 LAPGGICRYKVKKGGKITGGKT---------------------IETMPCVKKKADWALRW 201
LA C Y + + +T IET+PC+K+KADWA++W
Sbjct: 173 LAEAR-CFYGFQIMMENIHSETYSLLIDTYIPEAEQRDYLFNAIETIPCIKRKADWAVKW 231
Query: 202 IADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
I DE +SFGER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 232 INDEKASFGERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 286
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D++ W NK+ +DEK+FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 122 EEMDLSKDITDWQNKINKDEKHFISHVLAFFAASDGIVNENLLERFSSEVQLAEARCFYG 181
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + E+R
Sbjct: 182 FQIMMENIHSETYSLLIDTYIPEAEQR 208
>gi|357628103|gb|EHJ77546.1| ribonucleoside-diphosphate reductase small chain [Danaus plexippus]
Length = 374
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/202 (52%), Positives = 129/202 (63%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 53 QLEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWESLKDCERHFI 112
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + + +R Y F+I + Y + I
Sbjct: 113 KHVLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQIAMENVHSEMYSLLIDTYIRD 171
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IET+PCVKKKADWAL+WIA + ++FGER++AFA+VEGIFFSGSFASIFW+
Sbjct: 172 PKERDFLFNAIETLPCVKKKADWALQWIASKTATFGERIVAFAAVEGIFFSGSFASIFWM 231
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 232 KKRGLMPGLTFSNELISRDEGL 253
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DLS W L E++FI HVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 90 EEVDLSKDLSDWESLKDCERHFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 149
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 150 QIAMENVHSEMYSLLIDTYIRDPKER 175
>gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius]
Length = 246
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 126/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 1 EPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYFISH 60
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + T E + + +R Y F+I + Y + I K
Sbjct: 61 VLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPK 119
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGIFFSGSFASIFWLKK
Sbjct: 120 ERDFLFNAIETMPCVKKKADWALNWIGDKNAQYGERVVAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFY
Sbjct: 34 TAEEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFY 93
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 94 GFQIAMENIHSEMYSLLIDTYIKDPKER 121
>gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis]
Length = 390
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 108/202 (53%), Positives = 129/202 (63%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 69 EEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWESLKPEEKYFI 128
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + + +R Y F+I + Y + I
Sbjct: 129 SHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENIHSEMYSLLIDTYIKD 187
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ IET+PCVKKKADWA+ WI D+ +++GERV+AFA+VEGIFFSGSFASIFWL
Sbjct: 188 SQEREFLFNAIETLPCVKKKADWAMCWIGDKKATYGERVVAFAAVEGIFFSGSFASIFWL 247
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 248 KKRGLMPGLTFSNELISRDEGL 269
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 106 EEVDLSKDLQHWESLKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSQER 191
>gi|348513219|ref|XP_003444140.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Oreochromis niloticus]
Length = 349
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 131/206 (63%), Gaps = 35/206 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EPLLR+NPRRFVIFPIQY+DIWKMYK+A+ASFWT EEVDLSK +
Sbjct: 28 EEEPLLRENPRRFVIFPIQYRDIWKMYKQAQASFWTVEEVDLSKDLAHWDRLKAEEKHFI 87
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + +R+ Y F+I + Y + I
Sbjct: 88 SHVLAFFAASDGIVNENLVQRFSQEVQVPEARS-FYSFQILIETVHSEMYSMLINTYIRD 146
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K I+TMPCVK+KADWAL+WI D S+FGER++AFA+VEGIFFSGSFA+I+WL
Sbjct: 147 LKERDYLFNAIQTMPCVKRKADWALQWINDSKSTFGERIVAFAAVEGIFFSGSFAAIYWL 206
Query: 235 KKRGLMPGLTFSNELISRDEDLSHWN 260
KKRGLMPGLT+SNELISRDE L H N
Sbjct: 207 KKRGLMPGLTYSNELISRDEGL-HCN 231
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+HW++L +EK+FISHVLAFFAASDGIVNENLV+RF+QEVQ+ EAR FY F
Sbjct: 65 EEVDLSKDLAHWDRLKAEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQVPEARSFYSF 124
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +E VHSEMYS+LI+TYI+D +ER
Sbjct: 125 QILIETVHSEMYSMLINTYIRDLKER 150
>gi|449495040|ref|XP_002198998.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
[Taeniopygia guttata]
Length = 346
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 133/215 (61%), Gaps = 37/215 (17%)
Query: 78 QVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV- 133
Q S+ EN ++ EPLLR N RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 12 QSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 71
Query: 134 -------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGI 168
+ N + A + E + +R Y F+I +
Sbjct: 72 HWNKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARC-FYGFQILIENVHS 130
Query: 169 CRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEG 221
Y + I K IETMPCVKKKADWAL+WI D S+FGERV+AFA+VEG
Sbjct: 131 EMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWIEDRESTFGERVVAFAAVEG 190
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
IFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 191 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 225
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISHVLAFFAASDGIVNENLV RF+QEVQI EARCFYGF
Sbjct: 62 EEVDLSKDLPHWNKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGF 121
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYIKD ++R
Sbjct: 122 QILIENVHSEMYSLLIDTYIKDPKKR 147
>gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
Length = 387
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/248 (47%), Positives = 147/248 (59%), Gaps = 37/248 (14%)
Query: 43 NINLFLPQNTLKDL-TNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFV 101
NI+L +NT L T + S+ + D S +K + V++ EPLL++NPRRFV
Sbjct: 22 NISLVDKENTPPSLNTTRILASRTARKIFADDSEVKPQN--VKKFNTEEPLLKENPRRFV 79
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VT 135
IFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 80 IFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHWDSLKDEERYFISHVLAFFAASDGIV 139
Query: 136 NFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETM 188
N + T E + + +R Y F+I + Y + I K IET+
Sbjct: 140 NENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPKERDYLFNAIETL 198
Query: 189 PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 248
PCVK+KADWAL WI ++ + FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNE
Sbjct: 199 PCVKRKADWALNWIGNKNAGFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNE 258
Query: 249 LISRDEDL 256
LISRDE L
Sbjct: 259 LISRDEGL 266
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 103 EEVDLSKDTQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 162
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 QIAMENIHSEMYSLLIDTYIKDPKER 188
>gi|425772246|gb|EKV10657.1| Ribonucleotide reductase small subunit RnrA, putative [Penicillium
digitatum Pd1]
gi|425777425|gb|EKV15599.1| Ribonucleotide reductase small subunit RnrA, putative [Penicillium
digitatum PHI26]
Length = 402
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 151/263 (57%), Gaps = 61/263 (23%)
Query: 54 KDLTNNLQQSKLSDSPIKD-----------KSTLKQVSAPVQENVE-------------- 88
K ++L+ K+SDSP+K ++LK V+ P++++ E
Sbjct: 9 KQAASSLENLKMSDSPVKKLDFQLAGKENAPASLKAVNTPIEKSTEKSHASKALTIKEME 68
Query: 89 -TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 ASEPLLQENPHRFVMFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWHNRLNDDERYF 128
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + +GE + +R Y F+I + Y + I
Sbjct: 129 ISHVLAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIN 187
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K I+T+PC+ KKA+WALRWI+D S+F R++AFA+VEGIFFSGSFASIFW
Sbjct: 188 EPKQRTYLFDAIDTIPCIAKKANWALRWISDHESTFASRLVAFAAVEGIFFSGSFASIFW 247
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 248 LKKRGLMPGLTFSNELISRDEGL 270
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W N+L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 106 EEIDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 165
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 166 FQIMMENIHSETYSLLIDTYINEPKQR 192
>gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis]
gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis]
Length = 394
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 135/217 (62%), Gaps = 36/217 (16%)
Query: 73 KSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKV 132
++ +++++A VE PLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK
Sbjct: 60 QTIMEKIAAQFDPTVE--PLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKD 117
Query: 133 V--------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG 166
+ + N + + E + + +R Y F+I +
Sbjct: 118 LTDWARLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENV 176
Query: 167 GICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASV 219
Y V I IETMP VK+KADWAL WI+ +A++FGER+IAFA+V
Sbjct: 177 HSEMYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISSKAANFGERIIAFAAV 236
Query: 220 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W +LT +E++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 110 EEVDLSKDLTDWARLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 169
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 170 QIAMENVHSEMYSVLIDTYIRDPHQR 195
>gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger
CBS 513.88]
gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger]
gi|350639699|gb|EHA28053.1| hypothetical protein ASPNIDRAFT_56635 [Aspergillus niger ATCC 1015]
Length = 396
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 148/260 (56%), Gaps = 58/260 (22%)
Query: 54 KDLTNNLQQSKLSDSPIK------------------DKSTLKQVSAP-----VQENVETE 90
K ++L+ K+SDSP+K DK K V AP ++E +E
Sbjct: 9 KQAASSLENLKMSDSPVKKLNFGGKENAPAAVDVTADKPVEKPVEAPKVAPGIKEMEASE 68
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------------- 133
PLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 PLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWHNRLNDDERYFISH 128
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + +GE + +R Y F+I + Y + I K
Sbjct: 129 VLAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQIMMENIHSETYSLLIDTYIKEPK 187
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I+T+PC+ KKADWA++WI D S+F +R++AFA+VEGIFFSGSFASIFWLKK
Sbjct: 188 QRTYLFDAIDTIPCIAKKADWAIKWIQDRESTFAQRLVAFAAVEGIFFSGSFASIFWLKK 247
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 248 RGLMPGLTFSNELISRDEGL 267
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W N+L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 103 EEIDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 162
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 163 FQIMMENIHSETYSLLIDTYIKEPKQR 189
>gi|432951682|ref|XP_004084883.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Oryzias latipes]
Length = 265
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 129/202 (63%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EPLL++NPRRFVIFP+QY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 17 EEEPLLKENPRRFVIFPVQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWETLKDDERFFI 76
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + T E + + +R Y F+I + Y + I
Sbjct: 77 SHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIKD 135
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IET+PCVK+KADWAL WI ++ +++GERV+AFA+VEGIFFSGSFA+IFWL
Sbjct: 136 PKEREYLFNAIETLPCVKRKADWALNWIGNKHAAYGERVVAFAAVEGIFFSGSFAAIFWL 195
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 196 KKRGLMPGLTFSNELISRDEGL 217
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L DE++FISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 54 EEVDLSKDLQHWETLKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 113
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 114 QIAMENIHSEMYSLLIDTYIKDPKER 139
>gi|342870144|gb|EGU73441.1| hypothetical protein FOXB_16079 [Fusarium oxysporum Fo5176]
Length = 409
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 153/263 (58%), Gaps = 45/263 (17%)
Query: 28 VNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENV 87
V LDFG+ EP +N L LK +K+ + P K + T V+ ++
Sbjct: 24 VKKLDFGAANKENEP-LNKSLDTTDLK--------TKIVEEP-KKEETKAAVAPGIKSEE 73
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 74 ADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLTADEQFF 133
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKV 173
+ N + +GE + +R Y F+I + I Y
Sbjct: 134 VSHILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIK 192
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ + IET+PC++KKADWA+RWI D+ SSF +R++AFA+VEGIFFSG+FASIFW
Sbjct: 193 EPAQRTYLFNAIETIPCIRKKADWAIRWIQDKDSSFAQRLVAFAAVEGIFFSGAFASIFW 252
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 253 LKKRGLMPGLTFSNELISRDEGL 275
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +LT DE++F+SH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 111 EEIDLSKDLHDWNNRLTADEQFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 171 FQIMMENIHSETYSLLIDTYIKEPAQR 197
>gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana)
tropicalis]
gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis]
Length = 346
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 126/201 (62%), Gaps = 32/201 (15%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV---------TNF- 137
E EP LR NP+RFVIFPI Y DIWKMYKKA+ASFWTAEEVDLSK +V NF
Sbjct: 25 EEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDLVHWEKLKPEERNFI 84
Query: 138 -EIRALKTGE---------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGG 182
I A E+ S P Y F+I + Y + I
Sbjct: 85 SHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIETYIKDP 144
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IETMPCV+KKA WALRWI+D +SFGERV+AFA+VEGIFFSGSFA+IFWLK
Sbjct: 145 RRREFLFNAIETMPCVRKKAQWALRWISDRKASFGERVVAFAAVEGIFFSGSFAAIFWLK 204
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 205 KRGLMPGLTFSNELISRDEGL 225
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW KL +E+ FISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 62 EEVDLSKDLVHWEKLKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 121
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLI+TYIKD R
Sbjct: 122 QILIENVHSEMYSLLIETYIKDPRRR 147
>gi|395818124|ref|XP_003782487.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
[Otolemur garnettii]
Length = 351
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/202 (55%), Positives = 126/202 (62%), Gaps = 38/202 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE--- 146
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + LK+ E
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP---HWNKLKSDEKCF 88
Query: 147 --------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITG 181
E+ S P Y F+I + Y + I
Sbjct: 89 ISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRD 148
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IETMPCVKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWL
Sbjct: 149 PKEREFLFNAIETMPCVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWL 208
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 209 KKRGLMPGLTFSNELISRDEGL 230
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEK FISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKSDEKCFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D +ER
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKER 152
>gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti]
gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti]
gi|108873070|gb|EAT37295.1| AAEL010691-PA [Aedes aegypti]
Length = 397
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 128/202 (63%), Gaps = 38/202 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK- 148
EPLL++NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK + + LK+GE+
Sbjct: 78 EPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLA---DWEKLKSGEKHF 134
Query: 149 ASHSR----------NEP-----------------YLFRIKLAPGGICRYKVKKGGKITG 181
SH NE Y F+I + Y + I
Sbjct: 135 ISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRD 194
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K I+ +PCVKKKADWAL WI+ + ++FGERV+AFA+VEGIFFSGSFASIFWL
Sbjct: 195 SKEREYLFNAIDNLPCVKKKADWALNWISSKKANFGERVVAFAAVEGIFFSGSFASIFWL 254
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 255 KKRGLMPGLTFSNELISRDEGL 276
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W KL EK+FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 113 EEVDLSKDLADWEKLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 172
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 173 QIAMENVHSEMYSLLIDTYIRDSKER 198
>gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Meleagris gallopavo]
Length = 353
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 139/233 (59%), Gaps = 37/233 (15%)
Query: 60 LQQSKLSDSPIKDKSTLKQVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKK 116
++ LS D + + S+ EN + EPLLR NPRRFVIFPIQ+ DIWKMYK+
Sbjct: 1 MEGEGLSTPGKGDAAACGEWSSSPSENGLKLHEEPLLRKNPRRFVIFPIQHPDIWKMYKQ 60
Query: 117 AEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGEEKAS 150
A+ASFWTAEEVDLSK + + N + A + E +
Sbjct: 61 AQASFWTAEEVDLSKDLPHWNKLKPDEKYFISHILAFFAASDGIVNENLVARFSQEVQIP 120
Query: 151 HSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIA 203
+R Y F+I + Y + I + IETMPCVKKKADWAL+WI
Sbjct: 121 EARCF-YGFQILIENVHSEMYSLLIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWIE 179
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
D S+FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 DRHSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 232
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLV RF+QEVQI EARCFYGF
Sbjct: 69 EEVDLSKDLPHWNKLKPDEKYFISHILAFFAASDGIVNENLVARFSQEVQIPEARCFYGF 128
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYIKD E+R
Sbjct: 129 QILIENVHSEMYSLLIDTYIKDPEKR 154
>gi|118087248|ref|XP_418364.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
[Gallus gallus]
Length = 353
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 127/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLLR NPRRFVIFPIQ+ DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 34 EPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 93
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + A + E + +R Y F+I + Y + I +
Sbjct: 94 VLAFFAASDGIVNENLVARFSQEVQIPEARCF-YGFQILIENVHSEMYSLLIDTYIKDPE 152
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IETMPCVKKKADWAL+WI D S+FGERV+AFA+VEGIFFSGSFA+IFWLKK
Sbjct: 153 KRDFLFNAIETMPCVKKKADWALKWIEDRESTFGERVVAFAAVEGIFFSGSFAAIFWLKK 212
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 213 RGLMPGLTFSNELISRDEGL 232
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISHVLAFFAASDGIVNENLV RF+QEVQI EARCFYGF
Sbjct: 69 EEVDLSKDLPHWNKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGF 128
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYIKD E+R
Sbjct: 129 QILIENVHSEMYSLLIDTYIKDPEKR 154
>gi|348518321|ref|XP_003446680.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Oreochromis niloticus]
Length = 385
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 130/204 (63%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EPLL++NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 64 EEEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLQHWEALKDEERYFI 123
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+V N R ++ E + + +R Y F+I + Y + I
Sbjct: 124 SHVLAFFAASDGIVNENLVERFMQ--EVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYI 180
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IET+PCVKKKADWAL WI ++ +++GERV+AFA+VEGIFFSGSFA+IF
Sbjct: 181 KDPKEREYLFNAIETLPCVKKKADWALNWIGNKNATYGERVVAFAAVEGIFFSGSFAAIF 240
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 241 WLKKRGLMPGLTFSNELISRDEGL 264
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFISHVLAFFAASDGIVNENLVERF QEVQ+TEARCFYGF
Sbjct: 101 EEVDLSKDLQHWEALKDEERYFISHVLAFFAASDGIVNENLVERFMQEVQVTEARCFYGF 160
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 161 QIAMENIHSEMYSLLIDTYIKDPKER 186
>gi|340726313|ref|XP_003401504.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Bombus terrestris]
Length = 384
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 149/258 (57%), Gaps = 48/258 (18%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPI-------KDKSTLKQVSAPVQE----NVETEP 91
NI L + +LKD N KL SPI K+ S +K V + + N E EP
Sbjct: 10 NIRKHLEKVSLKD---NTSPKKLCISPIISQENGIKNGSKVKDVKMTILKENGFNPELEP 66
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------ 133
LL++NPRRFV+FPIQ+ DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 67 LLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVDLSKDIFDWNHLNSDEKHFISHVL 126
Query: 134 --------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-- 183
+ N + + E + + +R Y F++ + Y + IT K
Sbjct: 127 AFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQVAIENVHSEMYSMLIDTYITDTKER 185
Query: 184 -----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRG 238
IE +PCV KKA+WAL WI E+++F ERV+AFA+VEGIFFSGSFA+IFWLKKRG
Sbjct: 186 DFLFNAIENLPCVAKKANWALNWINHESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRG 245
Query: 239 LMPGLTFSNELISRDEDL 256
LMPGLTFSNELISRDE L
Sbjct: 246 LMPGLTFSNELISRDEGL 263
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN L DEK+FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 100 EEVDLSKDIFDWNHLNSDEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 159
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+ENVHSEMYS+LIDTYI D +ER
Sbjct: 160 QVAIENVHSEMYSMLIDTYITDTKER 185
>gi|348518323|ref|XP_003446681.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Oreochromis niloticus]
Length = 391
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 130/204 (63%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EPLL++NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 70 EEEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLQHWEALKDEERYFI 129
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+V N R ++ E + + +R Y F+I + Y + I
Sbjct: 130 SHVLAFFAASDGIVNENLVERFMQ--EVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYI 186
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IET+PCVKKKADWAL WI ++ +++GERV+AFA+VEGIFFSGSFA+IF
Sbjct: 187 KDPKEREYLFNAIETLPCVKKKADWALNWIGNKNATYGERVVAFAAVEGIFFSGSFAAIF 246
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 247 WLKKRGLMPGLTFSNELISRDEGL 270
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFISHVLAFFAASDGIVNENLVERF QEVQ+TEARCFYGF
Sbjct: 107 EEVDLSKDLQHWEALKDEERYFISHVLAFFAASDGIVNENLVERFMQEVQVTEARCFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 167 QIAMENIHSEMYSLLIDTYIKDPKER 192
>gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta]
gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta]
Length = 393
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 126/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 74 EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISH 133
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E + + +R Y F+I + Y V I
Sbjct: 134 VLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQIAMENVHSEMYSVLIDTYIRDPN 192
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IETMP VK+KADWAL WI+ ++++FGER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 193 QREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKK 252
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 253 RGLMPGLTFSNELISRDEGL 272
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W++L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 109 EEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPNQR 194
>gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila
melanogaster]
gi|12644287|sp|P48592.2|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small subunit
gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila
melanogaster]
gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster]
gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct]
gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct]
Length = 393
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 144/253 (56%), Gaps = 47/253 (18%)
Query: 50 QNTLKDLTNNLQQSKLSDSP----IKDKSTLKQVSAPVQENVET---------EPLLRDN 96
+ L D TNN+++ + K+ ST+ + +E EPLLR+N
Sbjct: 21 KKILTDSTNNVRKMSIGHEANGQLAKESSTVNGIGKSANSLMEKSVTPFDPSLEPLLREN 80
Query: 97 PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------------------- 133
PRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 81 PRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAA 140
Query: 134 ---VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-------K 183
+ N + + E + + +R Y F+I + Y V I
Sbjct: 141 SDGIVNENLVERFSQEVQITEARC-FYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFN 199
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VK+KADWAL WI+ ++++FGER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 200 AIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGL 259
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 260 TFSNELISRDEGL 272
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W++L DE++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 109 EEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPHQR 194
>gi|348518329|ref|XP_003446684.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Oreochromis niloticus]
Length = 391
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 130/204 (63%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EPLL++NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 70 EEEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLQHWEALKDEERYFI 129
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+V N R ++ E + + +R Y F+I + Y + I
Sbjct: 130 SHVLAFFAASDGIVNENLVERFMQ--EVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYI 186
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IET+PCVKKKADWAL WI ++ +++GERV+AFA+VEGIFFSGSFA+IF
Sbjct: 187 KDPKEREYLFNAIETLPCVKKKADWALNWIGNKNATYGERVVAFAAVEGIFFSGSFAAIF 246
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 247 WLKKRGLMPGLTFSNELISRDEGL 270
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFISHVLAFFAASDGIVNENLVERF QEVQ+TEARCFYGF
Sbjct: 107 EEVDLSKDLQHWEALKDEERYFISHVLAFFAASDGIVNENLVERFMQEVQVTEARCFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 167 QIAMENIHSEMYSLLIDTYIKDPKER 192
>gi|348518327|ref|XP_003446683.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Oreochromis niloticus]
Length = 385
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 130/204 (63%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EPLL++NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 64 EEEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLQHWEALKDEERYFI 123
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+V N R ++ E + + +R Y F+I + Y + I
Sbjct: 124 SHVLAFFAASDGIVNENLVERFMQ--EVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYI 180
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IET+PCVKKKADWAL WI ++ +++GERV+AFA+VEGIFFSGSFA+IF
Sbjct: 181 KDPKEREYLFNAIETLPCVKKKADWALNWIGNKNATYGERVVAFAAVEGIFFSGSFAAIF 240
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 241 WLKKRGLMPGLTFSNELISRDEGL 264
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFISHVLAFFAASDGIVNENLVERF QEVQ+TEARCFYGF
Sbjct: 101 EEVDLSKDLQHWEALKDEERYFISHVLAFFAASDGIVNENLVERFMQEVQVTEARCFYGF 160
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 161 QIAMENIHSEMYSLLIDTYIKDPKER 186
>gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni]
gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni]
Length = 395
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 127/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 76 EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWARLTDNERHFISH 135
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E + + +R Y F+I + Y + I +
Sbjct: 136 VLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENVHSEMYSILIDTYIRDPQ 194
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
+ETMP VK+KADWAL WI+ +A++FGER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 195 ERDYLFNAVETMPAVKRKADWALSWISSKAANFGERIIAFAAVEGIFFSGSFASIFWLKK 254
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNE+ISRDE L
Sbjct: 255 RGLMPGLTFSNEMISRDEGL 274
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 78/86 (90%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W +LT +E++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 111 EEVDLSKDLTDWARLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 170
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +ER
Sbjct: 171 QIAMENVHSEMYSILIDTYIRDPQER 196
>gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus]
Length = 398
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 126/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 79 EPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLADWEKLKSGEKHFISH 138
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E + + +R Y F+I + Y + I K
Sbjct: 139 VLAFFAASDGIVNVNLVERFSQEVQVTEARC-FYGFQIAMENVHSEMYSLLIDTYIRDSK 197
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I+ +PCVKKKADWAL WI+ + ++FGERV+AFA+VEGIFFSG+FASIFWLKK
Sbjct: 198 EREYLFNAIDNLPCVKKKADWALNWISSKQANFGERVVAFAAVEGIFFSGTFASIFWLKK 257
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 258 RGLMPGLTFSNELISRDEGL 277
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W KL EK+FISHVLAFFAASDGIVN NLVERF+QEVQ+TEARCFYGF
Sbjct: 114 EEVDLSKDLADWEKLKSGEKHFISHVLAFFAASDGIVNVNLVERFSQEVQVTEARCFYGF 173
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 174 QIAMENVHSEMYSLLIDTYIRDSKER 199
>gi|443728153|gb|ELU14627.1| hypothetical protein CAPTEDRAFT_162025 [Capitella teleta]
Length = 321
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 124/198 (62%), Gaps = 34/198 (17%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------ 133
+LRDNPRRFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK V
Sbjct: 1 MLRDNPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDVSHWEQLKPDERHFISHVL 60
Query: 134 --------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG--- 182
+ N + + E + + +R Y F+I + Y + I
Sbjct: 61 AFFAASDGIVNENLVERFSKEVQVTEARC-FYGFQIAIENIHSEMYSLLIDTYIKDMTEK 119
Query: 183 ----KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRG 238
IETMPCVK+KADWALRWI D SS+ ERV+AFA+VEGIFFSGSFA+IFWLKKRG
Sbjct: 120 EYLFNAIETMPCVKEKADWALRWINDSQSSYAERVVAFAAVEGIFFSGSFAAIFWLKKRG 179
Query: 239 LMPGLTFSNELISRDEDL 256
+MPGLTFSNELISRDE L
Sbjct: 180 VMPGLTFSNELISRDEGL 197
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+SHW +L DE++FISHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYGF
Sbjct: 34 EEVDLSKDVSHWEQLKPDERHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGF 93
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTYIKD E+
Sbjct: 94 QIAIENIHSEMYSLLIDTYIKDMTEK 119
>gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia]
gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans]
gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia]
gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans]
Length = 393
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 126/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 74 EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISH 133
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
+ N + + E + + +R Y F+I + Y V I
Sbjct: 134 VLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENVHSEMYSVLIDTYIRDPH 192
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IETMP VK+KADWAL WI+ ++++FGER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 193 QREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKK 252
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 253 RGLMPGLTFSNELISRDEGL 272
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W++L DE++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 109 EEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPHQR 194
>gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba]
gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba]
Length = 393
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 126/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 74 EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISH 133
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
+ N + + E + + +R Y F+I + Y V I
Sbjct: 134 VLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENVHSEMYSVLIDTYIRDPH 192
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IETMP VK+KADWAL WI+ ++++FGER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 193 QREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKK 252
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 253 RGLMPGLTFSNELISRDEGL 272
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W++L DE++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 109 EEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPHQR 194
>gi|367051116|ref|XP_003655937.1| hypothetical protein THITE_2069122 [Thielavia terrestris NRRL 8126]
gi|347003201|gb|AEO69601.1| hypothetical protein THITE_2069122 [Thielavia terrestris NRRL 8126]
Length = 415
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 150/256 (58%), Gaps = 46/256 (17%)
Query: 62 QSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASF 121
+SK S + K ++ V+ ++ EPLL++NP+RFV+FPI+Y +IW+MYKKAEASF
Sbjct: 53 ESKHSTTDKKQEAAKPAVAPTIKPEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASF 112
Query: 122 WTAEEVDLSKVV---------------------------VTNFEIRALKTGEEKASHSRN 154
WTAEE+DLSK + + N + +GE + +R
Sbjct: 113 WTAEEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARC 172
Query: 155 EPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEAS 207
Y F+I + I Y + + I+T+PC++KKADWALRWIAD+ S
Sbjct: 173 -FYGFQIMMENIHSETYSLLIDTYIKEPAQRTHLFNAIDTIPCIRKKADWALRWIADKKS 231
Query: 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL---------SH 258
+F +R++AFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L SH
Sbjct: 232 TFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSH 291
Query: 259 WNKLTRDEKYFISHVL 274
NK R K I ++
Sbjct: 292 LNK--RPSKQVIQDII 305
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 116 EEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 175
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 176 FQIMMENIHSETYSLLIDTYIKEPAQR 202
>gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis]
gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
tropicalis]
Length = 378
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 145/262 (55%), Gaps = 62/262 (23%)
Query: 49 PQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQEN---------------------V 87
P+N L L +N+ SP+K + L + + P N +
Sbjct: 4 PRNALSPLKDNV-------SPMKRMALLDKENTPPGFNSGRTSRGTHKQWVCQSLKDPRI 56
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLLRDNP RFVI PI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 57 QDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWEALKPEERYFI 116
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + + +R Y F+I + Y + I
Sbjct: 117 SYVLAFFAASDGIVNENLVERFSQEVQVTEARCF-YGFQIAMENIHSEMYSLLIDTYIKD 175
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IET+PCVKKKA+WALRWI+D + F ER++AFA+VEGIFFSGSFASIFWL
Sbjct: 176 PKEREFLFNAIETLPCVKKKAEWALRWISDREAPFCERIVAFAAVEGIFFSGSFASIFWL 235
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 236 KKRGLMPGLTFSNELISRDEGL 257
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW L +E+YFIS+VLAFFAASDGIVNENLVERF+QEVQ+TEARCFY
Sbjct: 92 TAEEVDLSKDLPHWEALKPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFY 151
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 152 GFQIAMENIHSEMYSLLIDTYIKDPKER 179
>gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
oryzae RIB40]
gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
flavus NRRL3357]
gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
flavus NRRL3357]
gi|391873153|gb|EIT82227.1| ribonucleotide reductase, beta subunit [Aspergillus oryzae 3.042]
Length = 405
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 149/266 (56%), Gaps = 64/266 (24%)
Query: 54 KDLTNNLQQSKLSDSPIKD-----------KSTLKQVSAP------------------VQ 84
K ++ + K+SDSP+K S+L+ + P ++
Sbjct: 9 KQAASSFENLKMSDSPVKKLNFEAAGKENAPSSLQIIDVPATKTTVEKPTEVSSKIASIK 68
Query: 85 ENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------- 133
E EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 EMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWHNRLNDDE 128
Query: 134 ----------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+ N + +GE + +R Y F+I + Y +
Sbjct: 129 RFFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCF-YGFQIMIENIHAETYSLLIDT 187
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I K I+T+PC++KKADWA+RWI D+ S+FG+R++AFA+VEGIFFSGSFAS
Sbjct: 188 YIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQESTFGQRLVAFAAVEGIFFSGSFAS 247
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 248 IFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W N+L DE++FIS VLAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 109 EEIDLSKDLHDWHNRLNDDERFFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+H+E YSLLIDTYIK+ ++R
Sbjct: 169 FQIMIENIHAETYSLLIDTYIKEPKQR 195
>gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
clavatus NRRL 1]
gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
clavatus NRRL 1]
Length = 405
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 148/264 (56%), Gaps = 61/264 (23%)
Query: 54 KDLTNNLQQSKLSDSPIKD-----------KSTLKQVSAPVQENVE-------------- 88
K ++L+ K+SDSP+K ST APV++ VE
Sbjct: 9 KQAASSLENLKMSDSPVKKINFGVAGKENAPSTTPVTDAPVKKIVEKPTEASTKIAAIKE 68
Query: 89 ---TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK
Sbjct: 69 LEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDER 128
Query: 132 ----VVVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKI 179
V+ F E E+ S+ P Y F+I + Y + I
Sbjct: 129 YFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYI 188
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K I+T+PC+ KKA WA+RWI+D+ SSFG+R++AFA+VEGIFFSGSFASIF
Sbjct: 189 KEPKQRAYLFDAIDTIPCINKKAQWAMRWISDKESSFGQRLVAFAAVEGIFFSGSFASIF 248
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 249 WLKKRGLMPGLTFSNELISRDEGL 272
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEG----------- 221
VKK GK E P D ++ I ++ + ++ A +E
Sbjct: 25 VKKINFGVAGK--ENAPSTTPVTDAPVKKIVEKPTEASTKIAAIKELEANEPLLQENPHR 82
Query: 222 -IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAA 279
+ F + I+ + K+ ++ E I +DL WN +L DE+YFISHVLAFFAA
Sbjct: 83 FVLFPIKYHEIWQMYKKA--EASFWTAEEIDLSKDLHDWNNRLNDDERYFISHVLAFFAA 140
Query: 280 SDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
SDGIVNENL+ERF+ EVQ+ EARCFYGFQI +EN+HSE YSLLIDTYIK+ ++R
Sbjct: 141 SDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQR 194
>gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio]
Length = 349
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 133/208 (63%), Gaps = 35/208 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NP+RFVIFPIQY DIWKMYK+A+ASFWT EEVDLSK +
Sbjct: 26 SVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLTHWDGLKSEEKH 85
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + +R+ Y F+I + Y + I
Sbjct: 86 FISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSF-YGFQILIENVHSEMYSMLINTYI 144
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K ++TMPCV++KADWAL+WI+D S+FGER++AFA+VEGIFFSGSFA+I+
Sbjct: 145 RDLKERDYLFNAVQTMPCVRRKADWALQWISDTNSTFGERLVAFAAVEGIFFSGSFAAIY 204
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN 260
WLKKRGLMPGLT+SNELISRDE L H N
Sbjct: 205 WLKKRGLMPGLTYSNELISRDEGL-HCN 231
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+HW+ L +EK+FISHVLAFFAASDGIVNENLV+RF+QEVQ+ EAR FYGF
Sbjct: 65 EEVDLSKDLTHWDGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGF 124
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYS+LI+TYI+D +ER
Sbjct: 125 QILIENVHSEMYSMLINTYIRDLKER 150
>gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus]
gi|81885688|sp|Q6PEE3.1|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
AltName: Full=TP53-inducible ribonucleotide reductase M2
B; AltName: Full=p53-inducible ribonucleotide reductase
small subunit 2-like protein; Short=p53R2
gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus]
Length = 351
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 133/218 (61%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQENV---ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+Q+ + +ENV EPLLR + RRFVIFPIQY DIW+MYK+A+ASFWTAEEVDLSK +
Sbjct: 16 EQLCSETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDL 75
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+ E E+ S P Y F+I +
Sbjct: 76 P---HWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 132
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWIAD S+FGERV+AFA+
Sbjct: 133 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAA 192
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 193 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|358374795|dbj|GAA91384.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
kawachii IFO 4308]
Length = 396
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 147/260 (56%), Gaps = 58/260 (22%)
Query: 54 KDLTNNLQQSKLSDSPIK------------------DKSTLKQVSAP-----VQENVETE 90
K ++L+ K+SDSP+K +K K V AP ++E E
Sbjct: 9 KQAASSLENLKMSDSPVKKLNFGGKENAPAAVDVTAEKPVEKPVEAPKVAPGIKEMEANE 68
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------------- 133
PLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 PLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWHNRLNDDERYFISH 128
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + +GE + +R Y F+I + Y + I K
Sbjct: 129 VLAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQIMMENIHSETYSLLIDTYIKEPK 187
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I+T+PC+ KKADWA++WI D S+F +R++AFA+VEGIFFSGSFASIFWLKK
Sbjct: 188 QRTYLFDAIDTIPCIAKKADWAIKWIQDRESTFAQRLVAFAAVEGIFFSGSFASIFWLKK 247
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 248 RGLMPGLTFSNELISRDEGL 267
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W N+L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 103 EEIDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 162
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 163 FQIMMENIHSETYSLLIDTYIKEPKQR 189
>gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae]
gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae]
Length = 393
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 144/238 (60%), Gaps = 42/238 (17%)
Query: 52 TLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIW 111
+K++ NN +S +P S +++ + P ++E PLL++NPRRFVIFPIQY DIW
Sbjct: 44 VIKEVENNAGKS---GAP---ASIMEKSATPFDPSLE--PLLKENPRRFVIFPIQYHDIW 95
Query: 112 KMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTG 145
+MYKKAEASFWT EEVDLSK + + N + +
Sbjct: 96 QMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQ 155
Query: 146 EEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWA 198
E + + +R Y F+I + Y V I IETMP VK+KADWA
Sbjct: 156 EVQVTEARC-FYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWA 214
Query: 199 LRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
L WI+ ++++FGER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 215 LAWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W++L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 109 EEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPHQR 194
>gi|410987580|ref|XP_004000076.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Felis
catus]
Length = 351
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/202 (55%), Positives = 125/202 (61%), Gaps = 38/202 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE--- 146
EPLLR + RRFVIFPIQY DIWKMYKKA+ASFWTAEEVDLSK + LK+ E
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLP---HWNKLKSDEKYF 88
Query: 147 --------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITG 181
E+ S P Y F+I + Y + I
Sbjct: 89 ISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRD 148
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWL
Sbjct: 149 PKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWL 208
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 209 KKRGLMPGLTFSNELISRDEGL 230
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
[Oryctolagus cuniculus]
Length = 339
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/213 (53%), Positives = 131/213 (61%), Gaps = 34/213 (15%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---- 131
LK++S E+ EPLL+ + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 8 LKKLSPDTNED--EEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 65
Query: 132 -------------VVVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICR 170
V+ F E E+ S P Y F+I +
Sbjct: 66 WNRLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 125
Query: 171 YKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + I K IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIF
Sbjct: 126 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIF 185
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 186 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 218
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 78/88 (88%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWN+LT DEKYFISHVLAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 53 TAEEVDLSKDLPHWNRLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFY 112
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 113 GFQILIENVHSEMYSLLIDTYIRDPKKR 140
>gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 1 [Bos taurus]
gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Bos
taurus]
gi|296480530|tpg|DAA22645.1| TPA: ribonucleotide reductase M2 polypeptide-like [Bos taurus]
Length = 351
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 133/218 (61%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+++S+ EN + EPLLR + RRFVIFPIQY DIWKMYKKA+ASFWTAEEVDLSK +
Sbjct: 16 ERLSSDTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDL 75
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+ E E+ S P Y F+I +
Sbjct: 76 P---HWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 132
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWIAD S+FGERV+AFA+
Sbjct: 133 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAA 192
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 193 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 230
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWNKL
Sbjct: 25 NEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKA--QASFWTAEEVDLSKDLPHWNKLK 82
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
+EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 83 SEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 143 DTYIRDPKKR 152
>gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV]
gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV]
Length = 338
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 124/201 (61%), Gaps = 32/201 (15%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
+ EPLLR+NPRRFVIFPIQY D+W MYKKAEASFWT EEVDLSK
Sbjct: 18 QAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTRDWERLNDNERHFI 77
Query: 132 -VVVTNFEIRALKTGEEKASHSRNEP--------YLFRI-------KLAPGGICRYKVKK 175
V+ F E E Y F+I ++ I Y
Sbjct: 78 KHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENVHSEMYSTLIDTYVRSS 137
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K+ IETMPCVK+KA+WALRWIA + ++FGER++AFA+VEG+FFSGSFA+IFWLK
Sbjct: 138 EEKLRLLNAIETMPCVKEKAEWALRWIASKEATFGERLVAFAAVEGVFFSGSFAAIFWLK 197
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 198 KRGLMPGLTFSNELISRDEGL 218
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D W +L +E++FI HVLAFFAASDGIVNENLVERF QEVQ+ EARCFYGF
Sbjct: 55 EEVDLSKDTRDWERLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGF 114
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS LIDTY++ EE+
Sbjct: 115 QIAMENVHSEMYSTLIDTYVRSSEEK 140
>gi|126322530|ref|XP_001380256.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Monodelphis domestica]
Length = 361
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 126/202 (62%), Gaps = 38/202 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE--- 146
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + LK+ E
Sbjct: 42 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP---HWNKLKSDEKYF 98
Query: 147 --------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITG 181
E+ S P Y F+I + Y + I
Sbjct: 99 ISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSLLIDTYIKD 158
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ IETMPCVK+KADWAL+WIAD S+FGERV+AFA+VEGIFFSGSFA+IFWL
Sbjct: 159 PQKREFLFNAIETMPCVKRKADWALQWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWL 218
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 219 KKRGLMPGLTFSNELISRDEGL 240
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 77 EEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 136
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +EN+HSEMYSLLIDTYIKD ++R
Sbjct: 137 QILIENIHSEMYSLLIDTYIKDPQKR 162
>gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis]
gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis]
gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
Length = 391
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 137/226 (60%), Gaps = 36/226 (15%)
Query: 64 KLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWT 123
K +D +S +++ +P ++E PLLR+NPRRFVIFPIQY DIW+MYKKAEASFWT
Sbjct: 48 KEADPEKPAQSIMEKTGSPFDPSIE--PLLRENPRRFVIFPIQYHDIWQMYKKAEASFWT 105
Query: 124 AEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEPY 157
EEVDLSK + N + + E + + +R Y
Sbjct: 106 VEEVDLSKDATDWARLTDNERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARC-FY 164
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFG 210
F+I + Y V I + IETMP VK+KADWA+ WI+ ++++F
Sbjct: 165 GFQIAMENVHSEMYSVLIDTYIREPQERDYLFNAIETMPAVKRKADWAMSWISSKSANFA 224
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 225 ERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 270
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D + W +LT +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 107 EEVDLSKDATDWARLTDNERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI++ +ER
Sbjct: 167 QIAMENVHSEMYSVLIDTYIREPQER 192
>gi|350423884|ref|XP_003493620.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Bombus impatiens]
Length = 384
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 149/258 (57%), Gaps = 48/258 (18%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPI-------KDKSTLKQVSAPVQE----NVETEP 91
NI+ L + +LKD N KL SPI K+ + K V + + N E EP
Sbjct: 10 NIHRRLEKFSLKD---NTSPKKLCISPIISQENGIKNGTKAKDVKMTILKENGFNPELEP 66
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------ 133
LL++NPRRFV+FPIQ+ DIW+MYKKAEASFWT EEVDLSK V
Sbjct: 67 LLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVDLSKDVFDWNHLTSDEKHFISHVL 126
Query: 134 --------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-- 183
+ N + + E + + +R Y F++ + Y + IT K
Sbjct: 127 AFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQVAIENVHSEMYSMLIDTYITDIKER 185
Query: 184 -----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRG 238
IE +PCV KKA+WAL WI E+++F ERV+AFA+VEGIFFSGSFA+IFWLKKRG
Sbjct: 186 DFLFNAIENLPCVAKKANWALNWINHESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRG 245
Query: 239 LMPGLTFSNELISRDEDL 256
LMPGLTFSNELISRDE L
Sbjct: 246 LMPGLTFSNELISRDEGL 263
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN LT DEK+FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 100 EEVDLSKDVFDWNHLTSDEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 159
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+ENVHSEMYS+LIDTYI D +ER
Sbjct: 160 QVAIENVHSEMYSMLIDTYITDIKER 185
>gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo
sapiens]
Length = 423
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 141/242 (58%), Gaps = 39/242 (16%)
Query: 54 KDLTNNLQQSKLS-DSPIKDKSTLKQVSAPVQENVETE------PLLRDNPRRFVIFPIQ 106
K+LT L+ ++ S P KD + Q + E+E PLLR + RRFVIFPIQ
Sbjct: 61 KELTLGLRPARCSAPGPAKDDAWRPQAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQ 120
Query: 107 YQDIWKMYKKAEASFWTAEEVDLSK-----------------VVVTNFEIRALKTGE--- 146
Y DIWKMYK+A+ASFWTAEEVDLSK ++ F E
Sbjct: 121 YPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLV 180
Query: 147 EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKK 194
E+ S P Y F+I + Y + I K IETMP VKKK
Sbjct: 181 ERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKK 240
Query: 195 ADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
ADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE
Sbjct: 241 ADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDE 300
Query: 255 DL 256
L
Sbjct: 301 GL 302
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 137 TAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 196
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 197 GFQILIENVHSEMYSLLIDTYIRDPKKR 224
>gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio]
Length = 349
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 133/208 (63%), Gaps = 35/208 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+VE EPLLR+NP+RFVIFPIQY DIWKMYK+A+ASFWT EEVDLSK +
Sbjct: 26 SVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLTHWDGLKSEEKH 85
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + +R+ Y F+I + Y + I
Sbjct: 86 FISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSF-YGFQILIENVHSEMYSMLINTYI 144
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K ++TMPCV++KADWAL+WI+D S+FGER++AFA+VEGIFFSGSFA+I+
Sbjct: 145 RDLKERDYLFNAVQTMPCVRRKADWALQWISDTNSTFGERLVAFAAVEGIFFSGSFAAIY 204
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN 260
WLK+RGLMPGLT+SNELISRDE L H N
Sbjct: 205 WLKRRGLMPGLTYSNELISRDEGL-HCN 231
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+HW+ L +EK+FISHVLAFFAASDGIVNENLV+RF+QEVQ+ EAR FYGF
Sbjct: 65 EEVDLSKDLTHWDGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGF 124
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYS+LI+TYI+D +ER
Sbjct: 125 QILIENVHSEMYSMLINTYIRDLKER 150
>gi|389745325|gb|EIM86506.1| ribonucleotide reductase small subunit [Stereum hirsutum FP-91666
SS1]
Length = 420
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 152/260 (58%), Gaps = 55/260 (21%)
Query: 51 NTLKDLTNNL-QQSKLSDSP--IKDKSTLKQVSAPVQENVETE----------------- 90
NT K ++NL +++ +SP +KD L+ V+AP +E+ + E
Sbjct: 33 NTPKASSSNLIDDARVPNSPDTVKDADELQTVAAPAEEDGDVEDWRKRWVGEVDVEEHME 92
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------------- 133
PLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 93 PLLIESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRLNDNERHFISH 152
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E +A+ +R Y F+I + Y + I K
Sbjct: 153 VLAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDPK 211
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
+ET+PCVK+KADWAL+WI+D S F ER++AFA+VEGIFFSGSFASIFWLKK
Sbjct: 212 ERDYLFDAVETIPCVKRKADWALKWISDRRSCFAERLVAFAAVEGIFFSGSFASIFWLKK 271
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELI+RDE +
Sbjct: 272 RGLMPGLTFSNELITRDEGM 291
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 196 DWALRWIAD-EASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
DW RW+ + + E ++ + + F + I+ + K+ ++ E + +
Sbjct: 76 DWRKRWVGEVDVEEHMEPLLIESKRRFVLFPIQYHEIWQMYKKA--EASFWTAEEMDLSK 133
Query: 255 DLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL WN +L +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI MEN
Sbjct: 134 DLHDWNNRLNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMEN 193
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSE YSLLIDTYIKD +ER
Sbjct: 194 IHSETYSLLIDTYIKDPKER 213
>gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
[Saccoglossus kowalevskii]
Length = 402
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 141/233 (60%), Gaps = 39/233 (16%)
Query: 57 TNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKK 116
T N++Q P+K + K+ S P +N E EPLLRDNPRRFVIFPI+Y DIW+MYKK
Sbjct: 55 TQNIKQIITDVEPVKLE---KRKSKP--QNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKK 109
Query: 117 AEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGEEKAS 150
AEASFWTAEEVDLSK + + N + + E + +
Sbjct: 110 AEASFWTAEEVDLSKDLAHWASLKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVT 169
Query: 151 HSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIA 203
+R Y F+I + Y + I + IET+P VK+KA WAL WI
Sbjct: 170 EARC-FYGFQIAIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWIN 228
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 229 ADNATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 281
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+HW L DE++FISHVLAFFAASDGIVNENLVERF+QE+Q+TEARCFYGF
Sbjct: 118 EEVDLSKDLAHWASLKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGF 177
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTYI+D +ER
Sbjct: 178 QIAIENIHSEMYSLLIDTYIRDPQER 203
>gi|432107625|gb|ELK32858.1| Ribonucleoside-diphosphate reductase subunit M2 B [Myotis davidii]
Length = 353
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 132/218 (60%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+++S+ EN EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 18 RRLSSDTNENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDL 77
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+ E E+ S P Y F+I +
Sbjct: 78 P---HWHKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 134
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWIAD S+FGERV+AFA+
Sbjct: 135 VHSEMYSLLIDTYIREPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAA 194
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 195 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 232
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HW+KL
Sbjct: 27 NEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWHKLK 84
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
+EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 85 SEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 144
Query: 324 DTYIKDQEER 333
DTYI++ ++R
Sbjct: 145 DTYIREPKKR 154
>gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
MNPV]
gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
MNPV]
Length = 348
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 126/201 (62%), Gaps = 34/201 (16%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------- 133
EPLLR+NPRRFVIFPIQY D+W+MYKKAEASFWT EEVDLSK
Sbjct: 29 AEPLLRENPRRFVIFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWERLNDNERHFIK 88
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKK 175
+ N + E + + +R Y F+I ++ I Y
Sbjct: 89 HVLAFFAASDGIVNENLVERFAQEVQVAEARCF-YGFQIAMENVHSEMYSTLIDTYVRSS 147
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K+ IETMPCVK+KA+WALRWIA ++FGER++AFA+VEG+FFSGSFA+IFWLK
Sbjct: 148 EEKLRLLNAIETMPCVKEKAEWALRWIAGREAAFGERLVAFAAVEGVFFSGSFAAIFWLK 207
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 208 KRGLMPGLTFSNELISRDEGL 228
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D S W +L +E++FI HVLAFFAASDGIVNENLVERF QEVQ+ EARCFYGF
Sbjct: 65 EEVDLSKDTSDWERLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVAEARCFYGF 124
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS LIDTY++ EE+
Sbjct: 125 QIAMENVHSEMYSTLIDTYVRSSEEK 150
>gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 400
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 148/261 (56%), Gaps = 59/261 (22%)
Query: 54 KDLTNNLQQSKLSDSPIK---------DKSTLKQVSAPVQENVE---------------T 89
K ++L+ K++DSP+K + ++LK V P+++ E T
Sbjct: 9 KQAASSLENLKMNDSPVKKLDFQSGGKENASLKPVDTPIEKPTEKALENKPLTVKELEAT 68
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 EPLLQENPHRFVMFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWHNRLNDDERYFIS 128
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E + +R Y F+I + Y + I
Sbjct: 129 HVLAFFAASDGIVNENLVERFSAEVQVPEARCF-YGFQIMMENIHSETYSLLIDTYIKEP 187
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K I+T+PC+ KKA+WA+RWI D S+F R++AFA+VEGIFFSGSFASIFWLK
Sbjct: 188 KQRTYLFDAIDTIPCITKKANWAIRWINDRESTFASRLVAFAAVEGIFFSGSFASIFWLK 247
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 248 KRGLMPGLTFSNELISRDEGL 268
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W N+L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 104 EEIDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLVERFSAEVQVPEARCFYG 163
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 164 FQIMMENIHSETYSLLIDTYIKEPKQR 190
>gi|353237098|emb|CCA69079.1| probable small subunit of ribonucleotide reductase [Piriformospora
indica DSM 11827]
Length = 390
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 146/250 (58%), Gaps = 52/250 (20%)
Query: 57 TNNLQQSKLSDSPIKDKSTLKQVSAPVQE----------------NVETEPLLRDNPRRF 100
+NL +L+ +P+K +++ PVQE + + EPLL+++ RRF
Sbjct: 9 AHNLAALELT-TPVKPVDLASKLAEPVQEEPLEDYRKRFVGDVDLDEKDEPLLKESQRRF 67
Query: 101 VIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------- 133
V+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 68 VLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWENKLNDNERHFISHVLAFFAASDG 127
Query: 134 VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTIE 186
+ N + + E +A+ +R Y F+I + Y + I IE
Sbjct: 128 IVNENLVERFSAEVQAAEARC-FYGFQIMMENIHSETYSLLIDTYIKDAAQREYLFDAIE 186
Query: 187 TMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFS 246
+PC+K+KADWALRWI+D S+FGER+IAFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFS
Sbjct: 187 NIPCIKRKADWALRWISDRRSTFGERLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFS 246
Query: 247 NELISRDEDL 256
NELISRDE +
Sbjct: 247 NELISRDEGM 256
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL W NKL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 98 KDLHDWENKLNDNERHFISHVLAFFAASDGIVNENLVERFSAEVQAAEARCFYGFQIMME 157
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD +R
Sbjct: 158 NIHSETYSLLIDTYIKDAAQR 178
>gi|75076588|sp|Q4R741.1|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis]
gi|355698140|gb|EHH28688.1| Ribonucleoside-diphosphate reductase subunit M2 B [Macaca mulatta]
gi|355779870|gb|EHH64346.1| Ribonucleoside-diphosphate reductase subunit M2 B [Macaca
fascicularis]
gi|380788457|gb|AFE66104.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Macaca
mulatta]
gi|383418729|gb|AFH32578.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Macaca
mulatta]
Length = 351
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|346322004|gb|EGX91603.1| ribonucleoside-diphosphate reductase M2 subunit [Cordyceps
militaris CM01]
Length = 413
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 140/221 (63%), Gaps = 39/221 (17%)
Query: 70 IKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL 129
+KD +T+ V+ P Q + EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DL
Sbjct: 64 VKDDTTVA-VTKPEQMD---EPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 119
Query: 130 SKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIK 162
SK + + N + +GE + +R Y F+I
Sbjct: 120 SKDLHDWNNRLNADEQYFISHILAFFAASDGIVNENLIERFSGEVQIPEARC-FYGFQIM 178
Query: 163 LAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIA 215
+ I Y ++ + IET+PC++KKADWAL WI+D+ S+F +R++A
Sbjct: 179 MENIHSETYSLLIDTYIKEQAQRTYLFNAIETIPCIRKKADWALHWISDKQSTFAQRLVA 238
Query: 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA++EGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 239 FAAIEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 279
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISH+LAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 115 EEIDLSKDLHDWNNRLNADEQYFISHILAFFAASDGIVNENLIERFSGEVQIPEARCFYG 174
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q +R
Sbjct: 175 FQIMMENIHSETYSLLIDTYIKEQAQR 201
>gi|351712114|gb|EHB15033.1| Ribonucleoside-diphosphate reductase subunit M2 B, partial
[Heterocephalus glaber]
Length = 334
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/201 (53%), Positives = 125/201 (62%), Gaps = 30/201 (14%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV--------TNF 137
N EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + +
Sbjct: 13 NSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKPDEKY 72
Query: 138 EIRALKTGEEKASHSRNEPYLFRIKL-APGGICRYKVKKGGKITGGK------------- 183
I + + NE +F ++ P C Y + + +
Sbjct: 73 FISHILAFFAASDGIVNENLVFSQEVQVPEPCCFYGFQILIENVHSEMYSLLIDTYIRDP 132
Query: 184 --------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLK
Sbjct: 133 EKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLK 192
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 193 KRGLMPGLTFSNELISRDEGL 213
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLV F+QEVQ+ E CFYGF
Sbjct: 52 EEVDLSKDLPHWNKLKPDEKYFISHILAFFAASDGIVNENLV--FSQEVQVPEPCCFYGF 109
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D E+R
Sbjct: 110 QILIENVHSEMYSLLIDTYIRDPEKR 135
>gi|426235770|ref|XP_004011853.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Ovis
aries]
Length = 351
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 126/204 (61%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE- 146
+ EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + LK+ E
Sbjct: 30 DEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP---HWNKLKSEEK 86
Query: 147 ----------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKI 179
E+ S P Y F+I + Y + I
Sbjct: 87 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI 146
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IF
Sbjct: 147 RDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIF 206
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 207 WLKKRGLMPGLTFSNELISRDEGL 230
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL +EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|402878875|ref|XP_003903089.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 1 [Papio anubis]
Length = 351
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|397531941|gb|AFO54480.1| ribonucleotide reductase small subunit p53R2i [Carassius carassius]
Length = 337
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 132/210 (62%), Gaps = 39/210 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTG 145
+VE EPLLR+NP+RFVIFPIQY DIWKMYK+A+ASFWT EEVDLSK +V +LK+
Sbjct: 14 SVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLV---HWDSLKSE 70
Query: 146 E-----------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGG 177
E ++ S P Y F+I + Y +
Sbjct: 71 EKHFISHVLAFFAASDGIVNENLVQRFSQEVQIPEARSFYGFQILIENVHSEMYSMLINT 130
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I K I TMPCV++KADWAL+WI+D S+FGER++AFA+VEGIFFSGSFA+
Sbjct: 131 YIRDLKERDYLFNAIHTMPCVRRKADWALQWISDTNSTFGERLVAFAAVEGIFFSGSFAA 190
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWN 260
I+WLKKRGLM GLT+SNELISRDE L H N
Sbjct: 191 IYWLKKRGLMAGLTYSNELISRDEGL-HCN 219
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +EK+FISHVLAFFAASDGIVNENLV+RF+QEVQI EAR FYGF
Sbjct: 53 EEVDLSKDLVHWDSLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQIPEARSFYGF 112
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYS+LI+TYI+D +ER
Sbjct: 113 QILIENVHSEMYSMLINTYIRDLKER 138
>gi|344272991|ref|XP_003408311.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Loxodonta africana]
Length = 386
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/199 (56%), Positives = 127/199 (63%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFE------ 138
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + +T+ E
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLTSDEKYFISH 91
Query: 139 IRALKTGE---------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
I A E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKLT DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLTSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|400597058|gb|EJP64802.1| ribonucleotide reductase [Beauveria bassiana ARSEF 2860]
Length = 416
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 153/264 (57%), Gaps = 41/264 (15%)
Query: 28 VNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKD-KSTLKQVSAPVQEN 86
V LDF SG NL + T+ + Q ++ + KD K V+ ++
Sbjct: 24 VKKLDFSSGN-----KENLPADASLETTSTDIIDQKPIAIAAKKDAKDDTPAVAPGIKPE 78
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 79 EVDEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLTADEQY 138
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYK 172
+ N + +GE + +R Y F+I + I Y
Sbjct: 139 FISHILAFFAASDGIVNENLVERFSGEVQIPEARCF-YGFQIMMENIHSETYSLLIDTYI 197
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
++ + I+T+PC++KKADWALRWI+D+ S+F +R++AFA+VEGIFFSG+FASIF
Sbjct: 198 KEQAQRTYLFNAIDTIPCIRKKADWALRWISDKESTFAQRLVAFAAVEGIFFSGAFASIF 257
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 258 WLKKRGLMPGLTFSNELISRDEGL 281
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +LT DE+YFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 117 EEIDLSKDLHDWNNRLTADEQYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 176
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q +R
Sbjct: 177 FQIMMENIHSETYSLLIDTYIKEQAQR 203
>gi|403299934|ref|XP_003940726.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 1 [Saimiri boliviensis boliviensis]
Length = 351
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 1 [Sus scrofa]
Length = 351
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 125/202 (61%), Gaps = 38/202 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE--- 146
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + LK+ E
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP---HWNRLKSDEKYF 88
Query: 147 --------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITG 181
E+ S P Y F+I + Y + I
Sbjct: 89 ISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRD 148
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IETMP VKKKADWALRWIAD ++FGERV+AFA+VEGIFFSGSFA+IFWL
Sbjct: 149 PKQREFLFNAIETMPYVKKKADWALRWIADRKATFGERVVAFAAVEGIFFSGSFAAIFWL 208
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 209 KKRGLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWN+L
Sbjct: 25 NEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWNRLK 82
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 83 SDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 143 DTYIRDPKQR 152
>gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 36 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 95
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 96 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 155
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 156 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 215
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 216 GLMPGLTFSNELISRDEGL 234
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 71 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 130
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 131 QILIENVHSEMYSLLIDTYIRDPKKR 156
>gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens]
Length = 351
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii]
gi|75041724|sp|Q5R9G0.1|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii]
Length = 351
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca]
Length = 336
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 132/218 (60%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+++S+ EN + EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 1 QRLSSDTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDL 60
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+ E E+ S P Y F+I +
Sbjct: 61 P---HWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 117
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWI D S+FGERV+AFA+
Sbjct: 118 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKSTFGERVVAFAA 177
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 178 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 215
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWNKL
Sbjct: 10 NEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWNKLK 67
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 68 SDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 127
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 128 DTYIRDPKKR 137
>gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis]
gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis]
gi|370988477|dbj|BAL43553.1| ribonucleotide reductase M2 beta [Xenopus laevis]
Length = 406
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 139/243 (57%), Gaps = 46/243 (18%)
Query: 47 FLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQ 106
F P N D + Q +L +KD P+ ++ EPLLRDNP RFVI PI+
Sbjct: 56 FQPPNVNSDRISRGTQKELVCQSVKD---------PL---IQDEPLLRDNPGRFVILPIE 103
Query: 107 YQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIR 140
Y DIW+MYKKAEASFWTAEEVDLSK + + N +
Sbjct: 104 YHDIWQMYKKAEASFWTAEEVDLSKDLQHWETLKPEERYFIAYVLAFFAASDGIVNENLV 163
Query: 141 ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKK 193
+ E + + R Y F+I + Y + I K IET+PCVKK
Sbjct: 164 ERFSQEVQVTEVRC-FYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKK 222
Query: 194 KADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
KA+W+LRWI+D + + ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD
Sbjct: 223 KAEWSLRWISDREAPYCERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 282
Query: 254 EDL 256
E L
Sbjct: 283 EGL 285
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFI++VLAFFAASDGIVNENLVERF+QEVQ+TE RCFYGF
Sbjct: 122 EEVDLSKDLQHWETLKPEERYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGF 181
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 182 QIAMENIHSEMYSLLIDTYIKDPKER 207
>gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus
norvegicus]
gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus
norvegicus]
Length = 351
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKSEEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL +EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 65 TAEEVDLSKDLPHWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 124
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 125 GFQILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis]
Length = 406
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 139/243 (57%), Gaps = 46/243 (18%)
Query: 47 FLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQ 106
F P N D + Q +L +KD P+ ++ EPLLRDNP RFVI PI+
Sbjct: 56 FQPPNVNSDRISRGTQKELVCQSVKD---------PL---IQDEPLLRDNPGRFVILPIE 103
Query: 107 YQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIR 140
Y DIW+MYKKAEASFWTAEEVDLSK + + N +
Sbjct: 104 YHDIWQMYKKAEASFWTAEEVDLSKDLQHWETLKPEERYFISYVLAFFAASDGIVNENLV 163
Query: 141 ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKK 193
+ E + + R Y F+I + Y + I K IET+PCVKK
Sbjct: 164 ERFSQEVQVTEVRCF-YGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKK 222
Query: 194 KADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
KA+W+LRWI+D + + ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD
Sbjct: 223 KAEWSLRWISDREAPYCERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 282
Query: 254 EDL 256
E L
Sbjct: 283 EGL 285
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E+YFIS+VLAFFAASDGIVNENLVERF+QEVQ+TE RCFYGF
Sbjct: 122 EEVDLSKDLQHWETLKPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGF 181
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 182 QIAMENIHSEMYSLLIDTYIKDPKER 207
>gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo
sapiens]
gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 2 [Pan troglodytes]
gi|74727333|sp|Q7LG56.1|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
AltName: Full=TP53-inducible ribonucleotide reductase M2
B; AltName: Full=p53-inducible ribonucleotide reductase
small subunit 2-like protein; Short=p53R2
gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens]
gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens]
gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo
sapiens]
gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens]
gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo
sapiens]
gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
construct]
gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
construct]
gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct]
gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic
construct]
gi|410253810|gb|JAA14872.1| ribonucleotide reductase M2 B (TP53 inducible) [Pan troglodytes]
gi|410292306|gb|JAA24753.1| ribonucleotide reductase M2 B (TP53 inducible) [Pan troglodytes]
gi|410350059|gb|JAA41633.1| ribonucleotide reductase M2 B (TP53 inducible) [Pan troglodytes]
gi|410350061|gb|JAA41634.1| ribonucleotide reductase M2 B (TP53 inducible) [Pan troglodytes]
Length = 351
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
isoform 1 [Callithrix jacchus]
Length = 351
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
marneffei ATCC 18224]
gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
marneffei ATCC 18224]
Length = 406
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 133/213 (62%), Gaps = 35/213 (16%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+V+ ++E EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 61 KVAPSIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN 120
Query: 134 -----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ N + +GE + +R Y F+I +
Sbjct: 121 NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCF-YGFQIMMENIHSET 179
Query: 171 YKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + I K I+ +PC++KKADWALRWI+D+ S+F +R++AFA+VEGIF
Sbjct: 180 YSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWISDKESTFAQRLVAFAAVEGIF 239
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 240 FSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 108 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 167
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 168 FQIMMENIHSETYSLLIDTYINEPKQR 194
>gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A
[Paracoccidioides brasiliensis Pb03]
Length = 413
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 137/223 (61%), Gaps = 35/223 (15%)
Query: 68 SPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
+P+K K++ + ++ EPLL++NP RFV+FP++Y +IW+MYKKAEASFWTAEE+
Sbjct: 57 TPVKPVEQEKKIGSTAKDLEADEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEI 116
Query: 128 DLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFR 160
DLSK + + N + +GE + +R Y F+
Sbjct: 117 DLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQ 175
Query: 161 IKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERV 213
I + Y + I K I+T+PC++KKADWA+RWI D+ S+F +R+
Sbjct: 176 IMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIEDKESTFAQRL 235
Query: 214 IAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 236 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 114 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 173
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 174 FQIMMENIHSETYSLLIDTYIKEPKQR 200
>gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 1 [Equus caballus]
Length = 351
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLTSDEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
V+ F E E+ S P Y F+I + Y + I K
Sbjct: 92 VLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWAL+WIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALQWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 96/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWNKLT
Sbjct: 25 NEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWNKLT 82
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
DEKYFISHVLAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 83 SDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 143 DTYIRDPKKR 152
>gi|340726315|ref|XP_003401505.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Bombus terrestris]
Length = 366
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 136/224 (60%), Gaps = 38/224 (16%)
Query: 70 IKDKSTLKQVSAPVQE----NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAE 125
IK+ S +K V + + N E EPLL++NPRRFV+FPIQ+ DIW+MYKKAEASFWT E
Sbjct: 23 IKNGSKVKDVKMTILKENGFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVE 82
Query: 126 EVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEPYLF 159
EVDLSK + + N + + E + + +R Y F
Sbjct: 83 EVDLSKDIFDWNHLNSDEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGF 141
Query: 160 RIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGER 212
++ + Y + IT K IE +PCV KKA+WAL WI E+++F ER
Sbjct: 142 QVAIENVHSEMYSMLIDTYITDTKERDFLFNAIENLPCVAKKANWALNWINHESATFPER 201
Query: 213 VIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
V+AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 202 VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 245
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN L DEK+FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 82 EEVDLSKDIFDWNHLNSDEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 141
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+ENVHSEMYS+LIDTYI D +ER
Sbjct: 142 QVAIENVHSEMYSMLIDTYITDTKER 167
>gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi]
Length = 390
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 126/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL DNPRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 71 EPLLMDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWDSLKPSERHFISH 130
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E + + +R Y F+I + Y + I K
Sbjct: 131 VLAFFAASDGIVNENLVERFSQEVQVTEARCF-YGFQIAMENVHSEMYSLLIDTYIRDPK 189
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IET+PCVK+KADWA+ WI+ + +++GER++AFA+VEGIFFSGSFA+IFWLKK
Sbjct: 190 ERDFLFNAIETLPCVKRKADWAMNWISSKKANYGERIVAFAAVEGIFFSGSFAAIFWLKK 249
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 250 RGLMPGLTFSNELISRDEGL 269
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ W+ L E++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDMKDWDSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 166 QIAMENVHSEMYSLLIDTYIRDPKER 191
>gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
Length = 409
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 139/225 (61%), Gaps = 35/225 (15%)
Query: 66 SDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAE 125
+++ +K K T V+ ++ + EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAE
Sbjct: 52 ANTTMKKKETSAAVAPTIKADEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAE 111
Query: 126 EVDLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYL 158
E+DLSK + + N + +GE + +R Y
Sbjct: 112 EIDLSKDLHDWNNKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARC-FYG 170
Query: 159 FRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGE 211
F+I + I Y + + I+T+P ++KKADWALRWI D+ S+F +
Sbjct: 171 FQIMMENIHSETYSLLIDTYIKEPAQRTHLFNAIDTIPAIRKKADWALRWITDQKSTFAQ 230
Query: 212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
R++AFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 231 RLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 275
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN K+ DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 111 EEIDLSKDLHDWNNKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 171 FQIMMENIHSETYSLLIDTYIKEPAQR 197
>gi|409049897|gb|EKM59374.1| hypothetical protein PHACADRAFT_249824 [Phanerochaete carnosa
HHB-10118-sp]
Length = 416
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 145/254 (57%), Gaps = 46/254 (18%)
Query: 42 PNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLK-----QVSAPVQENVETEPLLRDN 96
PN + L D+ L++ +++ D LK QV P EPLL ++
Sbjct: 41 PNKRVLLEPVAFDDV--KLKKPAVAEEKHDDLDALKGRFVGQVDLPEH----MEPLLMES 94
Query: 97 PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------------------- 133
RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 95 KRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDIHDWTNRLNDKERYFISHVLAFFA 154
Query: 134 ----VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK------ 183
+ N + + E +A+ +R Y F+I + Y + I K
Sbjct: 155 ASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDPKQREHLF 213
Query: 184 -TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
IET+PC+KKKADWALRWI+D SSF ER++AFA+VEGIFFSGSFASIFWLKKRGLMPG
Sbjct: 214 DAIETIPCIKKKADWALRWISDTKSSFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPG 273
Query: 243 LTFSNELISRDEDL 256
LTFSNELISRDE +
Sbjct: 274 LTFSNELISRDEGM 287
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D+ W N+L E+YFISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 129 KDIHDWTNRLNDKERYFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMME 188
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD ++R
Sbjct: 189 NIHSETYSLLIDTYIKDPKQR 209
>gi|336271379|ref|XP_003350448.1| hypothetical protein SMAC_02161 [Sordaria macrospora k-hell]
gi|380090970|emb|CCC11503.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 410
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 136/220 (61%), Gaps = 35/220 (15%)
Query: 71 KDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
K S K+++ ++ EPLL +NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLS
Sbjct: 58 KKASEAKKIAPTLKPEEAAEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLS 117
Query: 131 KVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
K + + N + +GE + +R Y F+I +
Sbjct: 118 KDLHDWNNRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMM 176
Query: 164 APGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
I Y + + I+T+PC++KKADWALRWI D++S+F +R++AF
Sbjct: 177 ENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAF 236
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 AAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +LT DE++F+SH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 112 EEIDLSKDLHDWNNRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEPSQR 198
>gi|417409802|gb|JAA51392.1| Putative ribonucleotide reductase beta subunit, partial [Desmodus
rotundus]
Length = 336
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 132/218 (60%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
K++S+ EN EPLL+ + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 1 KRLSSDPNENEAKSSEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDL 60
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+ E E+ S P Y F+I +
Sbjct: 61 P---HWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 117
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWIAD S+FGERV+AFA+
Sbjct: 118 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRQSTFGERVVAFAA 177
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEG+FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 178 VEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 215
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWNKL
Sbjct: 10 NEAKSSEEPLLKKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWNKLK 67
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 68 SDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 127
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 128 DTYIRDPKKR 137
>gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus
Af293]
gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
fumigatus Af293]
gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
fumigatus A1163]
Length = 405
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 157/285 (55%), Gaps = 55/285 (19%)
Query: 9 TPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDS 68
TP S + +S + V L+FG G P+ + L+D+
Sbjct: 6 TPSKQAASSLENLKMSDSPVKKLNFGVVGKENAPS------------------STALTDA 47
Query: 69 P---IKDKST-LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
P I +K T +V+ ++E EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTA
Sbjct: 48 PTEKIAEKPTEASKVAQSIKELEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTA 107
Query: 125 EEVDLSK------------------VVVTNFEIRALKTGE---EKASHSRNEP-----YL 158
EE+DLSK V+ F E E+ S+ P Y
Sbjct: 108 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 167
Query: 159 FRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGE 211
F+I + Y + I K I+T+PC++KKA WA+RWI+D+ S+F +
Sbjct: 168 FQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKAQWAMRWISDKESTFAQ 227
Query: 212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 228 RLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 108 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 167
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLLIDTYIK+ ++R
Sbjct: 168 FQIMIENIHSETYSLLIDTYIKEPKQR 194
>gi|73974198|ref|XP_539109.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 2 [Canis lupus familiaris]
Length = 351
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 132/218 (60%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQEN---VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+++S+ EN + EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 16 ERLSSDTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDL 75
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+ E E+ S P Y F+I +
Sbjct: 76 P---HWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 132
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWI D S+FGERV+AFA+
Sbjct: 133 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKSTFGERVVAFAA 192
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 193 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>gi|417399461|gb|JAA46734.1| Putative ribonucleotide reductase beta subunit [Desmodus rotundus]
Length = 351
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 125/202 (61%), Gaps = 38/202 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE--- 146
EPLL+ + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + LK+ E
Sbjct: 32 EPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP---HWNKLKSDEKYF 88
Query: 147 --------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITG 181
E+ S P Y F+I + Y + I
Sbjct: 89 ISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRD 148
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWL
Sbjct: 149 PKKREFLFNAIETMPYVKKKADWALRWIADRQSTFGERVVAFAAVEGVFFSGSFAAIFWL 208
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 209 KKRGLMPGLTFSNELISRDEGL 230
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWNKL
Sbjct: 25 NEAKSSEEPLLKKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWNKLK 82
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 83 SDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 143 DTYIRDPKKR 152
>gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides
posadasii str. Silveira]
Length = 408
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 152/269 (56%), Gaps = 67/269 (24%)
Query: 54 KDLTNNLQQSKLSDSPIK-------DK----------STLKQV-------SAP------- 82
K ++L+Q K+SDSP+K DK S LK+ SAP
Sbjct: 9 KQTASSLEQLKMSDSPVKPLNFGLADKENAPLTAATESGLKKFDAEAVKPSAPEAPKKSL 68
Query: 83 -VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------- 133
+E EPLL++NP RFV+FP++Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 TPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHRLN 128
Query: 134 -------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+ N + +GE + +R Y F+I + Y +
Sbjct: 129 DDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQIMMENIHSETYSLL 187
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I K I+T+PC++KKADWA+RWI D+ S+F +R+IAFA+VEGIFFSGS
Sbjct: 188 IDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQESTFAQRLIAFAAVEGIFFSGS 247
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 248 FASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFIS VLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDLHDWNHRLNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEPKQR 198
>gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS]
gi|392869916|gb|EAS28456.2| ribonucleoside-diphosphate reductase small chain [Coccidioides
immitis RS]
Length = 408
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 152/269 (56%), Gaps = 67/269 (24%)
Query: 54 KDLTNNLQQSKLSDSPIK-------DK----------STLKQV-------SAP------- 82
K ++L+Q K+SDSP+K DK S LK+ SAP
Sbjct: 9 KQTASSLEQLKMSDSPVKPLNFGLADKENAPLTSATESGLKKFDAEAVKPSAPEVPKKSL 68
Query: 83 -VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------- 133
+E EPLL++NP RFV+FP++Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 TPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHRLN 128
Query: 134 -------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+ N + +GE + +R Y F+I + Y +
Sbjct: 129 DDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQIMMENIHSETYSLL 187
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I K I+T+PC++KKADWA+RWI D+ S+F +R+IAFA+VEGIFFSGS
Sbjct: 188 IDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQESTFAQRLIAFAAVEGIFFSGS 247
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 248 FASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFIS VLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDLHDWNHRLNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEPKQR 198
>gi|383861071|ref|XP_003706010.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Megachile rotundata]
Length = 383
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/259 (46%), Positives = 147/259 (56%), Gaps = 51/259 (19%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVS-------APVQEN---VETEPL 92
NI L +LKD T+ KL SP+ + +K +S ++EN E EPL
Sbjct: 10 NIRKNLENVSLKDQTS---PKKLCTSPVSQDNGVKNMSKTKAVRKVQLKENEFKPELEPL 66
Query: 93 LRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK-ASH 151
L++NPRRFV+FPIQ+ DIW+MYKKAEASFWT EEVDLSK F+ L + E+ SH
Sbjct: 67 LKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVDLSK---DTFDWDRLTSSEKHFISH 123
Query: 152 SR----------NEP-----------------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
NE Y F++ + Y + I K
Sbjct: 124 VLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQVAMENVHSEMYSLLIDTYIADAKE 183
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IE +PCV KKA+WAL WI E ++F ERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 184 RDFLFNAIENLPCVAKKANWALNWINHETATFPERVVAFAAVEGIFFSGSFAAIFWLKKR 243
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 244 GLMPGLTFSNELISRDEGL 262
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D W++LT EK+FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 99 EEVDLSKDTFDWDRLTSSEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 158
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+AMENVHSEMYSLLIDTYI D +ER
Sbjct: 159 QVAMENVHSEMYSLLIDTYIADAKER 184
>gi|336373646|gb|EGO01984.1| hypothetical protein SERLA73DRAFT_104202 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386462|gb|EGO27608.1| hypothetical protein SERLADRAFT_354853 [Serpula lacrymans var.
lacrymans S7.9]
Length = 379
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 140/238 (58%), Gaps = 41/238 (17%)
Query: 53 LKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
L+DL + S++ D K + V P E EPLL+D+ RRFV+FPIQY +IW+
Sbjct: 21 LQDLV--IDSSEVDDVEDIRKKFVGDVDLPESE----EPLLKDSKRRFVLFPIQYHEIWQ 74
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIRALKTG 145
MYKKAEASFWTAEE+DLSK V + N + +
Sbjct: 75 MYKKAEASFWTAEEMDLSKDVHDWANRLNDNERHFISHVLAFFAASDGIVNENLVERFSN 134
Query: 146 EEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWA 198
E +A+ +R Y F+I + Y + I +ET+PCVK+KADWA
Sbjct: 135 EVQAAEARC-FYGFQIMMENIHSETYSLLIDTYIKDPSEREYLFDAVETIPCVKRKADWA 193
Query: 199 LRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
L WI+D S+F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 194 LTWISDNRSTFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 251
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D+ W N+L +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 93 KDVHDWANRLNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMME 152
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD ER
Sbjct: 153 NIHSETYSLLIDTYIKDPSER 173
>gi|380024292|ref|XP_003695935.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase subunit M2-like [Apis florea]
Length = 383
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 146/257 (56%), Gaps = 47/257 (18%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPI--KDKSTLKQVSAPVQENV---------ETEP 91
NI L +LKD T+ KL P +D S+ V+A +N+ E EP
Sbjct: 10 NIRKHLENVSLKDKTS---PKKLCTLPTISQDNSSKNVVNAKAIQNMYLKENKFNPELEP 66
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------ 133
LL++NPRRFV+FPIQ+ DIW+MYKKAEASFWT EEVDLSK V
Sbjct: 67 LLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVDLSKDVFDWNNLTASEKHFISHVL 126
Query: 134 --------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-- 183
+ N + + E + + +R Y F++ + Y + I K
Sbjct: 127 AFFAASDGIVNENLVERFSQEVQITEARC-FYGFQVAMENVHSEMYSLLIDTYIADAKED 185
Query: 184 ----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGL 239
IE +PCV KKA WAL WI E+++F ERV+AFA+VEGIFFSGSFA+IFWLKKRGL
Sbjct: 186 FLFNAIENLPCVAKKAHWALNWINHESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRGL 245
Query: 240 MPGLTFSNELISRDEDL 256
MPGLTFSNELISRDE L
Sbjct: 246 MPGLTFSNELISRDEGL 262
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 74/85 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN LT EK+FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 100 EEVDLSKDVFDWNNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 159
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEE 332
Q+AMENVHSEMYSLLIDTYI D +E
Sbjct: 160 QVAMENVHSEMYSLLIDTYIADAKE 184
>gi|396476250|ref|XP_003839975.1| similar to ribonucleoside-diphosphate reductase subunit M2
[Leptosphaeria maculans JN3]
gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2
[Leptosphaeria maculans JN3]
Length = 410
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 137/221 (61%), Gaps = 36/221 (16%)
Query: 71 KDKSTLKQVSAP-VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL 129
+D S K +AP ++ EPLL++NP+RFV+FPI+Y D+W+MYKKAEASFWTAEE+DL
Sbjct: 51 EDASDHKPSTAPTIRPEEAHEPLLQENPQRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 110
Query: 130 SKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIK 162
SK + + N + +GE + +R Y F+I
Sbjct: 111 SKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCF-YGFQIM 169
Query: 163 LAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIA 215
+ Y + I+ + I+ +PC++KKADWALRWI+D+ S+F R++A
Sbjct: 170 MENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWISDKNSTFANRLVA 229
Query: 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 230 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 270
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 106 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 165
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYI + +R
Sbjct: 166 FQIMMENVHSETYSLLIDTYISEPRQR 192
>gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001]
Length = 413
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 144/244 (59%), Gaps = 38/244 (15%)
Query: 50 QNTLKDLTNNLQQSKLSDSPIKD--KSTLKQVSAP-VQENVETEPLLRDNPRRFVIFPIQ 106
Q D+ + + L P ++ K K V P ++E EPLL++N +RFV+FPI+
Sbjct: 37 QPLASDVAPATENTDLQTKPTQEIAKQEAKPVVVPGIKEQEMDEPLLQENGQRFVLFPIK 96
Query: 107 YQDIWKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEI 139
Y +IW+MYKKAEASFWTAEE+DLSK + + N +
Sbjct: 97 YHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNKINEDEKYFISHILAFFAASDGIVNENL 156
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVK 192
+GE + +R Y F+I + I Y + + I+T+PC++
Sbjct: 157 VERFSGEVQVPEARC-FYGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIR 215
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
KKADWAL+WI+DE SSF +R++AFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISR
Sbjct: 216 KKADWALKWISDEKSSFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISR 275
Query: 253 DEDL 256
DE L
Sbjct: 276 DEGL 279
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN K+ DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 115 EEIDLSKDLHDWNNKINEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYG 174
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 175 FQIMMENIHSETYSLLIDTYIKEPAQR 201
>gi|340522213|gb|EGR52446.1| predicted protein [Trichoderma reesei QM6a]
Length = 417
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 147/245 (60%), Gaps = 37/245 (15%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSPIK-DKSTLKQVSAPVQENVET-EPLLRDNPRRFVIFPI 105
L ++ L+ L + K +++ K +K K AP + E EP+L++NP+RFV+FPI
Sbjct: 39 LDESALESLAKEMDNHKPAETVKKVEKEAAKPAVAPTIKPEEIDEPILQENPQRFVLFPI 98
Query: 106 QYQDIWKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFE 138
+Y +IW+MYKKAEASFWTAEE+DLSK + + N
Sbjct: 99 KYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNEN 158
Query: 139 IRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCV 191
+ +GE + +R Y F+I + I Y + + IET+PC+
Sbjct: 159 LVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKEHSQRNYLFNAIETIPCI 217
Query: 192 KKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 251
+KKADWA+RWI D+ SSF +R++AFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELIS
Sbjct: 218 RKKADWAIRWIQDKNSSFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELIS 277
Query: 252 RDEDL 256
RDE L
Sbjct: 278 RDEGL 282
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 118 EEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 177
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 178 FQIMMENIHSETYSLLIDTYIKEHSQR 204
>gi|358383626|gb|EHK21290.1| hypothetical protein TRIVIDRAFT_78453 [Trichoderma virens Gv29-8]
Length = 415
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 143/243 (58%), Gaps = 35/243 (14%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQY 107
L ++ L+ L + + +K + V+ ++ + EP+L++NP+RFV+FPI+Y
Sbjct: 39 LDESALESLAKQMDDNHKPSETLKKEEAKPAVAPTIKPDEVDEPILQENPQRFVLFPIKY 98
Query: 108 QDIWKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIR 140
+IW+MYKKAEASFWTAEE+DLSK + + N +
Sbjct: 99 HEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLV 158
Query: 141 ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKK 193
+GE + +R Y F+I + Y + I IET+PC++K
Sbjct: 159 ERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKENSQRNYLFNAIETIPCIRK 217
Query: 194 KADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
KADWA++WI D+ SSF +R++AFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRD
Sbjct: 218 KADWAIKWIQDKNSSFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRD 277
Query: 254 EDL 256
E L
Sbjct: 278 EGL 280
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 116 EEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 175
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 176 FQIMMENIHSETYSLLIDTYIKENSQR 202
>gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
fischeri NRRL 181]
gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
fischeri NRRL 181]
Length = 405
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 156/285 (54%), Gaps = 55/285 (19%)
Query: 9 TPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDS 68
TP S + +S + V L+FG G P+ + L+D+
Sbjct: 6 TPSKQAASSLENLKMSDSPVKKLNFGVVGKENAPS------------------STALTDA 47
Query: 69 P---IKDKST-LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
P I +K T +V+ ++E EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTA
Sbjct: 48 PTEKIAEKPTEASKVAQSIKELEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTA 107
Query: 125 EEVDLSK------------------VVVTNFEIRALKTGE---EKASHSRNEP-----YL 158
EE+DLSK V+ F E E+ S+ P Y
Sbjct: 108 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 167
Query: 159 FRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGE 211
F+I + Y + I K I+T+PC+ KKA WA+RWI+D+ S+F +
Sbjct: 168 FQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIAKKAQWAMRWISDKESTFAQ 227
Query: 212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 228 RLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 108 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 167
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLLIDTYIK+ ++R
Sbjct: 168 FQIMIENIHSETYSLLIDTYIKEPKQR 194
>gi|395328927|gb|EJF61317.1| hypothetical protein DICSQDRAFT_61362 [Dichomitus squalens LYAD-421
SS1]
Length = 354
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 140/232 (60%), Gaps = 36/232 (15%)
Query: 60 LQQSKLSDSPIK-DKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAE 118
+Q+ ++ D+P S+ Q V EPLL ++ RRFV+FPIQY +IW+MYKKAE
Sbjct: 1 MQKLEIVDAPEPVSSSSRHQWVGEVDLPEHMEPLLMESKRRFVLFPIQYHEIWQMYKKAE 60
Query: 119 ASFWTAEEVDLSKVV---------------------------VTNFEIRALKTGEEKASH 151
ASFWTAEE+DLSK + + N + + E +A+
Sbjct: 61 ASFWTAEEMDLSKDLHDWNNRLNDDERHFISHVLAFFAASDGIVNENLVERFSNEVQAAE 120
Query: 152 SRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIAD 204
+R Y F+I + Y + I K I+T+PC+KKKADWALRWI+D
Sbjct: 121 ARC-FYGFQIMMENIHSETYSLLIDTYIKDPKQREHLFDAIDTIPCIKKKADWALRWISD 179
Query: 205 EASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ S+F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 180 KQSTFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 231
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL WN +L DE++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 73 KDLHDWNNRLNDDERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMME 132
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD ++R
Sbjct: 133 NIHSETYSLLIDTYIKDPKQR 153
>gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans
morsitans]
Length = 396
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 127/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP+RFVIFPIQY +IWKMYKKAEASFWTAEEVDLSK +
Sbjct: 77 EPLLKENPKRFVIFPIQYPEIWKMYKKAEASFWTAEEVDLSKDMDDWNRLSDGERHFISH 136
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E + + +R Y F+I + Y + I K
Sbjct: 137 VLAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENVHSEMYSLLIETYIMDEK 195
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IETMP VKKKA+WAL WI+ +++FGER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 196 EREYLFNAIETMPLVKKKAEWALAWISSHSANFGERIIAFAAVEGIFFSGSFASIFWLKK 255
Query: 237 RGLMPGLTFSNELISRDEDL 256
RG+MPGLTFSNE+ISRDE L
Sbjct: 256 RGIMPGLTFSNEMISRDEGL 275
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN+L+ E++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 112 EEVDLSKDMDDWNRLSDGERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 171
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLI+TYI D++ER
Sbjct: 172 QIAMENVHSEMYSLLIETYIMDEKER 197
>gi|340905392|gb|EGS17760.1| hypothetical protein CTHT_0071060 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 420
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 133/213 (62%), Gaps = 35/213 (16%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+V+ ++ EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 68 RVAPTIRPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN 127
Query: 134 -----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG--- 167
+ N + +GE + +R Y F+I +
Sbjct: 128 NRLNDDERYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCF-YGFQIMMENIHSET 186
Query: 168 ----ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
I Y + + IET+PC+KKKA+WALRWIAD+ S+F +R++AFA+VEGIF
Sbjct: 187 YSLLIDTYIKEPAQRQHLFNAIETIPCIKKKAEWALRWIADKKSTFAQRLVAFAAVEGIF 246
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 247 FSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 279
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 115 EEIDLSKDLHDWNNRLNDDERYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 174
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 175 FQIMMENIHSETYSLLIDTYIKEPAQR 201
>gi|402079098|gb|EJT74363.1| ribonucleoside-diphosphate reductase small subunit [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 420
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 145/240 (60%), Gaps = 49/240 (20%)
Query: 63 SKLSDSPIK-DKSTLKQVSAPVQEN-------VET----EPLLRDNPRRFVIFPIQYQDI 110
S D+PI DK +K +APV E VE+ EPLL++NP+RFV+FPI+Y +I
Sbjct: 45 SPAEDAPIATDKKPVK--AAPVDEKEVSNVSVVESLECDEPLLQENPQRFVLFPIKYHEI 102
Query: 111 WKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIRALK 143
W+MYKKAEASFWTAEE+DLSK + + N +
Sbjct: 103 WQMYKKAEASFWTAEEIDLSKDLHDWNNKLNEDEKYFISHILAFFAASDGIVNENLVERF 162
Query: 144 TGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKAD 196
+GE + +R Y F+I + I Y + + ++T+PC++KKAD
Sbjct: 163 SGEVQVPEARCF-YGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAVDTIPCIRKKAD 221
Query: 197 WALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WAL+WI+D+ S+F R+IAFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 222 WALKWISDKESTFASRLIAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 281
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN KL DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 117 EEIDLSKDLHDWNNKLNEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYG 176
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 177 FQIMMENIHSETYSLLIDTYIKEPAQR 203
>gi|406867406|gb|EKD20444.1| ribonucleotide reductase small subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 414
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 136/218 (62%), Gaps = 35/218 (16%)
Query: 73 KSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKV 132
K+ + +V+ ++ EPLLR+NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK
Sbjct: 61 KTEIIKVAPTIKPEEADEPLLRENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKD 120
Query: 133 V---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAP 165
+ + N + +GE + +R Y F+I +
Sbjct: 121 LHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARC-FYGFQIMMEN 179
Query: 166 GG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
I Y ++ K I+T+PC+KKKADWA++WI D+ S+F +R++AFA+
Sbjct: 180 IHSETYSLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIEDKNSTFAQRLVAFAA 239
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFASIFWLKKRGLM GLTFSNELISRDE L
Sbjct: 240 VEGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGL 277
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 113 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 172
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q ++
Sbjct: 173 FQIMMENIHSETYSLLIDTYIKEQSQK 199
>gi|392593078|gb|EIW82404.1| ribonucleotide reductase small subunit [Coniophora puteana
RWD-64-598 SS2]
Length = 413
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL+++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 89 EPLLKESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRLNNNERHFIS 148
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 149 HVLAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDP 207
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ET+PCVK+KADWALRWI+D+ S+F ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 208 AQREYLFDAVETIPCVKRKADWALRWISDQRSTFAERLVAFAAVEGIFFSGSFASIFWLK 267
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 268 KRGLMPGLTFSNELISRDEGM 288
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL WN +L +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 130 KDLHDWNNRLNNNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMME 189
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD +R
Sbjct: 190 NIHSETYSLLIDTYIKDPAQR 210
>gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
terreus NIH2624]
gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
terreus NIH2624]
Length = 401
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 147/264 (55%), Gaps = 62/264 (23%)
Query: 54 KDLTNNLQQSKLSDSPIK----------DKSTLKQVSAP-----------------VQEN 86
K ++L+ K+SDSP+K + + V AP ++E
Sbjct: 9 KQAASSLENLKMSDSPVKKLNFDTTGKENAPSTVPVDAPTKVVAEKPAEALKVAPGIKEM 68
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 EANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNEDERY 128
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + +GE + +R Y F+I + Y + I
Sbjct: 129 FISHVLAFFAASDGIVNENLVERFSGEVQIPEARCF-YGFQIMIENIHSETYSLLIDTYI 187
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K I+ +PC+ KKADWA++WI D+ S+FG+R++AFA+VEGIFFSGSFASIF
Sbjct: 188 KEPKQRTYLFDAIDNIPCIAKKADWAIKWIQDQESTFGQRLVAFAAVEGIFFSGSFASIF 247
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 248 WLKKRGLMPGLTFSNELISRDEGL 271
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 107 EEIDLSKDLHDWNNRLNEDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 166
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLLIDTYIK+ ++R
Sbjct: 167 FQIMIENIHSETYSLLIDTYIKEPKQR 193
>gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
Length = 408
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 151/269 (56%), Gaps = 67/269 (24%)
Query: 54 KDLTNNLQQSKLSDSPIK-------DKST-----------LKQVSAPVQENVET------ 89
K ++L++ K++DSPIK DK LK+V + ET
Sbjct: 9 KQTASSLEKLKMNDSPIKPLKLDHADKENAPVSSHIAEPELKKVEIEASKPAETQVVKPK 68
Query: 90 --------EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------- 133
EPLL++NP+RFV+FPI+Y++IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 TPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWNNRLN 128
Query: 134 -------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+ N + + E + +R Y F+I + Y +
Sbjct: 129 DDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCF-YGFQIMMENIHSETYSLL 187
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I K I+T+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSGS
Sbjct: 188 IDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDKDSTFAQRLVAFAAVEGIFFSGS 247
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 248 FASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L DE+YFISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDIHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q++R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEQKQR 198
>gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
gypseum CBS 118893]
gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
gypseum CBS 118893]
Length = 408
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 139/230 (60%), Gaps = 40/230 (17%)
Query: 60 LQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEA 119
L+ SK +++ + T K++ A EPLL++NP+RFV+FPI+Y++IW+MYKKAEA
Sbjct: 54 LETSKPTEAQVVKAKTPKELEA-------EEPLLQENPQRFVLFPIKYREIWQMYKKAEA 106
Query: 120 SFWTAEEVDLSKVVVT---------NFEIRALKTGEEKASHSRNEPYLFRIK---LAPGG 167
SFWTAEE+DLSK + F I + + NE L R P
Sbjct: 107 SFWTAEEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEA 166
Query: 168 ICRYKVKKGGKITGGKT---------------------IETMPCVKKKADWALRWIADEA 206
C Y + + +T I+T+PC++KKADWA+RWI D+
Sbjct: 167 RCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDKD 226
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
S+F +R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 227 STFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L DE++FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q++R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEQKQR 198
>gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+]
gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+]
Length = 409
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 135/218 (61%), Gaps = 34/218 (15%)
Query: 73 KSTLKQVSAP-VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
K +K V+AP ++ + EPLL +NP+RFV+FPI+Y ++W+MYKKAEASFWTAEE+DLSK
Sbjct: 58 KEEIKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLSK 117
Query: 132 VVVT---------NFEIRALKTGEEKASHSRNEPYLFRIKLA---PGGICRYKVKKGGKI 179
+ F I + + NE + R P C Y + +
Sbjct: 118 DLHDWSNKLNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMEN 177
Query: 180 TGGKT---------------------IETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
+T I+T+PC++KKADWALRWI+D+ +SF +R++AFA+
Sbjct: 178 IHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWISDKDASFAQRLVAFAA 237
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 238 VEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 275
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL DEK+FISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 111 EEIDLSKDLHDWSNKLNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 171 FQIMMENIHSETYSLLIDTYIKEPSQR 197
>gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC
30864]
Length = 352
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 120/206 (58%), Gaps = 46/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL+ NP RFV+FPIQY D+WKMYKKAEASFWTAEEVDLSK
Sbjct: 33 EPLLKPNPHRFVLFPIQYHDVWKMYKKAEASFWTAEEVDLSKDLNDWDKLKSEERHFISH 92
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V N E+R+ + + +E Y I +
Sbjct: 93 VLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIENIHSEMYSLLIDM------- 145
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y + IET+PCV KKA WALRWI+D S+F R+IAFA+VEGIFFSGSFA+
Sbjct: 146 YIKDSAEREKLFNAIETLPCVAKKAQWALRWISDRRSTFAHRLIAFAAVEGIFFSGSFAA 205
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 206 IFWLKKRGLMPGLTFSNELISRDEGL 231
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W+KL +E++FISHVLAFFAASDGIVNENL+ RF+ EVQI E R FY F
Sbjct: 68 EEVDLSKDLNDWDKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCF 127
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLID YIKD ER
Sbjct: 128 QIAIENIHSEMYSLLIDMYIKDSAER 153
>gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
CBS 118892]
gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
CBS 118892]
Length = 408
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 148/268 (55%), Gaps = 65/268 (24%)
Query: 54 KDLTNNLQQSKLSDSPIK-------DKST-----------LKQVSAPVQENVET------ 89
K ++L++ K+ DSPIK DK LK+V + ET
Sbjct: 9 KQTASSLEKLKMDDSPIKPLKLDLADKENAPVSSHIAEPELKKVEIEASKPAETQVVKPK 68
Query: 90 --------EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT------ 135
EPLL++NP+RFV+FPI+Y++IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 TPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWNNRLN 128
Query: 136 ---NFEIRALKTGEEKASHSRNEPYLFRIK---LAPGGICRYKVKKGGKITGGKT----- 184
F I + + NE L R P C Y + + +T
Sbjct: 129 DDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLI 188
Query: 185 ----------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
I+T+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSGSF
Sbjct: 189 DTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDKNSTFAQRLVAFAAVEGIFFSGSF 248
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
ASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 249 ASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L DE++FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q++R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEQKQR 198
>gi|397531943|gb|AFO54481.1| ribonucleotide reductase small subunit p53R2ii [Carassius
carassius]
Length = 349
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 132/210 (62%), Gaps = 39/210 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTG 145
+VE EPLL++NP+RFVIFPIQY DIWKMYK+A+ASFWT EEVDLSK +V +LK+
Sbjct: 26 SVEDEPLLKENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLV---HWDSLKSE 82
Query: 146 E-----------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGG 177
E ++ S P Y F+I + Y +
Sbjct: 83 EKHFISHVLAFFAASDGIVNENLVQRFSQEVQIPEARSFYGFQILIENVHSEMYSMLINT 142
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I K I TMP V++KADWAL+WI+D S+FGER++AFA+VEGIFFSGSFA+
Sbjct: 143 YIRDLKERDFLFNAIHTMPFVRRKADWALQWISDTNSTFGERLVAFAAVEGIFFSGSFAA 202
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWN 260
I+WLKKRGLMPGLT+SNELISRDE L H N
Sbjct: 203 IYWLKKRGLMPGLTYSNELISRDEGL-HCN 231
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +EK+FISHVLAFFAASDGIVNENLV+RF+QEVQI EAR FYGF
Sbjct: 65 EEVDLSKDLVHWDSLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQIPEARSFYGF 124
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYS+LI+TYI+D +ER
Sbjct: 125 QILIENVHSEMYSMLINTYIRDLKER 150
>gi|380485558|emb|CCF39283.1| ribonucleoside-diphosphate reductase small subunit [Colletotrichum
higginsianum]
Length = 413
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 138/234 (58%), Gaps = 35/234 (14%)
Query: 57 TNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKK 116
T N + + + T V+ ++E EPLL++N +RFV+FPI+Y +IW+MYKK
Sbjct: 47 TENTDKQTKPTQEVAKQQTKPAVAPSIKEQELDEPLLQENGQRFVLFPIKYHEIWQMYKK 106
Query: 117 AEASFWTAEEVDLSKVV---------------------------VTNFEIRALKTGEEKA 149
AEASFWTAEE+DLSK + + N + +GE +
Sbjct: 107 AEASFWTAEEIDLSKDLHDWNNKINEDEKYFISHILAFFAASDGIVNENLVERFSGEVQV 166
Query: 150 SHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWI 202
+R Y F+I + I Y + + I+T+PC++KKADWAL+WI
Sbjct: 167 PEARC-FYGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALKWI 225
Query: 203 ADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
DE SSF +R++AFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 226 NDEKSSFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 279
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN K+ DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 115 EEIDLSKDLHDWNNKINEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYG 174
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 175 FQIMMENIHSETYSLLIDTYIKEPAQR 201
>gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Ailuropoda melanoleuca]
Length = 387
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 125/204 (61%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE- 146
+ EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + LK+ E
Sbjct: 66 DEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP---HWNKLKSDEK 122
Query: 147 ----------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKI 179
E+ S P Y F+I + Y + I
Sbjct: 123 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI 182
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMP VKKKADWALRWI D S+FGERV+AFA+VEGIFFSGSFA+IF
Sbjct: 183 RDPKKREFLFNAIETMPYVKKKADWALRWIEDRKSTFGERVVAFAAVEGIFFSGSFAAIF 242
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 243 WLKKRGLMPGLTFSNELISRDEGL 266
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+EA S E ++ +S + F + I+ + K+ ++ E + +DL HWNKL
Sbjct: 61 NEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWNKLK 118
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 119 SDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 178
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 179 DTYIRDPKKR 188
>gi|443927278|gb|ELU45786.1| ribonucleotide reductase small subunit [Rhizoctonia solani AG-1 IA]
Length = 457
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 141/236 (59%), Gaps = 39/236 (16%)
Query: 51 NTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDI 110
++L DL + ++ P++D + V + + EPLL+++ RRFV+FPIQY +I
Sbjct: 98 DSLDDLDLSPNADNGAEEPLEDYRL--RFVGDVDLDEKDEPLLKESRRRFVLFPIQYHEI 155
Query: 111 WKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIRALK 143
W+MYKKAEASFWTAEE+DLSK + + N +
Sbjct: 156 WQMYKKAEASFWTAEEMDLSKDLHDWDNKLNDNERHFISHVLAFFAASDGIVNENLVERF 215
Query: 144 TGEEKASHSRN---EPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALR 200
+ E +A+ + N E Y I Y + + IET+PC+KKKADWAL+
Sbjct: 216 SNEVQAAEAENIHSETYSLLIDT-------YIKEPAQREFLFDAIETIPCIKKKADWALK 268
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WI+D S+F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 269 WISDRRSTFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 324
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 14/140 (10%)
Query: 196 DWALRWIAD-EASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
D+ LR++ D + E ++ + + F + I+ + K+ ++ E + +
Sbjct: 119 DYRLRFVGDVDLDEKDEPLLKESRRRFVLFPIQYHEIWQMYKKA--EASFWTAEEMDLSK 176
Query: 255 DLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL W NKL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EA EN
Sbjct: 177 DLHDWDNKLNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEA----------EN 226
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSE YSLLIDTYIK+ +R
Sbjct: 227 IHSETYSLLIDTYIKEPAQR 246
>gi|345107208|ref|YP_004821373.1| ribonucleotide reductase small subunit [Yoka poxvirus]
gi|344267282|gb|AEN03609.1| ribonucleotide reductase small subunit [Yoka poxvirus]
Length = 321
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 126/200 (63%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L++N RFVIFPIQY+DIW MYKKAEASFWT EEVDLSK +
Sbjct: 2 EPILKENKNRFVIFPIQYRDIWNMYKKAEASFWTVEEVDLSKDINDWNTLTSDEKHFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLVERFCSEVQITEARC-FYGFQMAIENIHSEMYSLLIDAYVKDTD 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
++ +IETMPCVKKKADWAL+WI + +S+GER++AFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 ERMYLFNSIETMPCVKKKADWALKWIHNNDASYGERLVAFAAVEGIFFSGSFASIFWLKK 180
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 181 RGLMPGLTFSNELISRDEGL 200
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WN LT DEK+FI HVLAFFAASDGIVNENLVERF EVQITEARCFYGF
Sbjct: 37 EEVDLSKDINDWNTLTSDEKHFIKHVLAFFAASDGIVNENLVERFCSEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLID Y+KD +ER
Sbjct: 97 QMAIENIHSEMYSLLIDAYVKDTDER 122
>gi|345326583|ref|XP_001508783.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Ornithorhynchus anatinus]
Length = 367
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 133/222 (59%), Gaps = 34/222 (15%)
Query: 69 PIKDKSTLKQVSAPVQENVET--EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEE 126
P + +S S P + ++ EPLLR + RRFVIFPIQY +IWKMYK+A+ASFWTAEE
Sbjct: 25 PDRTRSDRDFSSEPTENGLQPCEEPLLRKSSRRFVIFPIQYPEIWKMYKQAQASFWTAEE 84
Query: 127 VDLSK-----------------VVVTNFEIRALKTGE---EKASHSRNEP-----YLFRI 161
VDLSK ++ F E E+ S P Y F+I
Sbjct: 85 VDLSKDLPHWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQI 144
Query: 162 KLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVI 214
+ Y + I K IETMP VKKKADW+LRWIAD S+FGERV+
Sbjct: 145 LIENVHSEMYSLLIDTYIKDPKKREFLFNAIETMPFVKKKADWSLRWIADRQSTFGERVV 204
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 205 AFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 246
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL +EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 81 TAEEVDLSKDLPHWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 140
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYIKD ++R
Sbjct: 141 GFQILIENVHSEMYSLLIDTYIKDPKKR 168
>gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Acyrthosiphon pisum]
Length = 361
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 142/237 (59%), Gaps = 40/237 (16%)
Query: 54 KDLTNNLQQSKLSDSPIKDKSTLKQVSA-PVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+++ +N QQ ++++ K+ + VSA + EPLL+DNPRRFVIFPI Y DIW
Sbjct: 7 ENVMDNSQQLQMTN-----KNFFESVSAYRANFDATIEPLLKDNPRRFVIFPIIYDDIWA 61
Query: 113 MYKKAEASFWTAEEVDL------------------SKVV--------VTNFEIRALKTGE 146
MYKK EASFW EEV+L S V+ + N + + E
Sbjct: 62 MYKKQEASFWNVEEVNLKSDLEDWMKLTDDERHFISHVLAFFAASDGIVNENLVERFSQE 121
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWAL 199
+ + +R Y F+I + Y + I K IETMPCVKKKADWAL
Sbjct: 122 VQVTEARC-FYGFQIMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIETMPCVKKKADWAL 180
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+WI+D ++FGER++AFA+VEGIFFSGSFA++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 181 KWISDSKATFGERLVAFAAVEGIFFSGSFAALFWLKKRGLMPGLTFSNELISRDEGL 237
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E ++ DL W KLT DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 74 EEVNLKSDLEDWMKLTDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 133
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSEMYSLLIDTYI+D +E+
Sbjct: 134 QIMMENIHSEMYSLLIDTYIQDPKEK 159
>gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1]
Length = 329
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 128/205 (62%), Gaps = 34/205 (16%)
Query: 85 ENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT--------N 136
E ++ EPLLR NPRRFVI PIQ+ IWKMYKKAEASFWT EEVDL + +V
Sbjct: 5 EEIQAEPLLRANPRRFVILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDWNKLNKDEQ 64
Query: 137 FEIRAL----KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK------------------ 174
F I+ + + + + E ++ ++L P C Y +
Sbjct: 65 FFIKHVLAFFAASDGIVNENLVERFMTEVQL-PEARCFYGFQIAIENIHSEMYSRLIETY 123
Query: 175 ---KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
K + IET+P V++KA+WA+RWI+ + +SFGERV+AFA+VEGIFFSGSFA+I
Sbjct: 124 VNDSAEKDSLFNAIETLPAVRRKAEWAMRWISHDKASFGERVVAFAAVEGIFFSGSFAAI 183
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 184 FWLKKRGLMPGLTFSNELISRDEGL 208
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + DL WNKL +DE++FI HVLAFFAASDGIVNENLVERF EVQ+ EARCFYGF
Sbjct: 45 EEVDLGRDLVDWNKLNKDEQFFIKHVLAFFAASDGIVNENLVERFMTEVQLPEARCFYGF 104
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYS LI+TY+ D E+
Sbjct: 105 QIAIENIHSEMYSRLIETYVNDSAEK 130
>gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
stipitatus ATCC 10500]
gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
stipitatus ATCC 10500]
Length = 406
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 133/213 (62%), Gaps = 35/213 (16%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+V+ ++E EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 61 KVAPGIKEMEVNEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN 120
Query: 134 -----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ N + +GE + +R Y F+I +
Sbjct: 121 NRLNDDERYFVSRVLAFFAASDGIVNENLVERFSGEVQIPEARCF-YGFQIMMENIHSET 179
Query: 171 YKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + I K I+ +PC++KKADWALRWI+D+ S+F +R++AFA+VEGIF
Sbjct: 180 YSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWISDKESTFAQRLVAFAAVEGIF 239
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 240 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 272
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YF+S VLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 108 EEIDLSKDLHDWNNRLNDDERYFVSRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 167
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 168 FQIMMENIHSETYSLLIDTYINEPKQR 194
>gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
1 [Apis mellifera]
Length = 384
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 142/255 (55%), Gaps = 42/255 (16%)
Query: 43 NINLFLPQNTLKDLTNN--------LQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLR 94
NI L +LKD T+ + Q S + I K+ + N E EPLL+
Sbjct: 10 NIRKHLENVSLKDKTSPKKLCTLPIISQGNSSKNVINTKAIQNMYLKENKFNPELEPLLK 69
Query: 95 DNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------- 133
+NPRRFV+FPIQ+ DIW+MYKKAEASFWT EEVDLSK V
Sbjct: 70 ENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVDLSKDVFDWNNLTASEKHFISHVLAFF 129
Query: 134 -----VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK----- 183
+ N + + E + + +R Y F++ + Y + I K
Sbjct: 130 AASDGIVNENLVERFSQEVQITEARC-FYGFQVAMENVHSEMYSLLIDTYIADAKERDFL 188
Query: 184 --TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMP 241
IE +PCV KKA WAL WI E+++F ERV+AFA+VEGIFFSGSFA+IFWLKKRGLMP
Sbjct: 189 FNAIENLPCVAKKAHWALNWINHESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRGLMP 248
Query: 242 GLTFSNELISRDEDL 256
GLTFSNELISRDE L
Sbjct: 249 GLTFSNELISRDEGL 263
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN LT EK+FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 100 EEVDLSKDVFDWNNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 159
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+AMENVHSEMYSLLIDTYI D +ER
Sbjct: 160 QVAMENVHSEMYSLLIDTYIADAKER 185
>gi|403418122|emb|CCM04822.1| predicted protein [Fibroporia radiculosa]
Length = 385
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 121/200 (60%), Gaps = 33/200 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RRFV+FPIQY DIW+MYKKAEASFWTAEE+DLS
Sbjct: 54 EPLLTESKRRFVLFPIQYHDIWQMYKKAEASFWTAEEIDLSHDLWDWKDRLNDDEKYFIS 113
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK 183
V+ F E NE Y F+I + Y + I K
Sbjct: 114 HVLAFFAASDGIVNENLVDRFSNEVQVAEARCFYGFQIMIENIHSETYSLLLDTYIKDQK 173
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IET+PC+KKKADWALRWIAD+ SSF ER++AFA+VEGIFFSGSFASIFWLKK
Sbjct: 174 QRAHLFDAIETIPCIKKKADWALRWIADKQSSFAERLVAFAAVEGIFFSGSFASIFWLKK 233
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLT+SNELI RDE +
Sbjct: 234 RGLMPGLTYSNELIIRDEGM 253
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I DL W ++L DEKYFISHVLAFFAASDGIVNENLV+RF+ EVQ+ EARCFYG
Sbjct: 89 EEIDLSHDLWDWKDRLNDDEKYFISHVLAFFAASDGIVNENLVDRFSNEVQVAEARCFYG 148
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLL+DTYIKDQ++R
Sbjct: 149 FQIMIENIHSETYSLLLDTYIKDQKQR 175
>gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
anisopliae ARSEF 23]
Length = 414
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 146/263 (55%), Gaps = 40/263 (15%)
Query: 28 VNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENV 87
V LDFG +P L + + L + S K V+ ++
Sbjct: 24 VKKLDFGVANKENKP-----LDEAAVAALAEQVDAEHESKIESKKDDKSAAVAPGIKAEE 78
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 79 VDEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKYF 138
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKV 173
+ N + +GE + +R Y F+I + I Y
Sbjct: 139 ISHILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIK 197
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ + I+T+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSG+FASIFW
Sbjct: 198 ENAQRTYLFNAIDTIPCIRKKADWAIRWIQDKESTFAQRLVAFAAVEGIFFSGAFASIFW 257
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 258 LKKRGLMPGLTFSNELISRDEGL 280
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 116 EEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 175
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 176 FQIMMENIHSETYSLLIDTYIKENAQR 202
>gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
dermatitidis SLH14081]
gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
dermatitidis SLH14081]
gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
dermatitidis ER-3]
gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188]
Length = 413
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 136/223 (60%), Gaps = 35/223 (15%)
Query: 68 SPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
+P++ + T K+ ++ EPLL++NP RFV+FP++Y +IW+MYKKAEASFWTAEE+
Sbjct: 57 TPLRPEETEKKALTGMKALEAEEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEI 116
Query: 128 DLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFR 160
DLSK + + N + + E + +R Y F+
Sbjct: 117 DLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCF-YGFQ 175
Query: 161 IKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERV 213
I + Y + I K I+T+PC++KKADWA+RWI D+ SSF +R+
Sbjct: 176 IMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIEDKESSFAQRL 235
Query: 214 IAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 236 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 114 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCFYG 173
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 174 FQIMMENIHSETYSLLIDTYIKEPKQR 200
>gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 57 EPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLTSDEQFFIS 116
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
+ N + +GE + +R Y F+I + I Y +
Sbjct: 117 HILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKEP 175
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IET+PC++KKADWA+RWI D+ SSF +R++AFA+VEGIFFSG+FASIFWLK
Sbjct: 176 SQRTYLFNAIETIPCIRKKADWAIRWIQDKDSSFAQRLVAFAAVEGIFFSGAFASIFWLK 235
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 236 KRGLMPGLTFSNELISRDEGL 256
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +LT DE++FISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 92 EEIDLSKDLHDWNNRLTSDEQFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 151
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 152 FQIMMENIHSETYSLLIDTYIKEPSQR 178
>gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
Length = 529
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 150/266 (56%), Gaps = 67/266 (25%)
Query: 57 TNNLQQSKLSDSPIK-------DKST-----------LKQVSAPVQENVET--------- 89
++L++ K++DSPIK DK LK+V + ET
Sbjct: 133 ASSLEKLKMNDSPIKPLKLDHADKENVPVSSHVAEPELKKVEIEASKPAETQVVKPKTPK 192
Query: 90 -----EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------- 133
EPLL++NP+RFV+FPI+Y++IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 193 ELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWNNRLNDDE 252
Query: 134 ----------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+ N + + E + +R Y F+I + Y +
Sbjct: 253 RFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCF-YGFQIMMENIHSETYSLLIDT 311
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I K I+T+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSGSFAS
Sbjct: 312 YIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDKDSTFAQRLVAFAAVEGIFFSGSFAS 371
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 372 IFWLKKRGLMPGLTFSNELISRDEGL 397
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L DE++FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 233 EEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 292
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q++R
Sbjct: 293 FQIMMENIHSETYSLLIDTYIKEQKQR 319
>gi|389747382|gb|EIM88561.1| hypothetical protein STEHIDRAFT_54000 [Stereum hirsutum FP-91666
SS1]
Length = 382
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 126/203 (62%), Gaps = 35/203 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+D+SK +
Sbjct: 35 EREPLLIESKRRFVLFPIQYHEIWRMYKKAEASFWTAEEIDMSKDLMDWNHRLNDNERYF 94
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E +A+ +R Y F+I + Y I
Sbjct: 95 ISHILAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSQLINSYIA 153
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ IET+PCVK+KADWALRWI D SSF ER++AFA+VEGIFFSGSFASIFW
Sbjct: 154 DPEEREFLFDAIETIPCVKRKADWALRWIEDRRSSFAERLVAFAAVEGIFFSGSFASIFW 213
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE +
Sbjct: 214 LKKRGLMPGLTFSNELISRDEGM 236
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L +E+YFISH+LAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 72 EEIDMSKDLMDWNHRLNDNERYFISHILAFFAASDGIVNENLVERFSNEVQAAEARCFYG 131
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YS LI++YI D EER
Sbjct: 132 FQIMMENIHSETYSQLINSYIADPEER 158
>gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
B05.10]
gi|347828025|emb|CCD43722.1| similar to ribonucleoside-diphosphate reductase small subunit
[Botryotinia fuckeliana]
Length = 407
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 136/222 (61%), Gaps = 35/222 (15%)
Query: 69 PIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD 128
PI ++ + V+ ++ EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+D
Sbjct: 50 PIVEEQKIVAVAPGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEID 109
Query: 129 LSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRI 161
LSK + + N + +GE + +R Y F+I
Sbjct: 110 LSKDLHDWNERLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQI 168
Query: 162 KLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVI 214
+ I Y ++ K I+T+PC+KKKADWA++WI D+ S+F +R++
Sbjct: 169 MMENIHSETYSLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQDKNSTFAQRLV 228
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFASIFWLKKRGLM GLTFSNELISRDE L
Sbjct: 229 AFAAVEGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGL 270
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 106 EEIDLSKDLHDWNERLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 165
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q ++
Sbjct: 166 FQIMMENIHSETYSLLIDTYIKEQSQK 192
>gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR]
gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
capsulatus H143]
gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
capsulatus H88]
Length = 413
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 127/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP RFV+FP++Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 79 EPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDERYFIS 138
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + +GE + +R Y F+I + Y + I
Sbjct: 139 HVLAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQIMMENIHSETYSLLIDTYIKEP 197
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSGSFASIFWLK
Sbjct: 198 KQRTYLFDAIETIPCIRKKADWAIRWIEDKDSTFAQRLVAFAAVEGIFFSGSFASIFWLK 257
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 258 KRGLMPGLTFSNELISRDEGL 278
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 114 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 173
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 174 FQIMMENIHSETYSLLIDTYIKEPKQR 200
>gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
[Pediculus humanus corporis]
gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
[Pediculus humanus corporis]
Length = 304
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 126/204 (61%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N E EPLL++N +RFVIFPI++ DIW MYKKAEASFWT EEVDLSK +
Sbjct: 28 NKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHWERLKPSERH 87
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + S +R Y F+I + Y + I
Sbjct: 88 FISHVLAFFAASDGIVNENLVERFSQEVQVSEARC-FYGFQIAMENVHSEMYSLLIDTYI 146
Query: 180 TGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
IETMPCVKKKADWAL+WI+ + ++F ERV+AFA+VEGIFFSGSFA+IF
Sbjct: 147 KNPTEKHFLFNAIETMPCVKKKADWALKWISHKTATFAERVVAFAAVEGIFFSGSFAAIF 206
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 207 WLKKRGLMPGLTFSNELISRDEGL 230
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW +L E++FISHVLAFFAASDGIVNENLVERF+QEVQ++EARCFYGF
Sbjct: 67 EEVDLSKDLEHWERLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYIK+ E+
Sbjct: 127 QIAMENVHSEMYSLLIDTYIKNPTEK 152
>gi|392568085|gb|EIW61259.1| ribonucleotide reductase small subunit [Trametes versicolor
FP-101664 SS1]
Length = 410
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 139/240 (57%), Gaps = 35/240 (14%)
Query: 51 NTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDI 110
N + D + + PI S ++ V EPLL ++ RRFV+FPIQY +I
Sbjct: 43 NIIDDARRSESPESDDEQPIASSSRERRWVGEVDLPEHMEPLLIESKRRFVLFPIQYHEI 102
Query: 111 WKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIRALK 143
W+MYKKAEASFWTAEE+DLSK + + N +
Sbjct: 103 WQMYKKAEASFWTAEEMDLSKDMHDWNNRLTNDERHFVSHVLAFFAASDGIVNENLVERF 162
Query: 144 TGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKAD 196
+ E +A+ +R Y F+I + Y + I + I+T+PC+KKKAD
Sbjct: 163 SNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDPQERERLFDAIDTIPCIKKKAD 221
Query: 197 WALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WALRWI+D+ S+F ER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 222 WALRWISDKESAFSERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 281
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 71/81 (87%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D+ WN +LT DE++F+SHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 123 KDMHDWNNRLTNDERHFVSHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMME 182
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD +ER
Sbjct: 183 NIHSETYSLLIDTYIKDPQER 203
>gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans
CBS 112818]
Length = 408
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 141/231 (61%), Gaps = 42/231 (18%)
Query: 60 LQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEA 119
++ SK +++ + T K++ A EPLL++NP+RFV+FPI+Y++IW+MYKKAEA
Sbjct: 54 IEASKPAETQVVKPKTPKELEA-------EEPLLQENPQRFVLFPIKYREIWQMYKKAEA 106
Query: 120 SFWTAEEVDLSKVV---------------------------VTNFEIRALKTGEEKASHS 152
SFWTAEE+DLSK + + N + + E + +
Sbjct: 107 SFWTAEEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEA 166
Query: 153 RNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADE 205
R Y F+I + Y + I K I+T+PC++KKADWA+RWI D+
Sbjct: 167 RCF-YGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDK 225
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
S+F +R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 226 NSTFSQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L DE++FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q++R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEQKQR 198
>gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
OR74A]
gi|30316285|sp|Q9C167.2|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa]
gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
OR74A]
Length = 410
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 136/228 (59%), Gaps = 46/228 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL +NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 77 EPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFIS 136
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
+ N + +GE + +R Y F+I + I Y +
Sbjct: 137 HILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKEP 195
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ I+T+PC++KKADWALRWI D++S+F +R++AFA+VEGIFFSG+FASIFWLK
Sbjct: 196 SQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAFAAVEGIFFSGAFASIFWLK 255
Query: 236 KRGLMPGLTFSNELISRDEDL---------SHWNKLTRDEKYFISHVL 274
KRGLMPGLTFSNELISRDE L SH N R K I ++
Sbjct: 256 KRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN--NRPSKQLIQEII 301
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEK+FISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 112 EEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEPSQR 198
>gi|336469285|gb|EGO57447.1| small subunit of ribonucleotide reductase [Neurospora tetrasperma
FGSC 2508]
gi|350291081|gb|EGZ72295.1| small subunit of ribonucleotide reductase [Neurospora tetrasperma
FGSC 2509]
Length = 410
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 136/228 (59%), Gaps = 46/228 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL +NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 77 EPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFIS 136
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
+ N + +GE + +R Y F+I + I Y +
Sbjct: 137 HILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKEP 195
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ I+T+PC++KKADWALRWI D++S+F +R++AFA+VEGIFFSG+FASIFWLK
Sbjct: 196 SQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAFAAVEGIFFSGAFASIFWLK 255
Query: 236 KRGLMPGLTFSNELISRDEDL---------SHWNKLTRDEKYFISHVL 274
KRGLMPGLTFSNELISRDE L SH N R K I ++
Sbjct: 256 KRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN--NRPSKQLIQEII 301
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEK+FISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 112 EEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEPSQR 198
>gi|367026740|ref|XP_003662654.1| hypothetical protein MYCTH_68292 [Myceliophthora thermophila ATCC
42464]
gi|347009923|gb|AEO57409.1| hypothetical protein MYCTH_68292 [Myceliophthora thermophila ATCC
42464]
Length = 414
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 150/263 (57%), Gaps = 41/263 (15%)
Query: 28 VNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENV 87
V LDF S + N + TL+ + Q + D K ++ V+ ++
Sbjct: 24 VKKLDFSSSN---KENASFDADLATLEAEIDANHQKSVMD---KKEAPKPSVAPTIKPEE 77
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 78 ADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKYF 137
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKV 173
+ N + +GE + +R Y F+I + I Y
Sbjct: 138 ISHILAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQIMMENIHSETYSLLIDTYIK 196
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ + IET+P ++KKADWALRWIAD+ S+F +R++AFA+VEGIFFSG+FASIFW
Sbjct: 197 EPAQRSHLFNAIETIPAIRKKADWALRWIADKKSTFAQRLVAFAAVEGIFFSGAFASIFW 256
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 257 LKKRGLMPGLTFSNELISRDEGL 279
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 115 EEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYG 174
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 175 FQIMMENIHSETYSLLIDTYIKEPAQR 201
>gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans]
Length = 406
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 153/283 (54%), Gaps = 48/283 (16%)
Query: 8 FTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSD 67
TP S + ++ + V L+F + G P N + D+ ++
Sbjct: 5 LTPSKQAASSLENLKMNDSPVKKLNFEAAGKENAP------VSNPMVDVPATKPATEKPV 58
Query: 68 SPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
P K +K + A EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+
Sbjct: 59 EPSKAALDVKAIEA-------NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEI 111
Query: 128 DLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFR 160
DLSK + + N + +GE + +R Y F+
Sbjct: 112 DLSKDLHDWNNRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCF-YGFQ 170
Query: 161 IKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERV 213
I + Y + I K I+T+PC++KKADWA++WI D+ S+F +R+
Sbjct: 171 IMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQDKESTFAQRL 230
Query: 214 IAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 231 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFIS VLAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 109 EEIDLSKDLHDWNNRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+H+E YSLLIDTYIK+ ++R
Sbjct: 169 FQIMIENIHAETYSLLIDTYIKEPKQR 195
>gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8]
[Aspergillus nidulans FGSC A4]
Length = 406
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 153/283 (54%), Gaps = 48/283 (16%)
Query: 8 FTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSD 67
TP S + ++ + V L+F + G P N + D+ ++
Sbjct: 5 LTPSKQAASSLENLKMNDSPVKKLNFEAAGKENAP------VSNPMVDVPATKPATEKPV 58
Query: 68 SPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
P K +K + A EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+
Sbjct: 59 EPSKAALDVKAIEA-------NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEI 111
Query: 128 DLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFR 160
DLSK + + N + +GE + +R Y F+
Sbjct: 112 DLSKDLHDWNNRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCF-YGFQ 170
Query: 161 IKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERV 213
I + Y + I K I+T+PC++KKADWA++WI D+ S+F +R+
Sbjct: 171 IMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQDKESTFAQRL 230
Query: 214 IAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 231 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFIS VLAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 109 EEIDLSKDLHDWNNRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+H+E YSLLIDTYIK+ ++R
Sbjct: 169 FQIMIENIHAETYSLLIDTYIKEPKQR 195
>gi|358397948|gb|EHK47316.1| hypothetical protein TRIATDRAFT_154508 [Trichoderma atroviride IMI
206040]
Length = 418
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 137/220 (62%), Gaps = 36/220 (16%)
Query: 72 DKSTLKQVSA-PVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
DKS K +A ++ + EP+L++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLS
Sbjct: 64 DKSETKPTAALTIKPDEIDEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLS 123
Query: 131 KVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
K + + N + +GE + +R Y F+I +
Sbjct: 124 KDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMM 182
Query: 164 APGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
I Y + + IET+PC++KKADWA++WI D+ SSF +R++AF
Sbjct: 183 ENIHSETYSLLIDTYVKEHSQRNYLFNAIETIPCIRKKADWAIKWIQDKDSSFAQRLVAF 242
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 243 AAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 282
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 118 EEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 177
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+K+ +R
Sbjct: 178 FQIMMENIHSETYSLLIDTYVKEHSQR 204
>gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 410
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 133/220 (60%), Gaps = 36/220 (16%)
Query: 72 DKSTLKQVSAP-VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
D +K AP ++ EPLL++NP RFV+FPI+Y D+W+MYKKAEASFWTAEE+DLS
Sbjct: 53 DDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLS 112
Query: 131 KVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
K + + N + + E + +R Y F+I +
Sbjct: 113 KDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCF-YGFQIMM 171
Query: 164 APGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAF 216
Y + I+ + IE +PC++KKADWALRWI+D+ S+F R++AF
Sbjct: 172 ENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWISDKNSTFANRLVAF 231
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 232 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 271
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 107 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYG 166
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYI D +R
Sbjct: 167 FQIMMENVHSETYSLLIDTYISDTRQR 193
>gi|378726205|gb|EHY52664.1| ribonucleoside-diphosphate reductase small chain [Exophiala
dermatitidis NIH/UT8656]
Length = 417
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 136/228 (59%), Gaps = 44/228 (19%)
Query: 72 DKSTLKQVSAP---------VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
+K T+ +V+AP ++E EP+L++NP RFV+FPI+Y +IW MYKKAEASFW
Sbjct: 55 EKPTVSEVNAPAEGPKVAPTIKELEADEPILQENPHRFVLFPIKYHEIWNMYKKAEASFW 114
Query: 123 TAEEVDLSKVV---------------------------VTNFEIRALKTGEEKASHSRNE 155
TAEEVDLSK + + N + +GE + +R
Sbjct: 115 TAEEVDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLLERFSGEVQIPEARCF 174
Query: 156 PYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASS 208
Y F+I + Y + I K I+T+PC++KKADWAL+WI D S+
Sbjct: 175 -YGFQIMIENIHSEMYSLLIDTYIKDNKQKTYLFDAIDTIPCIRKKADWALKWICDHEST 233
Query: 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +R++AFA+VEGIFFSGSFASIFWLK +GLMPGLTFSNELISRDE +
Sbjct: 234 FAQRLVAFAAVEGIFFSGSFASIFWLKSKGLMPGLTFSNELISRDEGM 281
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +DL W N+L DE+YFISHVLAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 117 EEVDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLLERFSGEVQIPEARCFYG 176
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSEMYSLLIDTYIKD +++
Sbjct: 177 FQIMIENIHSEMYSLLIDTYIKDNKQK 203
>gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium
dendrobatidis JAM81]
Length = 336
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 128/203 (63%), Gaps = 33/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT----------N 136
V+ EP+L +PRR V+FPI+Y +W+MYKKAEASFWTAEEVDLSK +
Sbjct: 12 VQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDWEERLTDDERY 71
Query: 137 FEIRAL-----------KTGEEKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKIT 180
F R L + E+ S + P Y F+I + Y + I
Sbjct: 72 FISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHSEMYSLLIDTYIK 131
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K I+T+PC++KKADWALRWI+D+ SSFGER++AFA+VEGIFFSGSFASIFW
Sbjct: 132 DRKERAFLFDAIDTVPCIRKKADWALRWISDKKSSFGERLVAFAAVEGIFFSGSFASIFW 191
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 192 LKKRGLMPGLTFSNELISRDEGL 214
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W +LT DE+YFIS VLAFFAASDGIVNENLVERF+Q+V I EAR FY
Sbjct: 50 EEVDLSKDTLDWEERLTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYD 109
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSEMYSLLIDTYIKD++ER
Sbjct: 110 FQIMIENIHSEMYSLLIDTYIKDRKER 136
>gi|72008642|ref|XP_780110.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 412
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 123/204 (60%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N E EPLLR+N RRFVIFPIQY DIW+ YKKAEASFWTAEEVDLSK +
Sbjct: 84 NKEDEPLLRENARRFVIFPIQYHDIWQFYKKAEASFWTAEEVDLSKDLDHWANLKDEERH 143
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + + E + + +R Y F+I + Y + I
Sbjct: 144 FISHVLAFFAASDGIVNENLVERFSQEVQVAEARC-FYGFQIAIENIHSEMYSLLIDTYI 202
Query: 180 TGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ET+PCV KKA WAL WI +++ FG R++AFA+VEGIFFSGSFA+IF
Sbjct: 203 KDSVQRDFLFNAVETLPCVTKKAQWALNWIGSDSADFGTRIVAFAAVEGIFFSGSFAAIF 262
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 263 WLKKRGLMPGLTFSNELISRDEGL 286
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L +E++FISHVLAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 123 EEVDLSKDLDHWANLKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFYGF 182
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTYIKD +R
Sbjct: 183 QIAIENIHSEMYSLLIDTYIKDSVQR 208
>gi|429863484|gb|ELA37935.1| ribonucleotide reductase small subunit [Colletotrichum
gloeosporioides Nara gc5]
Length = 413
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 135/223 (60%), Gaps = 40/223 (17%)
Query: 73 KSTLKQVSAPV-----QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
+ + KQ APV +E EPLL++N +RFV+FPI+Y +IW+MYKKAEASFWTAEE+
Sbjct: 55 EESTKQQEAPVVAPGIKEEEMDEPLLQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEI 114
Query: 128 DLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFR 160
DLSK + + N + +GE + +R Y F+
Sbjct: 115 DLSKDLHDWNNKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARC-FYGFQ 173
Query: 161 IKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERV 213
I + I Y + + I+T+PC++KKADWALRWI D S+F +R+
Sbjct: 174 IMMENIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALRWITDTKSTFAQRL 233
Query: 214 IAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+AFA+VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 234 VAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN K+ DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDLHDWNNKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEPAQR 198
>gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
acridum CQMa 102]
Length = 411
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 78 EPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKYFIS 137
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
+ N + +GE + +R Y F+I + I Y +
Sbjct: 138 HILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKEN 196
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ I+T+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSG+FASIFWLK
Sbjct: 197 AQRTYLFNAIDTIPCIRKKADWAIRWIQDKESTFAQRLVAFAAVEGIFFSGAFASIFWLK 256
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 257 KRGLMPGLTFSNELISRDEGL 277
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 113 EEIDLSKDLHDWNNRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 172
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 173 FQIMMENIHSETYSLLIDTYIKENAQR 199
>gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
Length = 409
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 135/226 (59%), Gaps = 34/226 (15%)
Query: 65 LSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
+ D P ++ V+ ++E EPLL++NP RFV+FPI+Y D+W+MYKKAEASFWTA
Sbjct: 46 IPDLPEEEPVAKTGVAPTIKEEEAHEPLLQENPNRFVLFPIKYHDVWQMYKKAEASFWTA 105
Query: 125 EEVDLSK---------------VVVTNFEIRALKTG-------EEKASHSRNEP-----Y 157
EE+DLSK + A G +E+ S P Y
Sbjct: 106 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVDERFSSEVQIPEARCFY 165
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFG 210
F+I + Y + I+ + I+ +PC++KKADWAL+WI+D+ S+F
Sbjct: 166 GFQIMMENIHSETYSLLIDTYISEPRQRTYLFNAIDNIPCIRKKADWALKWISDKNSTFA 225
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 226 NRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 271
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 71/88 (80%), Gaps = 2/88 (2%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLV-ERFTQEVQITEARCFY 305
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLV ERF+ EVQI EARCFY
Sbjct: 106 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVDERFSSEVQIPEARCFY 165
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI MEN+HSE YSLLIDTYI + +R
Sbjct: 166 GFQIMMENIHSETYSLLIDTYISEPRQR 193
>gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
Length = 377
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 130/227 (57%), Gaps = 33/227 (14%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
S S P S S V E EPLLR++ RRFV+FPIQY DIW MYK+A+ASFW
Sbjct: 35 SSASPVPCVADSLAGAASETVLIRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFW 94
Query: 123 TAEEVDLS------------------KVVVTNFEIRALKTGEEKASHSRNEP-------- 156
T+EE+ L+ K V+ F E NE
Sbjct: 95 TSEEITLAYDMRDWTERLDDNERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCF 154
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I + IET+PC+K+KADWALRWI+D++S+F
Sbjct: 155 YGFQIMMENIHSETYSLLIDTYIKDPQERDHLFAAIETIPCIKRKADWALRWISDKSSTF 214
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ER++AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 215 AERLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGM 261
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
++E I+ D+ W +L +E+ FI HVLAFFAASDGIVNENLVERF+ EVQ EARCF
Sbjct: 95 TSEEITLAYDMRDWTERLDDNERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCF 154
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQI MEN+HSE YSLLIDTYIKD +ER
Sbjct: 155 YGFQIMMENIHSETYSLLIDTYIKDPQER 183
>gi|339246545|ref|XP_003374906.1| ribonucleotide reductase R2 subunit [Trichinella spiralis]
gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis]
Length = 366
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 133/231 (57%), Gaps = 34/231 (14%)
Query: 58 NNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKA 117
+N++ KL+ S D +T + A +N E EPLLR NP+RFV+ P++Y DIW MYKKA
Sbjct: 17 DNVENGKLT-SKHDDPTTPMEQDAAAIDNCE-EPLLRSNPKRFVLLPLEYPDIWAMYKKA 74
Query: 118 EASFWTAEEVD------------------LSKVVV-------TNFEIRALKTGEEKASHS 152
EASFWT EEVD +S V+ FE + +E
Sbjct: 75 EASFWTVEEVDLRKDANDWAKLNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTE 134
Query: 153 RNEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADE 205
Y F+I + Y + I IET+PCVKKKADWALRWI D
Sbjct: 135 ARFFYGFQIAIENVHSEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWIGDR 194
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
S F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 195 QSPFCERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 245
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D + W KL +DEK+FISHVLAFFAASDGIV ENLVERF+QE+Q+TEAR FYGF
Sbjct: 82 EEVDLRKDANDWAKLNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGF 141
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVHSEMYSLLIDTYI+D ER
Sbjct: 142 QIAIENVHSEMYSLLIDTYIRDPVER 167
>gi|408391189|gb|EKJ70571.1| hypothetical protein FPSE_09324 [Fusarium pseudograminearum CS3096]
Length = 392
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 137/223 (61%), Gaps = 35/223 (15%)
Query: 68 SPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
+ I ++S ++ V + E EP+L++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+
Sbjct: 38 TKIVEESKKEESKTVVSKAEEDEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEI 97
Query: 128 DLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFR 160
DLSK + + N + +GE + +R Y F+
Sbjct: 98 DLSKDLHDWNNRLTSDEQYFISHILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQ 156
Query: 161 IKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERV 213
I + I Y + ++T+PC++KKADWA+RWI D+ SSF +R+
Sbjct: 157 IMMENIHSETYSLLIDTYIKDPAQRTYLFNAVDTIPCIRKKADWAIRWIQDKNSSFAQRL 216
Query: 214 IAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+AFA+VEGIFFSG+FASIFWLKKRGLMPGL+FSNELISRDE L
Sbjct: 217 VAFAAVEGIFFSGAFASIFWLKKRGLMPGLSFSNELISRDEGL 259
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +LT DE+YFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 95 EEIDLSKDLHDWNNRLTSDEQYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 154
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD +R
Sbjct: 155 FQIMMENIHSETYSLLIDTYIKDPAQR 181
>gi|361127540|gb|EHK99507.1| putative Ribonucleoside-diphosphate reductase small chain [Glarea
lozoyensis 74030]
Length = 439
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 103 EPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDERYFIS 162
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
+ N + +GE + +R Y F+I + I Y ++
Sbjct: 163 HVLAFFAASDGIVNENLLERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYVKEQ 221
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IET+PC+KKKADWA+RWI D+ S+F +R++AFA++EGIFFSGSFASIFWLK
Sbjct: 222 AQRTYLFNAIETIPCIKKKADWAVRWIQDKNSTFAQRLVAFAAIEGIFFSGSFASIFWLK 281
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLM GLTFSNELISRDE +
Sbjct: 282 KRGLMAGLTFSNELISRDEGM 302
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 138 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSGEVQIPEARCFYG 197
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+K+Q +R
Sbjct: 198 FQIMMENIHSETYSLLIDTYVKEQAQR 224
>gi|449302142|gb|EMC98151.1| hypothetical protein BAUCODRAFT_66775 [Baudoinia compniacensis UAMH
10762]
Length = 421
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 39/226 (17%)
Query: 69 PIKDKSTLKQ----VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
P+ ++ ++Q V+ ++E+ +EP+L++NP+RFV+FPI+Y +IW+MYKKAEASFWTA
Sbjct: 56 PVLEEVPVQQPELTVAEGIKEDEASEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTA 115
Query: 125 EEVDLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPY 157
EE+DLSK + + N + +GE + +R Y
Sbjct: 116 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARC-FY 174
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFG 210
F+I + Y + I+ K I+ +PC++KKADWALRWI+D+ S+F
Sbjct: 175 GFQIMMENIHSETYSLLIDTYISEPKQRQYLFNAIDNIPCIRKKADWALRWISDKNSTFA 234
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
R+IAFA+VEGIFFSGSFASIFWLKKRGLM GLTFSNELISRDE +
Sbjct: 235 CRLIAFAAVEGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGM 280
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 98/156 (62%), Gaps = 6/156 (3%)
Query: 179 ITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRG 238
I G +E +P + + A DEAS E ++ + F + I+ + K+
Sbjct: 52 IKGIPVLEEVPVQQPELTVAEGIKEDEAS---EPILQENPQRFVLFPIKYHEIWQMYKKA 108
Query: 239 LMPGLTFSNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQ 297
++ E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQ
Sbjct: 109 --EASFWTAEEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQ 166
Query: 298 ITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
I EARCFYGFQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 167 IPEARCFYGFQIMMENIHSETYSLLIDTYISEPKQR 202
>gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1]
Length = 399
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 146/251 (58%), Gaps = 38/251 (15%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKL---SDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRR 99
N+N+ P L T N + L +D+ +++ V + E EP+L++NP+R
Sbjct: 17 NLNMESPVKKLNFGTANKENEPLNQTTDTAELKTKIVEESKTVVSKAEEDEPILQENPQR 76
Query: 100 FVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------------------- 133
FV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 77 FVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLTSDEQYFISHILAFFAASD 136
Query: 134 -VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTI 185
+ N + +GE + +R Y F+I + I Y + +
Sbjct: 137 GIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKDPAQRTYLFNAV 195
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
+T+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSG+FASIFWLKKRGLMPGL+F
Sbjct: 196 DTIPCIRKKADWAIRWIQDKNSTFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLSF 255
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 256 SNELISRDEGL 266
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +LT DE+YFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 102 EEIDLSKDLHDWNNRLTSDEQYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 161
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD +R
Sbjct: 162 FQIMMENIHSETYSLLIDTYIKDPAQR 188
>gi|354484403|ref|XP_003504377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Cricetulus griseus]
Length = 354
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 122/199 (61%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 35 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKHFISH 94
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
V+ F E E+ S P Y F+I + Y + I K
Sbjct: 95 VLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 154
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+ EG FFSGSFA+IFWLKKR
Sbjct: 155 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAGEGGFFSGSFAAIFWLKKR 214
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 215 GLMPGLTFSNELISRDEGL 233
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEK+FISHVLAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 68 TAEEVDLSKDLPHWNKLKSDEKHFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFY 127
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 128 GFQILIENVHSEMYSLLIDTYIRDPKKR 155
>gi|440637324|gb|ELR07243.1| ribonucleoside-diphosphate reductase small subunit [Geomyces
destructans 20631-21]
Length = 412
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 133/222 (59%), Gaps = 35/222 (15%)
Query: 69 PIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD 128
PI + L ++ ++ EPLL+ NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+D
Sbjct: 55 PIVAEPDLSLIAPTLKPEEADEPLLQSNPNRFVLFPIKYHEIWQMYKKAEASFWTAEEID 114
Query: 129 LSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRI 161
LSK + + N + + E + +R Y F+I
Sbjct: 115 LSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSSEVQIPEARCF-YGFQI 173
Query: 162 KLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVI 214
+ I Y ++ + IET+PC+KKKADWA+RWI D+ S+F +R++
Sbjct: 174 MIENIHAETYSLLIDTYIKEQAQRTYLFNAIETIPCIKKKADWAVRWIQDKDSTFAQRLV 233
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFASIFWLKKRGLM GLTFSNELISRDE L
Sbjct: 234 AFAAVEGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGL 275
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 111 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLLERFSSEVQIPEARCFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+H+E YSLLIDTYIK+Q +R
Sbjct: 171 FQIMIENIHAETYSLLIDTYIKEQAQR 197
>gi|407916476|gb|EKG09844.1| Ribonucleotide reductase [Macrophomina phaseolina MS6]
Length = 407
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 155/284 (54%), Gaps = 50/284 (17%)
Query: 8 FTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSD 67
TP S D +++ + LDF W + ++ P + DL + SD
Sbjct: 5 LTPSKKAASAIADFSMNDSPAKKLDFSGTDDWADDSVAR--PIKGIPDLPED------SD 56
Query: 68 SPIKDKSTLKQVSAPVQENVET-EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEE 126
+K ST AP + E EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE
Sbjct: 57 D-VKHPST-----APTIKKEEAHEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEE 110
Query: 127 VDLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLF 159
+DLSK + + N + + E + +R Y F
Sbjct: 111 IDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCF-YGF 169
Query: 160 RIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGER 212
+I + Y + I+ + I+ +PC+KKKADWALRWI D+ S+F R
Sbjct: 170 QIMMENIHSETYSLLIDTYISEPRQRNYLFNAIDNIPCIKKKADWALRWICDKNSTFASR 229
Query: 213 VIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+IAFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 230 LIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 273
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 109 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + +R
Sbjct: 169 FQIMMENIHSETYSLLIDTYISEPRQR 195
>gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980]
gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 407
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 134/222 (60%), Gaps = 35/222 (15%)
Query: 69 PIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD 128
PI + V+ ++ EPLL++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+D
Sbjct: 50 PIVKEEKAVTVAPGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEID 109
Query: 129 LSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRI 161
LSK + + N + +GE + +R Y F+I
Sbjct: 110 LSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQI 168
Query: 162 KLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVI 214
+ I Y ++ K I+T+PC+KKKADWA++WI D+ S+F +R++
Sbjct: 169 MMENIHSETYSLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQDKNSTFAQRLV 228
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFASIFWLKKRGLM GLTFSNELISRDE L
Sbjct: 229 AFAAVEGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGL 270
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 106 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 165
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q ++
Sbjct: 166 FQIMMENIHSETYSLLIDTYIKEQAQK 192
>gi|403418121|emb|CCM04821.1| predicted protein [Fibroporia radiculosa]
Length = 412
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 125/201 (62%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWT EEVDLSK
Sbjct: 85 EPLLMESKRRFVLFPIQYHEIWQMYKKAEASFWTVEEVDLSKDFHDWNNRLSDNERHFIS 144
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 145 HVLAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDP 203
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IET+PC+KKKADWALRWI+D+ SF ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 204 QQREHLFDAIETIPCIKKKADWALRWISDKGCSFAERLVAFAAVEGIFFSGSFASIFWLK 263
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 264 KRGLMPGLTFSNELISRDEGM 284
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D WN +L+ +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 120 EEVDLSKDFHDWNNRLSDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYG 179
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD ++R
Sbjct: 180 FQIMMENIHSETYSLLIDTYIKDPQQR 206
>gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
Length = 414
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 127/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL+++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 83 EPLLKESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNKLNDNERHFIS 142
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 143 HVLAFFAASDGIVNENLLERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDP 201
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
++T+PC+KKKADWAL WI+D+ S+F ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 202 AQRDYLFDAVDTIPCIKKKADWALTWISDQKSTFAERLVAFAAVEGIFFSGSFASIFWLK 261
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 262 KRGLMPGLTFSNELISRDEGM 282
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL WN KL +E++FISHVLAFFAASDGIVNENL+ERF+ EVQ EARCFYGFQI ME
Sbjct: 124 KDLHDWNNKLNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMME 183
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD +R
Sbjct: 184 NIHSETYSLLIDTYIKDPAQR 204
>gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis]
Length = 352
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 126/202 (62%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD------------------L 129
E EPLL++NPRRFVIFPIQY DIWKMYK+A+ASFWT EEVD +
Sbjct: 3 EGEPLLQENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHWDSLKPEEKHFI 62
Query: 130 SKVV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
S V+ + N + E + +R+ Y +++ + Y + I
Sbjct: 63 SHVLAFFAASDGIVNENLVQRFCQEVQVPEARSF-YSYQVLIESVHSEMYSLLINTYIRD 121
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K I TMPCVK+KADWAL+WI D S+FGER++AFA+VEGIFFSGSFASI+WL
Sbjct: 122 LKEREHLFNAIYTMPCVKRKADWALQWINDSTSTFGERLVAFAAVEGIFFSGSFASIYWL 181
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLT+SNELISRDE L
Sbjct: 182 KKRGLMPGLTYSNELISRDEGL 203
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+HW+ L +EK+FISHVLAFFAASDGIVNENLV+RF QEVQ+ EAR FY +
Sbjct: 40 EEVDLSKDLAHWDSLKPEEKHFISHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSY 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ +E+VHSEMYSLLI+TYI+D +ER
Sbjct: 100 QVLIESVHSEMYSLLINTYIRDLKER 125
>gi|449549663|gb|EMD40628.1| hypothetical protein CERSUDRAFT_121331 [Ceriporiopsis subvermispora
B]
Length = 425
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL D+ RRFV+FPIQY +IW+ YKKAEASFWTAEE+DLS
Sbjct: 95 EPLLMDSKRRFVLFPIQYHEIWRFYKKAEASFWTAEEIDLSHDHWDWEHKLNDNERWFIS 154
Query: 132 -VV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
V+ + N + + E +A+ +R Y F+I + I Y ++
Sbjct: 155 HVLAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKEQ 213
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IET+PC+KKKADWALRWI+D+ S+F ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 214 HEREHLFDAIETVPCIKKKADWALRWISDKQSTFAERLVAFAAVEGIFFSGSFASIFWLK 273
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 274 KRGLMPGLTFSNELISRDEGM 294
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 71/84 (84%), Gaps = 5/84 (5%)
Query: 255 DLSH--WN---KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
DLSH W+ KL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI
Sbjct: 133 DLSHDHWDWEHKLNDNERWFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQI 192
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
MEN+HSE YSLLIDTYIK+Q ER
Sbjct: 193 MMENIHSETYSLLIDTYIKEQHER 216
>gi|390601337|gb|EIN10731.1| beta subunit of ribonucleotide reductase [Punctularia
strigosozonata HHB-11173 SS5]
Length = 426
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 126/203 (62%), Gaps = 35/203 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 97 DQEPLLMESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRLNDNERHF 156
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 157 ISHVLAFFAASDGIVNENLLERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIK 215
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
IET+PCVK+KADWA+RWI D+ S F ER++AFA+VEGIFFSGSFASIFW
Sbjct: 216 DPAQRDYLFDAIETIPCVKRKADWAIRWINDQRSGFAERLVAFAAVEGIFFSGSFASIFW 275
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE +
Sbjct: 276 LKKRGLMPGLTFSNELISRDEGM 298
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +DL WN +L +E++FISHVLAFFAASDGIVNENL+ERF+ EVQ EARCFYG
Sbjct: 134 EEMDLSKDLHDWNNRLNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYG 193
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD +R
Sbjct: 194 FQIMMENIHSETYSLLIDTYIKDPAQR 220
>gi|402226169|gb|EJU06229.1| ribonucleotide reductase small subunit [Dacryopinax sp. DJM-731
SS1]
Length = 421
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 141/247 (57%), Gaps = 59/247 (23%)
Query: 68 SPIKDKS---TLKQVSAPVQENV---------------------ETEPLLRDNPRRFVIF 103
+P+KDK+ LK AP QE + EPLL+ RRFV+F
Sbjct: 32 TPLKDKAFMEKLKAAGAPAQEAESEEEPLEEYRKRFVGDLECEEKDEPLLKSTQRRFVLF 91
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------------------VTN 136
PIQY +IW+MYKKAEASFWTAEE+DLSK + + N
Sbjct: 92 PIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWQNRLNNNERHFISHVLAFFAASDGIVN 151
Query: 137 FEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMP 189
+ + E +A+ +R Y F+I + Y + I + I+T+P
Sbjct: 152 ENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDAEQREYLFDAIDTIP 210
Query: 190 CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 249
C+K+KADWAL+WI+D+ S+F ER++AFA+VEGIFFSGSFA+IFW+KKRGLMPGLTFSNEL
Sbjct: 211 CIKRKADWALKWISDKRSTFAERLVAFAAVEGIFFSGSFAAIFWMKKRGLMPGLTFSNEL 270
Query: 250 ISRDEDL 256
ISRDE +
Sbjct: 271 ISRDEGM 277
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +DL W N+L +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 113 EEMDLSKDLHDWQNRLNNNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYG 172
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD E+R
Sbjct: 173 FQIMMENIHSETYSLLIDTYIKDAEQR 199
>gi|398391450|ref|XP_003849185.1| hypothetical protein MYCGRDRAFT_110972 [Zymoseptoria tritici
IPO323]
gi|339469061|gb|EGP84161.1| hypothetical protein MYCGRDRAFT_110972 [Zymoseptoria tritici
IPO323]
Length = 415
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 132/207 (63%), Gaps = 35/207 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------- 133
+E++E EP+L++N +RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 72 KEDLEDEPILQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNKRLNDD 131
Query: 134 -----------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKG 176
+ N + +GE + +R Y F+I + Y +
Sbjct: 132 ERFFISHVLAFFAASDGIVNENLIERFSGEVQIPEARCF-YGFQIMMENIHSETYSLLID 190
Query: 177 GKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I+ K I+ +PC++KKADWALRWI+D+ S+F R+IAFA++EGIFFSGSFA
Sbjct: 191 TYISEPKQRTYLFNAIDNIPCIRKKADWALRWISDKNSTFACRLIAFAAIEGIFFSGSFA 250
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 251 SIFWLKKRGLMPGLTFSNELISRDEGM 277
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENL+ERF+ EVQI EARCFYG
Sbjct: 113 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLIERFSGEVQIPEARCFYG 172
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 173 FQIMMENIHSETYSLLIDTYISEPKQR 199
>gi|449549662|gb|EMD40627.1| hypothetical protein CERSUDRAFT_111206 [Ceriporiopsis subvermispora
B]
Length = 400
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 127/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 74 EPLLTESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRLTNDERHFVS 133
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E + + +R Y F+I + Y + I
Sbjct: 134 HVLAFFAASDGIVNENLVERFSNEVQVAEARCF-YGFQIMMENIHSETYSLLIDTYIKDP 192
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K I+T+PC+K+KADWALRWI+D+ SSF ER+IAFA+VEGIFFSGSFASIFWLK
Sbjct: 193 KQREHLFDAIDTIPCIKRKADWALRWISDKRSSFAERLIAFAAVEGIFFSGSFASIFWLK 252
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 253 KRGLMPGLTFSNELISRDEGM 273
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 4/139 (2%)
Query: 197 WALRWIAD-EASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDED 255
W RWI D + E ++ + + F + I+ + K+ ++ E + +D
Sbjct: 59 WRQRWIGDVDLPENQEPLLTESKRRFVLFPIQYHEIWQMYKKA--EASFWTAEEMDLSKD 116
Query: 256 LSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
L WN +LT DE++F+SHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYGFQI MEN+
Sbjct: 117 LHDWNNRLTNDERHFVSHVLAFFAASDGIVNENLVERFSNEVQVAEARCFYGFQIMMENI 176
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE YSLLIDTYIKD ++R
Sbjct: 177 HSETYSLLIDTYIKDPKQR 195
>gi|409080028|gb|EKM80389.1| hypothetical protein AGABI1DRAFT_113579 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198206|gb|EKV48132.1| ribonucleotide reductase beta subunit [Agaricus bisporus var.
bisporus H97]
Length = 408
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL+D+ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 81 EPLLKDSRRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWTNRMNDNERHFIS 140
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 141 HVLAFFAASDGIVNENLIERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDP 199
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IET+PC+K+KA+WAL+WI+D+ S+F ER+IAFA+VEGIFFSGSFASIFW+K
Sbjct: 200 VQRDYLFDAIETIPCIKRKAEWALKWISDKRSTFAERLIAFAAVEGIFFSGSFASIFWMK 259
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 260 KRGLMPGLTFSNELISRDEGM 280
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL W N++ +E++FISHVLAFFAASDGIVNENL+ERF+ EVQ EARCFYGFQI ME
Sbjct: 122 KDLHDWTNRMNDNERHFISHVLAFFAASDGIVNENLIERFSNEVQAAEARCFYGFQIMME 181
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD +R
Sbjct: 182 NIHSETYSLLIDTYIKDPVQR 202
>gi|453087864|gb|EMF15905.1| Ribonuc_red_sm-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 416
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 129/207 (62%), Gaps = 35/207 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------- 133
+++ E EPLL +NP+RFV+FPI+Y +IW MYKKAEASFWTAEE+DLSK +
Sbjct: 72 EDDEEVEPLLAENPQRFVLFPIKYHEIWNMYKKAEASFWTAEEIDLSKDLHDWNKRLTDD 131
Query: 134 -----------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKG 176
+ N + + E +R Y F+I + Y +
Sbjct: 132 ERFFISHVLAFFAASDGIVNENLVERFSAEVTVPEARCF-YGFQIMMENIHSETYSLLID 190
Query: 177 GKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I+ K I+ +PC+++KADWALRWI+D++S+F R+IAFA+VEGIFFSGSFA
Sbjct: 191 TYISEPKQRTYLFNAIDNIPCIRRKADWALRWISDKSSTFAMRLIAFAAVEGIFFSGSFA 250
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 251 SIFWLKKRGLMPGLTFSNELISRDEGM 277
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK LT DE++FISHVLAFFAASDGIVNENLVERF+ EV + EARCFYG
Sbjct: 113 EEIDLSKDLHDWNKRLTDDERFFISHVLAFFAASDGIVNENLVERFSAEVTVPEARCFYG 172
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 173 FQIMMENIHSETYSLLIDTYISEPKQR 199
>gi|451851899|gb|EMD65197.1| hypothetical protein COCSADRAFT_181130 [Cochliobolus sativus
ND90Pr]
Length = 410
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 131/212 (61%), Gaps = 35/212 (16%)
Query: 79 VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----- 133
V++ ++ EPLL++NP RFV+FPI+Y D+W+MYKKAEASFWTAEE+DLSK +
Sbjct: 61 VASSIKAEEAHEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNK 120
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + +R Y F+I + Y
Sbjct: 121 RLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCF-YGFQIMMENVHSETY 179
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I+ + I+ +PC++KKADWALRWI+D+ S+F R++AFA+VEGIFF
Sbjct: 180 SLLIDTYISEPRQRQYLFNAIDNIPCIRKKADWALRWISDKNSTFANRLVAFAAVEGIFF 239
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 240 SGSFASIFWLKKRGLMPGLTFSNELISRDEGM 271
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 107 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYG 166
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYI + +R
Sbjct: 167 FQIMMENVHSETYSLLIDTYISEPRQR 193
>gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97]
Length = 317
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 140/231 (60%), Gaps = 42/231 (18%)
Query: 60 LQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEA 119
++ SK +++ + T K++ A EP L++NP+RFV+FPI+Y++IW+MYKKAEA
Sbjct: 54 IEASKPAETQVVKPKTPKELEA-------EEPRLQENPQRFVLFPIKYREIWQMYKKAEA 106
Query: 120 SFWTAEEVDLSKVV---------------------------VTNFEIRALKTGEEKASHS 152
SFWTAEE+DLSK + + N + + E + +
Sbjct: 107 SFWTAEEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEA 166
Query: 153 RNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADE 205
R Y F+I + Y + I K I+T+PC++KKADWA+RWI D+
Sbjct: 167 RCF-YGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDK 225
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
S+F +R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 226 NSTFSQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 276
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L DE++FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 112 EEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q++R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEQKQR 198
>gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
Length = 410
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 133/220 (60%), Gaps = 36/220 (16%)
Query: 72 DKSTLKQVSAP-VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
D +K AP ++ EPLL++NP RFV+FPI+Y D+W+MYKKAEASFWTAEE+DLS
Sbjct: 53 DAEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLS 112
Query: 131 KVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
K + + N + + E + +R Y F+I +
Sbjct: 113 KDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCF-YGFQIMM 171
Query: 164 APGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAF 216
Y + I+ + I+ +PC++KKADWALRWI+D+ S+F R++AF
Sbjct: 172 ENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWISDKNSTFANRLVAF 231
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 232 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGM 271
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 107 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYG 166
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYI + +R
Sbjct: 167 FQIMMENVHSETYSLLIDTYISEPRQR 193
>gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
complex [Komagataella pastoris GS115]
gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
complex [Komagataella pastoris GS115]
gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Komagataella
pastoris CBS 7435]
Length = 400
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 161/300 (53%), Gaps = 62/300 (20%)
Query: 54 KDLTNNLQ----QSKLSDSPIKDKSTL-----------KQVSAPVQENVETEPLLRDNPR 98
KDLT+ LQ Q + ++P+K++S L K ++E + EPLL +N R
Sbjct: 25 KDLTSVLQAAADQKEKVNAPVKEESKLDDDHKAFLAKHKVHRHKLKEMEKDEPLLVENKR 84
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------------SKVV------ 133
RFV+FP++Y DIW+MYK+AEASFWTAEE+DL S+V+
Sbjct: 85 RFVLFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWNNRMNDNEKFFISRVLAFFAAS 144
Query: 134 --VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------T 184
+ N + + E + ++ Y F+I + Y + I K
Sbjct: 145 DGIVNENLVENFSAEVQLPEAKC-FYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNA 203
Query: 185 IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
IET+PC+K+KADWA+RWI+D+ + F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLT
Sbjct: 204 IETIPCIKEKADWAMRWISDDDALFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 263
Query: 245 FSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
FSNELI RDE L F+ + +E +VE+ E E R F
Sbjct: 264 FSNELICRDEGLH------------TDFACLLFSHLNNRASEEIVEKIITEAVEIEKRYF 311
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +EK+FIS VLAFFAASDGIVNENLVE F+ EVQ+ EA+CFYG
Sbjct: 111 EEIDLGKDLHDWNNRMNDNEKFFISRVLAFFAASDGIVNENLVENFSAEVQLPEAKCFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMMENIHSETYSLLIDTYIKDPKE 196
>gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
Length = 422
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL+++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 86 EPLLKESKRRFVLFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRMNDNERHFIS 145
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 146 HVLAFFAASDGIVNENLLERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDSYIKDP 204
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IET+PC+K+KA+WAL+WI+D+ S+F ER++AFA+VEGIFFSGSFASIFW+K
Sbjct: 205 AQREYLFDAIETIPCIKRKAEWALKWISDQESTFAERLVAFAAVEGIFFSGSFASIFWMK 264
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 265 KRGLMPGLTFSNELISRDEGM 285
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL WN ++ +E++FISHVLAFFAASDGIVNENL+ERF+ EVQ EARCFYGFQI ME
Sbjct: 127 KDLHDWNNRMNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMME 186
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLID+YIKD +R
Sbjct: 187 NIHSETYSLLIDSYIKDPAQR 207
>gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum]
gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum]
Length = 374
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 140/241 (58%), Gaps = 39/241 (16%)
Query: 50 QNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQD 109
+N L D +N+ + +DS Q ++ + E EPLL++NPRRFV+FPIQY D
Sbjct: 19 KNVLTDNKSNILVNSKADSDFPKI----QDGCNMEFDPELEPLLQENPRRFVVFPIQYPD 74
Query: 110 IWKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIRAL 142
IW YK+AEASFWT EEVDLSK + + N +
Sbjct: 75 IWDKYKQAEASFWTTEEVDLSKDLDDWKNKLNSDERYFISHVLAFFAASDGIVNENLVER 134
Query: 143 KTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKA 195
+ E + + +R Y F+I + Y + I+ + IET+PCVKKKA
Sbjct: 135 FSQEVQVTEARC-FYGFQIAIENIHSEMYSMLIETYISEPQEKEFLFNAIETLPCVKKKA 193
Query: 196 DWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDED 255
DWAL WI + ++FGER++AFA+VEGIFFSGSFASIFWLKKR LMPGLTFSNELISRDE
Sbjct: 194 DWALLWINSKNATFGERIVAFAAVEGIFFSGSFASIFWLKKRNLMPGLTFSNELISRDEG 253
Query: 256 L 256
L
Sbjct: 254 L 254
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 77/89 (86%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + +DL W NKL DE+YFISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCF
Sbjct: 88 TTEEVDLSKDLDDWKNKLNSDERYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCF 147
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYS+LI+TYI + +E+
Sbjct: 148 YGFQIAIENIHSEMYSMLIETYISEPQEK 176
>gi|451995294|gb|EMD87762.1| hypothetical protein COCHEDRAFT_1182649 [Cochliobolus
heterostrophus C5]
Length = 410
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 131/212 (61%), Gaps = 35/212 (16%)
Query: 79 VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----- 133
V++ ++ EPLL++NP RFV+FPI+Y D+W+MYKKAEASFWTAEE+DLSK +
Sbjct: 61 VASTIKPEEAHEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNK 120
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + +R Y F+I + Y
Sbjct: 121 RLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCF-YGFQIMMENVHSETY 179
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I+ + I+ +PC++KKADWALRWI+D+ S+F R++AFA+VEGIFF
Sbjct: 180 SLLIDTYISEPRQRQYLFNAIDNIPCIRKKADWALRWISDKNSTFANRLVAFAAVEGIFF 239
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 240 SGSFASIFWLKKRGLMPGLTFSNELISRDEGM 271
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 107 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYG 166
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYI + +R
Sbjct: 167 FQIMMENVHSETYSLLIDTYISEPRQR 193
>gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
Length = 347
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 134/226 (59%), Gaps = 46/226 (20%)
Query: 66 SDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAE 125
S SPI D + ++ AP + EP+L DNP+RF +FPI+Y +W+MYKKAEASFWTAE
Sbjct: 7 SSSPIVDDGS--RIKAP-----KEEPILADNPQRFCMFPIRYPRVWEMYKKAEASFWTAE 59
Query: 126 EVDLSK----------------------------VVVTNFEIRALKTGEEKASHSRNEPY 157
EVDLS+ +V+ N +R +K E + +R Y
Sbjct: 60 EVDLSQDAKHWESLTDNEKHFVSHVLAFFAASDGIVLENLAVRFMK--EIQIPEAR-AFY 116
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGKT-------IETMPCVKKKADWALRWIADEASSFG 210
F+I + Y + I + IET+PCV KKADWALRWI D + SF
Sbjct: 117 GFQIAIENIHSEMYSLLLETYIKDNEVKAKLFNAIETIPCVAKKADWALRWI-DSSQSFA 175
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 176 ERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 221
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 68/84 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D HW LT +EK+F+SHVLAFFAASDGIV ENL RF +E+QI EAR FYGF
Sbjct: 59 EEVDLSQDAKHWESLTDNEKHFVSHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGF 118
Query: 308 QIAMENVHSEMYSLLIDTYIKDQE 331
QIA+EN+HSEMYSLL++TYIKD E
Sbjct: 119 QIAIENIHSEMYSLLLETYIKDNE 142
>gi|401886060|gb|EJT50123.1| ribonucleoside-diphosphate reductase [Trichosporon asahii var.
asahii CBS 2479]
gi|406697819|gb|EKD01069.1| ribonucleoside-diphosphate reductase [Trichosporon asahii var.
asahii CBS 8904]
Length = 420
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 134/222 (60%), Gaps = 35/222 (15%)
Query: 69 PIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD 128
P D K+ ++ EPLL+++ RFV+FPI+Y++IW+MYKKA+ASFWTAEE++
Sbjct: 71 PDYDAPVEKRYVGDLECEEADEPLLKESTDRFVLFPIKYREIWQMYKKAQASFWTAEEIN 130
Query: 129 LSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPYLFRI 161
L+ + + N + GE + S ++ Y F+I
Sbjct: 131 LAPDLHDWDNKLNDNERYFIEHVLAFFAASDGIVNENLVERFCGEVQISEAKT-FYGFQI 189
Query: 162 KLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVI 214
+ Y + I + IET+PC+KKKADWALRWI+D+ SSFGER+I
Sbjct: 190 MMENIHSETYSLLIDTYIRDNARRQYLFQAIETIPCIKKKADWALRWISDQRSSFGERLI 249
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 250 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 291
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I+ DL W NKL +E+YFI HVLAFFAASDGIVNENLVERF EVQI+EA+ FYG
Sbjct: 127 EEINLAPDLHDWDNKLNDNERYFIEHVLAFFAASDGIVNENLVERFCGEVQISEAKTFYG 186
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI+D R
Sbjct: 187 FQIMMENIHSETYSLLIDTYIRDNARR 213
>gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
reesii 1704]
gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
reesii 1704]
Length = 401
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 133/214 (62%), Gaps = 36/214 (16%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--- 133
K+ +P + E EPLL++NP+RFV+FP++Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 58 KKALSPKELEAE-EPLLQENPQRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDW 116
Query: 134 ------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
+ N + +GE + +R Y F+I +
Sbjct: 117 NHRLNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQIPEARCF-YGFQIMMENIHSE 175
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K ++ +PC++KKADWA+RWI D+ S+F +R+IAFA+VEGI
Sbjct: 176 TYSLLIDTYIKEPKQRTYLFEALDNIPCIRKKADWAIRWIQDKDSTFAQRLIAFAAVEGI 235
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 236 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFIS VLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 105 EEIDLSKDLHDWNHRLNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYG 164
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 165 FQIMMENIHSETYSLLIDTYIKEPKQR 191
>gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus]
gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus]
Length = 333
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 117/203 (57%), Gaps = 33/203 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------------- 130
N+ EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S
Sbjct: 12 NLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPNEKH 71
Query: 131 --KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKV 173
K V+ F E A E + + G I Y
Sbjct: 72 FIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVK 131
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWA +WI D AS +GER++AFA+VEGIFFSGSFASIFW
Sbjct: 132 DSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAS-YGERLVAFAAVEGIFFSGSFASIFW 190
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGL 213
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT +EK+FI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPNEKHFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|389639056|ref|XP_003717161.1| ribonucleoside-diphosphate reductase small subunit [Magnaporthe
oryzae 70-15]
gi|351642980|gb|EHA50842.1| ribonucleoside-diphosphate reductase small subunit [Magnaporthe
oryzae 70-15]
Length = 412
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 133/218 (61%), Gaps = 34/218 (15%)
Query: 73 KSTLKQVSAPVQENVET-EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
K K AP + E EP+L++NP+RFV+FPI+Y ++W+MYKKAEASFWTAEE+DLSK
Sbjct: 56 KPVEKPAVAPTIKAFEMDEPILQENPQRFVLFPIRYHEVWQMYKKAEASFWTAEEIDLSK 115
Query: 132 VV------VTNFE---IRALKTGEEKASHSRNEPYLFRIKLA---PGGICRYK------- 172
+ +T+ E I + + NE + R P C Y
Sbjct: 116 DLHDWNNKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMEN 175
Query: 173 ---------VKKGGKITGGKT-----IETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
+ K T +T I+T+PC++KKADWALRWI D+ S+F R+IAFA
Sbjct: 176 IHSETYSLLIDTYIKETAQRTYLFNAIDTIPCIRKKADWALRWITDKKSTFATRLIAFAV 235
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 236 VEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN KLT DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 109 EEIDLSKDLHDWNNKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 169 FQIMMENIHSETYSLLIDTYIKETAQR 195
>gi|389747381|gb|EIM88560.1| ribonucleotide reductase small subunit [Stereum hirsutum FP-91666
SS1]
Length = 417
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 128/201 (63%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 87 EPLLMESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRLNDNERHFIS 146
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 147 HVLAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENIHSETYSLLIDTYIKDP 205
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K +ET+PCVK+KADWAL+WI+D+ ++F ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 206 KERDYLFDAVETIPCVKRKADWALKWISDKRATFAERLVAFAAVEGIFFSGSFASIFWLK 265
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELI+RDE +
Sbjct: 266 KRGLMPGLTFSNELITRDEGM 286
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 99/157 (63%), Gaps = 5/157 (3%)
Query: 180 TGGKTIETMPCVKKKA-DWALRWIAD-EASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
+ G ++ P + DW R+I D + E ++ + + F + I+ + K+
Sbjct: 54 SQGDELQVAPAEEDDVEDWRKRFIGDVDLPERMEPLLMESKRRFVLFPIQYHEIWQMYKK 113
Query: 238 GLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEV 296
++ E + +DL WN +L +E++FISHVLAFFAASDGIVNENLVERF+ EV
Sbjct: 114 A--EASFWTAEEMDLSKDLHDWNNRLNDNERHFISHVLAFFAASDGIVNENLVERFSNEV 171
Query: 297 QITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q EARCFYGFQI MEN+HSE YSLLIDTYIKD +ER
Sbjct: 172 QAAEARCFYGFQIMMENIHSETYSLLIDTYIKDPKER 208
>gi|452987065|gb|EME86821.1| hypothetical protein MYCFIDRAFT_49456 [Pseudocercospora fijiensis
CIRAD86]
Length = 418
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 137/226 (60%), Gaps = 36/226 (15%)
Query: 65 LSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
L D P K + V++ ++E EP+L++NP+RFV+FPI+Y +IW+MYKKAEASFWTA
Sbjct: 57 LPDEPEKSVAA-TSVASTIKEEEAIEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTA 115
Query: 125 EEVDLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEPY 157
EE+DLSK + + N + + E + +R Y
Sbjct: 116 EEIDLSKDLHDWNKRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQIPEARC-FY 174
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFG 210
F+I + Y + I+ K I+ +PC++KKADWALRWI+D+ S+F
Sbjct: 175 GFQIMMENIHSETYSLLIDTYISEPKQRSYLFNAIDNIPCIRKKADWALRWISDKNSTFA 234
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
R+IAFA+VEGIFFSGSFASIFWLKKRGLM GLTFSNELISRDE +
Sbjct: 235 CRLIAFAAVEGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGM 280
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 116 EEIDLSKDLHDWNKRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYG 175
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 176 FQIMMENIHSETYSLLIDTYISEPKQR 202
>gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Anolis carolinensis]
Length = 414
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 119/199 (59%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWT-----------------AEEVDLSKV 132
EPLLR NPRRFVIFPI Y DIWKMYKKA+ASFWT +EE
Sbjct: 95 EPLLRKNPRRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHWNKLKSEEKYFISH 154
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I +
Sbjct: 155 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEE 214
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMPCVKKKADWALRWI D ++FGERV+AFASVEGIFFSG+FA+IFWLKKR
Sbjct: 215 RDFLFNAIETMPCVKKKADWALRWIRDRKATFGERVVAFASVEGIFFSGAFAAIFWLKKR 274
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 275 GLMPGLTFSNELISRDEGL 293
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D HWNKL +EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 130 EEVDLSKDFPHWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 189
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYIKD EER
Sbjct: 190 QILIENVHSEMYSLLIDTYIKDPEER 215
>gi|345568467|gb|EGX51361.1| hypothetical protein AOL_s00054g431 [Arthrobotrys oligospora ATCC
24927]
Length = 402
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 132/228 (57%), Gaps = 40/228 (17%)
Query: 69 PIKDKSTLK---QVSAPVQENVETE----PLLRDNPRRFVIFPIQYQDIWKMYKKAEASF 121
P++ K+ +K AP N++ E PLL +N +RFV+FPI Y ++W+MYKKAEASF
Sbjct: 29 PVEAKAVVKVEPTPDAPAFNNLKPEEADEPLLVENKKRFVLFPINYHEVWQMYKKAEASF 88
Query: 122 WTAEEVDLSK------------------VVVTNFEIRALKTGEEKASHSRNEP------- 156
WTAEE+DLSK V+ F E NE
Sbjct: 89 WTAEEIDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLVQRFSNEVQIPEARC 148
Query: 157 -YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASS 208
Y F+I + Y + I I+T+PC+KKKADWA+RWI DE S+
Sbjct: 149 FYGFQIMMENIHSETYSLLIDTYIKDSSQRTYLFDAIDTIPCIKKKADWAIRWIEDEQST 208
Query: 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +R++AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 209 FAQRLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 256
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W N+L DE+YFISHVLAFFAASDGIVNENLV+RF+ EVQI EARCFYG
Sbjct: 92 EEIDLSKDLHDWHNRLNDDERYFISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYG 151
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD +R
Sbjct: 152 FQIMMENIHSETYSLLIDTYIKDSSQR 178
>gi|393215957|gb|EJD01448.1| ribonucleotide reductase small subunit [Fomitiporia mediterranea
MF3/22]
Length = 412
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 127/203 (62%), Gaps = 35/203 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK
Sbjct: 81 DQEPLLVESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDQHDWQNKLNDNERHF 140
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 141 ISHVLAFFAASDGIVNENLVERFSNEVQAAEARC-FYGFQIMMENIHSETYSLLIDTYIK 199
Query: 181 GG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ET+PC+K+KADWAL WI+D+ S+FGER++AFA+VEGIFFSG+FASIFW
Sbjct: 200 DPVQREYLFDAVETIPCIKRKADWALHWISDKRSTFGERLVAFAAVEGIFFSGAFASIFW 259
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE +
Sbjct: 260 LKKRGLMPGLTFSNELISRDEGM 282
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D W NKL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 124 KDQHDWQNKLNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMME 183
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD +R
Sbjct: 184 NIHSETYSLLIDTYIKDPVQR 204
>gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
domestica salivary gland hypertrophy virus]
gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
domestica salivary gland hypertrophy virus]
Length = 343
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 126/207 (60%), Gaps = 34/207 (16%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------- 133
++ + EPLL++NPRRFV+FPI+Y+DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 10 IEMDTSNEPLLQENPRRFVLFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWERLSSG 69
Query: 134 -----------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV--- 173
+ N + E + S +R Y F+I + Y V
Sbjct: 70 EQHFIKHVLAFFAASDGIVNENLLERFAQEVQVSEARC-FYGFQIAMENVHSEMYSVLID 128
Query: 174 ----KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ + IET+P VK+KADWA WI ++FGER++AFA VEG+FFSGSFA
Sbjct: 129 TYIRERAERERLFNAIETIPAVKRKADWAFNWITSTTATFGERLLAFAVVEGVFFSGSFA 188
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 189 AIFWLKKRGLMPGLTFSNELISRDEGM 215
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W +L+ E++FI HVLAFFAASDGIVNENL+ERF QEVQ++EARCFYGF
Sbjct: 52 EEVDLSKDMNDWERLSSGEQHFIKHVLAFFAASDGIVNENLLERFAQEVQVSEARCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+++ ER
Sbjct: 112 QIAMENVHSEMYSVLIDTYIRERAER 137
>gi|325559284|gb|ADZ30659.1| ribonucleotide reductase small subunit protein [Cowpox virus]
Length = 333
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 122/204 (59%), Gaps = 35/204 (17%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N+ EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 12 NLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPNEKH 71
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYK 172
+ N + E + + +R Y F++ ++ I Y
Sbjct: 72 FIKHVLAFFAASDGIVNENLAERFCTEVQVTEARC-FYGFQMAIENIHSEMYSLLIDTYV 130
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMPCVKKKADWA +WI D A +GER++AFA+VEGIFFSGSFASIF
Sbjct: 131 KDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLVAFAAVEGIFFSGSFASIF 189
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 190 WLKKRGLMPGLTFSNELISRDEGL 213
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT +EK+FI HVLAFFAASDGIVNENL ERF EVQ+TEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPNEKHFIKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|358054684|dbj|GAA99610.1| hypothetical protein E5Q_06311 [Mixia osmundae IAM 14324]
Length = 474
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 138/239 (57%), Gaps = 57/239 (23%)
Query: 73 KSTLKQVSAPVQENVET---------------------EPLLRDNPRRFVIFPIQYQDIW 111
K TL + S P QE VET EPLL++ RFV+FPI+Y +IW
Sbjct: 107 KITLNEASKP-QEPVETVDEDAMRSRFVGDLTITKDSEEPLLQETANRFVLFPIKYNEIW 165
Query: 112 KMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIRALKT 144
+MYKKAEASFWTAEE+DLSK + + N + +
Sbjct: 166 QMYKKAEASFWTAEEMDLSKDMHDWDNKLNDNERHFVSHVLAFFAASDGIVNENLVERFS 225
Query: 145 GEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADW 197
GE +A+ +R Y F+I + Y + I K I+T+PC+++KA W
Sbjct: 226 GEVQAAEARCF-YGFQIMMENIHSEVYSLLIDTYIREPKERTRLFEAIDTIPCIQRKAQW 284
Query: 198 ALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AL+WI+DE S FGER++AFA+VEGIFFSGSFASIFWLKKRGLMPGL+FSNELISRDE L
Sbjct: 285 ALKWISDEKSCFGERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGL 343
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 71/81 (87%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D+ W NKL +E++F+SHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 185 KDMHDWDNKLNDNERHFVSHVLAFFAASDGIVNENLVERFSGEVQAAEARCFYGFQIMME 244
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE+YSLLIDTYI++ +ER
Sbjct: 245 NIHSEVYSLLIDTYIREPKER 265
>gi|340382685|ref|XP_003389849.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Amphimedon queenslandica]
Length = 389
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 121/200 (60%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL +NPRRFV+FPIQ+ +IW+ YKKA ASFWT EEVDLSK +
Sbjct: 70 EPLLEENPRRFVLFPIQHTEIWQFYKKAVASFWTVEEVDLSKDLQDWEKLKEEERYFIKH 129
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
+ N + + E + + +R Y F+I + Y + I+
Sbjct: 130 VLAFFAASDGIVNENLVERFSSEVQVTEARCF-YGFQIAMENIHSEMYSLLIDTYISDKH 188
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IE MPCVKKKADWA+ WI E SFGERVIAFA+VEGIFFSGSFA+IFWLKK
Sbjct: 189 ESDYLFNAIENMPCVKKKADWAINWIQSEDDSFGERVIAFAAVEGIFFSGSFAAIFWLKK 248
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 249 RGLMPGLTFSNELISRDEGL 268
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 72/85 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W KL +E+YFI HVLAFFAASDGIVNENLVERF+ EVQ+TEARCFYGF
Sbjct: 105 EEVDLSKDLQDWEKLKEEERYFIKHVLAFFAASDGIVNENLVERFSSEVQVTEARCFYGF 164
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEE 332
QIAMEN+HSEMYSLLIDTYI D+ E
Sbjct: 165 QIAMENIHSEMYSLLIDTYISDKHE 189
>gi|266919|sp|P29883.1|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|335710|gb|AAA48294.1| F14 [Vaccinia virus]
Length = 319
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKVTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y FR+ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFRMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNK+T DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKVTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
++A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 RMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|325558213|gb|ADZ29593.1| ribonucleotide reductase small subunit protein [Cowpox virus]
gi|325558859|gb|ADZ30236.1| ribonucleotide reductase small subunit protein [Cowpox virus]
Length = 333
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 116/203 (57%), Gaps = 33/203 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------------- 130
N+ EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S
Sbjct: 12 NLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKY 71
Query: 131 --KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKV 173
K V+ F E A E + + G I Y
Sbjct: 72 FIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVK 131
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFW
Sbjct: 132 DSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFW 190
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGL 213
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 126/201 (62%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFE----- 138
EPLL +N RRFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK + +T+ E
Sbjct: 94 EPLLVENKRRFVLFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWKNRMTDNERFFIS 153
Query: 139 --IRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKT------------ 184
+ + + + E + +++ P C Y + + +T
Sbjct: 154 RVLAFFAASDGIVNENLVENFSAEVQI-PEAKCFYGFQIMMENIHSETYSLLIDSYIKDP 212
Query: 185 ---------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IE +PC+KKKA+WALRWIAD+ + F ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 213 KEADFLFNAIENIPCIKKKAEWALRWIADDEALFAERLVAFAAVEGIFFSGSFASIFWLK 272
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELI RDE L
Sbjct: 273 KRGLMPGLTFSNELICRDEGL 293
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D++ W N++T +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+CFYG
Sbjct: 129 EEIDLSKDINDWKNRMTDNERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYG 188
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLID+YIKD +E
Sbjct: 189 FQIMMENIHSETYSLLIDSYIKDPKE 214
>gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes]
Length = 418
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 125/201 (62%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 92 EPLLLESRRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRLNDSERFFIS 151
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E + + +R Y F+I + Y + I
Sbjct: 152 RVLAFFAASDGIVNENLLERFSNEVQVAEARCF-YGFQIMMENIHSETYSLLIDTYIKDP 210
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IET+PC+K+KA+WALRWI+DE S FGER++AFA+VEGIFFSGSFASIFW+K
Sbjct: 211 VERDFLFDAIETIPCIKRKAEWALRWISDEHSVFGERLVAFAAVEGIFFSGSFASIFWMK 270
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL FSNELISRDE +
Sbjct: 271 KRGLMPGLAFSNELISRDEGM 291
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL WN +L E++FIS VLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYGFQI ME
Sbjct: 133 KDLHDWNNRLNDSERFFISRVLAFFAASDGIVNENLLERFSNEVQVAEARCFYGFQIMME 192
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD ER
Sbjct: 193 NIHSETYSLLIDTYIKDPVER 213
>gi|386783387|pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
gi|386783388|pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 121/199 (60%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWK YK+A+ASFWTAEEVDLSK
Sbjct: 21 EPLLRKSSRRFVIFPIQYPDIWKXYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 80
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 81 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEXYSLLIDTYIRDPKK 140
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IET P VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 141 REFLFNAIETXPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 200
Query: 238 GLMPGLTFSNELISRDEDL 256
GL PGLTFSNELISRDE L
Sbjct: 201 GLXPGLTFSNELISRDEGL 219
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 56 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 115
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSE YSLLIDTYI+D ++R
Sbjct: 116 QILIENVHSEXYSLLIDTYIRDPKKR 141
>gi|383866746|gb|AFH54589.1| ribonucleotide reductase small subunit [Ectromelia virus]
Length = 319
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQVTEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQ+TEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina
98AG31]
Length = 385
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 128/204 (62%), Gaps = 41/204 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL+++ RFV+FPI+Y +IW YK+AEASFWTAEE+DLSK +
Sbjct: 53 EPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWENRLNDDEKHFIK 112
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRI----------KLAPGGICRYK 172
+ N + +GE +A+ +R Y F+I L R
Sbjct: 113 HVLAFFAASDGIVNENLIERFSGEVQAAEARC-FYGFQIMMENIHSEVYSLLIDTYVREP 171
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+++ I+T+PC++KKADWAL+WI+D+ S+FGER+IAFA+VEGIFFSGSFASIF
Sbjct: 172 IERSHLFDA---IDTIPCIRKKADWALKWISDKQSTFGERLIAFAAVEGIFFSGSFASIF 228
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 229 WLKKRGLMPGLTFSNELISRDEGL 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ W N+L DEK+FI HVLAFFAASDGIVNENL+ERF+ EVQ EARCFYG
Sbjct: 88 EEIDLSKDMHDWENRLNDDEKHFIKHVLAFFAASDGIVNENLIERFSGEVQAAEARCFYG 147
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE+YSLLIDTY+++ ER
Sbjct: 148 FQIMMENIHSEVYSLLIDTYVREPIER 174
>gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus]
gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus]
Length = 319
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQVTEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQ+TEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|156545974|ref|XP_001606963.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Nasonia vitripennis]
Length = 388
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 125/202 (61%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLL++NP RFV+FPIQ+ DIW MYKKAEASFWT EEVDLSK +
Sbjct: 65 QLEPLLKENPGRFVLFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADWNRLNDNERHFI 124
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + + +R Y F++ + Y + I+
Sbjct: 125 SHVLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQVAIENIHSEMYSLLIDTYISD 183
Query: 182 G-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
IET+PCV KKA+WAL WI+ ++++F ERVIAFA+VEGIFFSGSFA+IFWL
Sbjct: 184 ASQRQFLFNAIETLPCVAKKANWALNWISHDSATFAERVIAFAAVEGIFFSGSFAAIFWL 243
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 244 KKRGLMPGLTFSNELISRDEGL 265
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WN+L +E++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDMADWNRLNDNERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTYI D +R
Sbjct: 162 QVAIENIHSEMYSLLIDTYISDASQR 187
>gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
CBS 6054]
gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
CBS 6054]
Length = 417
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 122/200 (61%), Gaps = 33/200 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT---------NFEIR 140
EPLL +N RRFV+FPI+Y ++W+MYKKAEASFWTAEE+DLSK + F I
Sbjct: 91 EPLLMENTRRFVLFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWNNRLNDNERFFIS 150
Query: 141 ALKTGEEKASHSRNEP-----------------YLFRIKLAPGGICRYKVKKGGKITGGK 183
+ + NE Y F+I + Y + I K
Sbjct: 151 RILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPK 210
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I+ +PC++KKADWALRWI+D+ + FGER++AFA+VEGIFFSGSFASIFWLKK
Sbjct: 211 EADFLFNAIDNIPCIRKKADWALRWISDDDALFGERLVAFAAVEGIFFSGSFASIFWLKK 270
Query: 237 RGLMPGLTFSNELISRDEDL 256
+GLMPGLTFSNELI RDE L
Sbjct: 271 KGLMPGLTFSNELICRDEGL 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D++ WN +L +E++FIS +LAFFAASDGIVNENLVE F+ EVQI EA+CFYG
Sbjct: 126 EEIDLSKDITDWNNRLNDNERFFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYG 185
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLID+YIKD +E
Sbjct: 186 FQIMMENIHSETYSLLIDSYIKDPKE 211
>gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan]
Length = 319
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|345498175|ref|XP_003428168.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Nasonia vitripennis]
Length = 372
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 125/202 (61%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLL++NP RFV+FPIQ+ DIW MYKKAEASFWT EEVDLSK +
Sbjct: 49 QLEPLLKENPGRFVLFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADWNRLNDNERHFI 108
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E + + +R Y F++ + Y + I+
Sbjct: 109 SHVLAFFAASDGIVNENLVERFSQEVQVTEARCF-YGFQVAIENIHSEMYSLLIDTYISD 167
Query: 182 G-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
IET+PCV KKA+WAL WI+ ++++F ERVIAFA+VEGIFFSGSFA+IFWL
Sbjct: 168 ASQRQFLFNAIETLPCVAKKANWALNWISHDSATFAERVIAFAAVEGIFFSGSFAAIFWL 227
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 228 KKRGLMPGLTFSNELISRDEGL 249
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WN+L +E++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 86 EEVDLSKDMADWNRLNDNERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 145
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTYI D +R
Sbjct: 146 QVAIENIHSEMYSLLIDTYISDASQR 171
>gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus]
Length = 319
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276]
gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii
WM276]
Length = 401
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 149/263 (56%), Gaps = 55/263 (20%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVE-------------- 88
NI+L NT K + SKL + K +++V A +E+VE
Sbjct: 17 NIDL----NTTKKASEPTLLSKLQ-AAAPTKPVIEEVQASAEEDVEEYRKRFVGDLDCEE 71
Query: 89 -TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
EPLL++ RFV+FPI+Y +IW+MYKKA+ASFWTAEE++L+ +
Sbjct: 72 KDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENKLNDNERYF 131
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E +A+ +++ Y F+I + Y + I
Sbjct: 132 IEHVLAFFAASDGIVNENLVERFSAEVQAAEAKS-FYGFQIMMENIHAETYSLLIDTYIK 190
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
++T+PC++KKADWALRWI+D+ S FGER+IAFA+VEGIFFSGSFASIFW
Sbjct: 191 DTARRNFLFDAMDTIPCIRKKADWALRWISDKRSCFGERLIAFAAVEGIFFSGSFASIFW 250
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGL 273
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I+ DL W NKL +E+YFI HVLAFFAASDGIVNENLVERF+ EVQ EA+ FYG
Sbjct: 109 EEINLAPDLHDWENKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+H+E YSLLIDTYIKD R
Sbjct: 169 FQIMMENIHAETYSLLIDTYIKDTARR 195
>gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus]
gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus]
Length = 319
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus]
gi|325558644|gb|ADZ30022.1| ribonucleotide reductase small subunit protein [Cowpox virus]
Length = 333
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 115/203 (56%), Gaps = 33/203 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------------- 130
N+ EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S
Sbjct: 12 NLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKY 71
Query: 131 --KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKV 173
K V+ F E A E + + G I Y
Sbjct: 72 FIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVK 131
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWA +WI D A +GER+IAF +VEGIFFSGSFASIFW
Sbjct: 132 DSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFTAVEGIFFSGSFASIFW 190
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGL 213
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|325557997|gb|ADZ29378.1| ribonucleotide reductase small subunit protein [Cowpox virus]
Length = 319
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 121/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D ++ +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHD-STGYGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Meleagris gallopavo]
Length = 339
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/199 (51%), Positives = 123/199 (61%), Gaps = 35/199 (17%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------------- 133
PLLR+NP FPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 22 PLLRENPGG-SSFPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWESLKPEEKYFISHV 80
Query: 134 ---------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK- 183
+ N + + E + + +R Y F+I + Y + I K
Sbjct: 81 LAFFAASDGIVNENLVERFSQEVQITEARC-FYGFQIAMENIHSEMYSLLIDTYIKDSKE 139
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IET+PCVKKKADWA+RWI D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKR
Sbjct: 140 REFLFNAIETLPCVKKKADWAIRWIGDKKATYGERVVAFAAVEGIFFSGSFASIFWLKKR 199
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 200 GLMPGLTFSNELISRDEGL 218
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW L +EKYFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 53 TAEEVDLSKDLQHWESLKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 112
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 113 GFQIAMENIHSEMYSLLIDTYIKDSKER 140
>gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16]
gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16]
gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus]
gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus]
gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus]
gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|451327718|gb|AGF36590.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|451327926|gb|AGF36797.1| ribonucleotide reductase small subunit [Monkeypox virus]
Length = 319
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|56404698|sp|O57175.1|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus]
gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara]
gi|325514058|gb|ADZ24052.1| ribonucleotide reductase small subunit protein [Cowpox virus]
gi|325557783|gb|ADZ29165.1| ribonucleotide reductase small subunit protein [Cowpox virus]
Length = 319
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
Length = 397
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 127/203 (62%), Gaps = 35/203 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EP+L++N RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 69 EEEPILKENKGRFVLFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDWDNRMTDPERHF 128
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 129 VSHVLAFFAASDGIVNENLVERFSAEVQATEARC-FYGFQIMMENIHSETYSLLIDTYIR 187
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ IET+P VK+KADWALRWI+D +SF ER++AFA+VEGIFFSGSFASIFW
Sbjct: 188 EPERRDFLFNAIETVPVVKQKADWALRWISDHRASFSERLVAFAAVEGIFFSGSFASIFW 247
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGL+FSNELISRDE L
Sbjct: 248 LKKRGLMPGLSFSNELISRDEGL 270
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W N++T E++F+SHVLAFFAASDGIVNENLVERF+ EVQ TEARCFYG
Sbjct: 106 EEIDLSKDLYDWDNRMTDPERHFVSHVLAFFAASDGIVNENLVERFSAEVQATEARCFYG 165
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI++ E R
Sbjct: 166 FQIMMENIHSETYSLLIDTYIREPERR 192
>gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
Length = 331
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 124/201 (61%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA 149
EPLL+++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK + +++ R
Sbjct: 7 EPLLKESIRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDL-HDWQNRMNDNERHFI 65
Query: 150 SHSR----------NEPYLFRIK---LAPGGICRYKVKKGGKITGGKT------------ 184
SH NE L R P C Y + + +T
Sbjct: 66 SHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIREA 125
Query: 185 ---------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ET+PCV +KA WALRWI D+ SSFG R++AFA+VEGIFFSGSFASIFWLK
Sbjct: 126 AEREHLFNAVETIPCVARKAQWALRWINDDRSSFGIRLVAFAAVEGIFFSGSFASIFWLK 185
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELI+RDE +
Sbjct: 186 KRGLMPGLTFSNELITRDEGM 206
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL W N++ +E++FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYGFQI ME
Sbjct: 48 KDLHDWQNRMNDNERHFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMME 107
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYI++ ER
Sbjct: 108 NIHSETYSLLIDTYIREAAER 128
>gi|325559071|gb|ADZ30447.1| ribonucleotide reductase small subunit protein [Cowpox virus]
Length = 319
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPNEKHFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT +EK+FI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPNEKHFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus]
gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68]
Length = 319
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
Length = 405
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 139/231 (60%), Gaps = 45/231 (19%)
Query: 60 LQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEA 119
++ +K +++P+ T K++ A EPLL++NP+RFV+FPI+Y + MYKKAEA
Sbjct: 54 IETTKPTEAPVVKAKTPKELEA-------EEPLLQENPQRFVLFPIKYHE---MYKKAEA 103
Query: 120 SFWTAEEVDLSKVV---------------------------VTNFEIRALKTGEEKASHS 152
SFWTAEE+DLSK + + N + +GE + +
Sbjct: 104 SFWTAEEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSGEVQVPEA 163
Query: 153 RNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADE 205
R Y F+I + Y + I K I+T+PC++KKADWA+RWI D+
Sbjct: 164 RCF-YGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDK 222
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
S+F +R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 DSTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 273
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L DE++FISHVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 109 EEIDLSKDIHDWNNRLNDDERFFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+Q++R
Sbjct: 169 FQIMMENIHSETYSLLIDTYIKEQKQR 195
>gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767]
gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii CBS767]
Length = 426
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 119/211 (56%), Gaps = 55/211 (26%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA 149
EPLL +N RRFV+FPI+Y +IW+MYKKAEASFWTAEE+DL K T +
Sbjct: 102 EPLLIENTRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLGK-----------DTHDWNE 150
Query: 150 SHSRNEPYLFRIKLA-----------------------PGGICRYKVKKGGKITGGKT-- 184
+ NE Y LA P C Y + + +T
Sbjct: 151 KLNNNERYFISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYS 210
Query: 185 -------------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
I+ +PC+KKKADWALRWI D+ + FGER++AFA+VEGIFFS
Sbjct: 211 LLIDTYIKDPKEADFLFNAIDNIPCIKKKADWALRWINDDDALFGERLVAFAAVEGIFFS 270
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 271 GSFASIFWLKKRGLMPGLTFSNELICRDEGL 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D WN KL +E+YFIS +LAFFAASDGIVNENLVE F+ EVQ+ EA+CFYG
Sbjct: 137 EEIDLGKDTHDWNEKLNNNERYFISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYG 196
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 197 FQIMMENIHSETYSLLIDTYIKDPKE 222
>gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus]
Length = 319
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFF ASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus]
gi|373447703|gb|AEY73087.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|373447945|gb|AEY73328.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|439965889|gb|AGB75763.1| ribonucleotide reductase small subunit [Vaccinia virus]
Length = 319
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|132629|sp|P11158.1|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus]
gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia
virus]
gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR]
Length = 319
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|221120499|ref|XP_002159812.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Hydra magnipapillata]
Length = 387
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 125/204 (61%), Gaps = 41/204 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD-------------------LS 130
EPLLR+NPRRFV+FPIQY+DIWKMYK+AEASFWT EEVD +S
Sbjct: 60 EPLLRENPRRFVLFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEEKLKPQEKYFIS 119
Query: 131 KVV--------VTNFEIRALKTGEEKASHSRNEPYLFRI----------KLAPGGICRYK 172
V+ + N + + E + +R Y F+I L + +
Sbjct: 120 HVLAFFAASDGIVNENLVECFSQEVQLPEAR-AFYGFQIAIENIHSEMYSLLIDTLIKDP 178
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
++K IETMPCV+KKA WAL+WI + +SF ERV+AFA+VEGIFFSGSFA+IF
Sbjct: 179 IEKSNLFNA---IETMPCVQKKAVWALKWINKDCASFSERVVAFAAVEGIFFSGSFAAIF 235
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKR L+PG+TFSNELISRDE L
Sbjct: 236 WLKKRNLLPGVTFSNELISRDEGL 259
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Query: 255 DLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
D HW KL EKYFISHVLAFFAASDGIVNENLVE F+QEVQ+ EAR FYGFQIA+EN
Sbjct: 102 DAVHWEEKLKPQEKYFISHVLAFFAASDGIVNENLVECFSQEVQLPEARAFYGFQIAIEN 161
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSEMYSLLIDT IKD E+
Sbjct: 162 IHSEMYSLLIDTLIKDPIEK 181
>gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus]
Length = 319
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 119/200 (59%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFXASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAGX-GERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFF ASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera
kw1407]
Length = 378
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 137/227 (60%), Gaps = 39/227 (17%)
Query: 64 KLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWT 123
K D+ ++ + + + A E EPLL++N +RFV+FPI+Y +IW+MYKK EASFWT
Sbjct: 39 KFVDAKEENNTAVSAIKAAEAE----EPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWT 94
Query: 124 AEEVDLSKVV---------------------------VTNFEIRALKTGEEKASHSRNEP 156
AEE+DLSK + + N + + E + +R
Sbjct: 95 AEEIDLSKDLHDWNNRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARC-F 153
Query: 157 YLFRIKLAPGGICRYK--VKKGGKITGGKT-----IETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + K T +T I+T+PC++KKADWAL+WI+D S+F
Sbjct: 154 YGFQIMMENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWISDRESTF 213
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+R++AFA+VEGIFFSG+F+SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 214 AQRLVAFAAVEGIFFSGAFSSIFWLKKRGLMPGLTFSNELISRDEGL 260
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE++F+SH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 96 EEIDLSKDLHDWNNRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYG 155
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYIKD +R
Sbjct: 156 FQIMMENVHSETYSLLIDTYIKDTAQR 182
>gi|132628|sp|P20493.1|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen]
Length = 319
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|395328928|gb|EJF61318.1| beta subunit of ribonucleotide reductase [Dichomitus squalens
LYAD-421 SS1]
Length = 405
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 123/201 (61%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL + RRFV+FPIQY +IW+MYK+A+ASFW+ EE++LS +
Sbjct: 73 EPLLTETTRRFVLFPIQYNEIWQMYKQAQASFWSVEEINLSHDLWDWNYKLTDNERHFLS 132
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +R Y F+I + Y + I
Sbjct: 133 YVLAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMIENVHSETYSLLIDTYIKDP 191
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IET+PC+KKKADWALRWIADE S F ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 192 AERKFLFDAIETVPCIKKKADWALRWIADERSVFAERLVAFAAVEGIFFSGSFASIFWLK 251
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 252 KRGLMPGLTFSNELISRDEGM 272
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
S E I+ DL WN KLT +E++F+S+VLAFFAASDGIVNENLVERF+ EVQ EARCF
Sbjct: 106 SVEEINLSHDLWDWNYKLTDNERHFLSYVLAFFAASDGIVNENLVERFSNEVQAAEARCF 165
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQI +ENVHSE YSLLIDTYIKD ER
Sbjct: 166 YGFQIMIENVHSETYSLLIDTYIKDPAER 194
>gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus]
gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus]
gi|373447227|gb|AEY72613.1| ribonucleotide reductase small subunit [Vaccinia virus]
Length = 319
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|448118274|ref|XP_004203456.1| Piso0_001065 [Millerozyma farinosa CBS 7064]
gi|448120689|ref|XP_004204039.1| Piso0_001065 [Millerozyma farinosa CBS 7064]
gi|359384324|emb|CCE79028.1| Piso0_001065 [Millerozyma farinosa CBS 7064]
gi|359384907|emb|CCE78442.1| Piso0_001065 [Millerozyma farinosa CBS 7064]
Length = 425
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 141/246 (57%), Gaps = 38/246 (15%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSA---PVQENVETEPLLRDNPRRFVIFP 104
L K + + L ++ + K+ L Q A ++E + EPLL +N RRFV+FP
Sbjct: 56 LEAQAAKGVNDGKTSDDLEEARMHHKNFLSQHKAHRHQLKEMEKNEPLLVENKRRFVLFP 115
Query: 105 IQYQDIWKMYKKAEASFWTAEEVD-------------------LSKVV--------VTNF 137
I+Y +IW+MYKKAEASFWTAEE+D +S+++ + N
Sbjct: 116 IRYHEIWQMYKKAEASFWTAEEIDLGKDTHDWQNKMNENERFFISRILAFFAASDGIVNE 175
Query: 138 EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPC 190
+ + E + ++ Y F+I + Y + I K IE +PC
Sbjct: 176 NLVENFSAEVQVPEAKC-FYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAIENIPC 234
Query: 191 VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 250
++KKADWALRWI D+ + FGER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELI
Sbjct: 235 IQKKADWALRWINDDDALFGERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 294
Query: 251 SRDEDL 256
RDE L
Sbjct: 295 CRDEGL 300
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D W NK+ +E++FIS +LAFFAASDGIVNENLVE F+ EVQ+ EA+CFYG
Sbjct: 136 EEIDLGKDTHDWQNKMNENERFFISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYG 195
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 196 FQIMMENIHSETYSLLIDTYIKDPKE 221
>gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV]
gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura
NPV]
Length = 333
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 131/223 (58%), Gaps = 44/223 (19%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N+ EPLL++NPRRFV+FPI+Y DIW MYKKAEASFWT EEVDLSK +
Sbjct: 8 NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDWDSLKESERN 67
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYK 172
+ N + + E + + +R Y F++ ++ I Y
Sbjct: 68 FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARC-FYGFQVAIENVHSEMYSLLIDTYV 126
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IETMP + KKA+W+++WI ++F ER+IAFA+VEGIFFSGSFA+IF
Sbjct: 127 KDNDEKRRLFNAIETMPAIAKKAEWSIKWIKSATATFAERLIAFAAVEGIFFSGSFAAIF 186
Query: 233 WLKKRGLMPGLTFSNELISRDEDL---------SHW-NKLTRD 265
W+KKRGLMPGLTFSNELISRDE L SH NK TRD
Sbjct: 187 WMKKRGLMPGLTFSNELISRDEGLHTDFACLMYSHIVNKPTRD 229
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DLS W+ L E+ FI HVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 47 EEVDLSKDLSDWDSLKESERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 106
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+ENVHSEMYSLLIDTY+KD +E+
Sbjct: 107 QVAIENVHSEMYSLLIDTYVKDNDEK 132
>gi|373447466|gb|AEY72851.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|373448186|gb|AEY73568.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|373448417|gb|AEY73798.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|373448658|gb|AEY74038.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|373448899|gb|AEY74278.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|373449129|gb|AEY74507.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|373449370|gb|AEY74747.1| ribonucleotide reductase small subunit [Vaccinia virus]
Length = 319
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase small chain [Puccinia graminis
f. sp. tritici CRL 75-36-700-3]
gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase small chain [Puccinia graminis
f. sp. tritici CRL 75-36-700-3]
Length = 380
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 127/203 (62%), Gaps = 35/203 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLL+++ RFV+FPI+Y +IW YK+AEASFWTAEE+DLSK +
Sbjct: 46 DQEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWDNKLNADEKHF 105
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKV 173
+ N + +GE + + +R Y F+I + I Y
Sbjct: 106 IKHVLAFFAASDGIVNENLIERFSGEVQVAEARC-FYGFQIMMENIHSEVYSLLIDTYVR 164
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ + I+T+PC++KKADWAL WI+D+ S+FGER+IAFA+VEGIFFSGSFASIFW
Sbjct: 165 EPTERAHLFDAIDTIPCIRKKADWALTWISDKKSTFGERLIAFAAVEGIFFSGSFASIFW 224
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 225 LKKRGLMPGLTFSNELISRDEGL 247
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ W NKL DEK+FI HVLAFFAASDGIVNENL+ERF+ EVQ+ EARCFYG
Sbjct: 83 EEIDLSKDMHDWDNKLNADEKHFIKHVLAFFAASDGIVNENLIERFSGEVQVAEARCFYG 142
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE+YSLLIDTY+++ ER
Sbjct: 143 FQIMMENIHSEVYSLLIDTYVREPTER 169
>gi|373449611|gb|AEY74987.1| ribonucleotide reductase small subunit [Vaccinia virus]
Length = 319
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNR 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD +
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNRK 122
>gi|325558427|gb|ADZ29806.1| ribonucleotide reductase small subunit protein [Cowpox virus]
Length = 333
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 115/203 (56%), Gaps = 33/203 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------------- 130
N+ E +L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S
Sbjct: 12 NLVMEQILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKY 71
Query: 131 --KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKV 173
K V+ F E A E + + G I Y
Sbjct: 72 FIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVK 131
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFW
Sbjct: 132 DSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFW 190
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGL 213
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
Length = 362
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 128/213 (60%), Gaps = 41/213 (19%)
Query: 79 VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFE 138
V P E EPLL+D+ RFV+FPIQY +IW MYKK EASFWTAEE+DLSK + ++E
Sbjct: 36 VDCPEHE----EPLLKDSISRFVLFPIQYHEIWAMYKKEEASFWTAEEMDLSKDL-HDWE 90
Query: 139 IRALKTGEEKASHSR----------NEPYLFR----IKLAPGGICRYKVKKGGKITGGKT 184
R SH NE L R +K+ P C Y + + +T
Sbjct: 91 ERMNDNERHFISHVLAFFAASDGIVNENLLTRFCGEVKV-PEARCFYGFQIMMENVHSET 149
Query: 185 ---------------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
+ET+PCV+KKA+WALRWIAD SSF R++AF++VEGIF
Sbjct: 150 YSLLIDTYIRDPAQRTFLLNAVETIPCVRKKAEWALRWIADRRSSFAIRLVAFSAVEGIF 209
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFASIFWLKKRGLMPGLTFSNELI+RDE +
Sbjct: 210 FSGSFASIFWLKKRGLMPGLTFSNELITRDEGM 242
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 98/173 (56%), Gaps = 11/173 (6%)
Query: 163 LAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIAD-EASSFGERVIAFASVEG 221
+AP K K+ G T E W R++ D + E ++ +
Sbjct: 1 MAPASFAPKATKLVDKVAQGLTDEN-------DGWRFRYVGDVDCPEHEEPLLKDSISRF 53
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAAS 280
+ F + I+ + K+ ++ E + +DL W ++ +E++FISHVLAFFAAS
Sbjct: 54 VLFPIQYHEIWAMYKKE--EASFWTAEEMDLSKDLHDWEERMNDNERHFISHVLAFFAAS 111
Query: 281 DGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
DGIVNENL+ RF EV++ EARCFYGFQI MENVHSE YSLLIDTYI+D +R
Sbjct: 112 DGIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSETYSLLIDTYIRDPAQR 164
>gi|405123346|gb|AFR98111.1| ribonucleotide reductase subunit [Cryptococcus neoformans var.
grubii H99]
Length = 389
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 145/250 (58%), Gaps = 41/250 (16%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPIKD--KSTLKQVSAPVQENVETEPLLRDNPRRF 100
NI+L NT K + SKL + +D + K+ + + EPLL++ RF
Sbjct: 17 NIDL----NTTKKASEATLLSKLQAAAPEDDVEEYRKRFVGDLDCEEKDEPLLKETNARF 72
Query: 101 VIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------- 133
V+FPI+Y +IW+MYKKA+ASFWTAEE++L+ +
Sbjct: 73 VLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENKLNDNERYFIEHVLAFFAASDG 132
Query: 134 VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIE 186
+ N + +GE + + +++ Y F+I + Y + I ++
Sbjct: 133 IVNENLVERFSGEVQIAEAKS-FYGFQIMMENIHAETYSLLIDTYIKDTARRNFLFDAMD 191
Query: 187 TMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFS 246
T+PC++KKADWALRWI+D+ S FGER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGLTFS
Sbjct: 192 TIPCIRKKADWALRWISDQKSCFGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFS 251
Query: 247 NELISRDEDL 256
NELISRDE L
Sbjct: 252 NELISRDEGL 261
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I+ DL W NKL +E+YFI HVLAFFAASDGIVNENLVERF+ EVQI EA+ FYG
Sbjct: 97 EEINLAPDLHDWENKLNDNERYFIEHVLAFFAASDGIVNENLVERFSGEVQIAEAKSFYG 156
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+H+E YSLLIDTYIKD R
Sbjct: 157 FQIMMENIHAETYSLLIDTYIKDTARR 183
>gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum]
Length = 397
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 125/212 (58%), Gaps = 37/212 (17%)
Query: 82 PVQENVETE----PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------ 131
P +E+ ++E P+L +N RFV+FPI+Y +IW+MYKKAEASFW AEE+DLSK
Sbjct: 55 PSEEDTKSEEMDEPILTENKHRFVLFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDWS 114
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRY 171
V+ F E NE Y F+I + Y
Sbjct: 115 DRLNDDERYFISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETY 174
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K I+T+PC+KKKADWA+RWI D S+F +R++AFA+VEGIFF
Sbjct: 175 SLLIDTYIKDPKQRTYLFDAIDTIPCIKKKADWAIRWIEDRNSTFAQRLVAFAAVEGIFF 234
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGL+FSNELISRDE L
Sbjct: 235 SGSFASIFWLKKRGLMPGLSFSNELISRDEGL 266
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ W ++L DE+YFISHVLAFFAASDGIVNENLV+RF+ EVQI EARCFYG
Sbjct: 102 EEIDLSKDMHDWSDRLNDDERYFISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYG 161
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYIKD ++R
Sbjct: 162 FQIMMENVHSETYSLLIDTYIKDPKQR 188
>gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus]
Length = 319
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 119/200 (59%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
R LMPGLTFSNELISRDE L
Sbjct: 180 RDLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 401
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 126/201 (62%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++ RFV+FPI+Y +IW+MYKKA+ASFWTAEE++L+ +
Sbjct: 74 EPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENKLNDNERYFIE 133
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A+ +++ Y F+I + Y + I
Sbjct: 134 HVLAFFAASDGIVNENLVERFSAEVQAAEAKS-FYGFQIMMENIHAETYSLLIDTYIKDT 192
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
I+T+PC++KKADWALRWI+D+ S FGER+IAFA+VEGIFFSGSFASIFWLK
Sbjct: 193 ARRNFLFDAIDTIPCIRKKADWALRWISDKRSCFGERLIAFAAVEGIFFSGSFASIFWLK 252
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 253 KRGLMPGLTFSNELISRDEGL 273
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I+ DL W NKL +E+YFI HVLAFFAASDGIVNENLVERF+ EVQ EA+ FYG
Sbjct: 109 EEINLAPDLHDWENKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+H+E YSLLIDTYIKD R
Sbjct: 169 FQIMMENIHAETYSLLIDTYIKDTARR 195
>gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
Length = 325
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 127/224 (56%), Gaps = 40/224 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-------------KVVV 134
+ EPLL N R+V+FPI+Y DIW+MYKKAE+SFWT EEVDL+ + +
Sbjct: 6 QIEPLLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDWLSLNDKERYFI 65
Query: 135 TNFEIRALKTGEEKASHSR------NEPYLFRIKLAPGG---------------ICRYKV 173
+N I A + ++ NE + K G I Y
Sbjct: 66 SN--ILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYIT 123
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ K I T+PC+KKKADWAL+WI DE SSF RVIAFA VEGIFFSG+FASIFW
Sbjct: 124 DQDEKTHLFNAISTIPCIKKKADWALKWIKDEKSSFATRVIAFACVEGIFFSGAFASIFW 183
Query: 234 LKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFIS---HVL 274
LK RGLMPGLTFSNELISRDE L H + +Y I+ H+L
Sbjct: 184 LKNRGLMPGLTFSNELISRDEGL-HCDFACLLNQYLINKSPHIL 226
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 65/79 (82%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D + W L E+YFIS++LAFFAASDGIVN NLVERF EV I EA+CFYGFQ+A+EN+
Sbjct: 50 DRNDWLSLNDKERYFISNILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENI 109
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLLID YI DQ+E+
Sbjct: 110 HSEMYSLLIDAYITDQDEK 128
>gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus]
gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96]
gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS]
Length = 319
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 119/200 (59%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L N RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAKNQNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPNEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT +EKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPNEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|392568086|gb|EIW61260.1| hypothetical protein TRAVEDRAFT_63110 [Trametes versicolor
FP-101664 SS1]
Length = 428
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 123/201 (61%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL + RRFV+FPIQY +IW+MYK A+ASFWT EE++LS +
Sbjct: 95 EPLLTETTRRFVLFPIQYDEIWQMYKTAQASFWTVEEINLSYDLMDWSDKLNDNERHFIS 154
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
+ N + + E +A+ +R Y F+I + I Y
Sbjct: 155 YVLAFFAASDGIVNENLVERFSNEVQAAEARCF-YGFQIMMENVHSETYSLLIDTYIRDP 213
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ I+T+PC+KKKADWALRWIADE S+F ER++AFA+VEGIFFSGSFA+IFWLK
Sbjct: 214 AARAFLFDAIDTIPCIKKKADWALRWIADERSAFTERLVAFAAVEGIFFSGSFAAIFWLK 273
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 274 KRGLMPGLTFSNELISRDEGM 294
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I+ DL W +KL +E++FIS+VLAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 130 EEINLSYDLMDWSDKLNDNERHFISYVLAFFAASDGIVNENLVERFSNEVQAAEARCFYG 189
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MENVHSE YSLLIDTYI+D R
Sbjct: 190 FQIMMENVHSETYSLLIDTYIRDPAAR 216
>gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum]
Length = 335
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 120/200 (60%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EPLL++N RFV+FPI+Y DIW MYKKAEASFWTAEE+DL+ K
Sbjct: 7 EPLLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWENKLNDNERHFIK 66
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
V+ F E A+ +E Y F+I + I Y
Sbjct: 67 NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKNPD 126
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IET+PCVKKKADWALRWI + + SF ER++AFA+VEGIFFSGSF SIFWLKK
Sbjct: 127 EKKVLFNAIETIPCVKKKADWALRWITN-SKSFAERLVAFAAVEGIFFSGSFCSIFWLKK 185
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 186 RGLMPGLTFSNELISRDEGL 205
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I D++ W NKL +E++FI +VLAFFAASDGIVNENL +F EVQI EARCFYG
Sbjct: 42 EEIDLASDVNEWENKLNDNERHFIKNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSE YSLLIDTYIK+ +E+
Sbjct: 102 FQIAIENIHSETYSLLIDTYIKNPDEK 128
>gi|452846268|gb|EME48201.1| hypothetical protein DOTSEDRAFT_69973 [Dothistroma septosporum
NZE10]
Length = 417
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 130/212 (61%), Gaps = 35/212 (16%)
Query: 79 VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----- 133
V+ ++E EP+L++NP RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 68 VAEGIKEEEAVEPILQENPGRFVLFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNK 127
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + +R Y F+I + Y
Sbjct: 128 RLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCF-YGFQIMMENIHSETY 186
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I+ K I+ +PC+++KADWALRWI+D+ S+F R+IAFA+VEGIFF
Sbjct: 187 SLLIDTYISEPKQRTYLFNAIDNIPCIRRKADWALRWISDKNSTFALRLIAFAAVEGIFF 246
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFA+IFWLKKRGLM GLTFSNELISRDE +
Sbjct: 247 SGSFAAIFWLKKRGLMAGLTFSNELISRDEGM 278
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WNK L DE++FISHVLAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 114 EEIDLSKDLHDWNKRLNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYG 173
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI + ++R
Sbjct: 174 FQIMMENIHSETYSLLIDTYISEPKQR 200
>gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
complex [Ogataea parapolymorpha DL-1]
Length = 408
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 124/201 (61%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------------S 130
EPLL +N RRFV+FPI+Y +IW+MYKKAEASFWTAEE+DL S
Sbjct: 82 EPLLVENKRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDNERYFVS 141
Query: 131 KVV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+V+ + N + + E + ++ Y F+I + Y + +
Sbjct: 142 RVLAFFAASDGIVNENLVENFSAEVQVPEAKC-FYGFQIMMENIHSETYSLLIDTYVKDP 200
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+PC+K+KA+WA+RWI DE + F ER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 201 KEAEFLFNAIETIPCIKEKAEWAMRWINDEEALFAERLVAFAAVEGIFFSGSFASIFWLK 260
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELI RDE L
Sbjct: 261 KRGLMPGLTFSNELICRDEGL 281
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L +E+YF+S VLAFFAASDGIVNENLVE F+ EVQ+ EA+CFYG
Sbjct: 117 EEIDLSKDLHDWNNRLNDNERYFVSRVLAFFAASDGIVNENLVENFSAEVQVPEAKCFYG 176
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTY+KD +E
Sbjct: 177 FQIMMENIHSETYSLLIDTYVKDPKE 202
>gi|449492913|ref|XP_004159139.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase small chain-like [Cucumis sativus]
Length = 329
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 121/206 (58%), Gaps = 39/206 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
++ EPLL NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 3 SIPDEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDTRHWDSLTSDEKH 62
Query: 132 --------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R +K E + + R Y F+I + Y +
Sbjct: 63 FITHVLAFFAASDGIVLENLAGRFMK--EXQVAEVR-AFYGFQIAIENIHSEMYSLLLET 119
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I I+T+PCVKKKADWAL+WI D SF ER++AFA VEGIFFSGSF S
Sbjct: 120 YIKDSNEKNRLFHAIDTVPCVKKKADWALKWI-DSTESFAERILAFACVEGIFFSGSFCS 178
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 179 IFWLKKRGLMPGLTFSNELISRDEGL 204
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D HW+ LT DEK+FI+HVLAFFAASDGIV ENL RF +E Q+ E R FYGF
Sbjct: 42 EEVDLSQDTRHWDSLTSDEKHFITHVLAFFAASDGIVLENLAGRFMKEXQVAEVRAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++TYIKD E+
Sbjct: 102 QIAIENIHSEMYSLLLETYIKDSNEK 127
>gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta]
Length = 426
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 132/231 (57%), Gaps = 37/231 (16%)
Query: 61 QQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
Q L +K K+ +++V N E EPLL++ P RFVIFPIQY DIW+MYKKA AS
Sbjct: 72 QDHGLKSGVVKTKA-VRKVQLKDDFNPELEPLLQEGPNRFVIFPIQYPDIWEMYKKAVAS 130
Query: 121 FWTAEEVDLSKV----------------------------VVTNFEIRALKTGEEKASHS 152
FWT EEV L K+ + N + + E K + +
Sbjct: 131 FWTIEEVPLHKLDKKDWDEKLNSDEKYFISHVLAFFAASDGIVNENLIERFSQEVKIAEA 190
Query: 153 RNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADE 205
R Y F+I + Y + I+ K IET+PCV KKA WAL WI E
Sbjct: 191 RC-FYGFQIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPCVGKKAKWALNWINHE 249
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+++F ERVIAFA+VEGIFFSGSFA+IFWLKKRG+MPGLTFSNELISRDE L
Sbjct: 250 SATFPERVIAFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGL 300
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 71/80 (88%), Gaps = 1/80 (1%)
Query: 255 DLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
D W+ KL DEKYFISHVLAFFAASDGIVNENL+ERF+QEV+I EARCFYGFQIA+EN
Sbjct: 143 DKKDWDEKLNSDEKYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGFQIAIEN 202
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSEMYSLLI+TYI D +E+
Sbjct: 203 IHSEMYSLLIETYISDPKEK 222
>gi|449455910|ref|XP_004145693.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
[Cucumis sativus]
Length = 329
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 121/206 (58%), Gaps = 39/206 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
++ EPLL NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 3 SIPDEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDTRHWDSLTSDEKH 62
Query: 132 --------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R +K E + + R Y F+I + Y +
Sbjct: 63 FITHVLAFFAASDGIVLENLAGRFMK--EVQVAEVR-AFYGFQIAIENIHSEMYSLLLET 119
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I I+T+PCVKKKADWAL+WI D SF ER++AFA VEGIFFSGSF S
Sbjct: 120 YIKDSNEKNRLFHAIDTVPCVKKKADWALKWI-DSTESFAERILAFACVEGIFFSGSFCS 178
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 179 IFWLKKRGLMPGLTFSNELISRDEGL 204
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D HW+ LT DEK+FI+HVLAFFAASDGIV ENL RF +EVQ+ E R FYGF
Sbjct: 42 EEVDLSQDTRHWDSLTSDEKHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEVRAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++TYIKD E+
Sbjct: 102 QIAIENIHSEMYSLLLETYIKDSNEK 127
>gi|397502371|ref|XP_003821834.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase subunit M2 B [Pan paniscus]
Length = 515
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 135/242 (55%), Gaps = 39/242 (16%)
Query: 54 KDLTNNLQQSKLS-DSPIKDKSTLKQVSAPVQENVETE------PLLRDNPRRFVIFPIQ 106
K+LT L+ ++ S P KD + Q + E+E PLLR + RRFVIFPIQ
Sbjct: 153 KELTLGLRPARCSAPGPAKDDAWRPQAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQ 212
Query: 107 YQDIWKMYKKAEASFWT-----------------AEEVDLSKVVVTNFEIRALKTGE--- 146
Y DIWKMYK+A+ASFWT A+E ++ F E
Sbjct: 213 YPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLV 272
Query: 147 EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKK 194
E+ S P Y F+I + Y + I K IETMP VKKK
Sbjct: 273 ERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKK 332
Query: 195 ADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
DWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE
Sbjct: 333 XDWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDE 392
Query: 255 DL 256
L
Sbjct: 393 GL 394
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 229 TAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 288
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 289 GFQILIENVHSEMYSLLIDTYIRDPKKR 316
>gi|390442956|ref|ZP_10230755.1| ribonucleotide reductase [Nitritalea halalkaliphila LW7]
gi|389667264|gb|EIM78687.1| ribonucleotide reductase [Nitritalea halalkaliphila LW7]
Length = 326
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 120/199 (60%), Gaps = 34/199 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EP+L+DN RFV+FPIQ+ DIW+ YKKAEASFWTAEE+DLS+
Sbjct: 5 EPILQDNGNRFVLFPIQHNDIWQFYKKAEASFWTAEEIDLSQDLNDWKNLTDGERHFISH 64
Query: 133 VVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E A H +E Y F+I + Y + I +
Sbjct: 65 ILAFFAASDGIVNENLAEHFVSEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKNAQE 124
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IET+PCV+KKADWALRWI + SF ER+IAFA+VEGIFFSGSF S+FWLKKR
Sbjct: 125 RDYLLNAIETIPCVQKKADWALRWI--DNGSFQERLIAFAAVEGIFFSGSFCSLFWLKKR 182
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 183 GLMPGLTFSNELISRDEGL 201
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL+ W LT E++FISH+LAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 40 EEIDLSQDLNDWKNLTDGERHFISHILAFFAASDGIVNENLAEHFVSEVQYTEAKFFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIK+ +ER
Sbjct: 100 QIAMENIHSETYSLLIDTYIKNAQER 125
>gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818]
Length = 408
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 132/230 (57%), Gaps = 42/230 (18%)
Query: 65 LSDSPIKDKSTLK--QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
L++ I+ K L+ + E + EPLLR+NP RFVI PIQ++ +W MYKKA ASFW
Sbjct: 59 LAELKIRAKEALQNDECVELTDEEIAAEPLLRENPSRFVILPIQHRQVWSMYKKAVASFW 118
Query: 123 TAEEVDLSKVVVTNFEIRALKTGEEK---------------ASHSRNEPYLFRIKLAPGG 167
TAEEVDLS+ + R LK E+ + + E ++ ++L P
Sbjct: 119 TAEEVDLSRDLD---HWRGLKDTEQHFIKHVLAFFAASDGIVNENLVERFMCEVQL-PEA 174
Query: 168 ICRYKVK---------------------KGGKITGGKTIETMPCVKKKADWALRWIADEA 206
C Y + K +ET+P VK+KA+WA+RWI +
Sbjct: 175 RCFYGFQIMIENIHSEMYSLLIDTYINDPQEKHMLFNAVETLPAVKRKAEWAMRWIDHKR 234
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+SF ERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGLT SNELISRDE L
Sbjct: 235 ASFAERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTQSNELISRDEGL 284
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 69/88 (78%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + DL HW L E++FI HVLAFFAASDGIVNENLVERF EVQ+ EARCFY
Sbjct: 119 TAEEVDLSRDLDHWRGLKDTEQHFIKHVLAFFAASDGIVNENLVERFMCEVQLPEARCFY 178
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +EN+HSEMYSLLIDTYI D +E+
Sbjct: 179 GFQIMIENIHSEMYSLLIDTYINDPQEK 206
>gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 331
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 122/204 (59%), Gaps = 39/204 (19%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
+ EP+L +NP RF +FPI+Y +W+MYKKAEASFWTAEEVDLS
Sbjct: 6 QKEPILVENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWETLTDDERHFI 65
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV------ 173
+V+ N +R +K E + +R Y F+I + Y +
Sbjct: 66 SHVLAFFAASDGIVLENLAVRFMK--EIQIPEAR-AFYGFQIAIENIHSEMYSLLLEAYI 122
Query: 174 -KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ K IET+PCV +KADWAL+WI D A SF ER++AFA VEGIFFSGSF +IF
Sbjct: 123 KDQAEKSRLFNAIETIPCVARKADWALKWI-DSAGSFAERILAFACVEGIFFSGSFCAIF 181
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 182 WLKKRGLMPGLTFSNELISRDEGL 205
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D HW LT DE++FISHVLAFFAASDGIV ENL RF +E+QI EAR FYGF
Sbjct: 43 EEVDLSADSKHWETLTDDERHFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++ YIKDQ E+
Sbjct: 103 QIAIENIHSEMYSLLLEAYIKDQAEK 128
>gi|348688371|gb|EGZ28185.1| hypothetical protein PHYSODRAFT_321864 [Phytophthora sojae]
gi|348688372|gb|EGZ28186.1| hypothetical protein PHYSODRAFT_284208 [Phytophthora sojae]
Length = 384
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 131/242 (54%), Gaps = 40/242 (16%)
Query: 47 FLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQ 106
F+ +KD +Q KL S K K V + TEP L +NP RFV+FPIQ
Sbjct: 30 FVKGVNVKDEKQEEEQPKLEMSEFKRKE--------VSGELPTEPFLVENPNRFVLFPIQ 81
Query: 107 YQDIWKMYKKAEASFWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKA 149
D+W+MYKKAEASFWTAEE+DL K V+ F E A
Sbjct: 82 EHDVWQMYKKAEASFWTAEELDLVHDLKDWANLTDNERFFIKHVLAFFAASDGIVNENLA 141
Query: 150 SHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKK 194
+ NE Y F+I + Y + I + IET+PCVKKK
Sbjct: 142 MNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIETIPCVKKK 201
Query: 195 ADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
A WAL+W SS+ ER++AFA+VEGIFFSGSF SIFWLKKRGLMPGL+FSNELISRDE
Sbjct: 202 AHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDE 261
Query: 255 DL 256
+
Sbjct: 262 GM 263
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 66/79 (83%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL W LT +E++FI HVLAFFAASDGIVNENL F+ EVQ+ EARCFYGFQIA+EN+
Sbjct: 107 DLKDWANLTDNERFFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENI 166
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE+YSLLIDTYIKD E+
Sbjct: 167 HSEVYSLLIDTYIKDAVEK 185
>gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa]
gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 120/205 (58%), Gaps = 39/205 (19%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
+ EPLL +NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS
Sbjct: 4 IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWENLTPDEKHF 63
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V+ N R +K E + S +R Y F+I + Y +
Sbjct: 64 ISHVLAFFAASDGIVLENIAGRFMK--EVQVSEAR-AFYGFQIAIENIHSEMYSLLLETY 120
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I IET+PCV KKA+WALRWI D SF ER+IAFA VEGIFFSGSF +I
Sbjct: 121 IKDSTEKNRLFHAIETVPCVAKKAEWALRWI-DGGESFAERLIAFACVEGIFFSGSFCAI 179
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FWLKKRGLMPGLTFSNELISRDEGL 204
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+ HW LT DEK+FISHVLAFFAASDGIV EN+ RF +EVQ++EAR FYGF
Sbjct: 42 EEVDLSSDVGHWENLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++TYIKD E+
Sbjct: 102 QIAIENIHSEMYSLLLETYIKDSTEK 127
>gi|449139107|gb|AGE89912.1| RR2B [Spodoptera littoralis NPV]
Length = 334
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 118/208 (56%), Gaps = 32/208 (15%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV------------- 127
+ VQ N EPLLR+NPRRFV+FPI+Y DIW MYKKAEASFWT EEV
Sbjct: 2 SSVQINASMEPLLRENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDMKDWDSLK 61
Query: 128 ----DLSKVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------I 168
D K V+ F E E Y F++ + I
Sbjct: 62 ESERDFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAMENVHSEMYSLLI 121
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
Y K IETMP + KKA W+++WI + ++F ER+IAFA+VEGIFFSGSF
Sbjct: 122 DTYVRDIDEKQRLFNAIETMPTIAKKAQWSIKWIKSDTATFAERIIAFAAVEGIFFSGSF 181
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+IFW+KKRGL+PGLTFSNELISRDE L
Sbjct: 182 AAIFWMKKRGLLPGLTFSNELISRDEGL 209
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ W+ L E+ FI HVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 46 EEVDLSKDMKDWDSLKESERDFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 105
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+AMENVHSEMYSLLIDTY++D +E+
Sbjct: 106 QVAMENVHSEMYSLLIDTYVRDIDEK 131
>gi|388503744|gb|AFK39938.1| unknown [Medicago truncatula]
Length = 330
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 120/202 (59%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS
Sbjct: 7 EPLLAPNPDRFCMFPIQYPKIWEMYKKAEASFWTAEEVDLSSDLKHWQNLTDGERHFISH 66
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+V+ N R +K E + S +R Y F+I + Y + I+
Sbjct: 67 VLAFFAASDGIVLENLAGRFMK--EIQVSEAR-AFYGFQIAIENIHSEMYSLLLETYISD 123
Query: 182 G-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
IET+PC+ KKADWA++WI D + SF ER++AFA VEGIFFSGSF +IFWL
Sbjct: 124 SAEKNRLFHAIETIPCIAKKADWAMKWI-DSSDSFAERIVAFACVEGIFFSGSFCAIFWL 182
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 183 KKRGLMPGLTFSNELISRDEGL 204
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + DL HW LT E++FISHVLAFFAASDGIV ENL RF +E+Q++EAR FYGF
Sbjct: 42 EEVDLSSDLKHWQNLTDGERHFISHVLAFFAASDGIVLENLAGRFMKEIQVSEARAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++TYI D E+
Sbjct: 102 QIAIENIHSEMYSLLLETYISDSAEK 127
>gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
[Saccoglossus kowalevskii]
Length = 463
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 121/202 (59%), Gaps = 38/202 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
E LL+ N RFV+FPI+YQDIWK YKKA+ASFWT EEVDL K
Sbjct: 143 ETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDWVKLKEEERRFISH 202
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVK 174
+V+ N R + E + + +R Y F+I + I Y +
Sbjct: 203 VLAFFAASDGIVLENLVQRF--SQEVQVAEARC-FYGFQIAMENVHSEMYSLLIDAYIKE 259
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K I+ MPCVKKKADWA+ WI E SSFGER++AFA+VEGIFFSG+FASIFW
Sbjct: 260 QEEKTRLFHAIDNMPCVKKKADWAIEWIQSEESSFGERLVAFAAVEGIFFSGAFASIFWF 319
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGL+PGLTFSNELISRDE L
Sbjct: 320 KKRGLLPGLTFSNELISRDEGL 341
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W KL +E+ FISHVLAFFAASDGIV ENLV+RF+QEVQ+ EARCFYGF
Sbjct: 178 EEVDLGKDLPDWVKLKEEERRFISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGF 237
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLID YIK+QEE+
Sbjct: 238 QIAMENVHSEMYSLLIDAYIKEQEEK 263
>gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 329
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 124/203 (61%), Gaps = 39/203 (19%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EPLL +N +RF +FPIQY +W+MYKKAEASFWTAEEVDLS
Sbjct: 7 AEPLLDENDQRFTMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMKHWETLTKDEKHFVS 66
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKV 173
+V+ N +R + GE + +R Y F+I ++ I +Y
Sbjct: 67 HVLAFFAASDGIVLENLGVRFM--GEVQIPEAR-AFYGFQIAIENIHSEMYSLLIDQYIK 123
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PCVKKKADWAL+WI D + SF ER++AFA +EGIFFSGSF SI+W
Sbjct: 124 DPVEKDHLFRAIDTIPCVKKKADWALKWI-DSSDSFAERLLAFACIEGIFFSGSFCSIYW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGL 205
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW LT+DEK+F+SHVLAFFAASDGIV ENL RF EVQI EAR FYGF
Sbjct: 43 EEVDLSDDMKHWETLTKDEKHFVSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLID YIKD E+
Sbjct: 103 QIAIENIHSEMYSLLIDQYIKDPVEK 128
>gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 325
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 122/205 (59%), Gaps = 39/205 (19%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
+E EP+L +NP RF +FPI+Y +W+MYKKAEASFWTAEEVDLS
Sbjct: 1 MEQEPILAENPGRFCMFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWEALTDNERHF 60
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V+ N +R +K E + +R Y F+I + Y +
Sbjct: 61 ISHVLAFFAASDGIVLENLAVRFMK--EIQIPEAR-AFYGFQIAIENIHSEMYSLLLEAY 117
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I IET+PCV +KA+WAL+WI D + SF ER++AFA VEGIFFSGSF SI
Sbjct: 118 IKDQSEKHRLFNAIETIPCVTRKAEWALKWI-DSSGSFAERILAFACVEGIFFSGSFCSI 176
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 177 FWLKKRGLMPGLTFSNELISRDEGL 201
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + DL HW LT +E++FISHVLAFFAASDGIV ENL RF +E+QI EAR FYGF
Sbjct: 39 EEVDLSADLKHWEALTDNERHFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++ YIKDQ E+
Sbjct: 99 QIAIENIHSEMYSLLLEAYIKDQSEK 124
>gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa]
gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 121/205 (59%), Gaps = 39/205 (19%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
+ EPLL +NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS
Sbjct: 4 IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWENLTPDEKHF 63
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V+ N R +K E + S +R Y F+I + Y +
Sbjct: 64 ISHVLAFFAASDGIVLENLAGRFMK--EVQVSEAR-AFYGFQIAIENIHSEMYSLLLETY 120
Query: 179 ITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I + IET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +I
Sbjct: 121 IKDSEEKNRLFHAIETVPCVAKKARWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAI 179
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FWLKKRGLMPGLTFSNELISRDEGL 204
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+ HW LT DEK+FISHVLAFFAASDGIV ENL RF +EVQ++EAR FYGF
Sbjct: 42 EEVDLSSDIRHWENLTPDEKHFISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 102 QIAIENIHSEMYSLLLETYIKDSEEK 127
>gi|225451453|ref|XP_002269951.1| PREDICTED: ribonucleoside-diphosphate reductase small chain [Vitis
vinifera]
gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera]
Length = 329
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 123/206 (59%), Gaps = 39/206 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
++ EPLL NP RF +FPIQY ++W+MYKKAEASFWTAEEVDLS+
Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWENLTSDEKH 62
Query: 132 --------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R +K E + + +R Y F+I + Y +
Sbjct: 63 FISHILAFFAASDGIVLENLAGRFMK--EVQVAEAR-AFYGFQIAIENIHSEMYSLLLES 119
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I K I+T+PCV KKA WALRWI D + +F ER++AFA VEGIFFSGSF S
Sbjct: 120 YIKDPKEKNRLFHAIDTIPCVAKKAQWALRWI-DGSETFAERLLAFACVEGIFFSGSFCS 178
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 179 IFWLKKRGLMPGLTFSNELISRDEGL 204
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D W LT DEK+FISH+LAFFAASDGIV ENL RF +EVQ+ EAR FYGF
Sbjct: 42 EEVDLSQDQRQWENLTSDEKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL+++YIKD +E+
Sbjct: 102 QIAIENIHSEMYSLLLESYIKDPKEK 127
>gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
nagariensis]
gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
nagariensis]
Length = 400
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 132/227 (58%), Gaps = 42/227 (18%)
Query: 68 SPIK-DKSTLKQ--VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
SP K +KS K ++P + + EPLL +NP RF +FPI+Y IW+MYKKAEASFWTA
Sbjct: 55 SPSKVNKSVTKHELFTSPRKSMRDPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTA 114
Query: 125 EEVDLSK----------------------------VVVTNFEIRALKTGEEKASHSRNEP 156
EEVDL +V+ N IR +K + + +
Sbjct: 115 EEVDLGDDMKHWEKLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAF--- 171
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASSF 209
Y F++ + Y + I +IET+PC+KKKA WA++WI E SSF
Sbjct: 172 YGFQVAIENIHSEMYSLLLETYIKDPIEKHKLFHSIETVPCIKKKAQWAIKWIGSE-SSF 230
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ER++AFA+VEGIFFSGSF SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 231 PERLVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGL 277
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW KL+ E++FISHVLAFFAASDGIV ENL RF +EVQ+ EAR FYGF
Sbjct: 115 EEVDLGDDMKHWEKLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGF 174
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLL++TYIKD E+
Sbjct: 175 QVAIENIHSEMYSLLLETYIKDPIEK 200
>gi|395512223|ref|XP_003760342.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
[Sarcophilus harrisii]
Length = 351
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/199 (51%), Positives = 117/199 (58%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASF--------------WTAEEVDLSKVVVT 135
EPLLR + RRFVIFPIQY DIWKMYK+A+ASF W + D +
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISH 91
Query: 136 NFEIRALKTG------EEKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
A G E+ S P Y F+I + Y + I +
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQIPEARCFYGFQILIENIHSEMYSLLIDTYIKDPQK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMPCVK+KADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPCVKRKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQI EARCFY
Sbjct: 65 TAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQIPEARCFY 124
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +EN+HSEMYSLLIDTYIKD ++R
Sbjct: 125 GFQILIENIHSEMYSLLIDTYIKDPQKR 152
>gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
17132]
gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
17132]
Length = 328
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 127/209 (60%), Gaps = 42/209 (20%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALK 143
+E + EPLL D+P RFVIFPI++ DIW+ YKKAEASFWTAEE+DLS+ + + +L
Sbjct: 4 EELRQIEPLLMDDPTRFVIFPIKHNDIWEFYKKAEASFWTAEELDLSQ---DHKDWASLN 60
Query: 144 TGEEK-ASHSR----------NEP----YLFRIKLAPGGICRYKVKKGGKITGGKT---- 184
GE SH NE +L ++ A C Y + + +T
Sbjct: 61 DGERHFISHVLAFFAASDGIVNENLAVGFLSNVQYAEAK-CFYGFQIMIENIHAETYSLL 119
Query: 185 -----------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IET+PCVKKKADWA+RWI E +F ER+IAFA+VEGIFFSGS
Sbjct: 120 IDTYIKDTTERQRMLNAIETIPCVKKKADWAIRWI--EQGTFIERLIAFAAVEGIFFSGS 177
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 178 FCSIFWLKKRGLMPGLTFSNELISRDEGL 206
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D W L E++FISHVLAFFAASDGIVNENL F VQ EA+CFYGF
Sbjct: 45 EELDLSQDHKDWASLNDGERHFISHVLAFFAASDGIVNENLAVGFLSNVQYAEAKCFYGF 104
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +EN+H+E YSLLIDTYIKD ER
Sbjct: 105 QIMIENIHAETYSLLIDTYIKDTTER 130
>gi|392574724|gb|EIW67859.1| hypothetical protein TREMEDRAFT_44873 [Tremella mesenterica DSM
1558]
Length = 405
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 145/259 (55%), Gaps = 46/259 (17%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQE-----------NVETEP 91
++N P++ L L Q +K K ST V PV++ + EP
Sbjct: 19 DLNSVKPKDLLSKLKAVEQPTKHVVVDSKSISTPTPVEEPVEDVRQRFVGDLDCEEKDEP 78
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------ 133
LL++ RFV+FPI+Y++IW+MYK+A+ASFWT+EE++L+ +
Sbjct: 79 LLKETTSRFVLFPIKYREIWQMYKQAQASFWTSEEINLAPDLHDWENKLNDNERYFIEHV 138
Query: 134 ---------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-- 182
+ N + + E +A+ ++ Y F+I + Y + I
Sbjct: 139 LAFFAASDGIVNENLVERFSAEVQAAEAKCF-YGFQIMMENIHSETYSLLIDTYIKDVDR 197
Query: 183 -----KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
+ I+T+PC++KKADWALRWI D S+F ER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 198 RNYLFEAIDTIPCIRKKADWALRWITDTRSTFAERLIAFAAVEGIFFSGSFASIFWLKKR 257
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 258 GLMPGLTFSNELISRDEGL 276
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
++E I+ DL W NKL +E+YFI HVLAFFAASDGIVNENLVERF+ EVQ EA+CF
Sbjct: 110 TSEEINLAPDLHDWENKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKCF 169
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQI MEN+HSE YSLLIDTYIKD + R
Sbjct: 170 YGFQIMMENIHSETYSLLIDTYIKDVDRR 198
>gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens]
Length = 349
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 132/242 (54%), Gaps = 50/242 (20%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQY 107
L +TL ++T ++ KLS Q +V EPLL ++P RFV+FPI++
Sbjct: 4 LADSTLHNVTKDVAACKLSP----------------QRSV-AEPLLTEDPHRFVLFPIEH 46
Query: 108 QDIWKMYKKAEASFWTAEEVDLS------------------KVVVTNFEIRALKTGEEKA 149
D+W+MYKKAEASFWTAEE+DL K V+ F E A
Sbjct: 47 DDVWQMYKKAEASFWTAEEIDLCHDIKDWDQKLNDKERHFIKHVLAFFAASDGIVNENLA 106
Query: 150 SHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKK 194
+ E Y F+I + Y + I K I+TMPCV KK
Sbjct: 107 QNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRDAKEKHECLTAIDTMPCVTKK 166
Query: 195 ADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
A WALRW + +SF ER+IAFA+VEGIFFSGSF ++FWLKKRGLMPGL+FSNELISRDE
Sbjct: 167 AQWALRWCDPDRASFAERIIAFAAVEGIFFSGSFCAVFWLKKRGLMPGLSFSNELISRDE 226
Query: 255 DL 256
+
Sbjct: 227 GM 228
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E I D+ W+ KL E++FI HVLAFFAASDGIVNENL + F EVQ EARCF
Sbjct: 62 TAEEIDLCHDIKDWDQKLNDKERHFIKHVLAFFAASDGIVNENLAQNFATEVQWAEARCF 121
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSE+YSLLIDTYI+D +E+
Sbjct: 122 YGFQIAIENIHSEVYSLLIDTYIRDAKEK 150
>gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
Length = 329
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 122/205 (59%), Gaps = 39/205 (19%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
+ EPLL NP RF +FPIQY +IW+MYKKAEASFWTAEEVDLS+
Sbjct: 4 IPEEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWESLTPDEKHF 63
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V+ N R +K E + + +R Y F+I + Y +
Sbjct: 64 ISHVLAFFAASDGIVLENLAGRFMK--EVQVAEAR-AFYGFQIAIENIHSEMYSLLLETY 120
Query: 179 ITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I IET+PC+ KKA+WAL+WI D + SF ER+IAFA VEGIFFSGSF +I
Sbjct: 121 IKDSNEKNRLFHAIETVPCIAKKAEWALKWI-DGSESFAERIIAFACVEGIFFSGSFCAI 179
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FWLKKRGLMPGLTFSNELISRDEGL 204
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 71/88 (80%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW LT DEK+FISHVLAFFAASDGIV ENL RF +EVQ+ EAR FY
Sbjct: 40 TAEEVDLSQDLRHWESLTPDEKHFISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFY 99
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLL++TYIKD E+
Sbjct: 100 GFQIAIENIHSEMYSLLLETYIKDSNEK 127
>gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma
mansoni]
gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative
[Schistosoma mansoni]
Length = 365
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 123/221 (55%), Gaps = 39/221 (17%)
Query: 71 KDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
K+ S KQ S E +E EPLL+ NP RFV+FPI+Y D+W YKKA ASFWT EEVDLS
Sbjct: 25 KEVSYGKQFSVTKSE-IELEPLLKPNPHRFVLFPIEYHDVWHFYKKAVASFWTVEEVDLS 83
Query: 131 KVVVTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIK 162
K + +LK GE E+ S P Y +I
Sbjct: 84 KDFI---HWESLKVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIA 140
Query: 163 LAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIA 215
+ Y + I K I + CV KKA WAL WI D S+F ER++A
Sbjct: 141 IENIHSEMYSLLIDTYIKDSKERDFLFNAISNLTCVAKKAQWALDWIGDSKSTFAERLVA 200
Query: 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+VEG+FFSGSFA+IFWLKKRGLMPGL+FSNELISRDE L
Sbjct: 201 FAAVEGVFFSGSFAAIFWLKKRGLMPGLSFSNELISRDEGL 241
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D HW L E++FIS+VLAFFAASDGIV ENL+ERF+QEVQI E RCFYG
Sbjct: 78 EEVDLSKDFIHWESLKVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGM 137
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTYIKD +ER
Sbjct: 138 QIAIENIHSEMYSLLIDTYIKDSKER 163
>gi|344234526|gb|EGV66394.1| hypothetical protein CANTEDRAFT_112123 [Candida tenuis ATCC 10573]
Length = 423
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 123/201 (61%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------------S 130
EPLL +N +RFV+FPI+Y +IW+MYKKAEASFWTAEE+DL S
Sbjct: 97 EPLLVENTKRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNNRLNDNERFFVS 156
Query: 131 KVV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+++ + N + + E + ++ Y F+I + Y + I
Sbjct: 157 RILAFFAASDGIVNENLVENFSAEVQVPEAKC-FYGFQIMMENIHSETYSLLIDSYIKDP 215
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+P +K+KADWALRWI D + FGER++AFA+VEGIFFSGSFASIFWLK
Sbjct: 216 KEADFLFNAIETIPQIKRKADWALRWINDSDALFGERLVAFAAVEGIFFSGSFASIFWLK 275
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELI RDE L
Sbjct: 276 KRGLMPGLTFSNELICRDEGL 296
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D WN +L +E++F+S +LAFFAASDGIVNENLVE F+ EVQ+ EA+CFYG
Sbjct: 132 EEIDLGKDTHDWNNRLNDNERFFVSRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYG 191
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLID+YIKD +E
Sbjct: 192 FQIMMENIHSETYSLLIDSYIKDPKE 217
>gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
reinhardtii]
gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
reinhardtii]
Length = 394
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 131/226 (57%), Gaps = 41/226 (18%)
Query: 68 SPIKDK--STLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAE 125
SP K S L+++ ++ + EPLL +NP RF +FPI+Y IW+MYKKAEASFWTAE
Sbjct: 50 SPAKQNKGSNLRELFTSPRKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAE 109
Query: 126 EVDLSK----------------------------VVVTNFEIRALKTGEEKASHSRNEPY 157
EVDL +V+ N IR +K + + + Y
Sbjct: 110 EVDLGDDMKHWEKLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAF---Y 166
Query: 158 LFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFG 210
F++ + Y + I + +IET+PC+KKKA WA++WI + S F
Sbjct: 167 GFQVAIENIHSEMYSLLLESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWIGSD-SVFS 225
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ER++AFA+VEGIFFSGSF SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 226 ERLVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGL 271
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW KL+ E++FISHVLAFFAASDGIV ENL RF +EVQ+ EAR FYGF
Sbjct: 109 EEVDLGDDMKHWEKLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLL+++YIKD +E+
Sbjct: 169 QVAIENIHSEMYSLLLESYIKDPQEK 194
>gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 330
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 120/204 (58%), Gaps = 39/204 (19%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
+ EP+L +NP RF +FPI+Y +W+MYKKAEASFWTAEEVDLS
Sbjct: 5 QEEPILMENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWEALTDNERHFI 64
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+V+ N IR +K E + +R Y F+I + Y + I
Sbjct: 65 SHVLAFFAASDGIVLENLAIRFMK--EIQIPEAR-AFYGFQIAIENIHSEMYSLLLEAYI 121
Query: 180 TGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
IET+PCV KKA+WAL+WI A SF ER++AFA VEGIFFSGSF +IF
Sbjct: 122 KDHAEKNRLFNAIETIPCVTKKAEWALKWI-HSAGSFAERILAFACVEGIFFSGSFCAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGL 204
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D HW LT +E++FISHVLAFFAASDGIV ENL RF +E+QI EAR FYGF
Sbjct: 42 EEVDLSADSKHWEALTDNERHFISHVLAFFAASDGIVLENLAIRFMKEIQIPEARAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++ YIKD E+
Sbjct: 102 QIAIENIHSEMYSLLLEAYIKDHAEK 127
>gi|406672898|ref|ZP_11080123.1| ribonucleoside-diphosphate reductase small chain [Bergeyella
zoohelcum CCUG 30536]
gi|405587442|gb|EKB61170.1| ribonucleoside-diphosphate reductase small chain [Bergeyella
zoohelcum CCUG 30536]
Length = 329
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 119/207 (57%), Gaps = 41/207 (19%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N TEPLL +N RFVIFPIQ+ DIWK YK AEASFWTAEEVDLS
Sbjct: 5 NHMTEPLLIENKDRFVIFPIQHNDIWKFYKNAEASFWTAEEVDLSPDLHDWQNKLNDNER 64
Query: 132 ---------------VVVTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGIC 169
+V N I L+ + + Y F+I ++ I
Sbjct: 65 FFISRVLAFFAASDGIVNENLAINFLQEVQYPEARCF---YGFQIMIENIHSEMYSLLID 121
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
Y K + IET+PCV KKA+WALRWI E SF ER+IAFA+VEGIFFSGSF
Sbjct: 122 TYVKDPTEKDYLLRAIETIPCVTKKAEWALRWI--EKGSFAERLIAFAAVEGIFFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 SIFWLKKRGLMPGLTFSNELISRDEGL 206
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + DL W NKL +E++FIS VLAFFAASDGIVNENL F QEVQ EARCFYG
Sbjct: 44 EEVDLSPDLHDWQNKLNDNERFFISRVLAFFAASDGIVNENLAINFLQEVQYPEARCFYG 103
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSEMYSLLIDTY+KD E+
Sbjct: 104 FQIMIENIHSEMYSLLIDTYVKDPTEK 130
>gi|332876813|ref|ZP_08444570.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332685239|gb|EGJ58079.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 324
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 117/204 (57%), Gaps = 41/204 (20%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
TEPLL+DN RFVIFPIQ+ DIW+ YK AEASFWTAEEVDLS
Sbjct: 3 TEPLLQDNKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQNKLNDNERFFI 62
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYK 172
+V N I L+ + + Y F+I ++ I Y
Sbjct: 63 SRVLAFFAASDGIVNENLAINFLQEVQYPEARCF---YGFQIMIENIHSEMYSLLIDTYV 119
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K + IET+PCV KKA WALRWI SF ER+IAFA+VEGIFFSGSF SIF
Sbjct: 120 KDPAEKDYLLRAIETIPCVTKKAKWALRWIT--KGSFAERLIAFAAVEGIFFSGSFCSIF 177
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 178 WLKKRGLMPGLTFSNELISRDEGL 201
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 255 DLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL W NKL +E++FIS VLAFFAASDGIVNENL F QEVQ EARCFYGFQI +EN
Sbjct: 46 DLHDWQNKLNDNERFFISRVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIEN 105
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSEMYSLLIDTY+KD E+
Sbjct: 106 IHSEMYSLLIDTYVKDPAEK 125
>gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
elongisporus NRRL YB-4239]
Length = 422
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 136/230 (59%), Gaps = 35/230 (15%)
Query: 61 QQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
+Q K D + +T K ++E + EPLL++N RR+V+FPI+Y +IW+MYKKAEAS
Sbjct: 70 EQDKDQDEHDQFLTTHKAHRRQIKEAEKDEPLLKENKRRYVMFPIRYHEIWQMYKKAEAS 129
Query: 121 FWTAEEVDL-------------------SKVV--------VTNFEIRALKTGEEKASHSR 153
FWTAEE+DL S+++ + N + + E + ++
Sbjct: 130 FWTAEEIDLGKDMHDWKNKLNENERFFISRILAFFAASDGIVNENLVENFSAEVQIPEAK 189
Query: 154 NEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEA 206
+ Y F+I + Y + I K I+ +P +KKKADWA+RWI D+
Sbjct: 190 S-FYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAIDNIPQIKKKADWAIRWINDDN 248
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ F ER++AFA+VEG+FFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 249 ALFAERLVAFAAVEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 298
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ W NKL +E++FIS +LAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 134 EEIDLGKDMHDWKNKLNENERFFISRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYG 193
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 194 FQIMMENIHSETYSLLIDTYIKDPKE 219
>gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica]
Length = 418
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 136/246 (55%), Gaps = 42/246 (17%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSP-IKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQ 106
L +N L +T+NL + +L+ + + K V + + EPLL++N +RFVIFPIQ
Sbjct: 51 LTKNDLSKMTSNLAKVELTKTAEAVNNEQHKLVDDVADFDPQLEPLLKENNQRFVIFPIQ 110
Query: 107 YQDIWKMYKKAEASFWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKA 149
Y DIW+MYKKA ASFWT EEVDL K V+ F E
Sbjct: 111 YHDIWRMYKKAVASFWTTEEVDLGRDMDDWKKLKKEEQFFIKHVLAFFAASDGIVNENLV 170
Query: 150 SHSRNEP--------YLFRI-----------KLAPGGICRYKVKKGGKITGGKTIETMPC 190
+E Y F+I KL + K K G IETMP
Sbjct: 171 DRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGL----FNAIETMPA 226
Query: 191 VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 250
+KKKADWAL+WI +A + RVIAFA+VEGIFFSGSFA+IFWLKKRGLMPG+TFSNELI
Sbjct: 227 IKKKADWALKWIGADAP-YSVRVIAFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELI 285
Query: 251 SRDEDL 256
SRDE L
Sbjct: 286 SRDEGL 291
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 67/88 (76%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + D+ W KL ++E++FI HVLAFFAASDGIVNENLV+RF E+QI EAR FY
Sbjct: 127 TTEEVDLGRDMDDWKKLKKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFY 186
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI MEN+HSEMY+ LI+ + D +E+
Sbjct: 187 GFQIMMENIHSEMYAKLIENLVHDTKEK 214
>gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica]
Length = 382
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 136/246 (55%), Gaps = 42/246 (17%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSP-IKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQ 106
L +N L +T+NL + +L+ + + K V + + EPLL++N +RFVIFPIQ
Sbjct: 15 LTKNDLSKMTSNLAKVELTKTAEAVNNEQHKLVDDVADFDPQLEPLLKENNQRFVIFPIQ 74
Query: 107 YQDIWKMYKKAEASFWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKA 149
Y DIW+MYKKA ASFWT EEVDL K V+ F E
Sbjct: 75 YHDIWRMYKKAVASFWTTEEVDLGRDMDDWKKLKKEEQFFIKHVLAFFAASDGIVNENLV 134
Query: 150 SHSRNEP--------YLFRI-----------KLAPGGICRYKVKKGGKITGGKTIETMPC 190
+E Y F+I KL + K K G IETMP
Sbjct: 135 DRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGL----FNAIETMPA 190
Query: 191 VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 250
+KKKADWAL+WI +A + RVIAFA+VEGIFFSGSFA+IFWLKKRGLMPG+TFSNELI
Sbjct: 191 IKKKADWALKWIGADAP-YSVRVIAFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELI 249
Query: 251 SRDEDL 256
SRDE L
Sbjct: 250 SRDEGL 255
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 67/88 (76%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + D+ W KL ++E++FI HVLAFFAASDGIVNENLV+RF E+QI EAR FY
Sbjct: 91 TTEEVDLGRDMDDWKKLKKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFY 150
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI MEN+HSEMY+ LI+ + D +E+
Sbjct: 151 GFQIMMENIHSEMYAKLIENLVHDTKEK 178
>gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small
chain); putative [Variola major virus]
gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus]
Length = 333
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 119/214 (55%), Gaps = 35/214 (16%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW------------ 122
T K+++ V N+ EP+L NP RFVIFPIQY DIW MYKKAEASFW
Sbjct: 3 TEKKITTIV--NLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDIN 60
Query: 123 -----TAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------- 167
T +E K V+ F E A E + + G
Sbjct: 61 DWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSE 120
Query: 168 -----ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
I Y K IETMPCVKKKADWA +WI D AS +GER+IAFA+VEGI
Sbjct: 121 MYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAS-YGERLIAFAAVEGI 179
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos
saltator]
Length = 344
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 129/217 (59%), Gaps = 36/217 (16%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
+++V + N + EPLL++ P RFVIFPI+Y DIW MYKKA ASFWT EEV L K+
Sbjct: 3 AVRKVHLKEEFNPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDK 62
Query: 135 TNFEIR----------------ALKTG------------EEKASHSRNEPYLFRIKLAPG 166
++E + A G E K S +R Y F+I +
Sbjct: 63 KDWEEKLNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARC-FYGFQIAIENI 121
Query: 167 GICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASV 219
Y + I+ K IET+PCV KKA+WAL WI E+++F ER++AFA+V
Sbjct: 122 HSEMYSLLIETYISDLKEKDFLFNAIETLPCVTKKANWALNWINHESATFPERIVAFAAV 181
Query: 220 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
EGIFFSGSFA+IFWLKKRG+MPGLTFSNELISRDE L
Sbjct: 182 EGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGL 218
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 68/73 (93%)
Query: 261 KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320
KL DE+YFISHVLAFFAASDGIVNENL+ERF QEV+I+EARCFYGFQIA+EN+HSEMYS
Sbjct: 68 KLNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYS 127
Query: 321 LLIDTYIKDQEER 333
LLI+TYI D +E+
Sbjct: 128 LLIETYISDLKEK 140
>gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
Length = 335
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 124/204 (60%), Gaps = 35/204 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL--------SKV--------- 132
EP+L++N RFV+FPI+Y DIW MYK+AEASFWTAEE+DL SK+
Sbjct: 7 EPILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSSKLNDNERHFIS 66
Query: 133 -VVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK 183
V+ F E A+ +E Y F+I + Y + I +
Sbjct: 67 NVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDNE 126
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I+T+PC+KKKADWAL+WI + + SF ER++AFA+VEGIFFSGSF SIFWLKK
Sbjct: 127 QKSKLFNAIDTIPCIKKKADWALKWI-NNSDSFAERLVAFAAVEGIFFSGSFCSIFWLKK 185
Query: 237 RGLMPGLTFSNELISRDEDLSHWN 260
RGLMPGLTFSNELISRDE L H N
Sbjct: 186 RGLMPGLTFSNELISRDEGL-HCN 208
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I DL+ W+ KL +E++FIS+VLAFFAASDGIVNENL RF EVQI EARCFYG
Sbjct: 42 EEIDLAPDLNDWSSKLNDNERHFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSE YSLLIDTYIKD E++
Sbjct: 102 FQIAIENIHSETYSLLIDTYIKDNEQK 128
>gi|441498220|ref|ZP_20980420.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Fulvivirga imtechensis AK7]
gi|441438008|gb|ELR71352.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Fulvivirga imtechensis AK7]
Length = 331
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 118/205 (57%), Gaps = 34/205 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------ 131
Q EP+L++N RFV+FPI++ DIW+ YKKAEASFWTAEE+DLS+
Sbjct: 4 QATSAVEPILKENKNRFVLFPIKHDDIWQFYKKAEASFWTAEEIDLSQDLKDWNNMSDGE 63
Query: 132 -----VVVTNFEIRALKTGEEKASHSRNE------PYLFRIKLAPGGICR---------Y 171
V+ F E A H E + + ++A I Y
Sbjct: 64 RHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAIENIHSETYSLLIDTY 123
Query: 172 KVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
K IETM CVKKKADWALRWI + SF ER++AFA+VEGIFFSGSF SI
Sbjct: 124 VKDPNEKDKLFNAIETMDCVKKKADWALRWI--DEGSFQERLVAFAAVEGIFFSGSFCSI 181
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGL+FSNELISRDE L
Sbjct: 182 FWLKKRGLMPGLSFSNELISRDEGL 206
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL WN ++ E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 45 EEIDLSQDLKDWNNMSDGERHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGF 104
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLIDTY+KD E+
Sbjct: 105 QIAIENIHSETYSLLIDTYVKDPNEK 130
>gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum]
Length = 337
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 122/204 (59%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLL NPRRFV+FPI+Y DI+ MYK+A AS WT EEVDLSK +
Sbjct: 13 DQEPLLVSNPRRFVLFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHWNILNSDEKRFI 72
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR--YKVKKGGKI 179
+ N + + E + S +R+ + +++A I Y + I
Sbjct: 73 SHVLAFFAASDGIVNENLVQRFSVEVQVSEARS---FYGLQIAVENIHSEMYSLLIDTYI 129
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ + IETMP VKKKADWA+RWI S F ER++AFA+VEGIFFSGSFASIF
Sbjct: 130 SDFQEKDKMFSAIETMPFVKKKADWAIRWIESTESHFSERLVAFAAVEGIFFSGSFASIF 189
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRG+MPGLT+SNELISRDE L
Sbjct: 190 WLKKRGVMPGLTYSNELISRDEGL 213
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F + IF + K+ L T E + +D+ HWN L DEK FISHVLAFFAASD
Sbjct: 26 VLFPIEYPDIFTMYKQALASIWTV--EEVDLSKDIKHWNILNSDEKRFISHVLAFFAASD 83
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENLV+RF+ EVQ++EAR FYG QIA+EN+HSEMYSLLIDTYI D +E+
Sbjct: 84 GIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSEMYSLLIDTYISDFQEK 135
>gi|348675019|gb|EGZ14837.1| hypothetical protein PHYSODRAFT_346505 [Phytophthora sojae]
Length = 386
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 125/228 (54%), Gaps = 40/228 (17%)
Query: 61 QQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
+Q KL S K K V ++ EP L NP RFV+FPIQ D+W+MYKKAEAS
Sbjct: 46 EQPKLEMSEYKRKE--------VNGELQPEPYLVSNPNRFVLFPIQEHDVWQMYKKAEAS 97
Query: 121 FWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKASHSRNEP------- 156
FWTAEE+DL K V+ F E A + NE
Sbjct: 98 FWTAEELDLVHDLNDWQKLTDNERFFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARC 157
Query: 157 -YLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASS 208
Y F+I + Y + I + IET+PCVKKKA WAL+W SS
Sbjct: 158 FYGFQIAIENIHAEVYSLLIDTYIKDTMEKNHLLRAIETIPCVKKKAHWALKWCDPRVSS 217
Query: 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ ER++AFA+VEGIFFSGSF SIFWLKKRGLMPGL+FSNELISRDE +
Sbjct: 218 YPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGM 265
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL+ W KLT +E++FI HVLAFFAASDGIVNENL F+ EVQ+ EARCFYGFQIA+EN+
Sbjct: 109 DLNDWQKLTDNERFFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENI 168
Query: 315 HSEMYSLLIDTYIKDQEER 333
H+E+YSLLIDTYIKD E+
Sbjct: 169 HAEVYSLLIDTYIKDTMEK 187
>gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
Length = 424
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 143/245 (58%), Gaps = 49/245 (20%)
Query: 60 LQQSKLSDS--PIKDKSTLKQVSAPVQENVETE------------PLLRDNPRRFVIFPI 105
L + KL+D+ PIK+ + +A ++ V + PLL + RRFV+FPI
Sbjct: 50 LTKGKLADTTKPIKESTPATDAAADSEDQVHGKFVGDVDLPEEEEPLLVETSRRFVLFPI 109
Query: 106 QYQDIWKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFE 138
++ +IW+MYKKAEASFWTAEE+DLSK + + N
Sbjct: 110 RFHEIWQMYKKAEASFWTAEEIDLSKDLHDWDNKLNDNERHFISHVLAFFAASDGIVNEN 169
Query: 139 IRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCV 191
+ + E +A+ +R Y F+I + Y + I + +ET+P V
Sbjct: 170 LVERFSSEVQAAEARC-FYGFQIMMENIHSETYSLLIDTYIREPEQREYLFDAVETIPVV 228
Query: 192 KKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 251
K+KADWALRWI+D+ ++F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS
Sbjct: 229 KQKADWALRWISDKRATFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 288
Query: 252 RDEDL 256
RDE L
Sbjct: 289 RDEGL 293
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 129 EEIDLSKDLHDWDNKLNDNERHFISHVLAFFAASDGIVNENLVERFSSEVQAAEARCFYG 188
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI++ E+R
Sbjct: 189 FQIMMENIHSETYSLLIDTYIREPEQR 215
>gi|356558708|ref|XP_003547645.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
[Glycine max]
Length = 330
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 118/210 (56%), Gaps = 47/210 (22%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
++ EPLL NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWDSLTDGERH 62
Query: 132 --------------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPG 166
+V+ N E RA + + +E Y ++
Sbjct: 63 FVSHVLAFFAASDGIVLENLAGRFTKEIQIPEARAFYGFQIAIENIHSEMYSLLLE---- 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
Y K + I+T+PCV KKA WALRWI D + SF ER++AFA VEGIFFSG
Sbjct: 119 ---TYIKDSSQKSHLFRAIDTIPCVTKKAQWALRWI-DSSDSFAERLVAFACVEGIFFSG 174
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SF ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 175 SFCAVFWLKKRGLMPGLTFSNELISRDEGL 204
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 72/88 (81%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW+ LT E++F+SHVLAFFAASDGIV ENL RFT+E+QI EAR FY
Sbjct: 40 TAEEVDLSQDLRHWDSLTDGERHFVSHVLAFFAASDGIVLENLAGRFTKEIQIPEARAFY 99
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLL++TYIKD ++
Sbjct: 100 GFQIAIENIHSEMYSLLLETYIKDSSQK 127
>gi|356571527|ref|XP_003553928.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
[Glycine max]
Length = 329
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 120/206 (58%), Gaps = 39/206 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
++ EPLL NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWDSLTDGERH 62
Query: 132 --------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R T E + +R Y F+I + Y +
Sbjct: 63 FVTHVLAFFAASDGIVLENLAGRF--TKEIQLPEAR-AFYGFQIAIENIHSEMYSLLLET 119
Query: 178 KITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I + I+T+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +
Sbjct: 120 YIKDSDQKNHLFRAIDTIPCVAKKAQWALRWI-DSSDSFAERLVAFACVEGIFFSGSFCA 178
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 179 IFWLKKRGLMPGLTFSNELISRDEGL 204
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 73/88 (82%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW+ LT E++F++HVLAFFAASDGIV ENL RFT+E+Q+ EAR FY
Sbjct: 40 TAEEVDLSQDLRHWDSLTDGERHFVTHVLAFFAASDGIVLENLAGRFTKEIQLPEARAFY 99
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLL++TYIKD +++
Sbjct: 100 GFQIAIENIHSEMYSLLLETYIKDSDQK 127
>gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
Length = 323
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 117/201 (58%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EP+L++N RFVIFPIQ+ DIW+ YKKAEASFWTAEEVDLS
Sbjct: 2 NEPILQNNKNRFVIFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQNKLNKDERYFI 61
Query: 132 -VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
V+ F E A + E Y F+I + Y + I
Sbjct: 62 SHVLAFFAASDGIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIKDP 121
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+PCV KKADWAL WI E+ +F ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 122 KEKDHLLRAIETIPCVGKKADWALEWI--ESDNFAERLIAFAAVEGIFFSGSFCSIFWLK 179
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 180 KRGLMPGLTFSNELISRDEGL 200
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + D++ W NKL +DE+YFISHVLAFFAASDGIVNENL F QEVQ EAR FYG
Sbjct: 38 EEVDLSSDMNDWQNKLNKDERYFISHVLAFFAASDGIVNENLAVNFVQEVQYPEARFFYG 97
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSEMYSLLIDTYIKD +E+
Sbjct: 98 FQIMIENIHSEMYSLLIDTYIKDPKEK 124
>gi|297209|emb|CAA48969.1| C8L [Variola virus]
gi|745144|prf||2015436AF C8L gene
Length = 333
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 118/214 (55%), Gaps = 35/214 (16%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW------------ 122
T K+++ V N+ EP+L NP RFVIFPIQY DIW MYKKAEASFW
Sbjct: 3 TEKKITTIV--NLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDIN 60
Query: 123 -----TAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------- 167
T +E K V+ F E A E + + G
Sbjct: 61 DWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSE 120
Query: 168 -----ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
I Y K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGI
Sbjct: 121 MYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGI 179
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|387592558|gb|EIJ87582.1| ribonucleotide reductase small subunit RnrA [Nematocida parisii
ERTm3]
gi|387595184|gb|EIJ92809.1| ribonucleotide reductase small subunit RnrA [Nematocida parisii
ERTm1]
Length = 343
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 133/230 (57%), Gaps = 38/230 (16%)
Query: 60 LQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEA 119
+Q+S + ++P + K V+ E V EP+L+++ RFVIFPI++ DIW MYK A A
Sbjct: 1 MQESTIQNTP---RQAEKTVARSNTEEV-YEPILQESNNRFVIFPIEHHDIWAMYKDAVA 56
Query: 120 SFWTAEEVDLSK------------------VV--------VTNFEIRALKTGEEKASHSR 153
FWTAEEVDLS V+ + N + E + S +R
Sbjct: 57 VFWTAEEVDLSNDQADWEKLNANERHFISYVLAFFAASDGIVNENLVERFASEVQISEAR 116
Query: 154 NEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEA 206
Y F+I + Y + I + +E +P +KKKADWALRWI+D+
Sbjct: 117 C-FYGFQIMIENIHAEMYSLLIDTYIKDTAEKNFLFQAMENIPVIKKKADWALRWISDKE 175
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SSF +R++AFA VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 176 SSFADRLVAFACVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 225
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D + W KL +E++FIS+VLAFFAASDGIVNENLVERF EVQI+EARCFYGF
Sbjct: 62 EEVDLSNDQADWEKLNANERHFISYVLAFFAASDGIVNENLVERFASEVQISEARCFYGF 121
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +EN+H+EMYSLLIDTYIKD E+
Sbjct: 122 QIMIENIHAEMYSLLIDTYIKDTAEK 147
>gi|377830065|ref|YP_005296225.1| unnamed protein product [Cotia virus SPAn232]
gi|377814308|gb|AFB76927.1| ribonucleotide reductase small subunit [Cotia virus SPAn232]
Length = 331
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 124/202 (61%), Gaps = 32/202 (15%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRA 141
++TE +L+++ RFVIFPIQ+ DIW MYK+A ASFWT +EVDLSK + ++N E
Sbjct: 9 MDTEYILKESSDRFVIFPIQHNDIWTMYKRALASFWTVDEVDLSKDINDWKKLSNDERHF 68
Query: 142 LK------------TGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITG 181
+K E A N+ Y F+I + Y + IT
Sbjct: 69 IKYVLAFFAASDGIVNENLAKRFFNDVQLSEARCFYGFQIAIENIHSEMYSLLIDTYITD 128
Query: 182 G-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IET+ CVK KADW +WI+D +S+FG R++AFA+VEGIFFSGSFA+IFW+
Sbjct: 129 SEEKNFLLKAIETIECVKLKADWTKKWISDYSSTFGTRLVAFAAVEGIFFSGSFAAIFWI 188
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 189 KKRGLMPGLTFSNELISRDEGL 210
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
Query: 211 ERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFI 270
E ++ +S + F I+ + KR L T +S+D ++ W KL+ DE++FI
Sbjct: 12 EYILKESSDRFVIFPIQHNDIWTMYKRALASFWTVDEVDLSKD--INDWKKLSNDERHFI 69
Query: 271 SHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQ 330
+VLAFFAASDGIVNENL +RF +VQ++EARCFYGFQIA+EN+HSEMYSLLIDTYI D
Sbjct: 70 KYVLAFFAASDGIVNENLAKRFFNDVQLSEARCFYGFQIAIENIHSEMYSLLIDTYITDS 129
Query: 331 EER 333
EE+
Sbjct: 130 EEK 132
>gi|358333482|dbj|GAA27391.2| ribonucleoside-diphosphate reductase subunit M2 [Clonorchis
sinensis]
Length = 492
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 121/214 (56%), Gaps = 43/214 (20%)
Query: 79 VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNF- 137
VS P +E EPLL+ NP RFV+FPIQY D+W+ YKKA ASFWT EEVDLSK +F
Sbjct: 162 VSKP---ELELEPLLKPNPHRFVLFPIQYHDVWQFYKKAVASFWTVEEVDLSK----DFS 214
Query: 138 EIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAPGGIC 169
+ +LK GE E+ S P Y +I +
Sbjct: 215 DWNSLKVGERHFISYVLAFFAASDGIVLENLVERFSQEVQVPEVRCFYGMQIAIENIHSE 274
Query: 170 RYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I I + CV +KA WAL WI D S+F ER++AFA+VEGI
Sbjct: 275 MYSLLIDTYIKDPTERDFLFNAISNLECVAQKAQWALNWIGDTHSTFAERIVAFAAVEGI 334
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 335 FFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 368
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D S WN L E++FIS+VLAFFAASDGIV ENLVERF+QEVQ+ E RCFYG
Sbjct: 205 EEVDLSKDFSDWNSLKVGERHFISYVLAFFAASDGIVLENLVERFSQEVQVPEVRCFYGM 264
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTYIKD ER
Sbjct: 265 QIAIENIHSEMYSLLIDTYIKDPTER 290
>gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
strain CL Brener]
gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative
[Trypanosoma cruzi]
Length = 337
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 120/205 (58%), Gaps = 33/205 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------- 130
Q + EPLLR+NP R+VIFPI+Y DIWK YK+AE+S WT EE+DLS
Sbjct: 11 QSQEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMNEGE 70
Query: 131 ----KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGK 178
K V+ F E A E Y F+I + Y V
Sbjct: 71 KFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTY 130
Query: 179 ITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
IT + I T+PC++KKA+WA+RWI +SSF ER++AFA+VEGIFFSGSF ++
Sbjct: 131 ITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS-SSSFAERLVAFAAVEGIFFSGSFCAL 189
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 190 FWLKKRGLMPGLTFSNELISRDEGL 214
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL+ W K+ EK+FI HVLAFFAASDGIV ENL +RF EVQ+ E RCFYGF
Sbjct: 52 EEIDLSSDLADWEKMNEGEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVHSE YS+L+DTYI D EE+
Sbjct: 112 QIAIENVHSETYSVLLDTYITDTEEK 137
>gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
Length = 331
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 119/201 (59%), Gaps = 34/201 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFV+FPIQ++DIW+ YK AEASFWTAEE+DLS
Sbjct: 8 QDEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWENLTEGETHFI 67
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
K V+ F E A + E Y F+I + Y + +
Sbjct: 68 KHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLLIDTYVKDN 127
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K I+TM CVKKKADWALRWI + ++ ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 128 KEKDKLFNAIDTMDCVKKKADWALRWI--DEGNYAERLIAFAAVEGIFFSGSFCSIFWLK 185
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 186 KRGLMPGLTFSNELISRDEGL 206
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D W LT E +FI HVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 45 EEIDLSQDQKDWENLTEGETHFIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGF 104
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSE YSLLIDTY+KD +E+
Sbjct: 105 QIAMENVHSETYSLLIDTYVKDNKEK 130
>gi|407839735|gb|EKG00364.1| ribonucleoside-diphosphate reductase small chain, putative
[Trypanosoma cruzi]
Length = 337
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 120/205 (58%), Gaps = 33/205 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------- 130
Q + EPLLR+NP R+VIFPI+Y DIWK YK+AE+S WT EE+DLS
Sbjct: 11 QSQEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMNEGE 70
Query: 131 ----KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGK 178
K V+ F E A E Y F+I + Y V
Sbjct: 71 KFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTY 130
Query: 179 ITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
IT + I T+PC++KKA+WA+RWI +SSF ER++AFA+VEGIFFSGSF ++
Sbjct: 131 ITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS-SSSFAERLVAFAAVEGIFFSGSFCAL 189
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 190 FWLKKRGLMPGLTFSNELISRDEGL 214
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL+ W K+ EK+FI HVLAFFAASDGIV ENL +RF EVQ+ E RCFYGF
Sbjct: 52 EEIDLSSDLADWEKMNEGEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVHSE YS+L+DTYI D EE+
Sbjct: 112 QIAIENVHSETYSVLLDTYITDTEEK 137
>gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
16823]
gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
16823]
Length = 324
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 117/201 (58%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L +N RFV+FPIQ++DIW YKKAEASFWTAEE+DLS
Sbjct: 4 AEPILSENKNRFVLFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWETKLSDDERHFV 63
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
K V+ F E A H E Y F++ + Y + I
Sbjct: 64 KHVLAFFAASDGIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTYIKDQ 123
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K ++T+ CV+KKADWALRWI + SF ER++AFA+VEGIFFSGSF SIFWLK
Sbjct: 124 KEKNHLFNALDTIDCVRKKADWALRWI--DNGSFAERLVAFAAVEGIFFSGSFCSIFWLK 181
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL+FSNELISRDE L
Sbjct: 182 KRGLMPGLSFSNELISRDEGL 202
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I DL W KL+ DE++F+ HVLAFFAASDGIVNENL E F EVQ TEA+ FYG
Sbjct: 40 EEIDLSPDLIDWETKLSDDERHFVKHVLAFFAASDGIVNENLAEHFLAEVQYTEAKFFYG 99
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQ+AMEN+HSE YSLLIDTYIKDQ+E+
Sbjct: 100 FQVAMENIHSETYSLLIDTYIKDQKEK 126
>gi|343470797|emb|CCD16606.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343476067|emb|CCD12726.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 341
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 131/230 (56%), Gaps = 42/230 (18%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------- 131
A VQ V EPLL++NP R+V+FPI+Y DIWKMYK+AE+S WT EE+DL
Sbjct: 14 AAVQ--VAEEPLLKENPGRYVLFPIKYHDIWKMYKEAESSIWTVEEIDLGNDMVDWEKLD 71
Query: 132 -------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYK 172
+V+ N R + E + +R Y F+I + Y
Sbjct: 72 NGERHFIKHVLAFFAASDGIVLENLAQRFM--SEVQVPEARC-FYGFQIAIENVHSETYS 128
Query: 173 VKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
V IT + I T+PC+K+KADWA+RWI + SSF R++AFA+VEGIFFS
Sbjct: 129 VLIDTYITDTEEKNNLLNAISTIPCIKRKADWAIRWIGCD-SSFATRLVAFAAVEGIFFS 187
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLA 275
GSF ++FWLKKRGLMPGLTFSNELISRDE L EKY I H L+
Sbjct: 188 GSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY-IKHKLS 236
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W KL E++FI HVLAFFAASDGIV ENL +RF EVQ+ EARCFYGF
Sbjct: 56 EEIDLGNDMVDWEKLDNGERHFIKHVLAFFAASDGIVLENLAQRFMSEVQVPEARCFYGF 115
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVHSE YS+LIDTYI D EE+
Sbjct: 116 QIAIENVHSETYSVLIDTYITDTEEK 141
>gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa]
Length = 333
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 112/203 (55%), Gaps = 33/203 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW-----------------TAEEVD 128
N+ EP+L NP RFVIFPIQY DIW MYKKAEASFW T +E
Sbjct: 12 NLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDWNKLTPDEKY 71
Query: 129 LSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKV 173
K V+ F E A E + + G I Y
Sbjct: 72 FIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVK 131
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFW
Sbjct: 132 DSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFW 190
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGL 213
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 51 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 111 QMAIENIHSEMYSLLIDTYVKDSNEK 136
>gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans]
gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans CBS 6340]
Length = 403
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 123/207 (59%), Gaps = 33/207 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
++E + EPLL +N RRFV+FPI+Y +IW+ YK+AEASFWTAEE+DLSK
Sbjct: 71 LKEMEKEEPLLMENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWNNRMNE 130
Query: 132 -------VVVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKG 176
V+ F E E S P Y F+I + Y +
Sbjct: 131 NERFFISRVIAFFAASDGIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLID 190
Query: 177 GKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I K IET+P +K+KA+WA+RWI DE + F ER++AFA+VEG+FFSGSFA
Sbjct: 191 TYIKDPKESDFLFNAIETIPQIKEKAEWAIRWIQDEDALFAERLVAFAAVEGVFFSGSFA 250
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKK+GLMPGLTFSNELI RDE L
Sbjct: 251 AIFWLKKKGLMPGLTFSNELICRDEGL 277
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +E++FIS V+AFFAASDGIVNENLVE F+ EVQ EA+CFYG
Sbjct: 113 EEIDLSKDLHDWNNRMNENERFFISRVIAFFAASDGIVNENLVENFSAEVQSPEAKCFYG 172
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 173 FQIMMENIHSETYSLLIDTYIKDPKE 198
>gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum
PN500]
Length = 335
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 123/200 (61%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------------KVVVT 135
EP+L++N RFV+FPI+Y DIW+MYKKAEASFWTAEE+DL+ + +T
Sbjct: 7 EPILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWENKLNDNERHFIT 66
Query: 136 N----FEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK 183
N F E A+ +E Y F+I + Y + I +
Sbjct: 67 NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDSE 126
Query: 184 T-------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
T I+T+P VKKKADWALRWI++ + SF ER++AFA+VEGIFFSGSF SIFWLKK
Sbjct: 127 TKRNIFHAIDTIPAVKKKADWALRWISN-SKSFAERLVAFAAVEGIFFSGSFCSIFWLKK 185
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLM GLTFSNELISRDE L
Sbjct: 186 RGLMHGLTFSNELISRDEGL 205
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 80/113 (70%), Gaps = 3/113 (2%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAAS 280
+ F +A I+ + K+ ++ E I D+ W NKL +E++FI++VLAFFAAS
Sbjct: 18 VLFPIKYADIWQMYKKA--EASFWTAEEIDLAGDIGDWENKLNDNERHFITNVLAFFAAS 75
Query: 281 DGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
DGIVNENL +F EVQI EARCFYGFQIA+EN+HSE YSLLIDTYIKD E +
Sbjct: 76 DGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDSETK 128
>gi|404450556|ref|ZP_11015537.1| ribonucleotide reductase subunit beta [Indibacter alkaliphilus LW1]
gi|403763776|gb|EJZ24719.1| ribonucleotide reductase subunit beta [Indibacter alkaliphilus LW1]
Length = 326
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 118/201 (58%), Gaps = 34/201 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
+ EP+L++N RFV+FPIQ+ DIW+ YKKAEASFWTAEE+DLS+
Sbjct: 3 QVEPILQENSGRFVLFPIQHDDIWQYYKKAEASFWTAEEIDLSQDLKDWKNLNDGERHFI 62
Query: 132 -VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
V+ F E A H +E Y F+I + Y + I
Sbjct: 63 SHVLAFFAASDGIVNENLAEHFVSEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKDN 122
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IE + CVKKKADWALRWI + +F ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 123 VERDKLLNAIEHIDCVKKKADWALRWI--DNGTFQERLIAFAAVEGIFFSGSFCSIFWLK 180
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 181 KRGLMPGLTFSNELISRDEGL 201
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 40 EEIDLSQDLKDWKNLNDGERHFISHVLAFFAASDGIVNENLAEHFVSEVQYTEAKFFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIKD ER
Sbjct: 100 QIAMENIHSETYSLLIDTYIKDNVER 125
>gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
Length = 321
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 119/200 (59%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL ++ RFVIFPI Y DIW MYKKA ASFWT EEVDLSK +
Sbjct: 2 EPLLVESNNRFVIFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWKKLTDNERYFIKN 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
+ N + E + S +R Y F+I + Y + IT
Sbjct: 62 ILAFFAASDGIVNENLAQRFYSEVQCSEARC-FYGFQIAIENIHSEMYSLLIDTYITDVD 120
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K I+T+ CVK+KA WA +WI D+ SS+GER++AFA+VEGIFFSG+FASIFWLKK
Sbjct: 121 EKNHLLKAIDTIDCVKEKAKWAEKWILDKESSYGERLVAFAAVEGIFFSGAFASIFWLKK 180
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 181 RGLMPGLTFSNELISRDEGL 200
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 72/88 (81%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL W KLT +E+YFI ++LAFFAASDGIVNENL +RF EVQ +EARCFY
Sbjct: 35 TTEEVDLSKDLLDWKKLTDNERYFIKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFY 94
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLLIDTYI D +E+
Sbjct: 95 GFQIAIENIHSEMYSLLIDTYITDVDEK 122
>gi|390945295|ref|YP_006409056.1| ribonucleotide reductase subunit beta [Belliella baltica DSM 15883]
gi|390418723|gb|AFL86301.1| ribonucleotide reductase, beta subunit [Belliella baltica DSM
15883]
Length = 326
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 119/201 (59%), Gaps = 34/201 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
+ EP+L++N RFV+FPIQ+ DIW+ YKKAEASFWTAEE+DLS+
Sbjct: 3 QYEPILQENKNRFVLFPIQHNDIWQYYKKAEASFWTAEEIDLSQDLSDWKNLNDGERHFI 62
Query: 132 -VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
V+ F E A H +E Y F+I + Y + I
Sbjct: 63 SHVLAFFAASDGIVNENLAEHFVSEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKDN 122
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IE + CVKKKA+WALRWI + SF ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 123 QERDKLLNAIEHIDCVKKKAEWALRWI--DNGSFQERLIAFAAVEGIFFSGSFCSIFWLK 180
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 181 KRGLMPGLTFSNELISRDEGL 201
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DLS W L E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 40 EEIDLSQDLSDWKNLNDGERHFISHVLAFFAASDGIVNENLAEHFVSEVQYTEAKFFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIKD +ER
Sbjct: 100 QIAMENIHSETYSLLIDTYIKDNQER 125
>gi|75224904|sp|Q6Y657.1|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small
chain B; AltName: Full=Ribonucleoside-diphosphate
reductase R2B subunit; AltName: Full=Ribonucleotide
reductase small subunit B
gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana]
Length = 333
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 119/203 (58%), Gaps = 40/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EP+L P RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 7 EPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIK 66
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + + S +R Y F+I + Y + I
Sbjct: 67 HVLAFFAASDGIVLENLSTRFM--SDVQISEAR-AFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IET+PCV KKA+WA++WI + + SF ER++AFA VEGIFFSGSF SIFW
Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWI-NGSQSFAERIVAFACVEGIFFSGSFCSIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGL 205
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W N LT DE++FI HVLAFFAASDGIV ENL RF +VQI+EAR FYG
Sbjct: 42 EEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSEMYSLL+DTYIKD +ER
Sbjct: 102 FQIAIENIHSEMYSLLLDTYIKDNKER 128
>gi|385302064|gb|EIF46214.1| ribonucleoside-diphosphate reductase small chain [Dekkera
bruxellensis AWRI1499]
Length = 409
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 121/204 (59%), Gaps = 39/204 (19%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
+EPLL++N RFV+FPIQY DIW+MYKKAEASFWTAEE+DLSK
Sbjct: 85 SEPLLKENIHRFVMFPIQYDDIWQMYKKAEASFWTAEEIDLSKDLTDWNNKMNANERYFI 144
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+V N +K + + + Y F+I + Y + I
Sbjct: 145 SRVLAFFAASDGIVDENLAQNFMKQVQLPEARAF---YGFQIMVENIHSETYSLLLETYI 201
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
T K I T+P +K+KA WALRWI ++ + + ER++AFA++EG+FFSGSFASIF
Sbjct: 202 TDKKESDYLFNAIHTIPPIKEKALWALRWINNDDALYAERLVAFAAIEGVFFSGSFASIF 261
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELI RDE L
Sbjct: 262 WLKKRGLMPGLTFSNELICRDEGL 285
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL+ WN K+ +E+YFIS VLAFFAASDGIV+ENL + F ++VQ+ EAR FYG
Sbjct: 121 EEIDLSKDLTDWNNKMNANERYFISRVLAFFAASDGIVDENLAQNFMKQVQLPEARAFYG 180
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLL++TYI D++E
Sbjct: 181 FQIMVENIHSETYSLLLETYITDKKE 206
>gi|348665308|gb|EGZ05139.1| hypothetical protein PHYSODRAFT_348632 [Phytophthora sojae]
gi|348675010|gb|EGZ14828.1| hypothetical protein PHYSODRAFT_560974 [Phytophthora sojae]
Length = 386
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 125/228 (54%), Gaps = 40/228 (17%)
Query: 61 QQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
+Q KL S K K V ++ EP L NP RFV+FPIQ D+W+MYKKAEAS
Sbjct: 46 EQPKLEMSEYKRKE--------VNGELQPEPYLVSNPNRFVLFPIQEHDVWQMYKKAEAS 97
Query: 121 FWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKASHSRNEP------- 156
FWTAEE+DL K V+ F E A + NE
Sbjct: 98 FWTAEELDLVHDLNDWQKLTDNERFFIKHVLAFFAASDGIVNENLAMNFSNEVQVPKARC 157
Query: 157 -YLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASS 208
Y F+I + Y + I + IET+PCVKKKA WAL+W SS
Sbjct: 158 FYGFQIAIENIHAEVYSLLIDTYIKDTMEKNHLLRAIETIPCVKKKAHWALKWCDPRVSS 217
Query: 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ ER++AFA+VEGIFFSGSF SIFWLKKRGLMPGL+FSNELISR+E +
Sbjct: 218 YPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRNEGM 265
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL+ W KLT +E++FI HVLAFFAASDGIVNENL F+ EVQ+ +ARCFYGFQIA+EN+
Sbjct: 109 DLNDWQKLTDNERFFIKHVLAFFAASDGIVNENLAMNFSNEVQVPKARCFYGFQIAIENI 168
Query: 315 HSEMYSLLIDTYIKDQEER 333
H+E+YSLLIDTYIKD E+
Sbjct: 169 HAEVYSLLIDTYIKDTMEK 187
>gi|255037048|ref|YP_003087669.1| ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
18053]
gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
18053]
Length = 331
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 122/205 (59%), Gaps = 34/205 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------ 131
QE EPLL ++P RFV+FPI++ DIW+MYK+ EASFWTAEE+DLS+
Sbjct: 3 QELSRQEPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLSDGE 62
Query: 132 -----VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGK 178
V+ F E A + +E Y F+I + Y +
Sbjct: 63 RHFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTY 122
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I + IET+PCV+KKADWAL+WI ++ F ER+IAFA+VEGIFFSGSF SI
Sbjct: 123 IKDSAEKDRLLRAIETIPCVQKKADWALKWI--DSPVFAERIIAFAAVEGIFFSGSFCSI 180
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGL+FSNELISRDE L
Sbjct: 181 FWLKKRGLMPGLSFSNELISRDEGL 205
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 67/88 (76%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E I +D+ W L+ E++FISHVLAFFAASDGIVNENL F EVQ EA+CFY
Sbjct: 42 TAEEIDLSQDMKDWENLSDGERHFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFY 101
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSE YSLLIDTYIKD E+
Sbjct: 102 GFQIAMENIHSETYSLLIDTYIKDSAEK 129
>gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
lyrata]
gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
lyrata]
Length = 333
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 119/203 (58%), Gaps = 40/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EP+L P RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 7 EPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLSNDERHFIK 66
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + + S +R Y F+I + Y + I
Sbjct: 67 HVLAFFAASDGIVLENLSTRFM--SDVQISEAR-AFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IET+PCV KKA+WA++WI + + SF ER++AFA VEGIFFSGSF SIFW
Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWI-NGSQSFAERIVAFACVEGIFFSGSFCSIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGL 205
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W N L+ DE++FI HVLAFFAASDGIV ENL RF +VQI+EAR FYG
Sbjct: 42 EEVDLSQDNRDWENSLSNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSEMYSLL+DTYIKD +ER
Sbjct: 102 FQIAIENIHSEMYSLLLDTYIKDNKER 128
>gi|407406733|gb|EKF30906.1| ribonucleoside-diphosphate reductase small chain, putative
[Trypanosoma cruzi marinkellei]
Length = 337
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 119/205 (58%), Gaps = 33/205 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------- 130
Q + EPLLR+NP R+VIFPI+Y DIWK YK+AE+S WT EE+DLS
Sbjct: 11 QSQEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMSEGE 70
Query: 131 ----KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGK 178
K V+ F E A E Y F+I + Y V
Sbjct: 71 RFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDMY 130
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
IT I T+PC++KKA+WA+RWI +SSF ER++AFA+VEGIFFSGSF ++
Sbjct: 131 ITDPTEKDRMLHAISTIPCIQKKANWAIRWIRS-SSSFAERLVAFAAVEGIFFSGSFCAL 189
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 190 FWLKKRGLMPGLTFSNELISRDEGL 214
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL+ W K++ E++FI HVLAFFAASDGIV ENL +RF EVQ+ E RCFYGF
Sbjct: 52 EEIDLSSDLADWEKMSEGERFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVHSE YS+L+D YI D E+
Sbjct: 112 QIAIENVHSETYSVLLDMYITDPTEK 137
>gi|388508294|gb|AFK42213.1| unknown [Lotus japonicus]
Length = 351
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 128/227 (56%), Gaps = 39/227 (17%)
Query: 65 LSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
L + P + ++ + V A + E EP+L + +RF +FPI+Y+ +W+MYKKA+ASFWTA
Sbjct: 4 LENGPARKETKQQLVPAQTEHEHEQEPILMEQTQRFCMFPIRYKQVWEMYKKAQASFWTA 63
Query: 125 EEVDLS----------------------------KVVVTNFEIRALKTGEEKASHSRNEP 156
EEVDL+ +V+ N R L + + +
Sbjct: 64 EEVDLTYDVQHWATLSNSEKHFITHVLAFFAASDGIVLENLAARFLNDVQIPEARAF--- 120
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I + IE +PCV +KA+WAL WI + ++SF
Sbjct: 121 YGFQIAMENIHSEMYSLLLETLIKDSREKHRLFNAIENLPCVARKAEWALNWI-NSSTSF 179
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ER++AFA +EGIFFSGSF SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 AERLVAFACIEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGL 226
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 64/79 (81%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D+ HW L+ EK+FI+HVLAFFAASDGIV ENL RF +VQI EAR FYGFQIAMEN+
Sbjct: 71 DVQHWATLSNSEKHFITHVLAFFAASDGIVLENLAARFLNDVQIPEARAFYGFQIAMENI 130
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++T IKD E+
Sbjct: 131 HSEMYSLLLETLIKDSREK 149
>gi|343428030|emb|CBQ71554.1| probable small subunit of ribonucleotide reductase [Sporisorium
reilianum SRZ2]
Length = 425
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 121/193 (62%), Gaps = 35/193 (18%)
Query: 98 RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------------ 133
RRFV+FPI++ +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 104 RRFVLFPIRFNEIWQMYKKAEASFWTAEEIDLSKDLHDWDNKLNDNERHFISHVLAFFAA 163
Query: 134 ---VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK------- 183
+ N + + E +A+ +R Y F+I + Y + I +
Sbjct: 164 SDGIVNENLVERFSSEVQAAEARC-FYGFQIMMENIHSETYSLLIDTYIREPEQREFLFD 222
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+P VK+KADWALRWI+D+ ++F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 223 AVETIPVVKQKADWALRWISDKRATFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 282
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 283 TFSNELISRDEGL 295
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 131 EEIDLSKDLHDWDNKLNDNERHFISHVLAFFAASDGIVNENLVERFSSEVQAAEARCFYG 190
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI++ E+R
Sbjct: 191 FQIMMENIHSETYSLLIDTYIREPEQR 217
>gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
marina ATCC 23134]
gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
marina ATCC 23134]
Length = 330
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 118/207 (57%), Gaps = 41/207 (19%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N +EPLL RFV+FPIQ DIW+MYK+AEASFWTAEE+DL++
Sbjct: 3 NTVSEPLLESVDNRFVLFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDEKLNDDER 62
Query: 132 ---------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKG 176
+V N + L EE S Y F++ + Y +
Sbjct: 63 HFITHVLAFFAASDGIVNENLAVNFL---EEVKSPEARCFYGFQVAIENIHAETYSLLID 119
Query: 177 GKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I +ET+PCVKKKA+WALRWI + SF ER+IAFA+VEGIFFSGSF
Sbjct: 120 TYIKDADEKHRLFNALETVPCVKKKAEWALRWI--DKGSFAERLIAFAAVEGIFFSGSFC 177
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGL+FSNELISRDE L
Sbjct: 178 SIFWLKKRGLMPGLSFSNELISRDEGL 204
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W+ KL DE++FI+HVLAFFAASDGIVNENL F +EV+ EARCFYG
Sbjct: 42 EEIDLAQDLKDWDEKLNDDERHFITHVLAFFAASDGIVNENLAVNFLEEVKSPEARCFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQ+A+EN+H+E YSLLIDTYIKD +E+
Sbjct: 102 FQVAIENIHAETYSLLIDTYIKDADEK 128
>gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis]
Length = 401
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 123/201 (61%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL +N RRFV+FPI+Y +IW+ YK+AEASFWTAEE+DLSK +
Sbjct: 76 EPLLVENKRRFVLFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWNNRMNENERFFIS 135
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E +A ++ Y F+I + Y + I
Sbjct: 136 RILAFFAASDGIVNENLVENFSAEVQAPEAKC-FYGFQIMMENIHSETYSLLIDTYIKDP 194
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+P +K+KA+WA+RWI D+ + FGER++AFA+VEG+FFSGSFA+IFWLK
Sbjct: 195 KESEFLFNAIETIPQIKEKAEWAIRWIQDDDALFGERLVAFAAVEGVFFSGSFAAIFWLK 254
Query: 236 KRGLMPGLTFSNELISRDEDL 256
K+GLMPGLTFSNELI RDE L
Sbjct: 255 KKGLMPGLTFSNELICRDEGL 275
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +E++FIS +LAFFAASDGIVNENLVE F+ EVQ EA+CFYG
Sbjct: 111 EEIDLSKDLHDWNNRMNENERFFISRILAFFAASDGIVNENLVENFSAEVQAPEAKCFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMMENIHSETYSLLIDTYIKDPKE 196
>gi|346465789|gb|AEO32739.1| hypothetical protein [Amblyomma maculatum]
Length = 395
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 133/245 (54%), Gaps = 51/245 (20%)
Query: 51 NTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDI 110
N LK+ N+ +SDS +K ++ SAPV E EPLLR+NPRRFVIFPI+Y+DI
Sbjct: 42 NKLKNKENHAPDGSISDSVKVEKKPARR-SAPV----EDEPLLRENPRRFVIFPIEYEDI 96
Query: 111 -------------------------WKMYKKAE-------ASFWTAEEVDLSKVVVTNF- 137
W+ K E +F+ A + +++ +V F
Sbjct: 97 WRMYKKAEASFWTVEEVDLAKDLPHWESLKPDERHFISHILAFFAASDGIVNENLVERFS 156
Query: 138 ------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
E R + + +E Y I Y + IETMPC+
Sbjct: 157 QEVQVTEARCFYGFQVAIENVHSEMYSLLIDT-------YIKDPAEREQLFNAIETMPCI 209
Query: 192 KKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 251
K+KADWALRWI D +SFGERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS
Sbjct: 210 KRKADWALRWIGDRNASFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 269
Query: 252 RDEDL 256
RDE L
Sbjct: 270 RDEGL 274
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L DE++FISH+LAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 111 EEVDLAKDLPHWESLKPDERHFISHILAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 170
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+ENVHSEMYSLLIDTYIKD ER
Sbjct: 171 QVAIENVHSEMYSLLIDTYIKDPAER 196
>gi|406663814|ref|ZP_11071833.1| Ribonucleoside-diphosphate reductase subunit beta [Cecembia
lonarensis LW9]
gi|405551928|gb|EKB47525.1| Ribonucleoside-diphosphate reductase subunit beta [Cecembia
lonarensis LW9]
Length = 326
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 117/201 (58%), Gaps = 34/201 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
+ EP+L+DN RFV+FPIQ+ DIW+ YKKAEASFWTAEE+DLS+
Sbjct: 3 QIEPILQDNKNRFVLFPIQHDDIWQFYKKAEASFWTAEEIDLSQDLKDWKNLNDGERHFI 62
Query: 132 -VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
V+ F E A H E Y F+I + Y + I
Sbjct: 63 SHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKNP 122
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IE + CVKKKA+WALRWI + SF ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 123 VERDKLLNAIEHIDCVKKKAEWALRWI--DNGSFQERLIAFAAVEGIFFSGSFCSIFWLK 180
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL+FSNELISRDE L
Sbjct: 181 KRGLMPGLSFSNELISRDEGL 201
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 40 EEIDLSQDLKDWKNLNDGERHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIK+ ER
Sbjct: 100 QIAMENIHSETYSLLIDTYIKNPVER 125
>gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 120/200 (60%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP RFV+FPI+ +IWKMYKKAEASFWTAEE+DL++ +
Sbjct: 16 EPLLKENPGRFVLFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLKDWESLSINERHFVSH 75
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E ++ +R Y F+I + Y + I +
Sbjct: 76 VLAFFAASDGIVNENLTGNFSTEVTSAEARC-FYGFQIAVENIHSETYSLLIDTYIKDAQ 134
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IET+PCV+KKA+WALRW +SF ER IAFA+VEGIFFSGSF +IFWLKK
Sbjct: 135 EKDHLLNAIETVPCVQKKANWALRWCDAGNASFAERCIAFAAVEGIFFSGSFCAIFWLKK 194
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGL FSNELISRDE L
Sbjct: 195 RGLMPGLCFSNELISRDEGL 214
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I EDL W L+ +E++F+SHVLAFFAASDGIVNENL F+ EV EARCFYGF
Sbjct: 51 EEIDLAEDLKDWESLSINERHFVSHVLAFFAASDGIVNENLTGNFSTEVTSAEARCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLIDTYIKD +E+
Sbjct: 111 QIAVENIHSETYSLLIDTYIKDAQEK 136
>gi|392397812|ref|YP_006434413.1| ribonucleotide reductase subunit beta [Flexibacter litoralis DSM
6794]
gi|390528890|gb|AFM04620.1| ribonucleotide reductase, beta subunit [Flexibacter litoralis DSM
6794]
Length = 331
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 118/202 (58%), Gaps = 40/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP RFV+FPI++ DIW+MYK+AEASFWTAEE+DLS
Sbjct: 12 EPLLAENPNRFVLFPIKHDDIWQMYKQAEASFWTAEEIDLSNDMRDWEAMSENERHFVKH 71
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+V N + +K + + Y F++ Y + G I G
Sbjct: 72 VLAFFAASDGIVNENLVVNFMKEVQLPEARCF---YGFQVMAENIHAETYSLLIDGYIKG 128
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K ++ + CV KK +WAL+WI E+ +F ER++AFA+VEGIFFSGSF SIFWL
Sbjct: 129 TKEKDYLFNALDNLECVAKKGNWALKWI--ESDNFAERLVAFAAVEGIFFSGSFCSIFWL 186
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 187 KKRGLMPGLTFSNELISRDEGL 208
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W ++ +E++F+ HVLAFFAASDGIVNENLV F +EVQ+ EARCFYGF
Sbjct: 47 EEIDLSNDMRDWEAMSENERHFVKHVLAFFAASDGIVNENLVVNFMKEVQLPEARCFYGF 106
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ EN+H+E YSLLID YIK +E+
Sbjct: 107 QVMAENIHAETYSLLIDGYIKGTKEK 132
>gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
Length = 323
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 122/203 (60%), Gaps = 35/203 (17%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV------------ 134
+ +EPLL +NP RFVIFPIQ+ DIW+MYK+A ASFWT EEVDLS ++
Sbjct: 1 MSSEPLLVNNPDRFVIFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWKNLKPEERRF 60
Query: 135 TNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK-------------------- 174
++ + + + + E + +++ P C Y +
Sbjct: 61 ISYILAFFAVSDGIVNENLVEKFCQEVQI-PEARCFYGFQIAIENIHSEMYSLLIDTYID 119
Query: 175 -KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K ++ TM CV+KK++WAL+WI D A +GER++AFA+VEGIFFSGSFA+IFW
Sbjct: 120 DNNEKKRLFSSMRTMDCVRKKSEWALKWINDSAP-YGERLVAFAAVEGIFFSGSFAAIFW 178
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 179 LKKRGLMPGLTFSNELISRDEGL 201
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 66/79 (83%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL W L +E+ FIS++LAFFA SDGIVNENLVE+F QEVQI EARCFYGFQIA+EN+
Sbjct: 46 DLIDWKNLKPEERRFISYILAFFAVSDGIVNENLVEKFCQEVQIPEARCFYGFQIAIENI 105
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLLIDTYI D E+
Sbjct: 106 HSEMYSLLIDTYIDDNNEK 124
>gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus]
gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus]
Length = 322
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 124/202 (61%), Gaps = 32/202 (15%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----VVVTNFEIRA 141
+E EP+L+++ R+V+FPIQY DIWKMYKKA ASFWT EEVD+SK ++T+ E
Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDWHILTSDEKYF 60
Query: 142 LK-------TGEEKASHSRNEPYLFRIKLAPGG--------------------ICRYKVK 174
+K + + + E + +++A I Y +
Sbjct: 61 IKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTYIID 120
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K K IETM C+K+KA+W +WI ++ +++ ER+IAFASVEGIFFSGSFA+IFWL
Sbjct: 121 IQEKEKLFKAIETMDCIKQKAEWVQKWIRNKDATYAERLIAFASVEGIFFSGSFAAIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRG MPGLTFSNELISRDE L
Sbjct: 181 KKRGKMPGLTFSNELISRDEGL 202
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W+ LT DEKYFI H+LAFFAASDGIVNENL ERF EVQI EARCFYGF
Sbjct: 39 EEVDISKDLKDWHILTSDEKYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTYI D +E+
Sbjct: 99 QIAIENIHSEMYSLLIDTYIIDIQEK 124
>gi|397573555|gb|EJK48757.1| hypothetical protein THAOC_32419 [Thalassiosira oceanica]
Length = 480
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 115/208 (55%), Gaps = 48/208 (23%)
Query: 90 EPLLRDNPRRFVIFPIQYQD--IWKMYKKAEASFWTAEEVDLSKVV-------------- 133
EPLL DNP RFV+FPIQ + IW+MYKKAEASFWTAEE+DL++ +
Sbjct: 159 EPLLMDNPNRFVLFPIQDNEVRIWQMYKKAEASFWTAEEIDLAEDLKDWDGLTNNERHFV 218
Query: 134 -------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGI 168
V + E R + + +E Y I
Sbjct: 219 SHILAFFAASDGIVNENLCGNFATEVQSAEARCFYGFQIAVENIHSETYSLLID------ 272
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
Y + K+ IET+PCV+KKA+WAL+W +SF ER IAFA+VEGIFFSGSF
Sbjct: 273 -TYIKDQADKMHLLNAIETVPCVQKKANWALKWCDSRHASFAERCIAFAAVEGIFFSGSF 331
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGL FSNELISRDE L
Sbjct: 332 CAIFWLKKRGLMPGLCFSNELISRDEGL 359
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I EDL W+ LT +E++F+SH+LAFFAASDGIVNENL F EVQ EARCFYGF
Sbjct: 196 EEIDLAEDLKDWDGLTNNERHFVSHILAFFAASDGIVNENLCGNFATEVQSAEARCFYGF 255
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLIDTYIKDQ ++
Sbjct: 256 QIAVENIHSETYSLLIDTYIKDQADK 281
>gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus]
gi|464615|sp|P33799.1|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 319
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 110/199 (55%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW-----------------TAEEVDLSKV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFW T +E K
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
lyrata]
gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
lyrata]
Length = 329
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 117/203 (57%), Gaps = 40/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL P RF +FPI Y IW+MYKKAEASFWTAEEVDLS+
Sbjct: 4 EPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENNLNDGERHFIK 63
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + + S +R Y F+I + Y + I
Sbjct: 64 HVLAFFAASDGIVLENLASRFM--SDVQVSEAR-AFYGFQIAIENIHSEMYSLLLDTYIK 120
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IET+PCV KKA WA++WI D + +F ER+IAFA VEGIFFSGSF SIFW
Sbjct: 121 DNKERDHLFRAIETIPCVAKKAQWAMKWI-DGSQTFAERIIAFACVEGIFFSGSFCSIFW 179
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 180 LKKRGLMPGLTFSNELISRDEGL 202
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W N L E++FI HVLAFFAASDGIV ENL RF +VQ++EAR FYG
Sbjct: 39 EEVDLSQDNRDWENNLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYG 98
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSEMYSLL+DTYIKD +ER
Sbjct: 99 FQIAIENIHSEMYSLLLDTYIKDNKER 125
>gi|885759|gb|AAA69374.1| E4L [Variola virus]
gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus]
gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus]
Length = 319
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 110/199 (55%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW-----------------TAEEVDLSKV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFW T +E K
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
strain CL Brener]
gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative
[Trypanosoma cruzi]
Length = 337
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 119/201 (59%), Gaps = 33/201 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EPLLR+NP R+VIFPI+Y DIWK YK++E+S WT EE+DLS
Sbjct: 15 QEEPLLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWEKMNEGEKFFI 74
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
K V+ F E A E Y F+I + Y V IT
Sbjct: 75 KHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYITDT 134
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ I T+PC++KKA+WA+RWI +SSF ER++AFA+VEGIFFSGSF ++FWLK
Sbjct: 135 EEKDRMLHAISTIPCIQKKANWAIRWIRS-SSSFAERLVAFAAVEGIFFSGSFCALFWLK 193
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 194 KRGLMPGLTFSNELISRDEGL 214
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL+ W K+ EK+FI HVLAFFAASDGIV ENL +RF EVQ+ E RCFYGF
Sbjct: 52 EEIDLSSDLADWEKMNEGEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVHSE YS+L+DTYI D EE+
Sbjct: 112 QIAIENVHSETYSVLLDTYITDTEEK 137
>gi|15232077|ref|NP_189342.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis
thaliana]
gi|75273949|sp|Q9LSD0.1|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C;
AltName: Full=Ribonucleoside-diphosphate reductase TSO2
subunit; AltName: Full=Ribonucleotide reductase small
subunit C
gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana]
gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis
thaliana]
gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis
thaliana]
gi|332643740|gb|AEE77261.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis
thaliana]
Length = 332
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 117/203 (57%), Gaps = 40/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL P RF +FPI Y IW+MYKKAEASFWTAEEVDLS+
Sbjct: 7 EPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIK 66
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + + S +R Y F+I + Y + I
Sbjct: 67 HVLAFFAASDGIVLENLASRFM--SDVQVSEAR-AFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IET+PCV KKA WA++WI D + +F ER+IAFA VEGIFFSGSF SIFW
Sbjct: 124 DNKERDHLFRAIETIPCVAKKAQWAMKWI-DGSQTFAERIIAFACVEGIFFSGSFCSIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGL 205
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W N L E++FI HVLAFFAASDGIV ENL RF +VQ++EAR FYG
Sbjct: 42 EEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSEMYSLL+DTYIKD +ER
Sbjct: 102 FQIAIENIHSEMYSLLLDTYIKDNKER 128
>gi|885717|gb|AAA69333.1| C8L [Variola virus]
gi|885826|gb|AAA69439.1| C8L [Variola virus]
gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus]
gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus]
gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus]
gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus]
gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus]
gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus]
Length = 319
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 110/199 (55%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW-----------------TAEEVDLSKV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFW T +E K
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>gi|436834327|ref|YP_007319543.1| Ribonucleoside-diphosphate reductase [Fibrella aestuarina BUZ 2]
gi|384065740|emb|CCG98950.1| Ribonucleoside-diphosphate reductase [Fibrella aestuarina BUZ 2]
Length = 330
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 123/204 (60%), Gaps = 42/204 (20%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK 148
EPLL ++ RFV+FPI++ DIW+MYKK EASFWTAEE+DL + + + +L GE
Sbjct: 7 VEPLLEEDKSRFVLFPIKHNDIWQMYKKHEASFWTAEEIDLGQDLK---DWNSLSDGERH 63
Query: 149 -ASHSR----------NEP----YLFRIKLAPGGICRYKVKKGGKITGGKT--------- 184
SH NE +L ++ A C Y + + +T
Sbjct: 64 FISHVLAFFAASDGIVNENLAVNFLSEVQYAEAK-CFYGFQIMMENIHSETYSLLIDTYI 122
Query: 185 ------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
I+T+PCV+KKADWALRWI++ SF ER+IAFA+VEGIFFSGSF SIF
Sbjct: 123 KDPIEKDRMLNAIDTIPCVQKKADWALRWISN--GSFAERLIAFAAVEGIFFSGSFCSIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGL 204
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL WN L+ E++FISHVLAFFAASDGIVNENL F EVQ EA+CFYGF
Sbjct: 43 EEIDLGQDLKDWNSLSDGERHFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE YSLLIDTYIKD E+
Sbjct: 103 QIMMENIHSETYSLLIDTYIKDPIEK 128
>gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata]
Length = 400
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 132/238 (55%), Gaps = 50/238 (21%)
Query: 62 QSKLSDSPIKDKSTLKQVSA---PVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAE 118
++KLS + ++ K LK ++E + EPLL D+P R +FPI+Y +IW+ YK+AE
Sbjct: 45 KAKLSTAAVEHKEYLKSHKVHRHELKELEKDEPLLNDDPDRLTLFPIKYHEIWQAYKRAE 104
Query: 119 ASFWTAEEVDLSK---------------------------------VVVTNFEIRALKTG 145
ASFWTAEE+DLSK +V NF A+
Sbjct: 105 ASFWTAEEIDLSKDLHDWNNRLNENERFFISRVLAFFAASDGIVNENLVENFSTEAV-IP 163
Query: 146 EEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWA 198
E KA Y F+I + Y + I K I T+P + +KA+WA
Sbjct: 164 EAKAF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWA 217
Query: 199 LRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
LRWIA+ + F ER++AFA++EG+FFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 218 LRWIANSEALFAERLVAFAAIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 275
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L +E++FIS VLAFFAASDGIVNENLVE F+ E I EA+ FYG
Sbjct: 111 EEIDLSKDLHDWNNRLNENERFFISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus
Protochlamydia amoebophila UWE25]
gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain
[Candidatus Protochlamydia amoebophila UWE25]
Length = 323
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/201 (47%), Positives = 119/201 (59%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
TEP+LR+N RFV+FPI + +IW+MYKKAEASFWTAEE+DL+
Sbjct: 4 TEPILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDWDRKLNNDEKYFI 63
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
K ++ F E A + +E Y F+I + Y + I
Sbjct: 64 KHILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKDP 123
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K +ET+PC+ KADWALRWI+ SF ER++AFA+VEGIFFSGSF SIFWLK
Sbjct: 124 TDKNRLFKALETIPCISNKADWALRWISQ--GSFSERLVAFAAVEGIFFSGSFCSIFWLK 181
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL+F+NELISRDE L
Sbjct: 182 KRGLMPGLSFANELISRDEGL 202
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I DL W+ KL DEKYFI H+LAFFAASDGIVNENL F EVQ EARCFYG
Sbjct: 40 EEIDLTSDLLDWDRKLNNDEKYFIKHILAFFAASDGIVNENLAVNFMSEVQYPEARCFYG 99
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD ++
Sbjct: 100 FQIMMENIHSEAYSLLIDTYIKDPTDK 126
>gi|410027779|ref|ZP_11277615.1| ribonucleotide reductase subunit beta [Marinilabilia sp. AK2]
Length = 326
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 117/201 (58%), Gaps = 34/201 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
+ EP+L++N RFV+FPIQ+ DIW+ YKKAEASFWTAEE+DLS+
Sbjct: 3 QIEPILQENKNRFVLFPIQHDDIWQFYKKAEASFWTAEEIDLSQDLKDWKDLNDGERHFI 62
Query: 132 -VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
V+ F E A H E Y F+I + Y + I
Sbjct: 63 SHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKNP 122
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
IE + CVKKKA+WALRWI E +F ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 123 VERDKLLNAIEHIDCVKKKAEWALRWI--ENGNFQERLIAFAAVEGIFFSGSFCSIFWLK 180
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 181 KRGLMPGLTFSNELISRDEGL 201
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 40 EEIDLSQDLKDWKDLNDGERHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIK+ ER
Sbjct: 100 QIAMENIHSETYSLLIDTYIKNPVER 125
>gi|440751431|ref|ZP_20930664.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Mariniradius saccharolyticus AK6]
gi|436480073|gb|ELP36338.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Mariniradius saccharolyticus AK6]
Length = 326
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 116/200 (58%), Gaps = 34/200 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EP+L++N RFV+FPIQ+ DIWK YKKAEASFWTAEE+DLS+
Sbjct: 4 VEPILQENKDRFVLFPIQHDDIWKFYKKAEASFWTAEEIDLSQDLRDWKNLNDGERHFIS 63
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG- 182
V+ F E A H E Y F+I + Y + I
Sbjct: 64 HVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKDAV 123
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IE + C+KKKA+WALRWI + +F ER+IAFA+VEGIFFSGSF SIFWLKK
Sbjct: 124 ERDRLLHAIEHIDCIKKKAEWALRWI--DNGNFQERLIAFAAVEGIFFSGSFCSIFWLKK 181
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 182 RGLMPGLTFSNELISRDEGL 201
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 40 EEIDLSQDLRDWKNLNDGERHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIKD ER
Sbjct: 100 QIAMENIHSETYSLLIDTYIKDAVER 125
>gi|388857936|emb|CCF48381.1| probable small subunit of ribonucleotide reductase [Ustilago
hordei]
Length = 421
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 119/193 (61%), Gaps = 35/193 (18%)
Query: 98 RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------------------ 133
RRFV+FPI++ +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 99 RRFVLFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDWDNKLNDNERHFISHVLAFFAA 158
Query: 134 ---VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK------- 183
+ N + + E +A+ +R Y F+I + Y + I +
Sbjct: 159 SDGIVNENLVERFSSEVQAAEARC-FYGFQIMMENIHSETYSLLIDTYIREPEQREFLFD 217
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+P VKKKA+WALRWI D ++F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 218 AVETIPVVKKKAEWALRWINDRKATFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 277
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 278 TFSNELISRDEGL 290
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 126 EEIDLSKDLHDWDNKLNDNERHFISHVLAFFAASDGIVNENLVERFSSEVQAAEARCFYG 185
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI++ E+R
Sbjct: 186 FQIMMENIHSETYSLLIDTYIREPEQR 212
>gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83]
gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83]
Length = 321
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 119/200 (59%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL ++ RFVIFPI Y DIW MYKKA ASFWT EEVDLSK +
Sbjct: 2 EPLLVESNNRFVIFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWKKLTDNERYFIKN 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
+ N + E + S +R Y F+I + Y + IT
Sbjct: 62 ILAFFAASDGIVNENLAQRFYSEVQCSEARC-FYGFQIAIENIHSEMYSLLIDTYITDVD 120
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K I+T+ C+K+KA WA +WI D+ S++GER++AFA+VEGIFFSG+FASIFWLKK
Sbjct: 121 EKNHLLKAIDTIDCIKEKAKWAEKWILDKESTYGERLVAFAAVEGIFFSGAFASIFWLKK 180
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 181 RGLMPGLTFSNELISRDEGL 200
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 72/88 (81%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL W KLT +E+YFI ++LAFFAASDGIVNENL +RF EVQ +EARCFY
Sbjct: 35 TTEEVDLSKDLLDWKKLTDNERYFIKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFY 94
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLLIDTYI D +E+
Sbjct: 95 GFQIAIENIHSEMYSLLIDTYITDVDEK 122
>gi|384489720|gb|EIE80942.1| ribonucleoside-diphosphate reductase small chain [Rhizopus delemar
RA 99-880]
Length = 344
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 129/215 (60%), Gaps = 36/215 (16%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---- 131
L+ +S + + E E +LR+N RRF +FPI+Y +IW+ YKKAEASFWTAEE+DLS+
Sbjct: 10 LQDLSLKNKVDDEQEEILRENTRRFCLFPIKYHEIWQFYKKAEASFWTAEEIDLSRDQND 69
Query: 132 ---VVVTN---FEIRALK---TGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N F R L + + + + + + +K+ P C Y + +
Sbjct: 70 WENKMTENERFFISRVLAFFASSDGIVNENLVQNFCDEVKI-PEAKCFYGFQIMIENIHS 128
Query: 183 KT---------------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEG 221
+T I+T+PC+K+KADWA +WI+ SF ER++AFA+VEG
Sbjct: 129 ETYSLLIDTYIKDDEEKEMLFSAIDTIPCIKRKADWAFKWIS-ANDSFAERLVAFAAVEG 187
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
IFFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 188 IFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 222
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 72/85 (84%), Gaps = 3/85 (3%)
Query: 250 ISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
+SRD++ W NK+T +E++FIS VLAFFA+SDGIVNENLV+ F EV+I EA+CFYGFQ
Sbjct: 63 LSRDQN--DWENKMTENERFFISRVLAFFASSDGIVNENLVQNFCDEVKIPEAKCFYGFQ 120
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
I +EN+HSE YSLLIDTYIKD EE+
Sbjct: 121 IMIENIHSETYSLLIDTYIKDDEEK 145
>gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus]
gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus]
Length = 325
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 119/204 (58%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
+V +EP+LR R+V+FPI Y+DIW MYKKA ASFWT EEVDLSK
Sbjct: 2 DVVSEPILRQTTGRYVVFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDWLKLSENEKK 61
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + E + S +R Y F+I + Y + I
Sbjct: 62 FIKHILAFFAASDGIVNENLAERFYSEVQVSEARC-FYGFQIAMENIHSEMYSLLIDTYI 120
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IE M CVK+KA+WA +WI + S++GER+IAFA+VEGIFFSGSFA+IF
Sbjct: 121 LDSKEKNYLFNAIENMNCVKQKANWARKWIESKNSTYGERLIAFAAVEGIFFSGSFAAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W+KKRGLMPGLTFSNELISRDE L
Sbjct: 181 WIKKRGLMPGLTFSNELISRDEGL 204
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D W KL+ +EK FI H+LAFFAASDGIVNENL ERF EVQ++EARCFYGF
Sbjct: 41 EEVDLSKDFPDWLKLSENEKKFIKHILAFFAASDGIVNENLAERFYSEVQVSEARCFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYI D +E+
Sbjct: 101 QIAMENIHSEMYSLLIDTYILDSKEK 126
>gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex]
Length = 378
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 131/246 (53%), Gaps = 55/246 (22%)
Query: 50 QNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQD 109
Q LK N+ +KL T + S V++N + EPLLR NP RFV+FPIQY D
Sbjct: 26 QKILKPHDENVSPTKL---------TTVEKSVQVRDNDQNEPLLRSNPSRFVLFPIQYHD 76
Query: 110 IWKMYKKAEAS--------------------------------FWTAEEVDLSKVVVTNF 137
IW+MYKKAEAS F+ A + +++ +V F
Sbjct: 77 IWQMYKKAEASFWTAEEVDLSKDLKDWDNLQPNERHFVSHVLAFFAASDGIVNENLVERF 136
Query: 138 -------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPC 190
E R + + +E Y I+ Y + +ETMPC
Sbjct: 137 AQEVQVPEARCFYGFQIAMENIHSEMYSLLIET-------YIKDSAERTRLFNAVETMPC 189
Query: 191 VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 250
+ KKA+WA++WI ++ + + ER++AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELI
Sbjct: 190 IAKKAEWAMKWIGNKDAPYSERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELI 249
Query: 251 SRDEDL 256
SRDE L
Sbjct: 250 SRDEGL 255
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W+ L +E++F+SHVLAFFAASDGIVNENLVERF QEVQ+ EARCFYGF
Sbjct: 92 EEVDLSKDLKDWDNLQPNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGF 151
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLI+TYIKD ER
Sbjct: 152 QIAMENIHSEMYSLLIETYIKDSAER 177
>gi|378754645|gb|EHY64675.1| ribonucleoside-diphosphate reductase, beta subunit [Nematocida sp.
1 ERTm2]
Length = 334
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 119/200 (59%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EP+L ++ RFVIFPI++ DIW +YK A A FWTAEEVDLSK
Sbjct: 18 EPILTESNNRFVIFPIEHHDIWALYKDAVAVFWTAEEVDLSKDQADWDNLNNNERHFISY 77
Query: 132 VV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
V+ + N + E + S +R Y F+I + Y + I
Sbjct: 78 VLAFFAASDGIVNENLVERFASEVQISEARC-FYGFQIMIENIHAEMYSLLIDTYIKDTA 136
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
+ IE +P +KKKADWALRWI+D+ +SF +R++AFA VEGIFFSGSFASIFWLKK
Sbjct: 137 EKNFLFQAIENIPVIKKKADWALRWISDKEASFADRLVAFACVEGIFFSGSFASIFWLKK 196
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 197 RGLMPGLTFSNELISRDEGL 216
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D + W+ L +E++FIS+VLAFFAASDGIVNENLVERF EVQI+EARCFYGF
Sbjct: 53 EEVDLSKDQADWDNLNNNERHFISYVLAFFAASDGIVNENLVERFASEVQISEARCFYGF 112
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +EN+H+EMYSLLIDTYIKD E+
Sbjct: 113 QIMIENIHAEMYSLLIDTYIKDTAEK 138
>gi|387789964|ref|YP_006255029.1| ribonucleotide reductase subunit beta [Solitalea canadensis DSM
3403]
gi|379652797|gb|AFD05853.1| ribonucleotide reductase, beta subunit [Solitalea canadensis DSM
3403]
Length = 323
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 119/197 (60%), Gaps = 34/197 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EPLL++N RFV+ PI+Y +IW+MYKKAEASFWTAEE+DLS
Sbjct: 6 EPLLQENKERFVLLPIKYPEIWEMYKKAEASFWTAEEIDLSLDLKDWENFNDGERHFISH 65
Query: 133 VVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYK--VKKGGKITGG 182
V+ F E A + +E Y F+I + Y + K T
Sbjct: 66 VLAFFAASDGIVNENLAVNFMSEVQIPEARCYYGFQIMMENIHSETYALLIDTYVKDTAE 125
Query: 183 K-----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IET+PCVK+KA+WALRWI E +F ER++AFA+VEGIFFSGSF SIFWLKKR
Sbjct: 126 KNRLFNAIETVPCVKQKAEWALRWI--ENGTFAERLVAFAAVEGIFFSGSFCSIFWLKKR 183
Query: 238 GLMPGLTFSNELISRDE 254
GLMPGLTFSNELISRDE
Sbjct: 184 GLMPGLTFSNELISRDE 200
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 63/86 (73%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL W E++FISHVLAFFAASDGIVNENL F EVQI EARC+YGF
Sbjct: 41 EEIDLSLDLKDWENFNDGERHFISHVLAFFAASDGIVNENLAVNFMSEVQIPEARCYYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE Y+LLIDTY+KD E+
Sbjct: 101 QIMMENIHSETYALLIDTYVKDTAEK 126
>gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299]
gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299]
Length = 335
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 118/203 (58%), Gaps = 39/203 (19%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EPLL N RF +FPI+Y DIW+MYKKAEASFWTAEEVDLS
Sbjct: 14 AEPLLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHWNKLNNDEKHFIK 73
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N +R + GE + +R Y F+I + Y + +
Sbjct: 74 HILAFFAASDGIVLENLGVRFM--GEVQFPEAR-AFYGFQIAIENIHSEMYSLLIDAYVK 130
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ I+ +PC+ KKADWA +WI + ++ F ER+IAFA +EGIFFSGSF SI+W
Sbjct: 131 DAQEKTYLFQAIQNIPCIAKKADWAFKWI-ESSADFAERLIAFACIEGIFFSGSFCSIYW 189
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 190 LKKRGLMPGLTFSNELISRDEGL 212
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HWNKL DEK+FI H+LAFFAASDGIV ENL RF EVQ EAR FYGF
Sbjct: 50 EEVDLSDDMVHWNKLNNDEKHFIKHILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGF 109
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLID Y+KD +E+
Sbjct: 110 QIAIENIHSEMYSLLIDAYVKDAQEK 135
>gi|410910828|ref|XP_003968892.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Takifugu rubripes]
Length = 360
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 126/228 (55%), Gaps = 48/228 (21%)
Query: 70 IKDKSTLKQVSAPVQENVET--EPLLRDNPRRFVIFPIQYQDIWKMYKKAEA-------- 119
+++ + LK S + ET EPLL +NPRRFVIFPIQY DIWKMYK+A+A
Sbjct: 19 MRESNGLKDTSPGWESGSETQGEPLLEENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEV 78
Query: 120 ------------------------SFWTAEEVDLSKVVVTNF-------EIRALKTGEEK 148
+F+ A + +++ +V F E R+ + +
Sbjct: 79 DLSKDLAHWDSLKHEEKHFVSHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSCQVL 138
Query: 149 ASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASS 208
+E Y I Y + I TMPCVK+KADWAL WI D S+
Sbjct: 139 MESVHSEMYSLLIN-------TYIRDLKERDYLFNAIHTMPCVKRKADWALHWINDRTST 191
Query: 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FGER++AFA+VEGIFFSGSFASI+WLKKRGLMPGLT+SNELISRDE L
Sbjct: 192 FGERLVAFAAVEGIFFSGSFASIYWLKKRGLMPGLTYSNELISRDEGL 239
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+HW+ L +EK+F+SHVLAFFAASDGIVNENLV+RF QEVQ+ EAR FY
Sbjct: 76 EEVDLSKDLAHWDSLKHEEKHFVSHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSC 135
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ ME+VHSEMYSLLI+TYI+D +ER
Sbjct: 136 QVLMESVHSEMYSLLINTYIRDLKER 161
>gi|384496849|gb|EIE87340.1| ribonucleoside-diphosphate reductase small chain [Rhizopus delemar
RA 99-880]
Length = 344
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 48/221 (21%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL------ 129
L+++S + E E +LR+N RRF +FPI+Y +IW+ YKKAEASFWTAEE+DL
Sbjct: 10 LQELSLKKNVDDEQEEILRENTRRFCLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDQHD 69
Query: 130 -------------SKVV--------------VTNFEIRALKTGEEKASHSRNEPYLFRIK 162
S+V+ V NF +K E K Y F+I
Sbjct: 70 WENKMSENERFFISRVLAFFAGSDGIVNENLVQNF-CDEVKIPEAKCF------YGFQIM 122
Query: 163 LAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIA 215
+ Y + I + I+T+PC+K+KADWA +WI+ SF ER++A
Sbjct: 123 IENIHAETYSLLIDTYIKDNQEKEMLFSAIDTIPCIKRKADWAFKWISSN-ESFAERLVA 181
Query: 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 182 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 222
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D W NK++ +E++FIS VLAFFA SDGIVNENLV+ F EV+I EA+CFYG
Sbjct: 59 EEIDLSKDQHDWENKMSENERFFISRVLAFFAGSDGIVNENLVQNFCDEVKIPEAKCFYG 118
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+H+E YSLLIDTYIKD +E+
Sbjct: 119 FQIMIENIHAETYSLLIDTYIKDNQEK 145
>gi|1710401|sp|P49730.1|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleoside-diphosphate reductase R2
subunit; AltName: Full=Ribonucleotide reductase small
subunit
gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum]
Length = 329
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 119/205 (58%), Gaps = 39/205 (19%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
+ EPLL +P RF +FPIQY IW+MYKKA ASFWTAEEVDLS
Sbjct: 4 IPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGERHF 63
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V+ N R +K E + + +R Y F+I + Y +
Sbjct: 64 ITHVLAFFAASDGIVLENLAGRFMK--EVQVAEARA-FYGFQIAIENIHSEMYSLLLESY 120
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I + +ET PCV+KKA WALRWI D + +F ER++AFA VEGIFFSGSF +I
Sbjct: 121 IKDSDEKSRLFRAVETNPCVEKKAKWALRWI-DGSETFAERLVAFACVEGIFFSGSFCAI 179
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FWLKKRGLMPGLTFSNELISRDEGL 204
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + D HW LT E++FI+HVLAFFAASDGIV ENL RF +EVQ+ EAR FY
Sbjct: 40 TAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFY 99
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLL+++YIKD +E+
Sbjct: 100 GFQIAIENIHSEMYSLLLESYIKDSDEK 127
>gi|426198205|gb|EKV48131.1| hypothetical protein AGABI2DRAFT_116955 [Agaricus bisporus var.
bisporus H97]
Length = 365
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 124/204 (60%), Gaps = 37/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE 147
E EPLL+++ RRFV+FPIQY +IW+ YKKA+ASFWT EE+DLS + T++ R K
Sbjct: 36 EQEPLLKESQRRFVLFPIQYPEIWRYYKKAQASFWTVEEIDLSHDI-TDWAYRLNKDERR 94
Query: 148 KASHSR----------NEPYLFR----IKLAPGGICRYKVKKGGKITGGKT--------- 184
SH NE + R +++A C Y + + +T
Sbjct: 95 FISHILAFFAASDGIVNENLVERFSNEVQVAEAR-CFYGFQIMMENIHSETYSLLIDTYI 153
Query: 185 ------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ET+P +K+KA WALRWI+ SF ER++AFA+VEG+FFSGSFA+IF
Sbjct: 154 KDPDERKHLFDAVETIPTIKRKAVWALRWISSRGLSFAERLVAFAAVEGVFFSGSFAAIF 213
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W+KKRGLMPGLTFSNELI+RDE +
Sbjct: 214 WIKKRGLMPGLTFSNELITRDEGM 237
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I D++ W +L +DE+ FISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 73 EEIDLSHDITDWAYRLNKDERRFISHILAFFAASDGIVNENLVERFSNEVQVAEARCFYG 132
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD +ER
Sbjct: 133 FQIMMENIHSETYSLLIDTYIKDPDER 159
>gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus
cuniculus]
Length = 400
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 125/222 (56%), Gaps = 34/222 (15%)
Query: 68 SPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
+P + ++Q S + + E R+NP RF I I+ IW KK EASFWTAEEV
Sbjct: 59 APGTQMAAVRQKSPALASGMGDESGRRENPCRFSILTIESYGIWTRNKKGEASFWTAEEV 118
Query: 128 DLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEPYLFRI 161
DLSK + + N + + E + + +R Y F+I
Sbjct: 119 DLSKDIQHWEALKEEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQI 177
Query: 162 KLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVI 214
+ Y + I K IETMPCVKKKADWALRWI D+ +++GERV+
Sbjct: 178 AMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 237
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 238 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 279
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 114 TAEEVDLSKDIQHWEALKEEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 173
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 174 GFQIAMENIHSEMYSLLIDTYIKDPKER 201
>gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895]
gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895]
gi|374105604|gb|AEY94515.1| FAAL136Cp [Ashbya gossypii FDAG1]
Length = 422
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 125/214 (58%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD-------------- 128
++E + EPLL +N RRFV+FPI+Y DIW+ YK+AEASFWTAEE+D
Sbjct: 90 LKEQEKNEPLLMENKRRFVLFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMTE 149
Query: 129 -----LSKVV--------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
+S+V+ V NF ++ E K Y F+I +
Sbjct: 150 NERFFISRVLAFFAASDGIVNENLVENFSAE-VQIPEAKCF------YGFQIMMENIHSE 202
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K IET+P +K+KA+WA+RWI D+ + F ER++AFA+VEGI
Sbjct: 203 TYSLLIDTYIKDPKEADHLFNAIETIPEIKEKAEWAIRWIQDKDALFAERLVAFAAVEGI 262
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFA+IFWLKK+GLMPGLTFSNELI RDE L
Sbjct: 263 FFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGL 296
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++T +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+CFYG
Sbjct: 132 EEIDLSKDIHDWNNRMTENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYG 191
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 192 FQIMMENIHSETYSLLIDTYIKDPKE 217
>gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
Length = 379
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 116/202 (57%), Gaps = 32/202 (15%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS---------------- 130
+ EP L +NP RFV+FPIQ ++W+MYKKAEASFWTAEE+DL
Sbjct: 57 IPIEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDWSKLTDNERHF 116
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITG 181
K V+ F E A + NE Y F+I + Y + I
Sbjct: 117 IKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKD 176
Query: 182 G-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ IET+PCV KKA WA++W SS+ ER++AFA+VEGIFFSGSF SIFWL
Sbjct: 177 AIEKDHLLRAIETIPCVTKKAHWAIKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWL 236
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGL+FSNELISRDE +
Sbjct: 237 KKRGLMPGLSFSNELISRDEGM 258
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL W+KLT +E++FI HVLAFFAASDGIVNENL F+ EVQ+ EARCFYGFQIA+EN+
Sbjct: 102 DLKDWSKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENI 161
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE+YSLLIDTYIKD E+
Sbjct: 162 HSEVYSLLIDTYIKDAIEK 180
>gi|409080029|gb|EKM80390.1| hypothetical protein AGABI1DRAFT_39266 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 396
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 124/204 (60%), Gaps = 37/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE 147
E EPLL+++ RRFV+FP+QY +IW+ YKKA+ASFWT EE+DLS + T++ R K
Sbjct: 36 EQEPLLKESQRRFVLFPVQYPEIWRYYKKAQASFWTVEEIDLSHDI-TDWAYRLNKDERR 94
Query: 148 KASHSR----------NEPYLFR----IKLAPGGICRYKVKKGGKITGGKT--------- 184
SH NE + R +++A C Y + + +T
Sbjct: 95 FISHILAFFAASDGIVNENLVERFSNEVQVAEAR-CFYGFQIMMENIHSETYSLLIDTYI 153
Query: 185 ------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ET+P +K+KA WALRWI+ SF ER++AFA+VEG+FFSGSFA+IF
Sbjct: 154 KDPDERKHLFDAVETIPTIKRKAVWALRWISSRGLSFAERLVAFAAVEGVFFSGSFAAIF 213
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W+KKRGLMPGLTFSNELI+RDE +
Sbjct: 214 WIKKRGLMPGLTFSNELITRDEGM 237
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I D++ W +L +DE+ FISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 73 EEIDLSHDITDWAYRLNKDERRFISHILAFFAASDGIVNENLVERFSNEVQVAEARCFYG 132
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIKD +ER
Sbjct: 133 FQIMMENIHSETYSLLIDTYIKDPDER 159
>gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
sp. PR1]
gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
sp. PR1]
Length = 326
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 120/205 (58%), Gaps = 40/205 (19%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE 146
++ EP+L +N RFV+FPIQ+ DIW+ YKKAEASFWTAEE+DL + +V + ++L GE
Sbjct: 1 MQQEPILSENKNRFVLFPIQHADIWEYYKKAEASFWTAEEIDLGQDMV---DWKSLNDGE 57
Query: 147 EK--------------------ASHSRNEP--------YLFRIKLAPGGICRYKVKKGGK 178
A H E Y F+I + Y +
Sbjct: 58 RHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTY 117
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I IE + CVKKKADWALRWI + +F ER+IAFA+VEGIFFSGSF SI
Sbjct: 118 IKDPSERDKLFNAIEHIDCVKKKADWALRWI--DNGNFQERLIAFAAVEGIFFSGSFCSI 175
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 176 FWLKKRGLMPGLTFSNELISRDEGL 200
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D+ W L E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 39 EEIDLGQDMVDWKSLNDGERHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIKD ER
Sbjct: 99 QIAMENIHSETYSLLIDTYIKDPSER 124
>gi|374596274|ref|ZP_09669278.1| ribonucleotide reductase [Gillisia limnaea DSM 15749]
gi|373870913|gb|EHQ02911.1| ribonucleotide reductase [Gillisia limnaea DSM 15749]
Length = 325
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 117/200 (58%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFVIFPI++ DIW YKK EASFWTAEE+DL
Sbjct: 3 QLEPILQENKDRFVIFPIKHHDIWDWYKKMEASFWTAEEIDLHQDANDWNNKLNADERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + NE Y F+I + I Y
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K + IET P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWL
Sbjct: 123 EKEKDQLFRAIETFPAIKKKADWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 181 KKRGLMPGLTFSNELISRDE 200
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +D + WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDANDWNNKLNADERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 85 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEKEK 126
>gi|341889599|gb|EGT45534.1| hypothetical protein CAEBREN_21681 [Caenorhabditis brenneri]
Length = 375
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 143/265 (53%), Gaps = 47/265 (17%)
Query: 49 PQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQ 108
P+++ K L + +KLS I +K +++ V EPLL+D RFVIFP++Y
Sbjct: 18 PKHSSKKLKLEEELNKLS---IVEKPKVEETKEEVNALDANEPLLQDLDNRFVIFPLRYH 74
Query: 109 DIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRAL 142
+IW+ YKKA ASFWT EEVDL K + + N +
Sbjct: 75 EIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRVLAFFAASDGIVNENLCER 134
Query: 143 KTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKGGKITGGKTIETMPCVKKKA 195
+ E K S +R Y F+I ++ I Y + + I +KKKA
Sbjct: 135 FSNEVKVSEARF-FYGFQIAIENIHSEMYSKLIETYIRDEQERHKLFNAIFEFEFIKKKA 193
Query: 196 DWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDED 255
DWAL+WI+D+ +SF ER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGLT SNELISRDE
Sbjct: 194 DWALKWISDQKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEG 253
Query: 256 LSH----------WNKLTRDEKYFI 270
L NKLT++ Y I
Sbjct: 254 LHRDFACLLYSMLQNKLTQERIYEI 278
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W K+ DE+YFIS VLAFFAASDGIVNENL ERF+ EV+++EAR FYGF
Sbjct: 91 EEVDLGKDMNDWEKMNGDEQYFISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGF 150
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYS LI+TYI+D++ER
Sbjct: 151 QIAIENIHSEMYSKLIETYIRDEQER 176
>gi|386819559|ref|ZP_10106775.1| ribonucleotide reductase, beta subunit [Joostella marina DSM 19592]
gi|386424665|gb|EIJ38495.1| ribonucleotide reductase, beta subunit [Joostella marina DSM 19592]
Length = 326
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 119/202 (58%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L++N RFVIFPIQ+ DIW+ YKK EA FWTAEE+DL K
Sbjct: 6 EPILQENKDRFVIFPIQHHDIWEWYKKQEACFWTAEEIDLHQDLTDWNNKLNDDERYFIK 65
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKV---------K 174
++ F E A + NE Y F+I + Y + K
Sbjct: 66 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKNEK 125
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ G++ K IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWL
Sbjct: 126 EKGQLF--KAIENFPAIKKKADWALKWI--ESPSFAERLIAFAAVEGIFFSGAFCSIFWL 181
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE +
Sbjct: 182 KKRGLMPGLTFSNELISRDEGM 203
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I +DL+ WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 29 WYKKQ---EACFWTAEEIDLHQDLTDWNNKLNDDERYFIKHILAFFAASDGIVNENLAEN 85
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+K+++E+
Sbjct: 86 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKNEKEK 127
>gi|390349734|ref|XP_798682.3| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase subunit M2-like [Strongylocentrotus
purpuratus]
Length = 516
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 118/199 (59%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-------------KVVVTN 136
EPLL N +RFV+FPI+Y D+WK YK+A ASFWT EEVDL K VT+
Sbjct: 196 EPLLTPNAQRFVLFPIKYPDVWKFYKRAMASFWTTEEVDLGEDWKDWQKLKPEEKHFVTH 255
Query: 137 -FEIRALKTG------EEKASHSRNEP-----YLFRI-------KLAPGGICRYKVKKGG 177
A G E+ S P Y F+I ++ I Y
Sbjct: 256 VLAFFAASDGIVNENLVERFSQEVQIPEAKCFYGFQIAMENIHSEMYSLLIDTYVKDPTE 315
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K I+TMP VKKKADWAL+WIA + S+F ER++AFA+VEGIFFSGSFA+IFW KKR
Sbjct: 316 KHRLFNAIQTMPFVKKKADWALKWIASDESTFAERLVAFAAVEGIFFSGSFAAIFWFKKR 375
Query: 238 GLMPGLTFSNELISRDEDL 256
GL+PGLTFSNELISRDE L
Sbjct: 376 GLLPGLTFSNELISRDEGL 394
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F + ++ KR + T E + ED W KL +EK+F++HVLAFFAASD
Sbjct: 207 VLFPIKYPDVWKFYKRAMASFWT--TEEVDLGEDWKDWQKLKPEEKHFVTHVLAFFAASD 264
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENLVERF+QEVQI EA+CFYGFQIAMEN+HSEMYSLLIDTY+KD E+
Sbjct: 265 GIVNENLVERFSQEVQIPEAKCFYGFQIAMENIHSEMYSLLIDTYVKDPTEK 316
>gi|423315654|ref|ZP_17293559.1| ribonucleoside-diphosphate reductase subunit M2 [Bergeyella
zoohelcum ATCC 43767]
gi|405585758|gb|EKB59561.1| ribonucleoside-diphosphate reductase subunit M2 [Bergeyella
zoohelcum ATCC 43767]
Length = 329
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 118/205 (57%), Gaps = 37/205 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD----------------- 128
N TEPLL +N RFVIFPIQ+ DIW+ YK AEASFWTAEEVD
Sbjct: 5 NHMTEPLLIENKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQNKLNDNER 64
Query: 129 --LSKVV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+S+V+ + N E A+ +E Y F+I + Y +
Sbjct: 65 FFISRVLAFFAASDGIVN-ENLAINFLQEVQYPEARCFYGFQIMIENIHSEMYSLLIDTY 123
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
+ + IET+PCV KKA WALRWI SF ER+IAFA+VEGIFFSGSF SI
Sbjct: 124 VKDPIEKDYLLRAIETIPCVTKKAKWALRWIT--KGSFAERLIAFAAVEGIFFSGSFCSI 181
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 182 FWLKKRGLMPGLTFSNELISRDEGL 206
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 255 DLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL W NKL +E++FIS VLAFFAASDGIVNENL F QEVQ EARCFYGFQI +EN
Sbjct: 51 DLHDWQNKLNDNERFFISRVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIEN 110
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSEMYSLLIDTY+KD E+
Sbjct: 111 IHSEMYSLLIDTYVKDPIEK 130
>gi|298207002|ref|YP_003715181.1| ribonucleoside-diphosphate reductase small chain [Croceibacter
atlanticus HTCC2559]
gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain
[Croceibacter atlanticus HTCC2559]
Length = 325
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 116/202 (57%), Gaps = 35/202 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L+ N RFVIFPIQ+ DIW+ YKK EA FWTAEE+DL
Sbjct: 3 QVEPILQKNENRFVIFPIQHNDIWEWYKKMEACFWTAEEIDLHQDLTDWNSKLNDDERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + NE Y F+I + I Y
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K + IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWL
Sbjct: 123 EAEKDQLFRAIEVFPAIKKKADWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE +
Sbjct: 181 KKRGLMPGLTFSNELISRDEGM 202
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DL+ WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEACFWTAEEIDLHQDLTDWNSKLNDDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 85 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEK 126
>gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus
6918VP60-T2]
Length = 322
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 122/202 (60%), Gaps = 32/202 (15%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----VVVTNFEIRA 141
+E EP+L+++ R+V+FPIQY DIW MYKKA ASFWT EEVD+SK V+T E
Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRVLTPDEKYF 60
Query: 142 LK-------TGEEKASHSRNEPYLFRIKLAPGG--------------------ICRYKVK 174
+K + + + E + +++A I Y +
Sbjct: 61 IKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTYIIN 120
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K K IETM C+K+KA+W +WI ++ +++ ER+IAFASVEGIFFSGSFA+IFWL
Sbjct: 121 LQEKEKLFKAIETMDCIKQKAEWVQKWIRNKDATYAERLIAFASVEGIFFSGSFAAIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRG MPGLTFSNELISRDE L
Sbjct: 181 KKRGKMPGLTFSNELISRDEGL 202
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W LT DEKYFI H+LAFFAASDGIVNENL ERF EVQI EARCFYGF
Sbjct: 39 EEVDISKDLKDWRVLTPDEKYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYI + +E+
Sbjct: 99 QIAMENIHSEMYSLLIDTYIINLQEK 124
>gi|373954256|ref|ZP_09614216.1| ribonucleotide reductase [Mucilaginibacter paludis DSM 18603]
gi|373890856|gb|EHQ26753.1| ribonucleotide reductase [Mucilaginibacter paludis DSM 18603]
Length = 343
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 125/216 (57%), Gaps = 42/216 (19%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTN 136
K+V+ + + E E LLR+N RFVI PI Y IW+MYKK EASFWTAEE+DLS +
Sbjct: 12 KKVNTVTRMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEIDLSDDMK-- 69
Query: 137 FEIRALKTGEEK-ASHSR----------NEP----YLFRIKLAPGGICRYKVKKGGKITG 181
+ L GE SH NE ++ ++L P C Y + +
Sbjct: 70 -DWNNLNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQL-PEARCFYGFQIMMENIH 127
Query: 182 GKT---------------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVE 220
+T IET+PCVKKK +WAL+WI E +F ER++AFA+VE
Sbjct: 128 SETYALLIDTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWI--ENGTFAERLVAFAAVE 185
Query: 221 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GIFFSGSF SIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 186 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGM 221
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D+ WN L E++FISH+LAFFAASDGIVNENL F EVQ+ EARCFYGF
Sbjct: 60 EEIDLSDDMKDWNNLNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE Y+LLIDTYIKD E+
Sbjct: 120 QIMMENIHSETYALLIDTYIKDTTEK 145
>gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus]
gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus]
gi|301134541|gb|ADK63655.1| M015L [Myxoma virus]
gi|408685181|gb|AFU77616.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408685351|gb|AFU77785.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408685685|gb|AFU78117.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408685854|gb|AFU78285.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408686189|gb|AFU78618.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408686524|gb|AFU78951.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408687028|gb|AFU79452.1| small subunit ribonucleotide reductase [Myxoma virus]
Length = 322
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 122/202 (60%), Gaps = 32/202 (15%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----VVVTNFEIRA 141
+E EP+L+++ R+V+FPIQY DIW MYKKA ASFWT EEVD+SK V+T E
Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRVLTPDEKYF 60
Query: 142 LK-------TGEEKASHSRNEPYLFRIKLAPGG--------------------ICRYKVK 174
+K + + + E + +++A I Y +
Sbjct: 61 IKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTYIID 120
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K K IETM C+K+KA+W +WI ++ +++ ER+IAFASVEGIFFSGSFA+IFWL
Sbjct: 121 LQEKEKLFKAIETMDCIKQKAEWVQKWIRNKDATYAERLIAFASVEGIFFSGSFAAIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRG MPGLTFSNELISRDE L
Sbjct: 181 KKRGKMPGLTFSNELISRDEGL 202
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W LT DEKYFI H+LAFFAASDGIVNENL ERF EVQI EARCFYGF
Sbjct: 39 EEVDISKDLKDWRVLTPDEKYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYI D +E+
Sbjct: 99 QIAMENIHSEMYSLLIDTYIIDLQEK 124
>gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
virus NI-2490]
gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
virus NI-2490]
gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus
NW-LW]
Length = 321
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 123/199 (61%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRALK- 143
EP+L++ RFV+FPI Y++IW MYKKA ASFWT +EVDLSK + ++N E +K
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKKLSNEEQYFIKN 61
Query: 144 -----------TGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
E A +E Y F+I + Y + I+ K
Sbjct: 62 ILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKE 121
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETM +KKK++WA +WI+++ +SFGER+IAFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 122 KEHLFNAIETMDFIKKKSEWARKWISNKKASFGERLIAFAAVEGIFFSGSFAAIFWLKKR 181
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 182 GLMPGLTFSNELISRDEGL 200
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 70/84 (83%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL+ W KL+ +E+YFI ++LAFFAASDGIVNENL ERF EVQ +EARCFYGFQI
Sbjct: 39 VDLSKDLADWKKLSNEEQYFIKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQI 98
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMEN+HSEMYSLLIDTYI +E+
Sbjct: 99 AMENIHSEMYSLLIDTYISSTKEK 122
>gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus]
Length = 321
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 122/199 (61%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRALK- 143
EP+L++ RFV+FPI Y++IW MYKKA ASFWT +EVDLSK + + N E +K
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKKLNNEEQYFIKN 61
Query: 144 -----------TGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
E A +E Y F+I + Y + I+ K
Sbjct: 62 ILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKE 121
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETM +KKK++WA +WI+++ +SFGER+IAFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 122 KEHLFNAIETMDFIKKKSEWARKWISNKKASFGERLIAFAAVEGIFFSGSFAAIFWLKKR 181
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 182 GLMPGLTFSNELISRDEGL 200
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 69/84 (82%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL+ W KL +E+YFI ++LAFFAASDGIVNENL ERF EVQ +EARCFYGFQI
Sbjct: 39 VDLSKDLADWKKLNNEEQYFIKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQI 98
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMEN+HSEMYSLLIDTYI +E+
Sbjct: 99 AMENIHSEMYSLLIDTYISSTKEK 122
>gi|406603358|emb|CCH45150.1| Ribonucleoside-diphosphate reductase small chain [Wickerhamomyces
ciferrii]
Length = 421
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 123/214 (57%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS---------------------- 120
++E + EPLL +N RRFV+FPI+Y +IW+ YKKAEAS
Sbjct: 90 LKEQEKDEPLLVENKRRFVLFPIKYHEIWQAYKKAEASFWTAEEIDLSKDIHDWNERLND 149
Query: 121 -----------FWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
F+ A + +++ +V NF ++ E K Y F+I +
Sbjct: 150 NERFFISRVLAFFAASDGIVNENLVENFSAE-VQIPEAKCF------YGFQIMMENIHSE 202
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K IET+PC+K+KADWALRWIADE + FGER++AFA+VEGI
Sbjct: 203 TYSLLIDTYIKDPKQAEYLFNAIETIPCIKEKADWALRWIADEEALFGERLVAFAAVEGI 262
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 263 FFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 296
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+CFYG
Sbjct: 132 EEIDLSKDIHDWNERLNDNERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYG 191
Query: 307 FQIAMENVHSEMYSLLIDTYIKD 329
FQI MEN+HSE YSLLIDTYIKD
Sbjct: 192 FQIMMENIHSETYSLLIDTYIKD 214
>gi|356505372|ref|XP_003521465.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
[Glycine max]
Length = 329
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 118/206 (57%), Gaps = 39/206 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
++ E LL NP RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 3 SIPEERLLTPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWATLSDGERH 62
Query: 132 --------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R T E + +R Y F+I + Y +
Sbjct: 63 FITHVLAFFAASDGIVLENLAGRF--TKEIQLPEAR-AFYGFQIAIENIHSEMYSLLLET 119
Query: 178 KITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I + I T+PC+ KKA WALRWI D + SF ER++AFA VEGIFFSGSF +
Sbjct: 120 YIKDSTEKNRLFRAINTIPCITKKAQWALRWI-DASESFAERLVAFACVEGIFFSGSFCA 178
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 179 IFWLKKRGLMPGLTFSNELISRDEGL 204
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 71/88 (80%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HW L+ E++FI+HVLAFFAASDGIV ENL RFT+E+Q+ EAR FY
Sbjct: 40 TAEEVDLSQDLRHWATLSDGERHFITHVLAFFAASDGIVLENLAGRFTKEIQLPEARAFY 99
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLL++TYIKD E+
Sbjct: 100 GFQIAIENIHSEMYSLLLETYIKDSTEK 127
>gi|384096999|ref|ZP_09998120.1| ribonucleoside-diphosphate reductase small chain, partial
[Imtechella halotolerans K1]
gi|383836967|gb|EID76367.1| ribonucleoside-diphosphate reductase small chain, partial
[Imtechella halotolerans K1]
Length = 337
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 117/201 (58%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L++N RFVIFPIQ++DIW+ YKK EA FWTAEE+DL
Sbjct: 16 VEPILQENKDRFVIFPIQHKDIWEWYKKQEACFWTAEEIDLHQDLTDWNNKLSDDERYFI 75
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K ++ F E A + NE Y F+I + I Y +
Sbjct: 76 KHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 135
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K K IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLK
Sbjct: 136 KEKNILFKAIENFPAIKKKADWALKWI--ESPSFAERLIAFAAVEGIFFSGAFCSIFWLK 193
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 194 KRGLMPGLTFSNELISRDEGM 214
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I +DL+ WN KL+ DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 40 WYKKQ---EACFWTAEEIDLHQDLTDWNNKLSDDERYFIKHILAFFAASDGIVNENLAEN 96
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 97 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEKEK 138
>gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
pombe 972h-]
gi|9297110|sp|P36603.2|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
pombe]
Length = 391
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 118/206 (57%), Gaps = 33/206 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT-------- 135
+E+ E +LR NP RFV+FPI+Y +IW+ YKKAEASFWTAEE+DLSK +V
Sbjct: 60 KEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNKLNAD 119
Query: 136 -NFEIRALKTGEEKASHSRNEPYLFRIK---LAPGGICRYKVKKGGKITGGKT------- 184
+ I + + NE L R P C Y + + +T
Sbjct: 120 ERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDT 179
Query: 185 --------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I TM +K KA WALRWI DE S++ R++AFA+VEGIFFSGSFAS
Sbjct: 180 YIREPKEKQRHFDAILTMGSIKAKAKWALRWINDEDSTYAIRLVAFAAVEGIFFSGSFAS 239
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 240 IFWLKKRGLMPGLTFSNELICRDEGL 265
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL DE+YFIS VLA+FAASDGIVNENL+ERF+ EVQI EARC YG
Sbjct: 101 EEIDLSKDLVDWDNKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYG 160
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLL+DTYI++ +E+
Sbjct: 161 FQIMIENIHSETYSLLLDTYIREPKEK 187
>gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe]
gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small
Length = 391
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 118/206 (57%), Gaps = 33/206 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT-------- 135
+E+ E +LR NP RFV+FPI+Y +IW+ YKKAEASFWTAEE+DLSK +V
Sbjct: 60 KEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNKLNAD 119
Query: 136 -NFEIRALKTGEEKASHSRNEPYLFRIK---LAPGGICRYKVKKGGKITGGKT------- 184
+ I + + NE L R P C Y + + +T
Sbjct: 120 ERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDT 179
Query: 185 --------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I TM +K KA WALRWI DE S++ R++AFA+VEGIFFSGSFAS
Sbjct: 180 YIREPKEKQRHFDAILTMGSIKAKAKWALRWINDEDSTYAIRLVAFAAVEGIFFSGSFAS 239
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 240 IFWLKKRGLMPGLTFSNELICRDEGL 265
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL DE+YFIS VLA+FAASDGIVNENL+ERF+ EVQI EARC YG
Sbjct: 101 EEIDLSKDLVDWDNKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYG 160
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLL+DTYI++ +E+
Sbjct: 161 FQIMIENIHSETYSLLLDTYIREPKEK 187
>gi|408684509|gb|AFU76948.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408684676|gb|AFU77114.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408684843|gb|AFU77280.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408685011|gb|AFU77447.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408685516|gb|AFU77949.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408686019|gb|AFU78449.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408686356|gb|AFU78784.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408686691|gb|AFU79117.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408686859|gb|AFU79284.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408687195|gb|AFU79618.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408687363|gb|AFU79785.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408687530|gb|AFU79951.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408687698|gb|AFU80118.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408687866|gb|AFU80285.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408688034|gb|AFU80452.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|408688203|gb|AFU80620.1| small subunit ribonucleotide reductase [Myxoma virus]
Length = 322
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 122/202 (60%), Gaps = 32/202 (15%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----VVVTNFEIRA 141
+E EP+L+++ R+V+FPIQY DIW MYKKA ASFWT EEVD+SK V+T E
Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRVLTPDEKYF 60
Query: 142 LK-------TGEEKASHSRNEPYLFRIKLAPGG--------------------ICRYKVK 174
+K + + + E + +++A I Y +
Sbjct: 61 IKHILAFFAASDGIVNENLAERFYAEVQIAEARCFYGFQIAMENIHSEMYSLLIDTYIID 120
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K K IETM C+K+KA+W +WI ++ +++ ER+IAFASVEGIFFSGSFA+IFWL
Sbjct: 121 LQEKEKLFKAIETMDCIKQKAEWVQKWIRNKDATYAERLIAFASVEGIFFSGSFAAIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRG MPGLTFSNELISRDE L
Sbjct: 181 KKRGKMPGLTFSNELISRDEGL 202
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W LT DEKYFI H+LAFFAASDGIVNENL ERF EVQI EARCFYGF
Sbjct: 39 EEVDISKDLKDWRVLTPDEKYFIKHILAFFAASDGIVNENLAERFYAEVQIAEARCFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYI D +E+
Sbjct: 99 QIAMENIHSEMYSLLIDTYIIDLQEK 124
>gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
Length = 320
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L+++ RFVIFPI+Y DIWKMYK++ ASFWT EEVDLSK +
Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + + + S +R Y F+I ++ I Y
Sbjct: 62 ILAFFASSDGIVNENLAERFYVDVQCSEARC-FYGFQIAMENIHSEMYSLLIDTYVRDNI 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K+ IETM CVKKKADWA +WI+ +GERV+AFA+VEGIFFSGSFA+IFW+KK
Sbjct: 121 EKMHLFNAIETMECVKKKADWARKWISSN-KVYGERVVAFAAVEGIFFSGSFAAIFWIKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W+KLT+DEKYFI H+LAFFA+SDGIVNENL ERF +VQ +EARCFYGF
Sbjct: 37 EEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTY++D E+
Sbjct: 97 QIAMENIHSEMYSLLIDTYVRDNIEK 122
>gi|417659|sp|P32209.1|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus]
Length = 274
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L+++ RFVIFPI+Y DIWKMYK++ ASFWT EEVDLSK +
Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + + + S +R Y F+I ++ I Y
Sbjct: 62 ILAFFASSDGIVNENLAERFYVDVQCSEARC-FYGFQIAMENIHSEMYSLLIDTYVRDNI 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K+ IETM CVKKKADWA +WI+ +GERV+AFA+VEGIFFSGSFA+IFW+KK
Sbjct: 121 EKMHLFNAIETMECVKKKADWARKWISSN-KVYGERVVAFAAVEGIFFSGSFAAIFWIKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W+KLT+DEKYFI H+LAFFA+SDGIVNENL ERF +VQ +EARCFYGF
Sbjct: 37 EEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTY++D E+
Sbjct: 97 QIAMENIHSEMYSLLIDTYVRDNIEK 122
>gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 380
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 119/206 (57%), Gaps = 32/206 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------ 130
++ ++ EPLL +NP RFV+FPIQ ++W+MYKKAEA FWTAEE+DL+
Sbjct: 54 MEGTLKPEPLLVENPGRFVLFPIQDNEVWQMYKKAEACFWTAEELDLAHDHKDWEGLTDD 113
Query: 131 -----KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICR 170
K V+ F E AS+ +E L + G I
Sbjct: 114 ERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIAIENIHSEVYSLLIDT 173
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y K +ET+PCV++KA WALRW + +S+ ER++AFA+VEGIFFSGSF +
Sbjct: 174 YVKDAAEKTHLFNAMETVPCVRRKARWALRWCDPKLASYAERLVAFAAVEGIFFSGSFCA 233
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
+FWLKKRGLMPGL FSNELISRDE L
Sbjct: 234 VFWLKKRGLMPGLCFSNELISRDEGL 259
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 69/83 (83%), Gaps = 4/83 (4%)
Query: 255 DLSH----WNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIA 310
DL+H W LT DE++F+ HVLAFFAASDGIVNENL F+ E+Q++EARCFYGFQIA
Sbjct: 99 DLAHDHKDWEGLTDDERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIA 158
Query: 311 MENVHSEMYSLLIDTYIKDQEER 333
+EN+HSE+YSLLIDTY+KD E+
Sbjct: 159 IENIHSEVYSLLIDTYVKDAAEK 181
>gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus]
Length = 321
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 122/199 (61%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRALK- 143
EP+L++ RFV+FPI Y++IW MYKKA ASFWT +EVDLSK + + N E +K
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWKKLNNEEQYFIKN 61
Query: 144 -----------TGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
E A +E Y F+I + Y + I+ K
Sbjct: 62 ILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKE 121
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETM +KKK++WA +WI+++ +SFGER+IAFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 122 KEYLFNAIETMDFIKKKSEWARKWISNKKASFGERLIAFAAVEGIFFSGSFAAIFWLKKR 181
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 182 GLMPGLTFSNELISRDEGL 200
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 69/84 (82%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DLS W KL +E+YFI ++LAFFAASDGIVNENL ERF EVQ +EARCFYGFQI
Sbjct: 39 VDLSKDLSDWKKLNNEEQYFIKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQI 98
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMEN+HSEMYSLLIDTYI +E+
Sbjct: 99 AMENIHSEMYSLLIDTYISSTKEK 122
>gi|336171888|ref|YP_004579026.1| ribonucleoside-diphosphate reductase [Lacinutrix sp. 5H-3-7-4]
gi|334726460|gb|AEH00598.1| Ribonucleoside-diphosphate reductase [Lacinutrix sp. 5H-3-7-4]
Length = 327
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 117/201 (58%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L++N RFVIFPIQ+ D+W+ YKK+EAS WTAEE+DL
Sbjct: 5 VEPILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSSKLTDDERYFI 64
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K V+ F E A + NE Y F+I + I Y +
Sbjct: 65 KHVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 124
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET P +KKKA+WAL+WI E+ SF ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 125 KEKAMLFNAIETFPAIKKKAEWALKWI--ESPSFAERLIAFAAVEGIFFSGSFCSIFWLK 182
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 183 KRGLMPGLTFSNELISRDEGM 203
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL+ W+ KLT DE+YFI HVLAFFAASDGIVNENL E F EVQ +EA+ FYG
Sbjct: 41 EEIDLHQDLTDWSSKLTDDERYFIKHVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYG 100
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 101 FQIMMENIHSETYSLLIDTYVKDEKEK 127
>gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor]
Length = 321
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 122/199 (61%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRALK- 143
EP+L++ RFV+FPI Y++IW MYKKA ASFWT +EVDLSK + + N E +K
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKKLNNEEQYFIKN 61
Query: 144 -----------TGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
E A +E Y F+I + Y + I+ K
Sbjct: 62 ILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISSTKE 121
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETM +KKK++WA +WI+++ +SFGER+IAFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 122 KEHLFNAIETMDFIKKKSEWARKWISNKKASFGERLIAFAAVEGIFFSGSFAAIFWLKKR 181
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 182 GLMPGLTFSNELISRDEGL 200
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 69/84 (82%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL+ W KL +E+YFI ++LAFFAASDGIVNENL ERF EVQ +EARCFYGFQI
Sbjct: 39 VDLSKDLADWKKLNNEEQYFIKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQI 98
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
A+EN+HSEMYSLLIDTYI +E+
Sbjct: 99 AIENIHSEMYSLLIDTYISSTKEK 122
>gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
KT0803]
gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
KT0803]
Length = 325
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 116/202 (57%), Gaps = 35/202 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFVIFPI++ DIW YKK EA FWTAEE+DL
Sbjct: 3 QIEPILQENKDRFVIFPIKHHDIWDWYKKMEACFWTAEEIDLHEDLSDWNNKLSADERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + NE Y F+I + I Y
Sbjct: 63 LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K K IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWL
Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE +
Sbjct: 181 KKRGLMPGLTFSNELISRDEGM 202
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 77/102 (75%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I EDLS WN KL+ DE+YF+ H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEACFWTAEEIDLHEDLSDWNNKLSADERYFLKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+K+++E+
Sbjct: 85 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKNEKEK 126
>gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-2A]
gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-2A]
Length = 325
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 115/199 (57%), Gaps = 35/199 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L++N RFVIFPI++ DIW+ YKK EASFWTAEE+DL
Sbjct: 4 VEPILQENENRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNTKLTEDEKYFI 63
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG 182
K ++ F E A + NE Y F+I + Y + +
Sbjct: 64 KHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDD 123
Query: 183 -------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IE P +KKKADWALRWI ++ SF ER+IAFA+VEGIFFSG+F SI+WLK
Sbjct: 124 VEKDRLFKAIEVFPAIKKKADWALRWI--DSDSFAERLIAFAAVEGIFFSGAFCSIYWLK 181
Query: 236 KRGLMPGLTFSNELISRDE 254
KRGLMPGLTFSNELISRDE
Sbjct: 182 KRGLMPGLTFSNELISRDE 200
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DL+ WN KLT DEKYFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLTDWNTKLTEDEKYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD E+
Sbjct: 85 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDVEK 126
>gi|260061082|ref|YP_003194162.1| ribonucleoside-diphosphate reductase small chain [Robiginitalea
biformata HTCC2501]
gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain
[Robiginitalea biformata HTCC2501]
Length = 328
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 116/200 (58%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L++N RFVIFPIQ+ D+W+ YKK EA FWTAEE+DL K
Sbjct: 6 EPILKENKDRFVIFPIQHHDLWEWYKKCEACFWTAEEIDLHQDLSDWNNKLSDDEKYFIK 65
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + NE Y F+I + I Y +
Sbjct: 66 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLKK
Sbjct: 126 EKNVLFQAIENFPAIKKKADWALKWI--ESPSFAERLIAFAAVEGIFFSGAFCSIFWLKK 183
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE +
Sbjct: 184 RGLMPGLTFSNELISRDEGM 203
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DLS WN KL+ DEKYFI H+LAFFAASDGIVNENL E F EVQ +EA+ FYG
Sbjct: 41 EEIDLHQDLSDWNNKLSDDEKYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYG 100
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 101 FQIMMENIHSETYSLLIDTYVKDEKEK 127
>gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus]
gi|56404692|sp|Q9DHU2.1|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus]
Length = 325
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 117/204 (57%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N EP+L+ ++V+FPI Y+DIWKMYKKA ASFWT EEVDLSK
Sbjct: 2 NTSCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKN 61
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + E + S +R Y F+I + Y + I
Sbjct: 62 FIKHILAFFAASDGIVNENLAERFYSEVQISEARC-FYGFQIAMENIHSEMYSLLIDTYI 120
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IE M CVK+KA+WA +WI + ++GER++AFA+VEGIFFSGSFA+IF
Sbjct: 121 LDSKEKNYLFNAIENMNCVKQKANWAKKWIESKNRTYGERLVAFAAVEGIFFSGSFAAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W+KKRGLMPGLTFSNELISRDE L
Sbjct: 181 WIKKRGLMPGLTFSNELISRDEGL 204
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D S W KL+ +EK FI H+LAFFAASDGIVNENL ERF EVQI+EARCFYGF
Sbjct: 41 EEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYI D +E+
Sbjct: 101 QIAMENIHSEMYSLLIDTYILDSKEK 126
>gi|381187133|ref|ZP_09894698.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Flavobacterium frigoris PS1]
gi|379650743|gb|EIA09313.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Flavobacterium frigoris PS1]
Length = 325
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 115/200 (57%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFVIFPI++ DIW+ YK EASFWTAEE+DLS
Sbjct: 3 QIEPILQENKNRFVIFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWNNKLNDDERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + NE Y F+I + I Y
Sbjct: 63 VKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K +E P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SI+WL
Sbjct: 123 DAEKDQLFNALEVFPAIKKKADWALQWI--ESDSFAERLIAFAAVEGIFFSGAFCSIYWL 180
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 181 KKRGLMPGLTFSNELISRDE 200
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL+ WN KL DE+YF+ H+LAFFAASDGIVNENL E F EVQ EA+ FYG
Sbjct: 40 EEIDLSQDLNDWNNKLNDDERYFVKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYG 99
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+KD E+
Sbjct: 100 FQIMMENIHSETYSLLIDTYVKDDAEK 126
>gi|351721787|ref|NP_001237733.1| ribonucleotide reductase small subunit [Glycine max]
gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max]
Length = 339
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 117/204 (57%), Gaps = 39/204 (19%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
E EP+L + +RF +FPI+Y+ IW+MYKKAEASFWTAEEVDLS
Sbjct: 15 EQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWETLSVSEKHFI 74
Query: 131 -----------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+V+ N R L + + + Y F+I + Y + I
Sbjct: 75 THVLAFFAASDGIVLENLAARFLSDVQIPEARAF---YGFQIAMENIHSEMYSLLLETYI 131
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ IE +PCV +KA+WAL WI ++SF ER++AFA VEGIFFSGSF +IF
Sbjct: 132 KDSREKHKLFNAIENLPCVARKAEWALSWI-HSSTSFAERLVAFACVEGIFFSGSFCAIF 190
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 191 WLKKRGLMPGLTFSNELISRDEGL 214
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 65/79 (82%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D+ HW L+ EK+FI+HVLAFFAASDGIV ENL RF +VQI EAR FYGFQIAMEN+
Sbjct: 59 DVQHWETLSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENI 118
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++TYIKD E+
Sbjct: 119 HSEMYSLLLETYIKDSREK 137
>gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga
hutchinsonii ATCC 33406]
gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga
hutchinsonii ATCC 33406]
Length = 324
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 124/203 (61%), Gaps = 42/203 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK- 148
EPLL++N RFV+FPI++ DIW MYK+ EASFWTAEE+DLS+ ++ + L GE
Sbjct: 6 EPLLKENKNRFVLFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLI---DWANLNDGERHF 62
Query: 149 ASHSR----------NEP----YLFRIKLAPGGICRYKVKKGGKITGGKT---------- 184
SH NE +L ++++ P C Y + + +T
Sbjct: 63 ISHVLAFFAASDGIVNENLAVNFLEKVQI-PEAKCFYGFQIMMENIHSETYSLLIDTYIK 121
Query: 185 -----------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
I+T+PCVKKKADWALR+I + SF E +IAFA+VEGIFFSGSF S+FW
Sbjct: 122 DPKEKDRLFNAIDTVPCVKKKADWALRFI--DNGSFIENIIAFAAVEGIFFSGSFCSVFW 179
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGL+FSNELISRDE L
Sbjct: 180 LKKRGLMPGLSFSNELISRDEGL 202
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L E++FISHVLAFFAASDGIVNENL F ++VQI EA+CFYGF
Sbjct: 41 EEIDLSQDLIDWANLNDGERHFISHVLAFFAASDGIVNENLAVNFLEKVQIPEAKCFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE YSLLIDTYIKD +E+
Sbjct: 101 QIMMENIHSETYSLLIDTYIKDPKEK 126
>gi|452819577|gb|EME26633.1| ribonucleoside-diphosphate reductase subunit M2 [Galdieria
sulphuraria]
Length = 464
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 121/202 (59%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK- 148
EPLL ++ RFV+FPI+Y+ IW++YK+AEASFWT EEVDLS+ + + +L + E+
Sbjct: 146 EPLLLEDTSRFVLFPIRYRQIWELYKRAEASFWTVEEVDLSQDLR---DWNSLHSSEQHF 202
Query: 149 ASH------------SRNEPYLFRIKL-APGGICRYKVKKGGKITGGK------------ 183
SH + N F ++ P C Y + + +
Sbjct: 203 ISHVLAFFAASDGIVNENLAARFSTEVQVPEARCFYGFQMAMENVHSEMYALLIDTYIRD 262
Query: 184 ---------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
IE + CVKKKADW+L+WI +SSF ER++AFA+VEGIFFSGSF SIFWL
Sbjct: 263 MAEKRRLFYAIENLTCVKKKADWSLKWIRC-SSSFAERLVAFAAVEGIFFSGSFCSIFWL 321
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 322 KKRGLMPGLTFSNELISRDEGL 343
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 79/112 (70%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F + I+ L KR T E + +DL WN L E++FISHVLAFFAASD
Sbjct: 157 VLFPIRYRQIWELYKRAEASFWTV--EEVDLSQDLRDWNSLHSSEQHFISHVLAFFAASD 214
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENL RF+ EVQ+ EARCFYGFQ+AMENVHSEMY+LLIDTYI+D E+
Sbjct: 215 GIVNENLAARFSTEVQVPEARCFYGFQMAMENVHSEMYALLIDTYIRDMAEK 266
>gi|17551968|ref|NP_497821.1| Protein RNR-2 [Caenorhabditis elegans]
gi|1172941|sp|P42170.1|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|3873950|emb|CAA84688.1| Protein RNR-2 [Caenorhabditis elegans]
Length = 381
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 121/209 (57%), Gaps = 34/209 (16%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------- 133
+ V E EP+L+D RFVIFP+++ DIW YKKA ASFWT EEVDL K +
Sbjct: 53 SEVNELDADEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMN 112
Query: 134 -------------------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGG 167
+ N + + E + S +R Y F+I ++
Sbjct: 113 GDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARF-FYGFQIAIENIHSEMYSKL 171
Query: 168 ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I Y + + T ++ +KKKADWALRWI+D+ +SF ER+IAFA+VEGIFFSGS
Sbjct: 172 IETYIRDETERNTLFNAVDEFEFIKKKADWALRWISDKKASFAERLIAFAAVEGIFFSGS 231
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FASIFWLKKRGLMPGLT SNELISRDE L
Sbjct: 232 FASIFWLKKRGLMPGLTHSNELISRDEGL 260
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W K+ DE+YFIS +LAFFAASDGIVNENL ERF+ EVQ++EAR FYGF
Sbjct: 97 EEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGF 156
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYS LI+TYI+D+ ER
Sbjct: 157 QIAIENIHSEMYSKLIETYIRDETER 182
>gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|41019487|sp|P42521.2|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum]
gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
Length = 338
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 117/201 (58%), Gaps = 36/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA 149
EP+L++N RFV+FPI+Y DIW+MYKKA AS W AEE+DL V ++E +
Sbjct: 12 EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNV-DWEYKLTDNERHFI 70
Query: 150 SH------------SRNEPYLFRIKLA-PGGICRYKVK---------------------K 175
SH + N F ++ P C Y + K
Sbjct: 71 SHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDK 130
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+PC+KKKA+WALRWI D + SF ER++AFA+VEGIFFSGSF SIFWLK
Sbjct: 131 QTKDKLFNAIETIPCIKKKAEWALRWIND-SDSFAERLVAFAAVEGIFFSGSFCSIFWLK 189
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLM GLTFSNELISRDE L
Sbjct: 190 KRGLMQGLTFSNELISRDEGL 210
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 65/73 (89%)
Query: 261 KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320
KLT +E++FISHVLAFFAASDGIVNENL RF EVQI EARCFYGFQIA+EN+HSE YS
Sbjct: 61 KLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYS 120
Query: 321 LLIDTYIKDQEER 333
LLI+TYIKD++ +
Sbjct: 121 LLIETYIKDKQTK 133
>gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus]
gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus]
gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus]
Length = 325
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 117/204 (57%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N EP+L+ ++V+FPI Y+DIWKMYKKA ASFWT EEVDLSK
Sbjct: 2 NTPCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKN 61
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + E + S +R Y F+I + Y + I
Sbjct: 62 FIKHILAFFAASDGIVNENLAERFYSEVQISEARC-FYGFQIAMENIHSEMYSLLIDTYI 120
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IE M CVK+KA+WA +WI + ++GER++AFA+VEGIFFSGSFA+IF
Sbjct: 121 LDSKEKNYLFNAIENMNCVKQKANWAKKWIESKNRTYGERLVAFAAVEGIFFSGSFAAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W+KKRGLMPGLTFSNELISRDE L
Sbjct: 181 WIKKRGLMPGLTFSNELISRDEGL 204
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D S W KL+ +EK FI H+LAFFAASDGIVNENL ERF EVQI+EARCFYGF
Sbjct: 41 EEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYI D +E+
Sbjct: 101 QIAMENIHSEMYSLLIDTYILDSKEK 126
>gi|403371741|gb|EJY85755.1| Ribonucleoside-diphosphate reductase small chain [Oxytricha
trifallax]
Length = 379
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EPLL DNP RFVI PI+Y DIWKMYK A+FWT+EE+DL+ K
Sbjct: 61 EPLLEDNPNRFVILPIKYNDIWKMYKDQMAAFWTSEEIDLATDVKDWERLNDNERHFIKH 120
Query: 133 VVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG-- 182
V+ F E A E Y F++ + Y V I+
Sbjct: 121 VLAFFAASDGIVNENLAQRFCTEIQVPEARCFYGFQMMMENIHSETYSVLIDTLISDPHE 180
Query: 183 -----KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K I +P V KKA+WA++WI E++SF ER+IAFA++EGIFFSGSF SIFWLKKR
Sbjct: 181 KEFLFKAITNIPVVTKKAEWAIKWIG-ESASFAERLIAFAAIEGIFFSGSFCSIFWLKKR 239
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE +
Sbjct: 240 GLMPGLTFSNELISRDEGM 258
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 67/88 (76%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
++E I D+ W +L +E++FI HVLAFFAASDGIVNENL +RF E+Q+ EARCFY
Sbjct: 94 TSEEIDLATDVKDWERLNDNERHFIKHVLAFFAASDGIVNENLAQRFCTEIQVPEARCFY 153
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQ+ MEN+HSE YS+LIDT I D E+
Sbjct: 154 GFQMMMENIHSETYSVLIDTLISDPHEK 181
>gi|409124160|ref|ZP_11223555.1| ribonucleoside-diphosphate reductase small chain [Gillisia sp.
CBA3202]
Length = 325
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 115/200 (57%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFVIFPI++ DIW YKK EASFWTAEE+DL
Sbjct: 3 QLEPILQENKDRFVIFPIKHHDIWDWYKKMEASFWTAEEIDLHQDLSDWNNKLNADERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITG 181
K ++ F E A + NE Y F+I + Y + +
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWL
Sbjct: 123 EKEKNQLFQAIEHFPAIKKKADWALQWI--ESDSFAERLIAFAAVEGIFFSGAFCSIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 181 KKRGLMPGLTFSNELISRDE 200
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DLS WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLSDWNNKLNADERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 85 FVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEKEK 126
>gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia]
Length = 507
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 119/212 (56%), Gaps = 34/212 (16%)
Query: 78 QVSAPV-QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------ 130
Q S PV Q+N EPLL+ NP RFV+FPI+Y DIW MYK+ +ASFWTAEE+DL
Sbjct: 176 QTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLYQDLKDW 235
Query: 131 -----------KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRY 171
K V+ F E A E Y F+I + Y
Sbjct: 236 EKLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIAMENIHSETY 295
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ IT I+ +P ++KKA WA++WI + SF ER+IAFA+VEGIFF
Sbjct: 296 SLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWINNN-DSFAERLIAFAAVEGIFF 354
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSF +IFW+KKR LMPGLTFSNELISRDE L
Sbjct: 355 SGSFCAIFWIKKRSLMPGLTFSNELISRDEGL 386
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W KLT DEK+FI +VLAFFAASDGIVNENL ++F EVQ+ EARCFYGF
Sbjct: 224 EEIDLYQDLKDWEKLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGF 283
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYI D+ E+
Sbjct: 284 QIAMENIHSETYSLLIDTYITDENEK 309
>gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo]
Length = 399
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 115/208 (55%), Gaps = 46/208 (22%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDI-------------------------WKMYKKAEA--- 119
E EPLLRDNPRRFV+FPIQY DI W+ K E
Sbjct: 75 EEEPLLRDNPRRFVVFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWEKLKSEEKHFV 134
Query: 120 ----SFWTAEEVDLSKVVVTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGI 168
+F+ A + +++ +V F E R + + +E Y I
Sbjct: 135 SHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLID------ 188
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
Y + IETMPCVK+KADWALRWI DE SSFGERV+AFA+VEGIFFSGSF
Sbjct: 189 -TYVKDPTERDFLFNAIETMPCVKEKADWALRWINDEQSSFGERVVAFAAVEGIFFSGSF 247
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
ASIFWLKKRG+MPGLTFSNELISRDE L
Sbjct: 248 ASIFWLKKRGVMPGLTFSNELISRDEGL 275
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+S W KL +EK+F+SHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYG+
Sbjct: 112 EEVDLSKDISDWEKLKSEEKHFVSHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGY 171
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTY+KD ER
Sbjct: 172 QIAVENIHSEMYSLLIDTYVKDPTER 197
>gi|375013326|ref|YP_004990314.1| ribonucleotide reductase subunit beta [Owenweeksia hongkongensis
DSM 17368]
gi|359349250|gb|AEV33669.1| ribonucleotide reductase, beta subunit [Owenweeksia hongkongensis
DSM 17368]
Length = 324
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 117/202 (57%), Gaps = 35/202 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N R+V+FPI++ DIW+ YKK EASFWTAEE+DL
Sbjct: 3 QQEPILQENKNRYVLFPIEHHDIWEWYKKQEASFWTAEEIDLHQDLTDWENKLNDDERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K V+ F E A + NE Y F+I + I Y
Sbjct: 63 IKHVLAFFAASDGIVNENLAENFVNEVQYTEAKFFYGFQIMMENIHSETYSLLIDTYIKD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K + +E P +KKKADWA++WI E+ SF ER+IAFA+VEGIFFSGSF SIFWL
Sbjct: 123 KEDRNRLFTALENFPAIKKKADWAIKWI--ESDSFAERLIAFAAVEGIFFSGSFCSIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 181 KKRGLMPGLTFSNELISRDEGL 202
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I +DL+ W NKL DE+YFI HVLAFFAASDGIVNENL E
Sbjct: 28 WYKKQ---EASFWTAEEIDLHQDLTDWENKLNDDERYFIKHVLAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ TEA+ FYGFQI MEN+HSE YSLLIDTYIKD+E+R
Sbjct: 85 FVNEVQYTEAKFFYGFQIMMENIHSETYSLLIDTYIKDKEDR 126
>gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain
[Maribacter sp. HTCC2170]
gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain
[Maribacter sp. HTCC2170]
Length = 328
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 114/201 (56%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L++N RFVIFPIQ+ D+W+ YKK EA WTAEE+DL
Sbjct: 5 VEPILQENKDRFVIFPIQHHDLWEWYKKQEACIWTAEEIDLHQDLTDWNTKLNDDEKYFI 64
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K ++ F E A + NE Y F+I + I Y
Sbjct: 65 KHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDD 124
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K K IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSGSF SIFWLK
Sbjct: 125 KEKDILFKAIENFPAIKKKADWALKWI--ESPSFAERLIAFAAVEGIFFSGSFCSIFWLK 182
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 183 KRGLMPGLTFSNELISRDEGM 203
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I +DL+ WN KL DEKYFI H+LAFFAASDGIVNENL E
Sbjct: 29 WYKKQ---EACIWTAEEIDLHQDLTDWNTKLNDDEKYFIKHILAFFAASDGIVNENLAEN 85
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD +E+
Sbjct: 86 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDKEK 127
>gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus]
Length = 321
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 121/199 (60%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRALK- 143
EP+L++ RFV+FPI Y++IW MYKKA ASFWT +EVDLSK + + N E +K
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKKLNNEEQYFIKN 61
Query: 144 -----------TGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
E A +E Y F+I + Y + I+ K
Sbjct: 62 ILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKE 121
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETM +KKK++WA +WI+++ +SFGER+IAFA+VEGIFF GSFA+IFWLKKR
Sbjct: 122 KEHLFNAIETMDFIKKKSEWARKWISNKKASFGERLIAFAAVEGIFFCGSFAAIFWLKKR 181
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 182 GLMPGLTFSNELISRDEGL 200
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 69/84 (82%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL+ W KL +E+YFI ++LAFFAASDGIVNENL ERF EVQ +EARCFYGFQI
Sbjct: 39 VDLSKDLADWKKLNNEEQYFIKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQI 98
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMEN+HSEMYSLLIDTYI +E+
Sbjct: 99 AMENIHSEMYSLLIDTYISSTKEK 122
>gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis]
Length = 335
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 116/200 (58%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL N RFV+FPI+Y+DIW+MYKKAEASFWTAEEVDL V
Sbjct: 14 EPLLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWERLSDDERHFVSH 73
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + A E + +R Y F+I + Y + I K
Sbjct: 74 VLAFFAASDGIVNENLGARFMQEVQVPEAR-AFYGFQIAMENIHSEMYSLLLEAYIKDPK 132
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I+T+P V+KKA WAL+WI + + F ER+IAFA VEGIFFSGSF SIFWLKK
Sbjct: 133 EKDKLFHAIDTVPVVRKKAHWALKWI-NGSDLFSERLIAFACVEGIFFSGSFCSIFWLKK 191
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 192 RGLMPGLTFSNELISRDEGL 211
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D+ W +L+ DE++F+SHVLAFFAASDGIVNENL RF QEVQ+ EAR FYGFQIAMEN+
Sbjct: 56 DVKDWERLSDDERHFVSHVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENI 115
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++ YIKD +E+
Sbjct: 116 HSEMYSLLLEAYIKDPKEK 134
>gi|154340038|ref|XP_001565976.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 388
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 39/206 (18%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 64 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVALNDGERH 123
Query: 132 --------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+VV N R + + K +R Y F++ + Y V
Sbjct: 124 FIKHVLAFFAGSDGIVVENLAQRFM--SDVKVPEARA-FYGFQLMMENIHSETYSVLLDT 180
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
IT + I+T+PC++KKA+WA+RWI AS F ER+I FA+VEGIFFSGSF +
Sbjct: 181 YITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGSFCA 239
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
+FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 240 LFWLKKRGLMPGLTFSNELISRDEGL 265
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 103 EEIDLGNDMKDWVALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGF 162
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 163 QLMMENIHSETYSVLLDTYITDSEEK 188
>gi|449329429|gb|AGE95701.1| ribonucleoside diphosphate reductase small chain [Encephalitozoon
cuniculi]
Length = 325
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 113/204 (55%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
ETE LL RFV+ PI+Y DIWKMYKKAE+SFWT EEV L K +
Sbjct: 6 ETELLLDPREERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFI 65
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR---------YK 172
+ N + + E K +R + + ++A I Y
Sbjct: 66 SYVLAFFAASDGIVNLNLVERFSTEVKVLEAR---FFYGFQMAIENIHSEMYSLLIDTYI 122
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K I T+P VK+KADWA+RWI D+ S F R++AFA VEGIFFSG+FASIF
Sbjct: 123 RDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSDFATRLVAFACVEGIFFSGAFASIF 182
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 183 WLKKRGLMPGLTFSNELISRDEGL 206
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E +S D+D+ W KL E++FIS+VLAFFAASDGIVN NLVERF+ EV++ EAR FYGF
Sbjct: 43 EEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTYI+D +E+
Sbjct: 103 QMAIENIHSEMYSLLIDTYIRDNDEK 128
>gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|51701822|sp|Q8SRR2.1|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
cuniculi GB-M1]
Length = 325
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 113/204 (55%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
ETE LL RFV+ PI+Y DIWKMYKKAE+SFWT EEV L K +
Sbjct: 6 ETELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFI 65
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR---------YK 172
+ N + + E K +R + + ++A I Y
Sbjct: 66 SYVLAFFAASDGIVNLNLVERFSTEVKVLEAR---FFYGFQMAIENIHSEMYSLLIDTYI 122
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K I T+P VK+KADWA+RWI D+ S F R++AFA VEGIFFSG+FASIF
Sbjct: 123 RDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSDFATRLVAFACVEGIFFSGAFASIF 182
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 183 WLKKRGLMPGLTFSNELISRDEGL 206
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E +S D+D+ W KL E++FIS+VLAFFAASDGIVN NLVERF+ EV++ EAR FYGF
Sbjct: 43 EEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTYI+D +E+
Sbjct: 103 QMAIENIHSEMYSLLIDTYIRDNDEK 128
>gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase subunit beta [Flavobacterium
psychrophilum JIP02/86]
gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
psychrophilum JIP02/86]
Length = 325
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 115/199 (57%), Gaps = 35/199 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L++N RFVIFPI++ DIW+ YK EASFWTAEE+DLS
Sbjct: 4 VEPILQENKNRFVIFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWNNKLSNDERYFV 63
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K ++ F E A + NE Y F+I + I Y +
Sbjct: 64 KHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 123
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K +E P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SI+WLK
Sbjct: 124 VEKDELFNALEVFPAIKKKADWALQWI--ESDSFAERLIAFAAVEGIFFSGAFCSIYWLK 181
Query: 236 KRGLMPGLTFSNELISRDE 254
KRGLMPGLTFSNELISRDE
Sbjct: 182 KRGLMPGLTFSNELISRDE 200
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Query: 240 MPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQI 298
M ++ E I +DL+ WN KL+ DE+YF+ H+LAFFAASDGIVNENL E F EVQ
Sbjct: 32 MEASFWTAEEIDLSQDLNDWNNKLSNDERYFVKHILAFFAASDGIVNENLAENFVNEVQY 91
Query: 299 TEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 92 AEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEK 126
>gi|366992756|ref|XP_003676143.1| hypothetical protein NCAS_0D02000 [Naumovozyma castellii CBS 4309]
gi|342302009|emb|CCC69781.1| hypothetical protein NCAS_0D02000 [Naumovozyma castellii CBS 4309]
Length = 399
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 120/208 (57%), Gaps = 35/208 (16%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------- 133
++E + EPLL + R +FPI+Y +IW+ YK+AEASFWTAEE+DLSK +
Sbjct: 69 LKETEQQEPLLNADEDRHTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWNNRMNP 128
Query: 134 ------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKK 175
+ N + + E + +R Y F+I + Y +
Sbjct: 129 NERFFISRVLAFFAASDGIVNENLVENFSAEVQVPEAR-AFYGFQIMIENIHSETYSLLI 187
Query: 176 GGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
I K IET+P +K+KA+WALRWI D + F ER++AFA++EGIFFSGSF
Sbjct: 188 DTYIKDPKESEFLFNAIETIPQIKEKAEWALRWINDAEALFAERLVAFAAIEGIFFSGSF 247
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
ASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 248 ASIFWLKKRGLMPGLTFSNELICRDEGL 275
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQ+ EAR FYG
Sbjct: 111 EEIDLSKDLHDWNNRMNPNERFFISRVLAFFAASDGIVNENLVENFSAEVQVPEARAFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|365984697|ref|XP_003669181.1| hypothetical protein NDAI_0C02780 [Naumovozyma dairenensis CBS 421]
gi|343767949|emb|CCD23938.1| hypothetical protein NDAI_0C02780 [Naumovozyma dairenensis CBS 421]
Length = 399
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 117/201 (58%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL + R +FPI+Y +IW+ YK+AEASFWTAEE+DLSK +
Sbjct: 76 EPLLTYDNDRHTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWNNRMNANERFFIS 135
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + + E + +R Y F+I + Y + I
Sbjct: 136 RVLAFFAASDGIVNENLVENFSAEVQIPEAR-AFYGFQIMIENIHSETYSLLIDTYIKDP 194
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+P +K+KA+WALRWI D S FGER++AFA++EGIFFSGSFASIFWLK
Sbjct: 195 KESEFLFNAIETIPQIKEKAEWALRWINDSESPFGERLVAFAAIEGIFFSGSFASIFWLK 254
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELI RDE L
Sbjct: 255 KRGLMPGLTFSNELICRDEGL 275
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EAR FYG
Sbjct: 111 EEIDLSKDLHDWNNRMNANERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEARAFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
14237]
gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
14237]
Length = 326
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 116/200 (58%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L++N RFVIFPIQ+ D+W+ YKK EA WTAEE+DLS K
Sbjct: 5 EPILQENKDRFVIFPIQHNDLWEWYKKQEACIWTAEEIDLSEDANDWNNKLNDDERYFIK 64
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + NE Y F+I + I Y +
Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 124
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + IE P +KKKADWAL+WI ++ SF ER+IAFA+VEGIFFSGSF SIFWLKK
Sbjct: 125 EKTVLFQAIENFPAIKKKADWALKWI--DSPSFAERLIAFAAVEGIFFSGSFCSIFWLKK 182
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE +
Sbjct: 183 RGLMPGLTFSNELISRDEGM 202
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I ED + WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKKQ---EACIWTAEEIDLSEDANDWNNKLNDDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 85 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEKEK 126
>gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
6260]
gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 122/214 (57%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS---------------------- 120
++E + EPLL +N RRFV+FPI+Y +IWKMYKKAEAS
Sbjct: 84 LKEMEKEEPLLMENTRRFVMFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWNNRLND 143
Query: 121 -----------FWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
F+ A + +++ +V NF ++ E K Y F+I +
Sbjct: 144 NERYFISRILAFFAASDGIVNENLVENFSAE-VQIPEAKCF------YGFQIMMENIHSE 196
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K IE +PC+KKKADWALRWI D+ + FGER++AFA+VEGI
Sbjct: 197 TYSLLIDTYIKDPKEADFLFNAIENIPCIKKKADWALRWINDDDALFGERLVAFAAVEGI 256
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGL+FSNELI RDE L
Sbjct: 257 FFSGSFASIFWLKKRGLMPGLSFSNELICRDEGL 290
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN +L +E+YFIS +LAFFAASDGIVNENLVE F+ EVQI EA+CFYG
Sbjct: 126 EEIDLGKDMHDWNNRLNDNERYFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYG 185
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 186 FQIMMENIHSETYSLLIDTYIKDPKE 211
>gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
algicida OT-1]
gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
algicida OT-1]
Length = 326
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 117/198 (59%), Gaps = 35/198 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L++N RFVIFPI++ DIW+ YKK+EASFWTAEE+DL K
Sbjct: 6 EPILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTTKLNDDERYFIK 65
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + NE Y F+I + I Y +
Sbjct: 66 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEA 125
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K K IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SI+WLKK
Sbjct: 126 EKDKLFKAIENFPAIKKKADWALQWI--ESPSFAERLIAFAAVEGIFFSGAFCSIYWLKK 183
Query: 237 RGLMPGLTFSNELISRDE 254
RG+MPGLTFSNELISRDE
Sbjct: 184 RGIMPGLTFSNELISRDE 201
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL+ W KL DE+YFI H+LAFFAASDGIVNENL E F EVQ +EA+ FYG
Sbjct: 41 EEIDLHQDLTDWTTKLNDDERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYG 100
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 101 FQIMMENIHSETYSLLIDTYVKDEAEK 127
>gi|422933569|ref|YP_007003693.1| ribonucleotide reductase subunit 2 [Cyprinid herpesvirus 1]
gi|386685975|gb|AFJ20328.1| ribonucleotide reductase subunit 2 [Cyprinid herpesvirus 1]
Length = 340
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 118/218 (54%), Gaps = 53/218 (24%)
Query: 80 SAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------ 133
++PV V EPLL + ++ + I Y DIW MYKKA ASFWT EEVDL K V
Sbjct: 14 TSPV---VVEEPLLTPSLEKYTLNRIDYPDIWGMYKKALASFWTVEEVDLGKDVQGWNAL 70
Query: 134 ---------------------------------VTNFEIRALKTGEEKASHSRNEPY--L 158
V FE RA + + +E Y L
Sbjct: 71 THNERHFLKHVLAFFAASDGIVNENLLERFSTEVQVFEARAFYGFQIAIENVHSEMYAKL 130
Query: 159 FRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
+A G C+ + IETMPC+KKKADWAL WI+D+ +SFGER+ AFA+
Sbjct: 131 LTTYVADAGECKKLFR---------AIETMPCIKKKADWALSWISDKNASFGERLTAFAA 181
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLK+RG+MPGL FSN LISRDE L
Sbjct: 182 VEGIFFSGSFAAIFWLKQRGVMPGLCFSNVLISRDEGL 219
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 68/85 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN LT +E++F+ HVLAFFAASDGIVNENL+ERF+ EVQ+ EAR FYGF
Sbjct: 56 EEVDLGKDVQGWNALTHNERHFLKHVLAFFAASDGIVNENLLERFSTEVQVFEARAFYGF 115
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEE 332
QIA+ENVHSEMY+ L+ TY+ D E
Sbjct: 116 QIAIENVHSEMYAKLLTTYVADAGE 140
>gi|339898226|ref|XP_003392500.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania infantum JPCM5]
gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania infantum JPCM5]
Length = 392
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 68 NAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERH 127
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R + K E +A Y F++ + Y V
Sbjct: 128 FIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 181
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 182 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 240
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 241 FCALFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 107 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 167 QLMMENIHSETYSVLLDTYITDSEEK 192
>gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 394
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 141/244 (57%), Gaps = 41/244 (16%)
Query: 50 QNTLKDLTNNLQQSKLSDSPIKDKSTL---KQVSAPVQENVETEPLLRDNPRRFVIFPIQ 106
NT +D +LQ LS++ + K+ + K ++E + EPLL ++ R ++ PI+
Sbjct: 29 HNTERDFQLDLQ---LSEAALSHKAFMMNHKVQRHKLKEMEKNEPLLNEDKNRLIMHPIR 85
Query: 107 YQDIWKMYKKAEASFWTAEEVDLSKVVV-------TN---FEIRALK---TGEEKASHSR 153
Y DI++ YKKAEASFWTAEE+DLSK + +N F R L + + +
Sbjct: 86 YPDIYEAYKKAEASFWTAEEIDLSKDLSDWNDKLNSNERFFISRVLAFFAASDGIVNENL 145
Query: 154 NEPYLFRIKLAPGGICRYKVKKGGKITGGKT---------------------IETMPCVK 192
E + +K+ P C Y + + +T I+ +P +K
Sbjct: 146 TENFSVEVKV-PEARCFYGFQIMIENIHSETYSLLIDTYIKDPKESDFLFNAIDYIPQIK 204
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI ++ + FGER++AFAS+EG+FFSGSFASIFWLKKRGLMPGLTFSNELI R
Sbjct: 205 EKAEWALRWINNDEALFGERLVAFASIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICR 264
Query: 253 DEDL 256
DE L
Sbjct: 265 DEGL 268
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DLS WN KL +E++FIS VLAFFAASDGIVNENL E F+ EV++ EARCFYG
Sbjct: 104 EEIDLSKDLSDWNDKLNSNERFFISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYG 163
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 164 FQIMIENIHSETYSLLIDTYIKDPKE 189
>gi|154337607|ref|XP_001565036.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 392
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 68 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVALNDGERH 127
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+VV N R + K E +A Y F++ + Y V
Sbjct: 128 FIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 181
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 182 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 240
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 241 FCALFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 107 EEIDLGNDMKDWVALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 167 QLMMENIHSETYSVLLDTYITDSEEK 192
>gi|399033617|ref|ZP_10732239.1| ribonucleotide reductase, beta subunit [Flavobacterium sp. CF136]
gi|398068052|gb|EJL59513.1| ribonucleotide reductase, beta subunit [Flavobacterium sp. CF136]
Length = 325
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 116/200 (58%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFVIFPI++ DIW+ YKK EASFWTAEE+DL
Sbjct: 3 QVEPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNNKLSDEERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + NE Y F+I + I Y
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K +E P +KKKA+WAL+WI E+ SF ER+IAFA+VEGIFFSG+F SI+WL
Sbjct: 123 EAEKAELFNALEVFPAIKKKAEWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIYWL 180
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 181 KKRGLMPGLTFSNELISRDE 200
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DL+ WN KL+ +E+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLTDWNNKLSDEERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 85 FVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEK 126
>gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 326
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 117/202 (57%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ EPLL RFV+FPIQ++D+W+MYKKAE+SFWT EEV L K +
Sbjct: 6 KIEPLLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWKKLNPKEKHFI 65
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E K ++ Y F+I + Y + +
Sbjct: 66 SNVLAFFAASDGIVNLNLVERFSSEVKMLEAKL-FYGFQIAIENIHSEMYSLLIDTYVRD 124
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
G+ ++T+P VK KADWA++WI D+ S F R++AFA VEGIFFSGSFASIFWL
Sbjct: 125 GEQKKFLFNAVKTIPSVKDKADWAIKWIEDKNSDFATRLVAFACVEGIFFSGSFASIFWL 184
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 185 KKRGLMPGLTFSNELISRDEGL 206
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+D+ W KL EK+FIS+VLAFFAASDGIVN NLVERF+ EV++ EA+ FYGF
Sbjct: 43 EEVLLDKDIEDWKKLNPKEKHFISNVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTY++D E++
Sbjct: 103 QIAIENIHSEMYSLLIDTYVRDGEQK 128
>gi|389593521|ref|XP_003722014.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania major strain Friedlin]
gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania major strain Friedlin]
Length = 388
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 64 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERH 123
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R + K E +A Y F++ + Y V
Sbjct: 124 FIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 177
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 178 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 236
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 FCALFWLKKRGLMPGLTFSNELISRDEGL 265
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 103 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 162
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 163 QLMMENIHSETYSVLLDTYITDSEEK 188
>gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae]
Length = 365
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 132/242 (54%), Gaps = 39/242 (16%)
Query: 50 QNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENV--ETEPLLRDNPRRFVIFPIQY 107
QN K+ Q S I+D L ++S + N EPLL+D RFVIFP+++
Sbjct: 7 QNVEKENAEPAQHQHQSKKKIQD---LTKLSIEPKGNALDADEPLLQDLDNRFVIFPLRH 63
Query: 108 QDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRA 141
+IW+ YKKA ASFWT EEVDL K + + N +
Sbjct: 64 HEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRVLAFFAASDGIVNENLCE 123
Query: 142 LKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKGGKITGGKTIETMPCVKKK 194
+ E K S +R Y F+I ++ I Y + ++ I +KKK
Sbjct: 124 RFSNEVKVSEARF-FYGFQIAIENIHSEMYSKLIETYIRDEKERMKLFNAIFEFEFIKKK 182
Query: 195 ADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
ADWALRWI+D +SF ER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGLT SNELISRDE
Sbjct: 183 ADWALRWISDTKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDE 242
Query: 255 DL 256
L
Sbjct: 243 GL 244
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W K+ DE+YFIS VLAFFAASDGIVNENL ERF+ EV+++EAR FYGF
Sbjct: 81 EEVDLGKDMNDWEKMNGDEQYFISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGF 140
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYS LI+TYI+D++ER
Sbjct: 141 QIAIENIHSEMYSKLIETYIRDEKER 166
>gi|146090970|ref|XP_001466408.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania infantum JPCM5]
gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania infantum JPCM5]
Length = 388
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 64 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERH 123
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R + K E +A Y F++ + Y V
Sbjct: 124 FIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 177
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 178 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 236
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 FCALFWLKKRGLMPGLTFSNELISRDEGL 265
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 103 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 162
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 163 QLMMENIHSETYSVLLDTYITDSEEK 188
>gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain
[Schizosaccharomyces japonicus yFS275]
gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain
[Schizosaccharomyces japonicus yFS275]
Length = 392
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 118/205 (57%), Gaps = 35/205 (17%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------- 133
+E+ + E +L NPRRFV+FPI+Y DIW+ YKKAEASFWTAEE+DLSK +
Sbjct: 62 KEDEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHDWDNKLNKD 121
Query: 134 -----------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKG 176
+ N + + + E + + +R Y F+I + Y +
Sbjct: 122 ERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARC-VYGFQIMIENIHSETYSLLLD 180
Query: 177 GKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I I TM +K KA WALRWI D S + R++AFA+VEGIFFSGSFA
Sbjct: 181 TYIRDPYEKQRHFDAILTMGSIKAKAKWALRWIEDPESIYAVRLVAFAAVEGIFFSGSFA 240
Query: 230 SIFWLKKRGLMPGLTFSNELISRDE 254
SIFWLKKRGLMPGLTFSNELI RDE
Sbjct: 241 SIFWLKKRGLMPGLTFSNELICRDE 265
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL +DE+YFIS VLA+FAASDGIVNENL+ RF+ EVQI EARC YG
Sbjct: 103 EEIDLSKDLHDWDNKLNKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYG 162
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLL+DTYI+D E+
Sbjct: 163 FQIMIENIHSETYSLLLDTYIRDPYEK 189
>gi|157869457|ref|XP_001683280.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania major strain Friedlin]
gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania major strain Friedlin]
Length = 392
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 68 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERH 127
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R + K E +A Y F++ + Y V
Sbjct: 128 FIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 181
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 182 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 240
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 241 FCALFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 107 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 167 QLMMENIHSETYSVLLDTYITDSEEK 192
>gi|440475735|gb|ELQ44398.1| ribonucleoside-diphosphate reductase subunit M2 B [Magnaporthe
oryzae Y34]
gi|440486447|gb|ELQ66310.1| ribonucleoside-diphosphate reductase subunit M2 B [Magnaporthe
oryzae P131]
Length = 403
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 125/218 (57%), Gaps = 43/218 (19%)
Query: 73 KSTLKQVSAPVQENVET-EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
K K AP + E EP+L++NP+RFV W+MYKKAEASFWTAEE+DLSK
Sbjct: 56 KPVEKPAVAPTIKAFEMDEPILQENPQRFV---------WQMYKKAEASFWTAEEIDLSK 106
Query: 132 VV------VTNFE---IRALKTGEEKASHSRNEPYLFRIKLA---PGGICRYK------- 172
+ +T+ E I + + NE + R P C Y
Sbjct: 107 DLHDWNNKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMEN 166
Query: 173 ---------VKKGGKITGGKT-----IETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
+ K T +T I+T+PC++KKADWALRWI D+ S+F R+IAFA
Sbjct: 167 IHSETYSLLIDTYIKETAQRTYLFNAIDTIPCIRKKADWALRWITDKKSTFATRLIAFAV 226
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 227 VEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 264
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN KLT DEKYFISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 100 EEIDLSKDLHDWNNKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYG 159
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 160 FQIMMENIHSETYSLLIDTYIKETAQR 186
>gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-3C]
gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-3C]
Length = 328
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 117/201 (58%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L +NP RFVIFPI++ D+W+ YKK EA FWTAEE+DLS
Sbjct: 5 VEPILTENPDRFVIFPIKHDDLWEWYKKCEACFWTAEEIDLSEDLNDWNNKLNEDERYFV 64
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K ++ F E A + +E Y F+I + I Y +
Sbjct: 65 KHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 124
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K K +E P +K+KADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLK
Sbjct: 125 KEKNKLFKALENFPAIKEKADWALKWI--ESPSFAERLIAFAAVEGIFFSGAFCSIFWLK 182
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 183 KRGLMPGLTFSNELISRDEGM 203
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I EDL+ WN KL DE+YF+ H+LAFFAASDGIVNENL E F EVQ EA+ FYG
Sbjct: 41 EEIDLSEDLNDWNNKLNEDERYFVKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYG 100
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 101 FQIMMENIHSETYSLLIDTYVKDEKEK 127
>gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei]
gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei]
Length = 377
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 119/201 (59%), Gaps = 34/201 (16%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------------- 133
EPLL+D RFVIFP+++ +IW+ YKKA ASFWT EEVDL K +
Sbjct: 57 NEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFIS 116
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKK 175
+ N + + E K S +R Y F+I ++ I Y +
Sbjct: 117 RVLAFFAASDGIVNENLCERFSNEVKVSEARF-FYGFQIAIENIHSEMYSKLIETYIRDE 175
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
++T I +KKKADWA++WI+D+ +SF ER+IAFA+VEGIFFSGSFASIFWLK
Sbjct: 176 KERLTLFNAIFEFEFIKKKADWAMKWISDKKASFAERLIAFAAVEGIFFSGSFASIFWLK 235
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLT SNELISRDE L
Sbjct: 236 KRGLMPGLTHSNELISRDEGL 256
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W K+ DE+YFIS VLAFFAASDGIVNENL ERF+ EV+++EAR FYGF
Sbjct: 93 EEVDLGKDMNDWEKMNGDEQYFISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGF 152
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYS LI+TYI+D++ER
Sbjct: 153 QIAIENIHSEMYSKLIETYIRDEKER 178
>gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
sp. BAL39]
gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
sp. BAL39]
Length = 324
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 117/205 (57%), Gaps = 46/205 (22%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
E E LL++N RFV+ PI+Y +IW+MYKK+EASFWTAEE+DLS
Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHWDNLNDGERHFI 62
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKT------ 184
++ F E A + +E L P C Y + + +T
Sbjct: 63 SHILAFFSASDGIVNENLAVNFMSEVQL------PEARCFYGFQIMMENIHSETYALLID 116
Query: 185 ---------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
IET+PCVKKKA+WALRWI + +F ER++AFA+VEGIFFSGSF
Sbjct: 117 TYIKDPEEKDRLFHAIETVPCVKKKAEWALRWI--DNGNFAERLVAFAAVEGIFFSGSFC 174
Query: 230 SIFWLKKRGLMPGLTFSNELISRDE 254
SIFWLKKRGLMPGLTFSNELISRDE
Sbjct: 175 SIFWLKKRGLMPGLTFSNELISRDE 199
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D HW+ L E++FISH+LAFF+ASDGIVNENL F EVQ+ EARCFYGF
Sbjct: 40 EEIDLSDDQKHWDNLNDGERHFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE Y+LLIDTYIKD EE+
Sbjct: 100 QIMMENIHSETYALLIDTYIKDPEEK 125
>gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis]
Length = 345
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 21 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERH 80
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R + K E +A Y F++ + Y V
Sbjct: 81 FIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 134
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 135 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 193
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 194 FCALFWLKKRGLMPGLTFSNELISRDEGL 222
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 60 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 120 QLMMENIHSETYSVLLDTYITDSEEK 145
>gi|403214437|emb|CCK68938.1| hypothetical protein KNAG_0B05040 [Kazachstania naganishii CBS
8797]
Length = 395
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 119/207 (57%), Gaps = 33/207 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
++E + EP++ + R +FPI+Y +IW+ YK+AEASFWTAEE+DLSK
Sbjct: 65 LKETEKEEPIMVGDKNRHTVFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWNVRMNP 124
Query: 132 -------VVVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKG 176
V+ F E E S N P Y F+I + Y +
Sbjct: 125 NEKFFISRVLAFFAASDGLVNENLVENFSAEVNIPEAKAFYGFQIMIENIHSETYSLLID 184
Query: 177 GKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I K IET+P +K+KA+WALRWI D S F ER++AFA++EG+FFSGSFA
Sbjct: 185 TYIKDPKESEFLFNAIETIPQIKEKAEWALRWIGDSESVFAERLVAFAAIEGVFFSGSFA 244
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 245 SIFWLKKRGLMPGLTFSNELICRDEGL 271
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +EK+FIS VLAFFAASDG+VNENLVE F+ EV I EA+ FYG
Sbjct: 107 EEIDLSKDLHDWNVRMNPNEKFFISRVLAFFAASDGLVNENLVENFSAEVNIPEAKAFYG 166
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 167 FQIMIENIHSETYSLLIDTYIKDPKE 192
>gi|401424595|ref|XP_003876783.1| ribonucleoside-diphosphate reductase small chain,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 388
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 64 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAALNDGERH 123
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+VV N R + K E +A Y F++ + Y V
Sbjct: 124 FIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 177
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC+++KA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 178 LDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 236
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 FCALFWLKKRGLMPGLTFSNELISRDEGL 265
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 103 EEIDLGNDMKDWAALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGF 162
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 163 QLMMENIHSETYSVLLDTYITDSEEK 188
>gi|401422190|ref|XP_003875583.1| ribonucleoside-diphosphate reductase small chain,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 392
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 134/255 (52%), Gaps = 46/255 (18%)
Query: 41 EPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQ-ENVETEPLLRDNPRR 99
E ++ P + D+++ L P+ + + V + N E EPL ++NP R
Sbjct: 22 EAETDVARPSSEAADVSSPSAAEDLVMKPVAPGAEVLPVDKVAEGTNAEEEPLQQENPFR 81
Query: 100 FVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------------------- 131
+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 82 YVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAALNDGERHFIKHVLAFFAGSDG 141
Query: 132 VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK----- 183
+VV N R + K E +A Y F++ + Y V IT +
Sbjct: 142 IVVENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVLLDTYITDSEEKLRL 195
Query: 184 --TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMP 241
I+T+PC+++KA+WA+RWI AS F ER+I FA+VEGIFFSGSF ++FWLKKRGLMP
Sbjct: 196 LHAIQTIPCIQRKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGSFCALFWLKKRGLMP 254
Query: 242 GLTFSNELISRDEDL 256
GLTFSNELISRDE L
Sbjct: 255 GLTFSNELISRDEGL 269
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 107 EEIDLGNDMKDWAALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGF 166
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 167 QLMMENIHSETYSVLLDTYITDSEEK 192
>gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia]
Length = 355
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 119/215 (55%), Gaps = 33/215 (15%)
Query: 74 STLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--- 130
S ++ + +N EPLL+ NP RFV+FPI+Y DIW MYK+ +ASFWTAEE+DL
Sbjct: 21 SNVQASQTVLNQNYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLYQDL 80
Query: 131 --------------KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGI 168
K V+ F E A E Y F+I +
Sbjct: 81 KDWEKLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIAMENIHS 140
Query: 169 CRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEG 221
Y + IT I+ +P ++KKA WA++WI +E SF ER+IAFA+VEG
Sbjct: 141 ETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWI-NENDSFAERLIAFAAVEG 199
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
IFFSGSF +IFW+KKR LMPGLTFSNELISRDE L
Sbjct: 200 IFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGL 234
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W KLT DEK+FI +VLAFFAASDGIVNENL ++F EVQ+ EARCFYGF
Sbjct: 72 EEIDLYQDLKDWEKLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGF 131
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYI D+ E+
Sbjct: 132 QIAMENIHSETYSLLIDTYITDENEK 157
>gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
Length = 354
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 118/209 (56%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 30 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAALNDGERH 89
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+VV N R + K E +A Y F++ + Y V
Sbjct: 90 FIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 143
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC+++KA+WA+RWI AS F ER+I FA+VEGIFFSGS
Sbjct: 144 LDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGSSAS-FQERLIGFAAVEGIFFSGS 202
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 203 FCALFWLKKRGLMPGLTFSNELISRDEGL 231
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 69 EEIDLGNDMKDWAALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGF 128
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 129 QLMMENIHSETYSVLLDTYITDSEEK 154
>gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 338
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 119/203 (58%), Gaps = 40/203 (19%)
Query: 90 EPLL-RDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EP+L RF +FPI+Y DIW+MYKKAEASFWTAEEVDLS
Sbjct: 14 EPILDAAGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWEKLSDDEKHFIS 73
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N +R + GE + +R Y F+I + Y + I
Sbjct: 74 HILAFFAASDGIVLENLGVRFM--GEVQIPEARA-FYGFQIAIENIHSEMYSLLIDAYIK 130
Query: 181 GG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ +E +PCV KKADWAL+WI + +++F ER+IAFA +EGIFFSGSF SI+W
Sbjct: 131 DAAQKKYLFEAMENIPCVAKKADWALKWI-ESSATFAERLIAFACIEGIFFSGSFCSIYW 189
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRG+MPGLTFSNELISRDE L
Sbjct: 190 LKKRGMMPGLTFSNELISRDEGL 212
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 70/88 (79%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW KL+ DEK+FISH+LAFFAASDGIV ENL RF EVQI EAR FY
Sbjct: 48 TAEEVDLSDDMKHWEKLSDDEKHFISHILAFFAASDGIVLENLGVRFMGEVQIPEARAFY 107
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLLID YIKD ++
Sbjct: 108 GFQIAIENIHSEMYSLLIDAYIKDAAQK 135
>gi|408491217|ref|YP_006867586.1| ribonucleotide reductase of class Ia (aerobic), beta subunit NrdF
[Psychroflexus torquis ATCC 700755]
gi|408468492|gb|AFU68836.1| ribonucleotide reductase of class Ia (aerobic), beta subunit NrdF
[Psychroflexus torquis ATCC 700755]
Length = 326
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 111/200 (55%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L +N RFV+FPI + DIW+ YKK EASFWTAEE+DL
Sbjct: 3 QIEPILEENKNRFVLFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKTKLSKDEQYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVK 174
K ++ F E A + NE K G I Y
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K K IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWL
Sbjct: 123 DKEKDLLFKAIENFPAIKKKADWALQWI--ESDSFAERLIAFAAVEGIFFSGAFCSIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 181 KKRGLMPGLTFSNELISRDE 200
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D++ W KL++DE+YFI H+LAFFAASDGIVNENL E F EVQ TEA+ FYG
Sbjct: 40 EEIDLQQDITDWKTKLSKDEQYFIKHILAFFAASDGIVNENLAENFVNEVQYTEAKFFYG 99
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLLIDTY+ D +E+
Sbjct: 100 FQIMVENIHSETYSLLIDTYVDDDKEK 126
>gi|338209704|ref|YP_004653751.1| ribonucleoside-diphosphate reductase [Runella slithyformis DSM
19594]
gi|336303517|gb|AEI46619.1| Ribonucleoside-diphosphate reductase [Runella slithyformis DSM
19594]
Length = 331
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 116/202 (57%), Gaps = 40/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++P RFV+FPI++ DIW+ YK EA+FWTAEE+DL+
Sbjct: 10 EPLLVEDPHRFVLFPIKHHDIWQFYKNHEAAFWTAEEIDLASDMQDWDKLNDGERHFISH 69
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+V N + LK + + Y F+I + Y + I
Sbjct: 70 VLAFFAASDGIVNENLAVNFLKEVQYAEAKCF---YGFQIAMENIHSETYSLLIDTYIKD 126
Query: 182 G-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ IET+PCV+KKA+WALRWI + +F ER+IAFA+VEGIFFSGSF SIFWL
Sbjct: 127 PVEKDRMLRAIETIPCVQKKAEWALRWIGN--GTFAERLIAFAAVEGIFFSGSFCSIFWL 184
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLM GL+FSNELISRDE L
Sbjct: 185 KKRGLMKGLSFSNELISRDEGL 206
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W+KL E++FISHVLAFFAASDGIVNENL F +EVQ EA+CFYGF
Sbjct: 45 EEIDLASDMQDWDKLNDGERHFISHVLAFFAASDGIVNENLAVNFLKEVQYAEAKCFYGF 104
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIKD E+
Sbjct: 105 QIAMENIHSETYSLLIDTYIKDPVEK 130
>gi|406025255|ref|YP_006705556.1| ribonucleoside-diphosphate reductase subunit M2 [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
gi|404432854|emb|CCM10136.1| Ribonucleoside-diphosphate reductase subunit M2 [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
Length = 331
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 116/199 (58%), Gaps = 34/199 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLL++N RFV+FPI++QDIW YK+AEASFWTAEE+DLS+
Sbjct: 9 EPLLQENKNRFVLFPIEHQDIWGFYKQAEASFWTAEEIDLSQDIKDWENLISGEKHFITH 68
Query: 133 VVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK- 183
V+ F E + NE Y F+I + Y + + K
Sbjct: 69 VLAFFAASDGIVNENLVQNFANEVQYTEAKFFYGFQIAIENIHSEAYSLLIDTYVKDPKE 128
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IET+ V KKADWALRWI+ SF ER+IAFA+VEGIFFSGSF +IFWLKKR
Sbjct: 129 RHRLFNAIETIEWVGKKADWALRWISK--GSFPERLIAFAAVEGIFFSGSFCAIFWLKKR 186
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 187 GLMPGLTFSNELISRDEGL 205
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D+ W L EK+FI+HVLAFFAASDGIVNENLV+ F EVQ TEA+ FYGF
Sbjct: 44 EEIDLSQDIKDWENLISGEKHFITHVLAFFAASDGIVNENLVQNFANEVQYTEAKFFYGF 103
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLIDTY+KD +ER
Sbjct: 104 QIAIENIHSEAYSLLIDTYVKDPKER 129
>gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 346
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 115/203 (56%), Gaps = 39/203 (19%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EPLLRDNP RF +FPI++ +W+MYKKAEASFWTAEEVDL+
Sbjct: 26 AEPLLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWITLNDNEQHFIS 85
Query: 131 ----------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + + S Y F++ + Y + I
Sbjct: 86 HVLAFFAASDGIVLENLCSRFMTDVQLPEARSF---YGFQLAIENIHSEMYSLLLDTYIK 142
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K I T+P V KKADWAL+WI +AS F ER++ FA VEGIFFSGSF +IFW
Sbjct: 143 DPKKKSDLFRAIHTVPTVAKKADWALKWIGSDAS-FAERLVGFACVEGIFFSGSFCAIFW 201
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLM GLTFSNELISRDE L
Sbjct: 202 LKKRGLMRGLTFSNELISRDEGL 224
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 64/79 (81%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D W L +E++FISHVLAFFAASDGIV ENL RF +VQ+ EAR FYGFQ+A+EN+
Sbjct: 69 DYRDWITLNDNEQHFISHVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENI 128
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL+DTYIKD +++
Sbjct: 129 HSEMYSLLLDTYIKDPKKK 147
>gi|399925484|ref|ZP_10782842.1| ribonucleoside-diphosphate reductase small chain [Myroides
injenensis M09-0166]
Length = 325
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 114/198 (57%), Gaps = 35/198 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L +N RFVIFPI++ DIW YKK EASFWTAEE+DL K
Sbjct: 5 EPILTENKNRFVIFPIKHHDIWDWYKKMEASFWTAEEIDLHQDLSDWNNKLNEDERYFIK 64
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + NE Y F+I + I Y +
Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKNEE 124
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + I+ P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLKK
Sbjct: 125 EKDKLFRAIDVFPAIKKKADWALKWI--ESESFAERLIAFAAVEGIFFSGAFCSIFWLKK 182
Query: 237 RGLMPGLTFSNELISRDE 254
RGLMPGLTFSNELISRDE
Sbjct: 183 RGLMPGLTFSNELISRDE 200
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DLS WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLSDWNNKLNEDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+K++EE+
Sbjct: 85 FVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKNEEEK 126
>gi|401826656|ref|XP_003887421.1| ribonucleoside-diphosphate reductase [Encephalitozoon hellem ATCC
50504]
gi|395459939|gb|AFM98440.1| ribonucleoside-diphosphate reductase [Encephalitozoon hellem ATCC
50504]
Length = 324
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 113/204 (55%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EPLL RFV+FPI+Y DIWK+YKKAE+SFWT EEV L K +
Sbjct: 4 EVEPLLNPEEERFVLFPIKYIDIWKLYKKAESSFWTVEEVTLDKDIEDWGKLNAGEKHFI 63
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR---------YK 172
+ N + + E K ++ + + ++A I Y
Sbjct: 64 SHVLAFFAASDGIVNLNLLERFSNEVKILEAK---FFYGFQMAIENIHSEMYSLLIDTYI 120
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K I+ +P V KADWA+RWI D+ SSF R++AFA VEGIFFSG+FASIF
Sbjct: 121 KDAAEKDFLFNAIKNIPSVGDKADWAIRWIEDKDSSFATRLVAFACVEGIFFSGAFASIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGL 204
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E ++ D+D+ W KL EK+FISHVLAFFAASDGIVN NL+ERF+ EV+I EA+ FYGF
Sbjct: 41 EEVTLDKDIEDWGKLNAGEKHFISHVLAFFAASDGIVNLNLLERFSNEVKILEAKFFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTYIKD E+
Sbjct: 101 QMAIENIHSEMYSLLIDTYIKDAAEK 126
>gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
donghaensis MED134]
Length = 328
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 119/199 (59%), Gaps = 35/199 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV------TNFEIRAL 142
EP+L +N RFVIFPIQ+ DIW+ YKK+EASFWTAEE+DL + +V T+ E +
Sbjct: 4 VEPILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWKGKLTDDERYFI 63
Query: 143 K------------TGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K E A + NE Y F+I + I Y +
Sbjct: 64 KHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 123
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K +E P +KKKADWAL+WI ++ SF ER+IAFA+VEGIFFSG+F SI+WLK
Sbjct: 124 VEKDKLFNALENFPAIKKKADWALKWI--DSPSFAERLIAFAAVEGIFFSGAFCSIYWLK 181
Query: 236 KRGLMPGLTFSNELISRDE 254
KRGLMPGLTFSNELISRDE
Sbjct: 182 KRGLMPGLTFSNELISRDE 200
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W KLT DE+YFI H+LAFFAASDGIVNENL E F EVQ +EA+ FYG
Sbjct: 40 EEIDLHQDLVDWKGKLTDDERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYG 99
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 100 FQIMMENIHSETYSLLIDTYVKDEVEK 126
>gi|431797145|ref|YP_007224049.1| ribonucleotide reductase subunit beta [Echinicola vietnamensis DSM
17526]
gi|430787910|gb|AGA78039.1| ribonucleotide reductase, beta subunit [Echinicola vietnamensis DSM
17526]
Length = 327
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 116/202 (57%), Gaps = 35/202 (17%)
Query: 88 ETEPLL-RDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
+TEP+L + + RFV+FPIQ+ DIW+ YKKAEASFWTAEE+DL +
Sbjct: 3 KTEPILEQGDNSRFVLFPIQHDDIWEFYKKAEASFWTAEEIDLGQDMKDWKNLSDDERHF 62
Query: 132 --VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITG 181
V+ F E A H E Y F+I + Y + I
Sbjct: 63 ISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKE 122
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K IE + CVKKKADWALRWI + F ER+IAFA+VEGIFFSGSF SIFWL
Sbjct: 123 PKERDRLFNAIEHLDCVKKKADWALRWI--DEGDFQERLIAFAAVEGIFFSGSFCSIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 181 KKRGLMPGLTFSNELISRDEGL 202
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D+ W L+ DE++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 41 EEIDLGQDMKDWKNLSDDERHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIK+ +ER
Sbjct: 101 QIAMENIHSETYSLLIDTYIKEPKER 126
>gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum
PN500]
Length = 323
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 121/203 (59%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------------KV 132
++ EP+L++N RFV+FPI++QD+WK YKKAEASFWTAEE+DL+ +
Sbjct: 2 MQEEPILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQDKLNDNERY 61
Query: 133 VVTN----FEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKV 173
++N F E A+ +E Y F+I + I Y
Sbjct: 62 FISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTYIQ 121
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IET+PCV+KKA+WAL+WI++ ++SF ER++AFA+VEGIFFSGSF SIFW
Sbjct: 122 NPAEKTKLFNAIETIPCVQKKANWALKWISN-STSFAERLVAFAAVEGIFFSGSFCSIFW 180
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKR LM GL SNE ISRDE L
Sbjct: 181 LKKRNLMSGLCSSNEFISRDEGL 203
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I DL W +KL +E+YFIS+VLAFFAASDGIVNENL RF EVQI EARCFYG
Sbjct: 40 EEIDLAPDLRDWQDKLNDNERYFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYG 99
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIAMEN+HSE YSLLIDTYI++ E+
Sbjct: 100 FQIAMENIHSETYSLLIDTYIQNPAEK 126
>gi|384251981|gb|EIE25458.1| ribonucleotide reductase [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 121/211 (57%), Gaps = 42/211 (19%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------- 131
PVQ + EPLL +NP RF +FPI+Y +W+MYKKAEASFWTAEEVDLS
Sbjct: 3 GPVQHH---EPLLAENPDRFCMFPIKYSAVWEMYKKAEASFWTAEEVDLSSDYTDWMKLS 59
Query: 132 -------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYK 172
+V+ N R + E + +R Y F+I + Y
Sbjct: 60 SDEKHFVSHILAFFASSDGIVLENLSQRFM--SEIQIPEAR-AFYGFQIAIENIHSEMYS 116
Query: 173 VKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
+ I K +ET+P VK+KA+WAL+W+ + SSF ER++A+ VEGIFFS
Sbjct: 117 LLLETYIKDPKEKHRLFHAMETVPAVKRKAEWALKWVGSQ-SSFAERLVAWGCVEGIFFS 175
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GSF SIFWLKKRGLM GLTFSNELISRDE L
Sbjct: 176 GSFCSIFWLKKRGLMHGLTFSNELISRDEGL 206
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D + W KL+ DEK+F+SH+LAFFA+SDGIV ENL +RF E+QI EAR FYGF
Sbjct: 44 EEVDLSSDYTDWMKLSSDEKHFVSHILAFFASSDGIVLENLSQRFMSEIQIPEARAFYGF 103
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++TYIKD +E+
Sbjct: 104 QIAIENIHSEMYSLLLETYIKDPKEK 129
>gi|396081544|gb|AFN83160.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
romaleae SJ-2008]
Length = 326
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 113/202 (55%), Gaps = 34/202 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
E EPLL RFV+FPI+Y DIW +YKKAE+SFWT EEV L K V
Sbjct: 6 EIEPLLNPEEERFVLFPIKYDDIWALYKKAESSFWTVEEVSLDKDVEDWGRLNAKEKHFI 65
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + + E K +R Y F++ + Y + I
Sbjct: 66 SHVLAFFAASDGIVNLNLVERFSSEVKILEARF-FYGFQVAIESIHSEMYSLLIETYIRN 124
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ I+ +P VK KADWA++WI D+ S F R++AFA VEGIFFSG+FASIFWL
Sbjct: 125 AEERDFLFNAIKNIPSVKDKADWAIKWIEDKDSDFATRLVAFACVEGIFFSGAFASIFWL 184
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 185 KKRGLMPGLTFSNELISRDEGL 206
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E +S D+D+ W +L EK+FISHVLAFFAASDGIVN NLVERF+ EV+I EAR FYGF
Sbjct: 43 EEVSLDKDVEDWGRLNAKEKHFISHVLAFFAASDGIVNLNLVERFSSEVKILEARFFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+E++HSEMYSLLI+TYI++ EER
Sbjct: 103 QVAIESIHSEMYSLLIETYIRNAEER 128
>gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 399
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 132/237 (55%), Gaps = 36/237 (15%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSK------------------VVVTNFEIRALKTGEEKASHSRN 154
YK+AEASFWTAEE+DLSK V+ F E +
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDSIVNENLVENFST 158
Query: 155 EP--------YLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMPCVKKKADWAL 199
E Y F+I + Y + I K E T+P + +KA+WAL
Sbjct: 159 EVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWAL 218
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
RWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI RDE L
Sbjct: 219 RWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGL 275
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASD IVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain, partial [Ascaris
suum]
Length = 376
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 127/229 (55%), Gaps = 36/229 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVE--TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
+KL + I + ST ++ + E EPLL +NP RFVIFPI+Y DIW YK+A AS
Sbjct: 28 NKLMNVSISENSTTRKAPEVTDKGDEEVVEPLLANNPNRFVIFPIKYHDIWDFYKRAVAS 87
Query: 121 FWTAEEVD------------------LSKVV--------VTNFEIRALKTGEEKASHSRN 154
FWT EEVD +S+V+ + N + E + +R
Sbjct: 88 FWTVEEVDLSKDYQHWENLSDGERFFISRVLAFFAASDGIVNENLVERFAQEVQVPEARF 147
Query: 155 EPYLFRI-------KLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEAS 207
Y F+I ++ + Y + I +KKKADWAL+WIAD+ +
Sbjct: 148 -FYGFQIMIENIHSEMYSKMVETYIRDDNERKKLFNAINEFEFIKKKADWALKWIADKQA 206
Query: 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ ER+IAFA+VEGIFFSGSFA+IFWLKKRGLMPGLT SNELISRDE L
Sbjct: 207 PYAERLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGL 255
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D HW L+ E++FIS VLAFFAASDGIVNENLVERF QEVQ+ EAR FYGF
Sbjct: 92 EEVDLSKDYQHWENLSDGERFFISRVLAFFAASDGIVNENLVERFAQEVQVPEARFFYGF 151
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +EN+HSEMYS +++TYI+D ER
Sbjct: 152 QIMIENIHSEMYSKMVETYIRDDNER 177
>gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118]
gi|365764844|gb|EHN06363.1| Rnr2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 399
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 135/244 (55%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMPCVK 192
++ E K+ Y F+I + Y + I K E T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|428182355|gb|EKX51216.1| hypothetical protein GUITHDRAFT_66373 [Guillardia theta CCMP2712]
Length = 327
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 114/207 (55%), Gaps = 47/207 (22%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EPLL NP RFV+FPI+Y +W+MYKK EASFWT EEVDLS+
Sbjct: 2 AEPLLTPNPNRFVLFPIKYHAVWEMYKKHEASFWTVEEVDLSQDMIHWEKLNDNEKHFIK 61
Query: 132 -----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
+V+ N E R + + +E Y L
Sbjct: 62 HVLAFFAASDGIVLENLAGNFSTEIQIPEARCFYGFQIAMENIHSEMY----SLLIDTYV 117
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
R V+K + IET+P V KKADWA+RW+ E SF +R++AFA+VEGIFFSGSF
Sbjct: 118 RDPVEKDKLF---RAIETVPAVMKKADWAIRWMG-EKCSFAKRLVAFAAVEGIFFSGSFC 173
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGL FSNELISRDE L
Sbjct: 174 AIFWLKKRGLMPGLCFSNELISRDEGL 200
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW KL +EK+FI HVLAFFAASDGIV ENL F+ E+QI EARCFYGF
Sbjct: 38 EEVDLSQDMIHWEKLNDNEKHFIKHVLAFFAASDGIVLENLAGNFSTEIQIPEARCFYGF 97
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTY++D E+
Sbjct: 98 QIAMENIHSEMYSLLIDTYVRDPVEK 123
>gi|412991446|emb|CCO16291.1| Ribonucleoside-diphosphate reductase small chain, putative
[Bathycoccus prasinos]
Length = 330
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 122/211 (57%), Gaps = 40/211 (18%)
Query: 82 PVQENVETEPLLRDNPR-RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------- 131
P E EPLL D RFV+FP++Y +W+MYKKA+ASFWTAEEVDL
Sbjct: 2 PSDEQQLAEPLLDDGGNDRFVLFPLKYDAVWEMYKKAQASFWTAEEVDLQDDMKHWEKLT 61
Query: 132 -------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAP 165
+V+ N +R +K E + +R Y F+I ++
Sbjct: 62 ADEKHFISHVLAFFAASDGIVLENLGVRFMK--EIQIPEARA-FYGFQIAIENIHSEMYS 118
Query: 166 GGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
I +Y K ++T+PCV+KKA WAL+WI D + SF ER++AFA VEGIFFS
Sbjct: 119 LLIDQYIKDPVEKTRLFNAVDTIPCVQKKAQWALKWI-DGSESFAERLVAFACVEGIFFS 177
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GSF SI+WLKKRG+MPGLTFSNELISRDE L
Sbjct: 178 GSFCSIYWLKKRGMMPGLTFSNELISRDEGL 208
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 71/88 (80%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW KLT DEK+FISHVLAFFAASDGIV ENL RF +E+QI EAR FY
Sbjct: 44 TAEEVDLQDDMKHWEKLTADEKHFISHVLAFFAASDGIVLENLGVRFMKEIQIPEARAFY 103
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLLID YIKD E+
Sbjct: 104 GFQIAIENIHSEMYSLLIDQYIKDPVEK 131
>gi|365961083|ref|YP_004942650.1| ribonucleoside-diphosphate reductase [Flavobacterium columnare ATCC
49512]
gi|365737764|gb|AEW86857.1| ribonucleoside-diphosphate reductase [Flavobacterium columnare ATCC
49512]
Length = 325
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 114/198 (57%), Gaps = 35/198 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L++N RFVIFPI++ DIW+ YKK EASFWTAEE+DL K
Sbjct: 5 EPILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNTKLSEDEKYFIK 64
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG- 182
++ F E A + NE Y F+I + Y + +
Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKDDV 124
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IE P +KKKA+WALRWI+ + SF ER+IAFA+VEGIFFSG+F SI+WLKK
Sbjct: 125 EKDQLFHAIEVFPAIKKKAEWALRWIS--SDSFAERLIAFAAVEGIFFSGAFCSIYWLKK 182
Query: 237 RGLMPGLTFSNELISRDE 254
RGLMPGLTFSNELISRDE
Sbjct: 183 RGLMPGLTFSNELISRDE 200
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 74/102 (72%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DL+ WN KL+ DEKYFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLTDWNTKLSEDEKYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD E+
Sbjct: 85 FVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKDDVEK 126
>gi|449017028|dbj|BAM80430.1| ribonucleoside-diphosphate reductase beta chain [Cyanidioschyzon
merolae strain 10D]
Length = 484
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 122/204 (59%), Gaps = 39/204 (19%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
++EPLL + RFV+FPI+Y + W YK+A ASFWT EEVDL +
Sbjct: 160 KSEPLLMASTNRFVLFPIRYPETWSFYKRAVASFWTVEEVDLQQDLRDWSRLTSGEKHFI 219
Query: 132 ------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV------ 173
+V N +R + E + S +R+ Y+F++ + Y +
Sbjct: 220 TYVLAFFAASDGIVNENLALRF--STEVQLSEARS-FYMFQMAMENIHSEMYSLLIDTFI 276
Query: 174 -KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ K + I+T+PCV++KA+WALRW+ +AS F ER+IAFA+VEGIFFSGSF +IF
Sbjct: 277 KETTEKDRLFRAIDTLPCVRRKAEWALRWVGSDAS-FAERLIAFAAVEGIFFSGSFCAIF 335
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 336 WLKKRGLMPGLTFSNELISRDEGL 359
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W++LT EK+FI++VLAFFAASDGIVNENL RF+ EVQ++EAR FY F
Sbjct: 197 EEVDLQQDLRDWSRLTSGEKHFITYVLAFFAASDGIVNENLALRFSTEVQLSEARSFYMF 256
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+AMEN+HSEMYSLLIDT+IK+ E+
Sbjct: 257 QMAMENIHSEMYSLLIDTFIKETTEK 282
>gi|374724341|gb|EHR76421.1| ribonucleoside-diphosphate reductase beta chain [uncultured marine
group II euryarchaeote]
Length = 348
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 116/199 (58%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L++N RFV+FPIQ+ DIW+MYK+ A FWTAEE+DL+ K
Sbjct: 25 EPMLQENLDRFVLFPIQHSDIWEMYKQQMACFWTAEEIDLAEDLKDWKNLNADEQHFLKH 84
Query: 133 VVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG-- 182
++ F E + NE Y F+I + Y + I
Sbjct: 85 ILAFFAASDGIVNENLGINFSNEVCWPEARAFYGFQIMMENIHAETYSLLIDTYIKDEPE 144
Query: 183 -----KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K +ET+P VK+K +WA+RW++ + SF ER++AFA+VEGIFFSGSF +IFWLKKR
Sbjct: 145 KDHLFKALETVPSVKRKGEWAMRWLSRKQGSFAERLVAFAAVEGIFFSGSFCAIFWLKKR 204
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 205 GLMPGLTFSNELISRDEGL 223
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 64/86 (74%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I EDL W L DE++F+ H+LAFFAASDGIVNENL F+ EV EAR FYGF
Sbjct: 60 EEIDLAEDLKDWKNLNADEQHFLKHILAFFAASDGIVNENLGINFSNEVCWPEARAFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+H+E YSLLIDTYIKD+ E+
Sbjct: 120 QIMMENIHAETYSLLIDTYIKDEPEK 145
>gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 120/202 (59%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
E LL++NP R+V+FPI+Y IW+MYKK EASFWTAEE+DLS+
Sbjct: 15 EDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWENLSDNDRHFISH 74
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+V+ N + A +GE + +R Y F+I + Y + I
Sbjct: 75 VLAFFAASDGIVLEN--LSAKFSGEVQCPEAR-AFYGFQIAMENIHSETYSLLIDNYIKD 131
Query: 182 G-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ IET+P V+KKA+WAL WI D+ + F ER+IAFA VEGI FSGSF +I+WL
Sbjct: 132 PEQKDKIFRAIETVPSVRKKAEWALSWINDD-NCFAERLIAFACVEGILFSGSFCAIYWL 190
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 191 KKRGLMPGLTFSNELISRDEGL 212
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L+ ++++FISHVLAFFAASDGIV ENL +F+ EVQ EAR FYGF
Sbjct: 50 EEIDLSQDLRDWENLSDNDRHFISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGF 109
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLID YIKD E++
Sbjct: 110 QIAMENIHSETYSLLIDNYIKDPEQK 135
>gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789]
gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a]
gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291]
gi|349579170|dbj|GAA24333.1| K7_Rnr2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 399
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 135/244 (55%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMPCVK 192
++ E K+ Y F+I + Y + I K E T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c]
gi|1172946|sp|P09938.2|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1;
AltName: Full=Ribonucleotide reductase R2 subunit 1;
AltName: Full=Ribonucleotide reductase small subunit 1
gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces
cerevisiae]
gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae]
gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c]
gi|392298407|gb|EIW09504.1| Rnr2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 399
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 135/244 (55%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMPCVK 192
++ E K+ Y F+I + Y + I K E T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 120/202 (59%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
E LL++NP R+V+FPI+Y IW+MYKK EASFWTAEE+DLS+
Sbjct: 15 EDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWENLSDNDRHFISH 74
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVK 174
+V+ N + A +GE + +R Y F+I + I Y
Sbjct: 75 VLAFFAASDGIVLEN--LSAKFSGEVQCPEAR-AFYGFQIAMENIHSETYSLLIDNYIKD 131
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K + IET+P V+KKA+WAL WI D+ + F ER+IAFA VEGI FSGSF +I+WL
Sbjct: 132 PAEKDKIFRAIETVPSVRKKAEWALSWINDD-NCFSERLIAFACVEGILFSGSFCAIYWL 190
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 191 KKRGLMPGLTFSNELISRDEGL 212
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L+ ++++FISHVLAFFAASDGIV ENL +F+ EVQ EAR FYGF
Sbjct: 50 EEIDLSQDLRDWENLSDNDRHFISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGF 109
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLID YIKD E+
Sbjct: 110 QIAMENIHSETYSLLIDNYIKDPAEK 135
>gi|401625096|gb|EJS43121.1| rnr2p [Saccharomyces arboricola H-6]
Length = 399
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 121/214 (56%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------- 133
++E + EPLL ++ R V+FPI+Y +IW+ YK+AEASFWTAEE+DLSK +
Sbjct: 69 LKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNE 128
Query: 134 ------------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
V NF ++ E K+ Y F+I +
Sbjct: 129 NERFFISRVLAFFAASDGIVNENLVENFSTE-VQVPEAKSF------YGFQIMIENIHSE 181
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K I T+P + +KA+WALRWI D + FGER++AFAS+EG+
Sbjct: 182 TYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGV 241
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRG+MPGLTFSNELI RDE L
Sbjct: 242 FFSGSFASIFWLKKRGMMPGLTFSNELICRDEGL 275
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQ+ EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQVPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|386783699|gb|AFJ24744.1| ribonucleoside diphosphate reductase subunit M2-2 [Schmidtea
mediterranea]
Length = 321
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 118/205 (57%), Gaps = 44/205 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
E LL ++ R IQY+DIW+M+ KA +SFWT EV+LSK
Sbjct: 2 EILLTEDKSRIGFLNIQYEDIWEMFNKARSSFWTVNEVNLSKDFAHWKKMNDDERYFITH 61
Query: 132 ----------VVVTNFE---IRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V N I+ +K E +A +S F+I + Y +
Sbjct: 62 VLAFFAASDGIVNENLVERFIQEVKIPEAEAFYS------FQIAIENIHSEMYSLLIDSY 115
Query: 179 ITGGKT-------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
+T +T IETMPCV+KKA WALRWI+D+ S+FG RV+AFA+VEGIFFSGSFASI
Sbjct: 116 VTDTETKNKLFNAIETMPCVQKKAQWALRWISDKKSTFGTRVVAFAAVEGIFFSGSFASI 175
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGL FSNELISRDE L
Sbjct: 176 FWLKKRGLMPGLCFSNELISRDEGL 200
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 70/84 (83%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
++ +D +HW K+ DE+YFI+HVLAFFAASDGIVNENLVERF QEV+I EA FY FQI
Sbjct: 39 VNLSKDFAHWKKMNDDERYFITHVLAFFAASDGIVNENLVERFIQEVKIPEAEAFYSFQI 98
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
A+EN+HSEMYSLLID+Y+ D E +
Sbjct: 99 AIENIHSEMYSLLIDSYVTDTETK 122
>gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis]
gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 115/199 (57%), Gaps = 35/199 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L++N RFVIFPI++ DIW+ YKK EASFWTAEE+DL
Sbjct: 4 VEPILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNTKLNEDEKYFI 63
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K ++ F E A + NE Y F+I + I Y +
Sbjct: 64 KHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 123
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IE P +K+KA+WAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLK
Sbjct: 124 VEKDKLFHAIEVFPAIKRKAEWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIFWLK 181
Query: 236 KRGLMPGLTFSNELISRDE 254
KRGLMPGLTFSNELISRDE
Sbjct: 182 KRGLMPGLTFSNELISRDE 200
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 74/102 (72%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +D++ WN KL DEKYFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDITDWNTKLNEDEKYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 85 FVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEK 126
>gi|372209392|ref|ZP_09497194.1| ribonucleoside-diphosphate reductase small chain [Flavobacteriaceae
bacterium S85]
Length = 323
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 117/202 (57%), Gaps = 35/202 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L+++P RFVIFPI++QDIW+ YKK EAS WTAEE+DL
Sbjct: 3 QVEPILQEDPNRFVIFPIKHQDIWEWYKKQEASIWTAEEIDLHQDISDWENKLNDDERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + E Y F+I + I Y
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVTEVQYAEAKFFYGFQIMMENIHSEVYSLLIDTYVKN 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K K IE P +K KADWAL+WI E+ SF ER+IAFA+VEGIFFSGSF +IFW+
Sbjct: 123 EEEKNKLFKAIEHFPAIKLKADWALKWI--ESESFAERLIAFAAVEGIFFSGSFCAIFWM 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGL+PGLTFSNELISRDE L
Sbjct: 181 KKRGLLPGLTFSNELISRDEGL 202
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I +D+S W NKL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKKQ---EASIWTAEEIDLHQDISDWENKLNDDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE+YSLLIDTY+K++EE+
Sbjct: 85 FVTEVQYAEAKFFYGFQIMMENIHSEVYSLLIDTYVKNEEEK 126
>gi|347535523|ref|YP_004842948.1| ribonucleoside-diphosphate reductase subunit beta [Flavobacterium
branchiophilum FL-15]
gi|345528681|emb|CCB68711.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
branchiophilum FL-15]
Length = 325
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 118/199 (59%), Gaps = 35/199 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT-NFEIR------- 140
EP+L++N RFVIFPI++ DIW MYK EASFWTAEE+DLS+ + NF++
Sbjct: 4 VEPILQENKNRFVIFPIKHHDIWNMYKSMEASFWTAEEIDLSQDLTDWNFKLNNEERYFI 63
Query: 141 -------ALKTG---EEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
A G E A + NE Y F+I + I Y +
Sbjct: 64 KHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 123
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K ++ P +KKKADWAL+WI + SF ER+IAFA+VEGIFFSG+F +I+WLK
Sbjct: 124 IEKDELFHALDVFPAIKKKADWALKWIT--SDSFAERLIAFAAVEGIFFSGAFCAIYWLK 181
Query: 236 KRGLMPGLTFSNELISRDE 254
KRGLMPGLT+SNELISRDE
Sbjct: 182 KRGLMPGLTYSNELISRDE 200
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Query: 240 MPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQI 298
M ++ E I +DL+ WN KL +E+YFI H+LAFFAASDGIVNENL E F EVQ
Sbjct: 32 MEASFWTAEEIDLSQDLTDWNFKLNNEERYFIKHILAFFAASDGIVNENLAENFVNEVQY 91
Query: 299 TEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 92 AEAKFFYGFQIMMENIHSETYSLLIDTYVKDEIEK 126
>gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13]
Length = 296
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 135/244 (55%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMPCVK 192
++ E K+ Y F+I + Y + I K E T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796]
Length = 306
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 135/244 (55%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMPCVK 192
++ E K+ Y F+I + Y + I K E T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa]
gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 121/212 (57%), Gaps = 39/212 (18%)
Query: 80 SAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------- 131
S ++E + EP+L++ +RF +FPI+Y+++W+MYKKAEASFWTAEEVDLS+
Sbjct: 10 SERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWEAL 69
Query: 132 --------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+V+ N R L + + + Y F+I + Y
Sbjct: 70 SDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARA---FYGFQIAMENIHSEMY 126
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I + IE +PCV +KA WAL WI + F ER++AFA +EGIFF
Sbjct: 127 SLLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWI-QSSMVFAERLVAFACIEGIFF 185
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSF +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 186 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 217
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 67/88 (76%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + D+ W L+ EK+FISHVLAFFAASDGIV ENL RF +VQI EAR FY
Sbjct: 53 TAEEVDLSRDMQQWEALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFY 112
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLL++TYIKD E+
Sbjct: 113 GFQIAMENIHSEMYSLLLETYIKDSREK 140
>gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
70294]
gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
70294]
Length = 400
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 121/214 (56%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL------------- 129
++E EPLL +P R ++FPIQY DI++ YK+AEASFWTAEE+DL
Sbjct: 68 LKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWNNRMNE 127
Query: 130 ------SKVVV--------------TNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
S+V+ NF + A + E K Y F+I +
Sbjct: 128 NERFFISRVLAFFAASDGIVNENLTENFSVEA-QILEAKCF------YGFQIMIENIHSE 180
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K IET+P +K+KA+WALRWI D + F ER++AFA++EG+
Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWINDSEALFAERLVAFAAIEGV 240
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 241 FFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 274
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAAS 280
I F + I+ KR ++ E I +DL WN ++ +E++FIS VLAFFAAS
Sbjct: 86 ILFPIQYPDIYEAYKRA--EASFWTAEEIDLSKDLHDWNNRMNENERFFISRVLAFFAAS 143
Query: 281 DGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEE 332
DGIVNENL E F+ E QI EA+CFYGFQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 144 DGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSETYSLLIDTYIKDPKE 195
>gi|408673955|ref|YP_006873703.1| ribonucleotide reductase [Emticicia oligotrophica DSM 17448]
gi|387855579|gb|AFK03676.1| ribonucleotide reductase [Emticicia oligotrophica DSM 17448]
Length = 328
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 122/208 (58%), Gaps = 42/208 (20%)
Query: 85 ENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKT 144
E ++ EPLL ++ RFV+FPI++ DIW+ YKK EASFWTAEE+DLS + + L
Sbjct: 5 ELLQVEPLLIEDKTRFVLFPIKHNDIWEFYKKHEASFWTAEEIDLSPDLQ---DWAKLSD 61
Query: 145 GEEK-ASHSR----------NEP----YLFRIKLAPGGICRYKVKKGGKITGGKT----- 184
GE SH NE ++ R++ A C Y + + +T
Sbjct: 62 GERHFISHVLAFFAASDGIVNENLAVNFISRVQFAEAK-CFYGFQIMMENIHSETYSLLI 120
Query: 185 ----------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
I+ +PCVKKKADWAL+WI E +F +R++AFA VEGIFFSGSF
Sbjct: 121 DTYIKDAVERDKMLNAIDHIPCVKKKADWALKWI--EQGNFIDRLLAFAVVEGIFFSGSF 178
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 179 CSIFWLKKRGLMPGLTFSNELISRDEGL 206
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 64/86 (74%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL W KL+ E++FISHVLAFFAASDGIVNENL F VQ EA+CFYGF
Sbjct: 45 EEIDLSPDLQDWAKLSDGERHFISHVLAFFAASDGIVNENLAVNFISRVQFAEAKCFYGF 104
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE YSLLIDTYIKD ER
Sbjct: 105 QIMMENIHSETYSLLIDTYIKDAVER 130
>gi|443242947|ref|YP_007376172.1| ribonucleoside-diphosphate reductase small chain [Nonlabens
dokdonensis DSW-6]
gi|442800346|gb|AGC76151.1| ribonucleoside-diphosphate reductase small chain [Nonlabens
dokdonensis DSW-6]
Length = 330
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 114/200 (57%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L++NP RFVIFPIQ+ D+W+ YKK +A WTAEE+DL K
Sbjct: 6 EPILQENPNRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDLTDWQNSLNSDERYFIK 65
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + NE Y F+I + I Y
Sbjct: 66 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDK 125
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K K IE P +K KADWA++WI E+ SF ER+IAFA+VEGIFFSG+F SI+WLKK
Sbjct: 126 EKDQLFKAIENFPAIKLKADWAMKWI--ESPSFAERLIAFAAVEGIFFSGAFCSIYWLKK 183
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE +
Sbjct: 184 RGLMPGLTFSNELISRDEGM 203
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 73/102 (71%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I DL+ W N L DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 29 WYKKQ---QACIWTAEEIDLQVDLTDWQNSLNSDERYFIKHILAFFAASDGIVNENLAEN 85
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD +E+
Sbjct: 86 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDKEK 127
>gi|367014807|ref|XP_003681903.1| hypothetical protein TDEL_0E04490 [Torulaspora delbrueckii]
gi|359749564|emb|CCE92692.1| hypothetical protein TDEL_0E04490 [Torulaspora delbrueckii]
Length = 399
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 135/232 (58%), Gaps = 38/232 (16%)
Query: 62 QSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAE 118
Q +LS++ + + LK QV ++E + EPLL +N RRFV+FPI+Y +IW+ YK+AE
Sbjct: 43 QLRLSNAAKEHSNFLKSHQVHRHKLKEMEKDEPLLVENKRRFVLFPIKYHEIWQAYKRAE 102
Query: 119 ASFWTAEEVD-------------------LSKVV--------VTNFEIRALKTGEEKASH 151
ASFWTAEE+D +S+V+ + N + + E +
Sbjct: 103 ASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPE 162
Query: 152 SRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIAD 204
++ Y F+I + Y + I K IE +P +K+KA+WA+RWI D
Sbjct: 163 AKC-FYGFQIMMENIHSETYSLLIDTYIKDPKESDFLFNAIENIPQIKEKAEWAIRWIQD 221
Query: 205 EASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
S F ER++AFA++EG FFSGSFA+IFWLKK+GLMPGLTFSNELI RDE L
Sbjct: 222 SESIFAERLVAFAAIEGYFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGL 273
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+CFYG
Sbjct: 109 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYG 168
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 169 FQIMMENIHSETYSLLIDTYIKDPKE 194
>gi|344303170|gb|EGW33444.1| hypothetical protein SPAPADRAFT_50323 [Spathaspora passalidarum
NRRL Y-27907]
Length = 419
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 122/214 (57%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS---------------------- 120
++E EPLL++N RRFV+FPI+Y +IW+MYKKAEAS
Sbjct: 87 LREQESEEPLLKENSRRFVMFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLND 146
Query: 121 -----------FWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
F+ A + +++ +V NF ++ E KA Y F+I +
Sbjct: 147 NERYFISRVLAFFAASDGLVNENLVENFSAE-VQIPEAKAF------YGFQIMIEMIHSE 199
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + + + I T+PC+ KKADWAL+WIAD + + ER++AFA++EGI
Sbjct: 200 VYSLLIDTYVKDPQEAEFLFDAIHTIPCIAKKADWALKWIADTDALYAERLVAFAAIEGI 259
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 260 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 293
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L +E+YFIS VLAFFAASDG+VNENLVE F+ EVQI EA+ FYG
Sbjct: 129 EEIDLSKDLHDWNNRLNDNERYFISRVLAFFAASDGLVNENLVENFSAEVQIPEAKAFYG 188
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +E +HSE+YSLLIDTY+KD +E
Sbjct: 189 FQIMIEMIHSEVYSLLIDTYVKDPQE 214
>gi|395802146|ref|ZP_10481399.1| ribonucleoside-diphosphate reductase [Flavobacterium sp. F52]
gi|395435387|gb|EJG01328.1| ribonucleoside-diphosphate reductase [Flavobacterium sp. F52]
Length = 325
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 114/200 (57%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFVIFPI++ DIW+ YKK EASFWTAEE+DL
Sbjct: 3 QVEPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNNKLNDDERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + NE Y F+I + I Y
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K +E P + KK +WAL+WI E+ SF ER+IAFA+VEGIFFSG+F SI+WL
Sbjct: 123 EAEKTELFNALEVFPAIAKKGEWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIYWL 180
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 181 KKRGLMPGLTFSNELISRDE 200
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 74/102 (72%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DL+ WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLTDWNNKLNDDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 85 FVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEK 126
>gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
Length = 342
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 116/201 (57%), Gaps = 39/201 (19%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------- 131
P+L++ +RF +FPI+Y+ +W+MYKKAEASFWTAEEVDLS+
Sbjct: 21 PILKEQNQRFCMFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWETLSVSEKHFISHV 80
Query: 132 ---------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+V+ N R L + + + Y F+I + Y + I
Sbjct: 81 LAFFAASDGIVLENLAARFLNDIQVPEARAF---YGFQIAMENIHSEMYSLLLETYIKDS 137
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IET+PCV +KA WAL WI +S + ER++AFA VEGIFFSGSF +IFWLK
Sbjct: 138 REKNRLFNAIETIPCVARKAKWALDWI-HSSSLYAERLVAFACVEGIFFSGSFCAIFWLK 196
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE L
Sbjct: 197 KRGLMPGLTFSNELISRDEGL 217
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ W L+ EK+FISHVLAFFAASDGIV ENL RF ++Q+ EAR FYGF
Sbjct: 55 EEVDLSQDVQQWETLSVSEKHFISHVLAFFAASDGIVLENLAARFLNDIQVPEARAFYGF 114
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLL++TYIKD E+
Sbjct: 115 QIAMENIHSEMYSLLLETYIKDSREK 140
>gi|340059497|emb|CCC53882.1| putative ribonucleoside-diphosphate reductase small chain,
fragment, partial [Trypanosoma vivax Y486]
Length = 323
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 125/222 (56%), Gaps = 39/222 (17%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
++ EPLL NP R+VIFPI+Y DIW+ YK+AE+S WT EE+DLS
Sbjct: 1 LQPEPLLLPNPDRYVIFPIKYHDIWRKYKEAESSIWTVEEIDLSNDLADWKKIDDNERHF 60
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V+ N R + E + +R Y F+I + Y V
Sbjct: 61 IKHVLAFFAASDGIVLENLAQRFM--AEVQIPEARC-FYGFQIAIENVHAETYSVLLDTY 117
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I + I T+P +KKKA+WA++WI + +SF ER++AFA+VEGIFFSGSF ++
Sbjct: 118 ILDPDEKNHLLRAIFTIPSIKKKAEWAIQWI-ESTASFAERLVAFAAVEGIFFSGSFCAL 176
Query: 232 FWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
FWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 177 FWLKKRGLMPGLTFSNELISRDEGLHTEFACLLYEKYIVNRL 218
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL+ W K+ +E++FI HVLAFFAASDGIV ENL +RF EVQI EARCFYGF
Sbjct: 39 EEIDLSNDLADWKKIDDNERHFIKHVLAFFAASDGIVLENLAQRFMAEVQIPEARCFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVH+E YS+L+DTYI D +E+
Sbjct: 99 QIAIENVHAETYSVLLDTYILDPDEK 124
>gi|373108817|ref|ZP_09523098.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CCUG 10230]
gi|423129513|ref|ZP_17117188.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CCUG 12901]
gi|423133178|ref|ZP_17120825.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CIP 101113]
gi|423328773|ref|ZP_17306580.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CCUG 3837]
gi|371646062|gb|EHO11579.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CCUG 10230]
gi|371648563|gb|EHO14051.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CCUG 12901]
gi|371649234|gb|EHO14715.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CIP 101113]
gi|404604335|gb|EKB03969.1| ribonucleoside-diphosphate reductase small chain [Myroides
odoratimimus CCUG 3837]
Length = 325
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 113/198 (57%), Gaps = 35/198 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L +N RFVIFPI++ DIW YKK EASFWTAEE+DL K
Sbjct: 5 EPILTENKNRFVIFPIKHHDIWDWYKKMEASFWTAEEIDLHQDLSDWNNKLNEDERYFIK 64
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + NE Y F+I + I Y +
Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKNEE 124
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + IE P + KKA+WAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLKK
Sbjct: 125 EKDRLFRAIEVFPAIMKKAEWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIFWLKK 182
Query: 237 RGLMPGLTFSNELISRDE 254
RGLMPGLTFSNELISRDE
Sbjct: 183 RGLMPGLTFSNELISRDE 200
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DLS WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLSDWNNKLNEDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+K++EE+
Sbjct: 85 FVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKNEEEK 126
>gi|370703011|ref|YP_004956813.1| orf65 gene product [Helicoverpa zea nudivirus 2]
gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1]
gi|365199608|gb|AEW69614.1| ribonuclease reductase [Helicoverpa zea nudivirus 2]
Length = 333
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 118/207 (57%), Gaps = 35/207 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALK 143
Q + +E L + RF +FPI+Y DIW+MYKKA+ASFWT EEVDLSK + ++E R +
Sbjct: 4 QTSCISEFNLEEPSSRFTLFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLY-DWETRLTE 62
Query: 144 TGEEKASHSR----------NEPYLFRIK---LAPGGICRYKVK---------------- 174
T E SH N+ L R P C Y +
Sbjct: 63 TEREFISHILAFFAGSDGIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLID 122
Query: 175 -----KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
K I+T+P ++KKA W +RWI D+ SS+ +R++AFA+VEGIFFSGSFA
Sbjct: 123 MYIRDPQRKHMLFNAIDTVPSIRKKAQWVIRWIDDDKSSYADRLVAFAAVEGIFFSGSFA 182
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLT SNE ISRDE L
Sbjct: 183 AIFWLKKRGLMPGLTHSNEFISRDEGL 209
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +DL W +LT E+ FISH+LAFFA SDGIVN+NL+ RF+QE+ I E CFYG
Sbjct: 45 EEVDLSKDLYDWETRLTETEREFISHILAFFAGSDGIVNDNLLTRFSQELTIPEVSCFYG 104
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +ENVHSEMYS LID YI+D + +
Sbjct: 105 FQIMIENVHSEMYSTLIDMYIRDPQRK 131
>gi|375148687|ref|YP_005011128.1| ribonucleoside-diphosphate reductase [Niastella koreensis GR20-10]
gi|361062733|gb|AEW01725.1| Ribonucleoside-diphosphate reductase [Niastella koreensis GR20-10]
Length = 323
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 121/205 (59%), Gaps = 42/205 (20%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE 147
E E LL++N RFVI PI+Y IW+MYKK EASFWTAEE+DLS + + +L GE
Sbjct: 4 ENEVLLQENKDRFVILPIKYPTIWEMYKKHEASFWTAEEIDLSGDLK---DWASLNDGER 60
Query: 148 K-ASHSR----------NEP----YLFRIKLAPGGICRYKVKKGGKITGGKT-------- 184
SH NE ++ ++L P C Y + + +T
Sbjct: 61 HFISHVLAFFAASDGIVNENLAVNFMSEVQL-PEARCFYGFQIMMENIHSETYALLIDTY 119
Query: 185 -------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I+T+P VKKKA+WALRWI E +F ER++AFA+VEGIFFSGSF SI
Sbjct: 120 VKDVNEKDRLFHAIDTVPAVKKKAEWALRWI--EQGNFAERLVAFAAVEGIFFSGSFCSI 177
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FW+KKRGLMPGLTFSNELISRDE L
Sbjct: 178 FWMKKRGLMPGLTFSNELISRDEGL 202
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 64/86 (74%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL W L E++FISHVLAFFAASDGIVNENL F EVQ+ EARCFYGF
Sbjct: 41 EEIDLSGDLKDWASLNDGERHFISHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE Y+LLIDTY+KD E+
Sbjct: 101 QIMMENIHSETYALLIDTYVKDVNEK 126
>gi|3914644|sp|O46310.1|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
AltName: Full=Ribonucleotide reductase M2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
Length = 345
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 117/209 (55%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 21 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERH 80
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R + K E +A Y F++ + Y V
Sbjct: 81 FIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 134
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+W +RWI AS F +R+I FA+VEGIFFSGS
Sbjct: 135 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGSSAS-FQQRLIGFAAVEGIFFSGS 193
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 194 FCALFWLKKRGLMPGLTFSNELISRDEGL 222
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 60 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 120 QLMMENIHSETYSVLLDTYITDSEEK 145
>gi|383451662|ref|YP_005358383.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
indicum GPTSA100-9]
gi|380503284|emb|CCG54326.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
indicum GPTSA100-9]
Length = 325
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 111/201 (55%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L +N RFVIFPIQ+ DIW +YKK EA FWTAEE+DL
Sbjct: 4 VEPILAENKDRFVIFPIQHHDIWDLYKKQEACFWTAEEIDLHQDITDWSTKLNDDERYFI 63
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKK 175
K ++ F E A + +E K G I Y +
Sbjct: 64 KHILAFFAASDGIVNENLAENFVSEVQYSEAKFFYGFQLMMENIHSETYSLLIDTYVKDE 123
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K K IE P + KKADWAL+WI ++ SF ER+IAFA+VEGIFFSG+F SI+WLK
Sbjct: 124 KEKNILFKAIENFPAIAKKADWALKWI--DSPSFAERLIAFAAVEGIFFSGAFCSIYWLK 181
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 182 KRGLMPGLTFSNELISRDEGM 202
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D++ W+ KL DE+YFI H+LAFFAASDGIVNENL E F EVQ +EA+ FYG
Sbjct: 40 EEIDLHQDITDWSTKLNDDERYFIKHILAFFAASDGIVNENLAENFVSEVQYSEAKFFYG 99
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQ+ MEN+HSE YSLLIDTY+KD++E+
Sbjct: 100 FQLMMENIHSETYSLLIDTYVKDEKEK 126
>gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
bacterium BAL38]
gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
bacterium BAL38]
Length = 325
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 115/201 (57%), Gaps = 35/201 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------ 130
EP+L++N RFVIFPI++QDIW+ YKK EA WTAEE+DL
Sbjct: 4 VEPILQENKDRFVIFPIKHQDIWEWYKKQEACIWTAEEIDLHTDLNDWNNKLNDDEKYFI 63
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKK 175
K ++ F E A + NE Y F+I + I Y +
Sbjct: 64 KHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKDE 123
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET P +K+KA WAL+WI E+ SF ER+IAFA+VEGIFFSGSF SI+WLK
Sbjct: 124 VEKNKLFHAIETFPAIKEKAQWALKWI--ESDSFAERLIAFAAVEGIFFSGSFCSIYWLK 181
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 182 KRGLMPGLTFSNELISRDEGM 202
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 73/102 (71%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I DL+ WN KL DEKYFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKKQ---EACIWTAEEIDLHTDLNDWNNKLNDDEKYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 85 FVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEK 126
>gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
bacterium BBFL7]
gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
bacterium BBFL7]
Length = 330
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 114/200 (57%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L++NP RFVIFPIQ+ D+W+ YKK +A WTAEE+DL K
Sbjct: 6 EPILQENPDRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDITDWQNSLNSDERYFIK 65
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + NE Y F+I + I Y
Sbjct: 66 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDA 125
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + IE P +K KADWA++WI E+ SF ER+IAFA+VEGIFFSG+F SI+WLKK
Sbjct: 126 EKDQLFRAIENFPAIKLKADWAMKWI--ESPSFAERLIAFAAVEGIFFSGAFCSIYWLKK 183
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE +
Sbjct: 184 RGLMPGLTFSNELISRDEGM 203
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 72/102 (70%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I D++ W N L DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 29 WYKKQ---QACIWTAEEIDLQVDITDWQNSLNSDERYFIKHILAFFAASDGIVNENLAEN 85
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD E+
Sbjct: 86 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDAEK 127
>gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
Length = 379
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 34/229 (14%)
Query: 61 QQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
+QS L S + + ++ V EPLL+ +P+R ++PIQY +IW YK+A+AS
Sbjct: 26 KQSGLWSSHVAHQERNRRFVGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQAS 85
Query: 121 FWTAEEVDLSKVV-----VTNFEIRALK-------TGEEKASHSRNEPYLFRIKLAPGGI 168
FWTAEE+DLS + +TN E L + + + + E + +++ P
Sbjct: 86 FWTAEEIDLSHDMMDWSKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQV-PEAR 144
Query: 169 CRYKVKKGGKITGGKT---------------------IETMPCVKKKADWALRWIADEAS 207
C Y + + +T IET+P +++KA+WAL W +D+++
Sbjct: 145 CFYGFQVMIENVHSETYSLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWALTWTSDKST 204
Query: 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+F ER++AFA VEG+FFSGSFA+IFW++KRGL+PGLTFSNELISRDE +
Sbjct: 205 TFAERLVAFAVVEGVFFSGSFAAIFWMRKRGLLPGLTFSNELISRDEGM 253
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W+KLT E++F+S +LAFFA+SDGIVNENLVERF+ EVQ+ EARCFYGF
Sbjct: 90 EEIDLSHDMMDWSKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGF 149
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ +ENVHSE YSLLIDTYIKD EER
Sbjct: 150 QVMIENVHSETYSLLIDTYIKDPEER 175
>gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 399
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 142/258 (55%), Gaps = 53/258 (20%)
Query: 45 NLFLPQNTLKD---LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPR 98
NL TL++ + +++ + KLS K+ LK QV ++E + EPLL ++
Sbjct: 25 NLXKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKE 84
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------------SKVV------ 133
R V+FPI+Y +IW+ YK+AEASFWTAEE+DL S+V+
Sbjct: 85 RTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAAS 144
Query: 134 --------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-- 183
V NF ++ E K+ Y F+I + Y + I K
Sbjct: 145 DGIVNENLVENFSTE-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKES 197
Query: 184 -----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRG 238
I T+P + +KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG
Sbjct: 198 EFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRG 257
Query: 239 LMPGLTFSNELISRDEDL 256
+MPGLTFSNELI RDE L
Sbjct: 258 MMPGLTFSNELICRDEGL 275
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
UW101]
gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
UW101]
Length = 325
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 114/200 (57%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
+ EP+L++N RFVIFPI++ DIW+ YKK EASFWTAEE+DL
Sbjct: 3 QVEPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNNKLNDDERYF 62
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVK 174
K ++ F E A + NE Y F+I + I Y
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K +E P + KK +WAL+WI E+ SF ER+IAFA+VEGIFFSG+F SI+WL
Sbjct: 123 EAEKTELFNALEVFPAIAKKGEWALKWI--ESDSFAERLIAFAAVEGIFFSGAFCSIYWL 180
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 181 KKRGLMPGLTFSNELISRDE 200
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 74/102 (72%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DL+ WN KL DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKK---MEASFWTAEEIDLHQDLTDWNNKLNDDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 85 FVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEK 126
>gi|343084827|ref|YP_004774122.1| ribonucleotide reductase [Cyclobacterium marinum DSM 745]
gi|342353361|gb|AEL25891.1| ribonucleotide reductase [Cyclobacterium marinum DSM 745]
Length = 326
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 118/203 (58%), Gaps = 35/203 (17%)
Query: 87 VETEPLL-RDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
+++EP+L + + RFV+FPIQ+ DIWK YKKAEASFWTAEE+DL +
Sbjct: 1 MKSEPILEQGDNSRFVLFPIQHDDIWKYYKKAEASFWTAEEIDLGQDLNDWKNLSDGERH 60
Query: 132 ---VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKIT 180
V+ F E A H E Y F+I + Y + I
Sbjct: 61 FISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIK 120
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ IE + CVKKKA+WALRWI + +F ER+IAFA+VEGIFFSGSF SIFW
Sbjct: 121 NPEERDHLFNAIEHLDCVKKKAEWALRWI--DKGNFMERLIAFAAVEGIFFSGSFCSIFW 178
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 179 LKKRGLMPGLTFSNELISRDEGL 201
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL+ W L+ E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 40 EEIDLGQDLNDWKNLSDGERHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYIK+ EER
Sbjct: 100 QIAMENIHSETYSLLIDTYIKNPEER 125
>gi|340617898|ref|YP_004736351.1| ribonucleoside-diphosphate reductase, small subunit [Zobellia
galactanivorans]
gi|339732695|emb|CAZ95963.1| Ribonucleoside-diphosphate reductase, small subunit [Zobellia
galactanivorans]
Length = 328
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 114/200 (57%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L +N RFVIFPI++ D+W+ YKK EA FWTAEE+DL K
Sbjct: 6 EPILEENNDRFVIFPIKHHDLWEWYKKCEACFWTAEEIDLHEDQNDWDNKLSEDERYFIK 65
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
++ F E A + +E Y F+I + I Y +
Sbjct: 66 HILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + IE P +KKKADWAL WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLKK
Sbjct: 126 EKALLFRAIENFPAIKKKADWALNWI--ESPSFAERLIAFAAVEGIFFSGAFCSIFWLKK 183
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE +
Sbjct: 184 RGLMPGLTFSNELISRDEGM 203
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 74/102 (72%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK ++ E I ED + W NKL+ DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 29 WYKK---CEACFWTAEEIDLHEDQNDWDNKLSEDERYFIKHILAFFAASDGIVNENLAEN 85
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA+ FYGFQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 86 FVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEKEK 127
>gi|225432510|ref|XP_002279943.1| PREDICTED: ribonucleoside-diphosphate reductase small chain A
[Vitis vinifera]
Length = 340
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 116/204 (56%), Gaps = 33/204 (16%)
Query: 85 ENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEI 139
E E EP+L N +RF +FPI+Y+ +W+MYKKAEASFWTAEEVDLS V ++N E
Sbjct: 14 EEQEEEPILMKNSQRFCMFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWESLSNSEK 73
Query: 140 R---------------ALKTGEEKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKI 179
L+ + H P Y F+I + Y + I
Sbjct: 74 HFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 133
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IE++ CV KA WAL WI ++ F ER+IAFA VEGIFFSGSF +IF
Sbjct: 134 KDSKEKHRLFNAIESISCVAGKAKWALDWI-QSSTLFAERLIAFACVEGIFFSGSFCAIF 192
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 193 WLKKRGLMPGLTFSNELISRDEGL 216
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+ W L+ EK+FISHVLAFFAASDGIV ENL RF ++QI EAR FYGF
Sbjct: 54 EEVDLSHDVQQWESLSNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGF 113
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLL++TYIKD +E+
Sbjct: 114 QIAMENIHSEMYSLLLETYIKDSKEK 139
>gi|325286576|ref|YP_004262366.1| ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
Length = 328
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 113/200 (56%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------K 131
EP+L N RFVIFPI++ D+W YKK EASFWTAEE+DL K
Sbjct: 6 EPILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWKNKLNDDERYFIK 65
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK 183
++ F E A + +E Y F+I + Y + + K
Sbjct: 66 HILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
+E P ++KKADWAL+WI E+ SF ER+IAFA+VEGIFFSGSF SIFWLKK
Sbjct: 126 EKDILFHALENFPAIRKKADWALKWI--ESPSFAERLIAFAAVEGIFFSGSFCSIFWLKK 183
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE +
Sbjct: 184 RGLMPGLTFSNELISRDEGM 203
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I DL W NKL DE+YFI H+LAFFAASDGIVNENL E F EVQ EA+ FYG
Sbjct: 41 EEIDLHADLDDWKNKLNDDERYFIKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYG 100
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTY+KD++E+
Sbjct: 101 FQIMMENIHSETYSLLIDTYVKDEKEK 127
>gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
MED152]
gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
MED152]
Length = 323
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 118/200 (59%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV------TNFEIRALK 143
EP+L+ N RFVIFPIQ+ D+W+ YKK +A FWTAEE+DL +V T+ E +K
Sbjct: 5 EPILQPNDNRFVIFPIQHNDLWEWYKKQQACFWTAEEIDLHSDLVDWTTKLTDDERYFIK 64
Query: 144 ------------TGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKG 176
E A + NE Y F+I + I Y +
Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEV 124
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + IE P +KKKADWAL+WI E+ SF ER+IAFA+VEGIFFSG+F SIFWLKK
Sbjct: 125 EKDRLFRAIEVFPAIKKKADWALKWI--ESESFAERLIAFAAVEGIFFSGAFCSIFWLKK 182
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGL+PGLTFSNELISRDE +
Sbjct: 183 RGLLPGLTFSNELISRDEGM 202
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 73/102 (71%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK+ ++ E I DL W KLT DE+YFI H+LAFFAASDGIVNENL E
Sbjct: 28 WYKKQ---QACFWTAEEIDLHSDLVDWTTKLTDDERYFIKHILAFFAASDGIVNENLAEN 84
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ +EA+ FYGFQI MEN+HSE YSLLIDTY+KD+ E+
Sbjct: 85 FVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEK 126
>gi|15229476|ref|NP_189000.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis
thaliana]
gi|27735240|sp|P50651.2|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A;
AltName: Full=Ribonucleoside-diphosphate reductase R2A
subunit; Short=AtRNR2; Short=Protein R2at; AltName:
Full=Ribonucleotide reductase small subunit A
gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana]
gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana]
gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana]
gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis
thaliana]
Length = 341
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 114/209 (54%), Gaps = 39/209 (18%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
++E EPLL +RF +FPI+Y+ IW+MYKKAEASFWTAEEVDLS
Sbjct: 12 MEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDS 71
Query: 132 -----------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R L + + + Y F+I + Y +
Sbjct: 72 EKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAF---YGFQIAMENIHSEMYSLL 128
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I K IET+PC+ KKA W L WI SF R++AFA VEGIFFSGS
Sbjct: 129 LETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWI-QSPMSFAVRLVAFACVEGIFFSGS 187
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 188 FCAIFWLKKRGLMPGLTFSNELISRDEGL 216
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+ W LT EK+FISH+LAFFAASDGIV ENL RF +VQ+ EAR FYGF
Sbjct: 54 EEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGF 113
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLL++T+IKD +E+
Sbjct: 114 QIAMENIHSEMYSLLLETFIKDSKEK 139
>gi|212274629|ref|NP_001130908.1| uncharacterized protein LOC100192012 [Zea mays]
gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 117/203 (57%), Gaps = 40/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI+Y IW+ YKKA ASFWTAEEVDLS
Sbjct: 15 EPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFIS 74
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + +A+ +R Y F+I + Y + I
Sbjct: 75 HVLAFFAASDGIVLENLASRFMS--DVQAAEAR-AFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 181 GG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
G + IET+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF +IFW
Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCAIFW 190
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGL 213
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ EAR F
Sbjct: 48 TAEEVDLSADARHWDAALSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQAAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDGTEK 136
>gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO]
Length = 399
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 136/244 (55%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDXENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDL-------------------SKVV--------------VTNFEI 139
YK+AEASFWTAEE+DL S+V+ V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVK 192
++ E K+ Y F+I + Y + I K I T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 149/292 (51%), Gaps = 53/292 (18%)
Query: 8 FTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSD 67
P H T + + ++ L+ + +N +K +++ + KLS
Sbjct: 14 LVPRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVK---SDMLKEKLSK 70
Query: 68 SPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+ YK+AEASFWTA
Sbjct: 71 DAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTA 130
Query: 125 EEVD-------------------LSKVV--------------VTNFEIRALKTGEEKASH 151
EE+D +S+V+ V NF ++ E K+
Sbjct: 131 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTE-VQIPEAKSF- 188
Query: 152 SRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIAD 204
Y F+I + Y + I K I T+P + +KA+WALRWI D
Sbjct: 189 -----YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD 243
Query: 205 EASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI RDE L
Sbjct: 244 ADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGL 295
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 131 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 190
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 191 FQIMIENIHSETYSLLIDTYIKDPKE 216
>gi|410083375|ref|XP_003959265.1| hypothetical protein KAFR_0J00620 [Kazachstania africana CBS 2517]
gi|372465856|emb|CCF60130.1| hypothetical protein KAFR_0J00620 [Kazachstania africana CBS 2517]
Length = 391
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 139/257 (54%), Gaps = 52/257 (20%)
Query: 43 NINLFLPQNTLKDLTNNLQQSKLSDSPIKDK---STLKQVSAPVQENVETEPLLRDNPRR 99
N N+ + Q + D N ++LS++ K + S+ + ++E + EPLL +P R
Sbjct: 20 NSNVSIVQES--DAKNAEVNARLSEAARKHREYLSSHRIQRHALKETEQEEPLLVADPNR 77
Query: 100 FVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------------SKVV------- 133
+FPI++ +IW+ YK+AEASFWTAEE+DL S+V+
Sbjct: 78 KTVFPIKFHEIWQAYKRAEASFWTAEEIDLGKDLHDWNNRMNPNEKFFISRVLAFFAASD 137
Query: 134 -------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK--- 183
V NF + E KA Y F+I + Y + I K
Sbjct: 138 GLVNENLVENFSAE-VAIPEAKAF------YGFQIMIENIHSETYSLLIDTYIKDPKESE 190
Query: 184 ----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGL 239
I+T+P +K+KA WALRWI D S F ER++AFA++EG+FFSGSFASIFWLKKRGL
Sbjct: 191 FLFNAIDTIPQIKEKALWALRWINDAESPFAERLVAFAAIEGVFFSGSFASIFWLKKRGL 250
Query: 240 MPGLTFSNELISRDEDL 256
MPGLTFSNELI RDE L
Sbjct: 251 MPGLTFSNELICRDEGL 267
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +EK+FIS VLAFFAASDG+VNENLVE F+ EV I EA+ FYG
Sbjct: 103 EEIDLGKDLHDWNNRMNPNEKFFISRVLAFFAASDGLVNENLVENFSAEVAIPEAKAFYG 162
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 163 FQIMIENIHSETYSLLIDTYIKDPKE 188
>gi|395849989|ref|XP_003797586.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase subunit M2 B-like [Otolemur garnettii]
Length = 615
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 111/195 (56%), Gaps = 31/195 (15%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK- 148
EPLLR + R VIF IQY D WK YK+ +ASFWTAEEVDLSK + LK+ E+
Sbjct: 297 EPLLRKSSRHCVIFAIQYPDTWKTYKQEQASFWTAEEVDLSKDLP---HWNKLKSDEKYW 353
Query: 149 --------------------ASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK----- 183
S P + +I + Y + I K
Sbjct: 354 VSHILAFFAASDGIINENVVXSQEVQVPEVXQILIENVHSEMYSLLTDTYIXDPKKRDFL 413
Query: 184 --TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMP 241
IETMPCV+KKADW L WIAD S+ GERV+AFA+VE IFFSGSFA+IF LKKR LM
Sbjct: 414 FNVIETMPCVQKKADWTLXWIADIKSTLGERVVAFAAVERIFFSGSFAAIFXLKKRVLMS 473
Query: 242 GLTFSNELISRDEDL 256
GLTFSNELISRDE L
Sbjct: 474 GLTFSNELISRDEGL 488
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 64/86 (74%), Gaps = 7/86 (8%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKY++SH+LAFFAASDGI+NEN+V +QEVQ+ E
Sbjct: 332 EEVDLSKDLPHWNKLKSDEKYWVSHILAFFAASDGIINENVVX--SQEVQVPEVX----- 384
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLL DTYI D ++R
Sbjct: 385 QILIENVHSEMYSLLTDTYIXDPKKR 410
>gi|365759956|gb|EHN01709.1| Rnr2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 399
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 122/214 (57%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL------------- 129
++E + EPLL ++ R V+FPI+Y +IW+ YK+AEASFWTAEE+DL
Sbjct: 69 LKEMEQEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNE 128
Query: 130 ------SKVV--------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
S+V+ V NF ++ E K+ Y F+I +
Sbjct: 129 NERFFISRVLAFFAASDGIVNENLVENFSTE-VQIPEAKSF------YGFQIMIENIHSE 181
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K I T+P + +KA+WALRWI D + FGER++AFAS+EG+
Sbjct: 182 TYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGV 241
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRG+MPGLTFSNELI RDE L
Sbjct: 242 FFSGSFASIFWLKKRGMMPGLTFSNELICRDEGL 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei]
Length = 337
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 118/223 (52%), Gaps = 47/223 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YKKAE+S WT EE+DL
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E+R + + +E Y I
Sbjct: 77 VLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLID-------T 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKL 231
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D++ W KL E++FI HVLAFFAASDGIV ENL ERF EVQ+ E RCFYGF
Sbjct: 52 EEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YS+LIDTY+ D +E+
Sbjct: 112 QIAMENIHSETYSVLIDTYVVDPDEK 137
>gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo
laibachii Nc14]
Length = 1611
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 126/240 (52%), Gaps = 46/240 (19%)
Query: 53 LKDLTNNLQQSKLSDS----PIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQ 108
L+D ++ +LSDS P K+K Q+ EP LR+NP RFV+FPIQ
Sbjct: 39 LRDF--DMDSGELSDSNSITPFKEKEMNGQLLP--------EPFLRENPNRFVLFPIQQS 88
Query: 109 DIWKMYKKAEASFWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKASH 151
+IW MYKKAEASFWTAEE+DL K V+ F E A +
Sbjct: 89 EIWDMYKKAEASFWTAEEIDLVHDMNDWLNISDNERHFIKHVLAFFAASDGIVNENLAMN 148
Query: 152 SRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGKTIETMPC-------VKKKAD 196
+E Y F+I + Y + I + + C V KA
Sbjct: 149 FSSEVQIPEARCFYGFQIAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQ 208
Query: 197 WALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WAL+W + +SF ERV+AFA+VEGIFFSGSF SIFWLKKRGLMPGL FSNELISRDE L
Sbjct: 209 WALKWCDPKCASFAERVVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLCFSNELISRDEGL 268
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D++ W ++ +E++FI HVLAFFAASDGIVNENL F+ EVQI EARCFYGF
Sbjct: 105 EEIDLVHDMNDWLNISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGF 164
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE+YSLLIDTYIKD E+
Sbjct: 165 QIAIENIHSEVYSLLIDTYIKDPTEK 190
>gi|363582863|ref|ZP_09315673.1| ribonucleoside-diphosphate reductase small chain [Flavobacteriaceae
bacterium HQM9]
Length = 326
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 39/203 (19%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------- 141
EP+L++NP RFVIFPIQ+ D+W YKK EA FWTAEE+DL + + T+++ +
Sbjct: 5 VEPILKENPNRFVIFPIQHHDLWDWYKKMEACFWTAEEIDLHQDM-TDWQTKLSDDERYF 63
Query: 142 -------LKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKT---------- 184
+ +H+ E ++ ++ P + Y + + +T
Sbjct: 64 IKHILAFFAASDGIVNHNIGENFVNEVQY-PEAMFVYTFQMMIENIHSETYSLLIDTYVK 122
Query: 185 -----------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+E P +KKKADWAL W + SF ER+IAFA+VEG+FFSG+F SIFW
Sbjct: 123 DEVEKDKLFRALEEFPAIKKKADWALNWAT--SDSFAERLIAFAAVEGVFFSGAFCSIFW 180
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE +
Sbjct: 181 LKKRGLMPGLTFSNELISRDEGM 203
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +D++ W KL+ DE+YFI H+LAFFAASDGIVN N+ E
Sbjct: 29 WYKK---MEACFWTAEEIDLHQDMTDWQTKLSDDERYFIKHILAFFAASDGIVNHNIGEN 85
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA Y FQ+ +EN+HSE YSLLIDTY+KD+ E+
Sbjct: 86 FVNEVQYPEAMFVYTFQMMIENIHSETYSLLIDTYVKDEVEK 127
>gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 114/209 (54%), Gaps = 39/209 (18%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
+ E+ EPLL +RF +FPI+Y+ IW+MYKKAEASFWTAEEVDLS
Sbjct: 12 MDEDESKEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDS 71
Query: 132 -----------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R L + + + Y F+I + Y +
Sbjct: 72 EKHFISHVLAFFAASDGIVLENLAARFLNDVQVPEARAF---YGFQIAMENIHSEMYSLL 128
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
+ K IET+PC+ KKA W L WI SF R++AFA VEGIFFSGS
Sbjct: 129 LETFLKDSKEKDRLFNAIETIPCISKKAKWCLDWI-QSPMSFAVRLVAFACVEGIFFSGS 187
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 188 FCAIFWLKKRGLMPGLTFSNELISRDEGL 216
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 65/79 (82%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D+ W LT EK+FISHVLAFFAASDGIV ENL RF +VQ+ EAR FYGFQIAMEN+
Sbjct: 61 DVQQWEALTDSEKHFISHVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENI 120
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++T++KD +E+
Sbjct: 121 HSEMYSLLLETFLKDSKEK 139
>gi|402495788|ref|ZP_10842508.1| ribonucleoside-diphosphate reductase small chain [Aquimarina
agarilytica ZC1]
Length = 326
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 118/201 (58%), Gaps = 37/201 (18%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------KVVVTNFEIRALK 143
EP+L++NP RFVIFPI++ D+W+ YKK EA FWTAEE+DL K ++ E +K
Sbjct: 6 EPILKENPNRFVIFPIEHHDLWEWYKKMEACFWTAEEIDLHQDLSDWKTKLSEDERYFIK 65
Query: 144 -------TGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKT------------ 184
+ +H+ E ++ ++ P + Y + + +T
Sbjct: 66 HILAFFAASDGIVNHNIGENFVNEVQY-PEAMFVYTFQMMIENIHSETYSLLIDTYVKDE 124
Query: 185 ---------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+E P +KKKADWAL W A + SF ER+IAFA+VEG+FFSG+F SIFWLK
Sbjct: 125 VEKDKLFRALEEFPAIKKKADWALNWAA--SDSFAERLIAFAAVEGVFFSGAFCSIFWLK 182
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELISRDE +
Sbjct: 183 KRGLMPGLTFSNELISRDEGM 203
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 70/102 (68%), Gaps = 4/102 (3%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVER 291
W KK M ++ E I +DLS W KL+ DE+YFI H+LAFFAASDGIVN N+ E
Sbjct: 29 WYKK---MEACFWTAEEIDLHQDLSDWKTKLSEDERYFIKHILAFFAASDGIVNHNIGEN 85
Query: 292 FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
F EVQ EA Y FQ+ +EN+HSE YSLLIDTY+KD+ E+
Sbjct: 86 FVNEVQYPEAMFVYTFQMMIENIHSETYSLLIDTYVKDEVEK 127
>gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3]
Length = 306
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 134/244 (54%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETM-------PCVK 192
++ E K+ Y F+I + Y + I K E + P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|401841001|gb|EJT43584.1| RNR2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 367
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 122/214 (57%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL------------- 129
++E + EPLL ++ R V+FPI+Y +IW+ YK+AEASFWTAEE+DL
Sbjct: 37 LKEMEQEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNE 96
Query: 130 ------SKVV--------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
S+V+ V NF ++ E K+ Y F+I +
Sbjct: 97 NERFFISRVLAFFAASDGIVNENLVENFSTE-VQIPEAKSF------YGFQIMIENIHSE 149
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + I K I T+P + +KA+WALRWI D + FGER++AFAS+EG+
Sbjct: 150 TYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGV 209
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRG+MPGLTFSNELI RDE L
Sbjct: 210 FFSGSFASIFWLKKRGMMPGLTFSNELICRDEGL 243
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 79 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 138
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 139 FQIMIENIHSETYSLLIDTYIKDPKE 164
>gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 125/241 (51%), Gaps = 48/241 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YK+AE+S WT EE+DL
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E+R + + +E Y I
Sbjct: 77 VLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLID-------T 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVE 290
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ L + I N L+E
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNK-LPRDRVLEIICNAVLIE 247
Query: 291 R 291
R
Sbjct: 248 R 248
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D++ W KL E++FI HVLAFFAASDGIV ENL ERF EVQ+ E RCFYGF
Sbjct: 52 EEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YS+LIDTY+ D +E+
Sbjct: 112 QIAMENIHSETYSVLIDTYVVDPDEK 137
>gi|402466347|gb|EJW01856.1| hypothetical protein EDEG_03668 [Edhazardia aedis USNM 41457]
Length = 324
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 119/199 (59%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------VVVTN--FEIRA 141
E LL RFV+FPI++++IW+MYKKA++ FW+AEEVDLSK ++ ++ + I+
Sbjct: 4 EFLLEQTEDRFVLFPIKHEEIWRMYKKAQSCFWSAEEVDLSKDKEQWQLLSSDEQYFIKH 63
Query: 142 LKTGEEKASHSRNEPYLFRIKL---APGGICRYKVK---------------------KGG 177
+ + NE L R P C Y +
Sbjct: 64 ILAFFAASDGIVNENLLERFAAEVQVPEARCFYGFQIAIENIHSEMYSLLLDTLIRDSNE 123
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K I+T+PC+K+KA+WAL+WI+D+ S F +R++AFA VEGIFFSG+FA+IFWLKKR
Sbjct: 124 KNMLFNAIQTIPCIKRKAEWALKWISDKDSHFSKRLLAFACVEGIFFSGAFAAIFWLKKR 183
Query: 238 GLMPGLTFSNELISRDEDL 256
G+M GLTFSNELISRDE L
Sbjct: 184 GIMDGLTFSNELISRDEGL 202
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 70/88 (79%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
S E + +D W L+ DE+YFI H+LAFFAASDGIVNENL+ERF EVQ+ EARCFY
Sbjct: 37 SAEEVDLSKDKEQWQLLSSDEQYFIKHILAFFAASDGIVNENLLERFAAEVQVPEARCFY 96
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLL+DT I+D E+
Sbjct: 97 GFQIAIENIHSEMYSLLLDTLIRDSNEK 124
>gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens]
Length = 319
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 114/201 (56%), Gaps = 39/201 (19%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------KVV 133
+L N RFV+FPI++ DIW+MYK+AEASFWTAEEVDL K V
Sbjct: 1 MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDTKLNDKERHFIKHV 60
Query: 134 VTNFEIRALKTGEEKASHSRNEP--------YLFRI----------KLAPGGICRYKVKK 175
+ F E A + E Y F+I L R KK
Sbjct: 61 LAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQKK 120
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+T I+TMPCV +KA WALRW + +SF ER++AFA+VEGIFFSGSF ++FWLK
Sbjct: 121 HECLTA---IDTMPCVAEKAQWALRWCDPDHASFTERLLAFAAVEGIFFSGSFCAVFWLK 177
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL+FSNELI+RDE L
Sbjct: 178 KRGLMPGLSFSNELIARDEGL 198
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 67/81 (82%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
D+ HW+ KL E++FI HVLAFFAASDGIVNENL + F EVQ EARCFYGFQIA+E
Sbjct: 40 HDVQHWDTKLNDKERHFIKHVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIE 99
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE+YSLLIDTYI+D +++
Sbjct: 100 NIHSEVYSLLIDTYIRDAQKK 120
>gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
tauri]
gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS), partial
[Ostreococcus tauri]
Length = 382
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 113/202 (55%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------- 130
EPLLRDNP RF +FPI++ +W+MYKKAEASFWTAEEVDL+
Sbjct: 63 EPLLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQTLNENEKHFVSH 122
Query: 131 ---------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+V+ N R + + + S Y F++ + Y + I
Sbjct: 123 VLAFFASSDGIVLENLCSRFMSDVQLPEARSF---YGFQLAIENIHSEMYSLLLDTYIKD 179
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K I T+P V KADWAL WI +AS F ER++ FA VEGIFFSGSF +IFWL
Sbjct: 180 PKKKSELFRAIHTVPTVAMKADWALHWIGSDAS-FPERLVGFACVEGIFFSGSFCAIFWL 238
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLM GLTFSNELISRDE L
Sbjct: 239 KKRGLMRGLTFSNELISRDEGL 260
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 64/79 (81%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D W L +EK+F+SHVLAFFA+SDGIV ENL RF +VQ+ EAR FYGFQ+A+EN+
Sbjct: 105 DYKDWQTLNENEKHFVSHVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENI 164
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL+DTYIKD +++
Sbjct: 165 HSEMYSLLLDTYIKDPKKK 183
>gi|409097319|ref|ZP_11217343.1| ribonucleoside-diphosphate reductase [Pedobacter agri PB92]
Length = 323
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 116/200 (58%), Gaps = 34/200 (17%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS---------------- 130
+E E LL++N RFV+ PI+Y IW+MYKK EASFWTAEE+DLS
Sbjct: 1 MEQELLLQENKDRFVLLPIKYPAIWEMYKKTEASFWTAEEIDLSDDQKHWDNLNDGERHF 60
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITG 181
++ F E A + +E Y F+I + Y + I
Sbjct: 61 ISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHAETYALLIDTYIKD 120
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ I+T+P VK+KA+WALRWI E +F ER++AFA+VEGIFFSGSF SIFWL
Sbjct: 121 PEEKDRLFHAIDTVPAVKRKAEWALRWI--ENGTFAERLVAFAAVEGIFFSGSFCSIFWL 178
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 179 KKRGLMPGLTFSNELISRDE 198
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D HW+ L E++FISH+LAFF+ASDGIVNENL F EVQ+ EARCFYGF
Sbjct: 39 EEIDLSDDQKHWDNLNDGERHFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+H+E Y+LLIDTYIKD EE+
Sbjct: 99 QIMMENIHAETYALLIDTYIKDPEEK 124
>gi|341884021|gb|EGT39956.1| CBN-RNR-2 protein [Caenorhabditis brenneri]
Length = 761
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 42/212 (19%)
Query: 82 PVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------- 131
P++ + +PLL D+ RFVI+PI+++DIW YK A ASFWT EE+DL K
Sbjct: 434 PLRNPIIDKPLLVDSDNRFVIYPIKHRDIWNYYKMAVASFWTTEEIDLGKDMDDWNKLSA 493
Query: 132 ------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR--- 170
+VV N R + E K + +R + + ++A I
Sbjct: 494 DEKTFISTVLAFFAASDGIVVENLCERF--STEVKLTEAR---FFYGFQIAVENIHSETY 548
Query: 171 ------YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
Y + + I +KKKADWALRWI+D ++F ER++AFA+VEGIFF
Sbjct: 549 AKLIETYIKDESERRVLFDAINGFEFIKKKADWALRWISDTETNFAERLVAFAAVEGIFF 608
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLT SNELI+RDE L
Sbjct: 609 SGSFASIFWLKKRGLMPGLTHSNELIARDEGL 640
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 71/88 (80%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E I +D+ WNKL+ DEK FIS VLAFFAASDGIV ENL ERF+ EV++TEAR FY
Sbjct: 475 TTEEIDLGKDMDDWNKLSADEKTFISTVLAFFAASDGIVVENLCERFSTEVKLTEARFFY 534
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSE Y+ LI+TYIKD+ ER
Sbjct: 535 GFQIAVENIHSETYAKLIETYIKDESER 562
>gi|346972025|gb|EGY15477.1| ribonucleoside-diphosphate reductase small chain [Verticillium
dahliae VdLs.17]
Length = 414
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 122/221 (55%), Gaps = 48/221 (21%)
Query: 77 KQVSAPVQENVET-EPLLRDNPRRFVIFPIQYQDIWKMYKKAEA---------------- 119
K V AP ++ E EPLLR+N +RFV+FPI+Y +IW+MYKKAEA
Sbjct: 67 KAVVAPGIKDFEADEPLLRENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 126
Query: 120 -----------------SFWTAEEVDLSKVVVTNF-------EIRALKTGEEKASHSRNE 155
+F+ A + +++ +V F E R + + +E
Sbjct: 127 WNNKINDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSE 186
Query: 156 PYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIA 215
Y I Y + + I+T+PC++KKADWAL WI D+ S+F R++A
Sbjct: 187 TYSLLID-------TYIKEPAQRTYLFNAIDTIPCIRKKADWALTWITDKKSTFATRLVA 239
Query: 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA VEGIFFSG+FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 240 FAVVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 280
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN K+ DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 116 EEIDLSKDLHDWNNKINDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYG 175
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 176 FQIMMENIHSETYSLLIDTYIKEPAQR 202
>gi|194690416|gb|ACF79292.1| unknown [Zea mays]
gi|194704028|gb|ACF86098.1| unknown [Zea mays]
gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
gi|223943167|gb|ACN25667.1| unknown [Zea mays]
gi|414586551|tpg|DAA37122.1| TPA: Ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 115/206 (55%), Gaps = 46/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI+Y IW+ YKKA ASFWTAEEVDLS
Sbjct: 15 EPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFIS 74
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R + + E +A Y F+I + Y +
Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAF------YGFQIAIENIHSEMYSLLLET 128
Query: 178 KITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I G + IET+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF +
Sbjct: 129 YIRDGTEKDRLFRAIETVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCA 187
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 188 IFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVDLSADARHWDAALSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDGTEK 136
>gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake
phycodnavirus 2]
Length = 324
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 113/203 (55%), Gaps = 38/203 (18%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
TEPLL ++ RFV+FP+ + IWKMYKK FW EE+D SK
Sbjct: 6 TEPLLTEDDNRFVMFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHWNKLNTDEQYFIK 65
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N +R + E + S +R Y F+I + Y + I
Sbjct: 66 MILAFFASSDGIVLENLGLRFM--NEVQLSEAR-AFYGFQIAMENIHSETYSLLIDSYIK 122
Query: 181 GG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
++E PC+KKK DWA++WI D+ SSF R++AFA VEGIFFSG+F SI+W
Sbjct: 123 DSDEKHKLFHSLEHFPCIKKKGDWAMKWIQDKKSSFATRLVAFACVEGIFFSGAFCSIYW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 183 LKKRGLMPGLTFSNELISRDEAL 205
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D++HWNKL DE+YFI +LAFFA+SDGIV ENL RF EVQ++EAR FYGF
Sbjct: 42 EEIDTSKDMTHWNKLNTDEQYFIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLID+YIKD +E+
Sbjct: 102 QIAMENIHSETYSLLIDSYIKDSDEK 127
>gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
Length = 337
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 111/200 (55%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL +NP RFVIFPI+Y DIW YK A ASFWTA+E+DLS+
Sbjct: 18 EPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEKLTDGERFFISR 77
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + + E + +R Y F+I ++ I Y
Sbjct: 78 VLSFFAASDGIVNENLTGRFSTEVQVPEARF-FYGFQIMMEGVHSEMYSKMIEAYIKDPK 136
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
++ I C+KKKADWALRWI D S F R+IAFA+VEGI FSGSFA+IFWLKK
Sbjct: 137 EQMVHFDAIHQFECIKKKADWALRWIDDRNSPFPVRLIAFAAVEGIMFSGSFAAIFWLKK 196
Query: 237 RGLMPGLTFSNELISRDEDL 256
RG+M GLT SNELISRDE L
Sbjct: 197 RGVMKGLTHSNELISRDEGL 216
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 64/84 (76%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
I D + W KLT E++FIS VL+FFAASDGIVNENL RF+ EVQ+ EAR FYGFQI
Sbjct: 55 IDLSRDYADWEKLTDGERFFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQI 114
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
ME VHSEMYS +I+ YIKD +E+
Sbjct: 115 MMEGVHSEMYSKMIEAYIKDPKEQ 138
>gi|452822363|gb|EME29383.1| ribonucleotide reductase small subunit [Galdieria sulphuraria]
Length = 375
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 134/256 (52%), Gaps = 45/256 (17%)
Query: 40 FEPNINLFLPQNTLKDLTNNLQQS----KLSDSPIKDKSTLKQVSAPVQENVETEPLLRD 95
F+ NI++ + LKD N Q++ K S KD +K++ ++
Sbjct: 4 FKENISISVQSPVLKDY--NKQETGNIIKTDSSETKDSYAVKELYQTASKSQVPFVFCSG 61
Query: 96 NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------------ 131
+ R+ +FPI++ +IWKMYKK EASFWTAEE+DLS
Sbjct: 62 SSERYTLFPIRHPEIWKMYKKHEASFWTAEEIDLSSDLEDWKKLNADERHFISHVLAFFA 121
Query: 132 ----VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK---- 183
+V+ N R + + + Y F+I + Y + I +
Sbjct: 122 SSDGIVLENLAERFCRDVQIPEARCF---YGFQIAMENIHSETYSLLIDTYIRDAQEKAR 178
Query: 184 ---TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLM 240
+E +PC++KKA WALRWI AS F ER++AFA+VEGIFFSGSF SIFWLKKRGLM
Sbjct: 179 LFEAMERIPCIEKKAQWALRWIQSSAS-FAERLVAFAAVEGIFFSGSFCSIFWLKKRGLM 237
Query: 241 PGLTFSNELISRDEDL 256
PGLTFSNELISRDE L
Sbjct: 238 PGLTFSNELISRDEGL 253
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL W KL DE++FISHVLAFFA+SDGIV ENL ERF ++VQI EARCFYGF
Sbjct: 91 EEIDLSSDLEDWKKLNADERHFISHVLAFFASSDGIVLENLAERFCRDVQIPEARCFYGF 150
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYI+D +E+
Sbjct: 151 QIAMENIHSETYSLLIDTYIRDAQEK 176
>gi|3914640|sp|O15910.1|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase R2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei]
gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 118/223 (52%), Gaps = 47/223 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YK+AE+S WT EE+DL
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E+R + + +E Y I
Sbjct: 77 VLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLID-------T 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKL 231
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D++ W KL E++FI HVLAFFAASDGIV ENL ERF EVQ+ E RCFYGF
Sbjct: 52 EEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YS+LIDTY+ D +E+
Sbjct: 112 QIAMENIHSETYSVLIDTYVVDPDEK 137
>gi|389741966|gb|EIM83154.1| ribonucleotide reductase subunit R2 [Stereum hirsutum FP-91666 SS1]
Length = 341
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 114/216 (52%), Gaps = 47/216 (21%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------- 131
A ++ E +L NP RFV+FPI Y D+W MY++A ASFWT E+++
Sbjct: 2 AMASSSITQEIVLTPNPGRFVLFPIVYPDLWDMYQRALASFWTTSEINMVHDIRQWTEAL 61
Query: 132 --------------------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFR 160
+VV N E RA + +E Y
Sbjct: 62 TANERHFISHVLAFFAASDGIVVENLVSRFASEVQLAEARAFYASQAMMETIHSETYAML 121
Query: 161 IKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVE 220
I + + G + +E++PCVK+KA WA++WIAD +SF R+IAFA VE
Sbjct: 122 IDVLIKDM-------GERERLFNAMESIPCVKEKATWAVKWIADAEASFPIRLIAFAVVE 174
Query: 221 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
G+FFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 175 GVFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 210
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 250 ISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
I+ D+ W + LT +E++FISHVLAFFAASDGIV ENLV RF EVQ+ EAR FY Q
Sbjct: 48 INMVHDIRQWTEALTANERHFISHVLAFFAASDGIVVENLVSRFASEVQLAEARAFYASQ 107
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
ME +HSE Y++LID IKD ER
Sbjct: 108 AMMETIHSETYAMLIDVLIKDMGER 132
>gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 118/223 (52%), Gaps = 47/223 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YK+AE+S WT EE+DL
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E+R + + +E Y I
Sbjct: 77 VLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLID-------T 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKL 231
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D++ W KL E++FI HVLAFFAASDGIV ENL ERF EVQ+ E RCFYGF
Sbjct: 52 EEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YS+LIDTY+ D +E+
Sbjct: 112 QIAMENIHSETYSVLIDTYVVDPDEK 137
>gi|426223128|ref|XP_004005729.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Ovis
aries]
Length = 297
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 107/177 (60%), Gaps = 34/177 (19%)
Query: 113 MYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGE 146
MYKKAEASFWTAEEVDLSK + + N + + E
Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQE 60
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWAL 199
+ + +R Y F+I + Y + I K IETMPCVKKKADWAL
Sbjct: 61 VQITEARC-FYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWAL 119
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
RWI D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 120 RWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 176
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 11 TAEEVDLSKDIQHWEALKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 70
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 71 GFQIAMENIHSEMYSLLIDTYIKDSKER 98
>gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein
[Tetrahymena thermophila]
gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein
[Tetrahymena thermophila SB210]
Length = 376
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 129/249 (51%), Gaps = 62/249 (24%)
Query: 73 KSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKV 132
KS + AP +E E EPLL+DNP RFV+FPI+Y +W+MYKK ASFWTA+E+DL
Sbjct: 42 KSKNDEGKAP-KEGYEDEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWTADEIDL--- 97
Query: 133 VVTNFEIRALKTGEEKASHSRN-EPYLFRIKLAPGGI----------CRYKVKKGGKITG 181
+ LK E + R+ Y+ A GI C ++ + G
Sbjct: 98 ------YQDLKDWERLTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARAFYG 151
Query: 182 G------------------------------KTIETMPCVKKKADWALRWIADEASSFGE 211
K + +P + KKA WAL+WI + +F
Sbjct: 152 FQIAMENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWINNN-DNFAS 210
Query: 212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL---------SHWN-K 261
R+IAFA++EGIFFSGSF +IFWLKKR LMPGLTFSNELISRDE L S N K
Sbjct: 211 RLIAFAAIEGIFFSGSFCAIFWLKKRSLMPGLTFSNELISRDEGLHTDFACLLYSMLNKK 270
Query: 262 LTRDEKYFI 270
LT++E Y I
Sbjct: 271 LTKEEIYEI 279
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 67/80 (83%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
+DL W +LT +E++FI +VLAFFAASDGIV ENL E+F EVQI EAR FYGFQIAMEN
Sbjct: 99 QDLKDWERLTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARAFYGFQIAMEN 158
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSE YSLLIDTYIKD+ E+
Sbjct: 159 IHSETYSLLIDTYIKDEVEK 178
>gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa
Japonica Group]
Length = 339
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 115/206 (55%), Gaps = 46/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI+Y IW+ YKKA ASFWTAEEVDLS
Sbjct: 15 EPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFIS 74
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R + + E +A Y F+I + Y +
Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAF------YGFQIAIENIHSEMYSLLLET 128
Query: 178 KITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I G + I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF +
Sbjct: 129 YIRDGAEKDRLFRAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCA 187
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 188 IFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVDLSADARHWDAALSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDGAEK 136
>gi|448513504|ref|XP_003866973.1| Rnr21 ribonucleoside-diphosphate reductase [Candida orthopsilosis
Co 90-125]
gi|380351311|emb|CCG21535.1| Rnr21 ribonucleoside-diphosphate reductase [Candida orthopsilosis
Co 90-125]
Length = 422
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 118/207 (57%), Gaps = 47/207 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS----------------------------- 120
EPLL++N RR+V+FPI+Y +IW+MYKKAEAS
Sbjct: 99 EPLLKENTRRYVMFPIRYHEIWQMYKKAEASFWTAEEIDLGKDLHDWREKLNDNERFFIG 158
Query: 121 ----FWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKG 176
F+ A + +++ +V NF ++ E K+ Y F+I + Y +
Sbjct: 159 RILAFFAASDGIVNENLVENFSAE-VQIPEAKSF------YGFQIMMENIHSETYSLLIE 211
Query: 177 GKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I K IET+P +KKKADWA+RWI D + F ER++AFA+VEGIFFSGSFA
Sbjct: 212 TYIKDPKEADFLFNAIETIPQIKKKADWAIRWIQDSEALFAERLVAFAAVEGIFFSGSFA 271
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 272 SIFWLKKRGLMPGLTFSNELICRDEGL 298
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W KL +E++FI +LAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 134 EEIDLGKDLHDWREKLNDNERFFIGRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYG 193
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLI+TYIKD +E
Sbjct: 194 FQIMMENIHSETYSLLIETYIKDPKE 219
>gi|402589750|gb|EJW83681.1| ribonucleoside-diphosphate reductase [Wuchereria bancrofti]
Length = 365
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 133/249 (53%), Gaps = 42/249 (16%)
Query: 41 EPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRF 100
E N+N N L + NL K ++ P T + + V+ E LL +NP RF
Sbjct: 5 EVNVNC----NDLLSVKENLTIQK-TEPPC---GTCETATTTVRYETNGEILLAENPNRF 56
Query: 101 VIFPIQYQDIWKMYKKAEASFWTAEEVDL------------------SKVV--------V 134
VIFPI++ DIW YKKA ASFWT +EVDL S+V+ +
Sbjct: 57 VIFPIKFHDIWGFYKKALASFWTVDEVDLSKDYRDWENLNDGERHFISRVLAFFAASDGI 116
Query: 135 TNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKGGKITGGKTIET 187
N + + E + +R Y F+I ++ I Y + K I
Sbjct: 117 VNENLVNRFSQEVQVPEARF-FYGFQIMIENIHSEMYSKMIDTYIRDQKQKSLLFNAIYE 175
Query: 188 MPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSN 247
VKKKADWAL WIAD +S+ ER+IAFA+VEGIFFSGSFA+IFWLKKRGLMPGLT SN
Sbjct: 176 FEFVKKKADWALCWIADINASYAERLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTHSN 235
Query: 248 ELISRDEDL 256
ELISRDE L
Sbjct: 236 ELISRDEGL 244
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 82/124 (66%), Gaps = 2/124 (1%)
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYF 269
GE ++A + F F I+ K+ L T +S+D W L E++F
Sbjct: 45 GEILLAENPNRFVIFPIKFHDIWGFYKKALASFWTVDEVDLSKD--YRDWENLNDGERHF 102
Query: 270 ISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKD 329
IS VLAFFAASDGIVNENLV RF+QEVQ+ EAR FYGFQI +EN+HSEMYS +IDTYI+D
Sbjct: 103 ISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHSEMYSKMIDTYIRD 162
Query: 330 QEER 333
Q+++
Sbjct: 163 QKQK 166
>gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
Length = 240
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 111/200 (55%), Gaps = 34/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL +NP RFVIFPI+Y DIW YK A ASFWTA+E+DLS+
Sbjct: 11 EPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEKLTDGERFFISR 70
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + + E + +R Y F+I ++ I Y
Sbjct: 71 VLSFFAASDGIVNENLTGRFSTEVQVPEARF-FYGFQIMMEGVHSEMYSKMIEAYIKDPK 129
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
++ I C+KKKADWALRWI D S F R+IAFA+VEGI FSGSFA+IFWLKK
Sbjct: 130 EQMVHFDAIHQFECIKKKADWALRWIDDRNSPFPVRLIAFAAVEGIMFSGSFAAIFWLKK 189
Query: 237 RGLMPGLTFSNELISRDEDL 256
RG+M GLT SNELISRDE L
Sbjct: 190 RGVMKGLTHSNELISRDEGL 209
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 64/84 (76%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
I D + W KLT E++FIS VL+FFAASDGIVNENL RF+ EVQ+ EAR FYGFQI
Sbjct: 48 IDLSRDYADWEKLTDGERFFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQI 107
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
ME VHSEMYS +I+ YIKD +E+
Sbjct: 108 MMEGVHSEMYSKMIEAYIKDPKEQ 131
>gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 117/223 (52%), Gaps = 47/223 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YK+AE+S WT EE+DL
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E+R + + E Y I
Sbjct: 77 VLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLID-------T 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKL 231
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D++ W KL E++FI HVLAFFAASDGIV ENL ERF EVQ+ E RCFYGF
Sbjct: 52 EEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+H E YS+LIDTY+ D +E+
Sbjct: 112 QIAMENIHCETYSVLIDTYVVDPDEK 137
>gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
Length = 339
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 115/206 (55%), Gaps = 46/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI++ IW+ YKKA ASFWTAEEVDLS
Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFIS 74
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R + + E +A Y F+I + Y +
Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAF------YGFQIAIENIHSEMYSLLLET 128
Query: 178 KITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I G + IET+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF +
Sbjct: 129 YIRDGAEKDRLFRAIETVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCA 187
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 188 IFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVDLSADARHWDAALSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDGAEK 136
>gi|354546840|emb|CCE43572.1| hypothetical protein CPAR2_212160 [Candida parapsilosis]
Length = 422
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 118/207 (57%), Gaps = 47/207 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS----------------------------- 120
EPLL++N RR+V+FPI+Y +IW+MYKKAEAS
Sbjct: 99 EPLLKENKRRYVMFPIRYHEIWQMYKKAEASFWTAEEIDLGKDLHDWREKLNDNERFFIG 158
Query: 121 ----FWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKG 176
F+ A + +++ +V NF ++ E K+ Y F+I + Y +
Sbjct: 159 RILAFFAASDGIVNENLVENFSAE-VQIPEAKSF------YGFQIMMENIHSETYSLLIE 211
Query: 177 GKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
I K IET+P +KKKADWA+RWI D + F ER++AFA+VEGIFFSGSFA
Sbjct: 212 TYIKDPKEADFLFNAIETIPQIKKKADWAIRWIQDSDALFAERLVAFAAVEGIFFSGSFA 271
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
SIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 272 SIFWLKKRGLMPGLTFSNELICRDEGL 298
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W KL +E++FI +LAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 134 EEIDLGKDLHDWREKLNDNERFFIGRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYG 193
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLI+TYIKD +E
Sbjct: 194 FQIMMENIHSETYSLLIETYIKDPKE 219
>gi|410955834|ref|XP_003984555.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Felis
catus]
Length = 297
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 107/177 (60%), Gaps = 34/177 (19%)
Query: 113 MYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGE 146
MYKKAEASFWTAEEVDLSK + + N + + E
Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWESLKAEERYFISHVLAFFAASDGIVNENLVERFSQE 60
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWAL 199
+ + +R Y F+I + Y + I + IETMPCVKKKADWAL
Sbjct: 61 VQITEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPREREFLFNAIETMPCVKKKADWAL 119
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
RWI D+ S++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 120 RWIGDKESTYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 176
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 76/88 (86%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 11 TAEEVDLSKDIQHWESLKAEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 70
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD ER
Sbjct: 71 GFQIAMENIHSEMYSLLIDTYIKDPRER 98
>gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group]
Length = 345
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 115/206 (55%), Gaps = 46/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI+Y IW+ YKKA ASFWTAEEVDLS
Sbjct: 21 EPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFVS 80
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N R + + E +A Y F+I + Y +
Sbjct: 81 HVLAFFAASDGIVLENLASRFMSDVQVAEARAF------YGFQIAIENIHSEMYSLLLET 134
Query: 178 KITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I G + I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF +
Sbjct: 135 YIRDGAEKDRLFRAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCA 193
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 194 IFWLKKRGLMPGLTFSNELISRDEGL 219
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++F+SHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 54 TAEEVDLSADARHWDAALSPDERHFVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 113
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 114 YGFQIAIENIHSEMYSLLLETYIRDGAEK 142
>gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Acyrthosiphon pisum]
Length = 345
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 114/225 (50%), Gaps = 48/225 (21%)
Query: 72 DKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
DK+T + + + EPLL+DNPRRFVIFPI Y +IW MYKK EAS W E V+L
Sbjct: 20 DKNTFFGICDCLNFDATIEPLLKDNPRRFVIFPIIYDNIWAMYKKHEASLWNIEAVNLK- 78
Query: 132 VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGI-------------------CRYK 172
++ E T EE+ S Y+ A GI C Y
Sbjct: 79 ---SDLEDWMRMTDEERHFIS----YILAFLAASNGIVSENLVKRFSQEVQVTEARCFYG 131
Query: 173 VK---------------------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGE 211
+ K T ETMPCVKK ADW L+WI D ++FGE
Sbjct: 132 FQIMIENIHSEMYSLLIDTYIKDPKEKETLINATETMPCVKKMADWVLKWITDSKATFGE 191
Query: 212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
R++ FA+V+GIF SG+ SI WL KRGLM GLTFSNELI RDE L
Sbjct: 192 RLVTFAAVKGIFLSGNVPSITWLTKRGLMLGLTFSNELIFRDEGL 236
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E ++ DL W ++T +E++FIS++LAF AAS+GIV+ENLV+RF+QEVQ+TEARCFYGF
Sbjct: 73 EAVNLKSDLEDWMRMTDEERHFISYILAFLAASNGIVSENLVKRFSQEVQVTEARCFYGF 132
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +EN+HSEMYSLLIDTYIKD +E+
Sbjct: 133 QIMIENIHSEMYSLLIDTYIKDPKEK 158
>gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi]
gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 119/200 (59%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRALKT 144
E LL++NP RFV+FP++Y IW+MYKKA ASFWTAEEVDL + +T E +K+
Sbjct: 19 EALLKENPHRFVLFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTTLTPNEQHFIKS 78
Query: 145 -------GEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------------- 183
+ + + + ++ +++ P C Y + + +
Sbjct: 79 VLAFFAASDGIVNENLCQQFMAEVQI-PEARCFYGFQIAIENIHAEMYSTLIETLIKDQR 137
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I+T+P V+KKA WA++WI +E + F ER++AFA VEGIFFSGSF SIFWLKK
Sbjct: 138 ERHRLFNAIDTVPSVQKKARWAMKWINNE-NLFAERLLAFACVEGIFFSGSFCSIFWLKK 196
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGL FSNELISRDE L
Sbjct: 197 RGLMPGLAFSNELISRDEGL 216
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F + I+ + K+ + T E + D++ W LT +E++FI VLAFFAASD
Sbjct: 30 VLFPLEYPKIWEMYKKAMASFWT--AEEVDLHTDITQWTTLTPNEQHFIKSVLAFFAASD 87
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENL ++F EVQI EARCFYGFQIA+EN+H+EMYS LI+T IKDQ ER
Sbjct: 88 GIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRER 139
>gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
Length = 323
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 111/202 (54%), Gaps = 36/202 (17%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------VVV 134
EPLL ++ RFVI+PI++ DIW YKKA ASFWT EEVD+ K +
Sbjct: 3 AEPLLVESGIRFVIYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWERLSADEKKFIS 62
Query: 135 TNFEIRALKTG---EEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIET---- 187
T A G E S NE + + G + V+ T K IET
Sbjct: 63 TVLAFFAASDGIVVENLCSRFANEVKIVEARFFYG--FQIAVENIHSETYAKLIETYIKD 120
Query: 188 -------------MPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+KKKADWALRWI+D S F R++AFA+VEGIFFSGSFASIFWL
Sbjct: 121 ERERLVLFDAIKNFEFIKKKADWALRWISDMTSPFAHRLVAFAAVEGIFFSGSFASIFWL 180
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGL+PGLT SNELISRDE L
Sbjct: 181 KKRGLLPGLTHSNELISRDEGL 202
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 68/88 (77%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D++ W +L+ DEK FIS VLAFFAASDGIV ENL RF EV+I EAR FY
Sbjct: 37 TTEEVDVGKDMADWERLSADEKKFISTVLAFFAASDGIVVENLCSRFANEVKIVEARFFY 96
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSE Y+ LI+TYIKD+ ER
Sbjct: 97 GFQIAVENIHSETYAKLIETYIKDERER 124
>gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens]
gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens]
Length = 297
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 107/177 (60%), Gaps = 34/177 (19%)
Query: 113 MYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGE 146
MYKKAEASFWTAEEVDLSK + + N + + E
Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQE 60
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWAL 199
+ + +R Y F+I + Y + I K IETMPCVKKKADWAL
Sbjct: 61 VQITEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWAL 119
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
RWI D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 120 RWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 176
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 11 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 70
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 71 GFQIAMENIHSEMYSLLIDTYIKDPKER 98
>gi|367002221|ref|XP_003685845.1| hypothetical protein TPHA_0E03210 [Tetrapisispora phaffii CBS 4417]
gi|357524144|emb|CCE63411.1| hypothetical protein TPHA_0E03210 [Tetrapisispora phaffii CBS 4417]
Length = 401
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 123/214 (57%), Gaps = 47/214 (21%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL------------- 129
++E ++EPLL ++ R V++PI+Y D+++ YK+AEASFWTAEE+DL
Sbjct: 70 LKELEKSEPLLVEDDSRKVLYPIKYPDVYEAYKRAEASFWTAEEIDLGKDLHDWNNRMNE 129
Query: 130 ------SKVVV--------------TNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGIC 169
S+V+ NF + A K E K Y F+I +
Sbjct: 130 NEKFFISRVLAFFAASDGIVNENLTENFSVEA-KIPEAKLF------YGFQIMIENIHSE 182
Query: 170 RYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
Y + + K IET+P +K+KA+WALRWI D + F ER++AFA++EG+
Sbjct: 183 TYSLLIDTYVKDPKESQFLFNAIETIPQIKEKAEWALRWINDSEALFAERLVAFAAIEGV 242
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 243 FFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 276
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +EK+FIS VLAFFAASDGIVNENL E F+ E +I EA+ FYG
Sbjct: 112 EEIDLGKDLHDWNNRMNENEKFFISRVLAFFAASDGIVNENLTENFSVEAKIPEAKLFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTY+KD +E
Sbjct: 172 FQIMIENIHSETYSLLIDTYVKDPKE 197
>gi|424513798|emb|CCO66420.1| Ribonucleotide reductase subunit [Bathycoccus prasinos]
Length = 517
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 111/206 (53%), Gaps = 46/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------- 130
EPLL N RF +FP++Y IW+ YKKAEASFWTAEE+DL+
Sbjct: 195 EPLLMPNEDRFTLFPMKYPRIWEYYKKAEASFWTAEEIDLTYDYRDWITLNENEQHFITH 254
Query: 131 ---------KVVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E RA ++ + +E Y ++
Sbjct: 255 VLAFFAASDGIVLENLCVRFMKEIQVPEARAFYAFQQSIENIHSETYALLLET------- 307
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y K + I T+P VKKKADWA++WI ++ F ER++ FA VEGIFFSGSF +
Sbjct: 308 YVKDPIQKRNLFRAIHTIPTVKKKADWAMKWIESSSARFAERLVGFACVEGIFFSGSFCA 367
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLM GLTFSNELISRDE L
Sbjct: 368 IFWLKKRGLMKGLTFSNELISRDEGL 393
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 59/75 (78%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D W L +E++FI+HVLAFFAASDGIV ENL RF +E+Q+ EAR FY FQ ++EN+
Sbjct: 237 DYRDWITLNENEQHFITHVLAFFAASDGIVLENLCVRFMKEIQVPEARAFYAFQQSIENI 296
Query: 315 HSEMYSLLIDTYIKD 329
HSE Y+LL++TY+KD
Sbjct: 297 HSETYALLLETYVKD 311
>gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
brasiliensis Pb18]
Length = 325
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 110/183 (60%), Gaps = 35/183 (19%)
Query: 108 QDIWKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIR 140
+ IW+MYKKAEASFWTAEEVDLSK + + N +
Sbjct: 9 KQIWQMYKKAEASFWTAEEVDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLV 68
Query: 141 ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKK 193
+GE + +R Y F+I + Y + I K I+T+PC++K
Sbjct: 69 ERFSGEVQVPEARC-FYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRK 127
Query: 194 KADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
KADWA+RWI D+ S+F +R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD
Sbjct: 128 KADWAIRWIEDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 187
Query: 254 EDL 256
E L
Sbjct: 188 EGL 190
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 26 EEVDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 85
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 86 FQIMMENIHSETYSLLIDTYIKEPKQR 112
>gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides sp.
'lutzii' Pb01]
gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides sp.
'lutzii' Pb01]
Length = 325
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 110/183 (60%), Gaps = 35/183 (19%)
Query: 108 QDIWKMYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIR 140
+ IW+MYKKAEASFWTAEE+DLSK + + N +
Sbjct: 9 KQIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLV 68
Query: 141 ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKK 193
+GE + +R Y F+I + Y + I K I+T+PC++K
Sbjct: 69 ERFSGEVQVPEARC-FYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRK 127
Query: 194 KADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
KADWA+RWI D+ S+F +R++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD
Sbjct: 128 KADWAIRWIEDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 187
Query: 254 EDL 256
E L
Sbjct: 188 EGL 190
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 26 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 85
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 86 FQIMMENIHSETYSLLIDTYIKEPKQR 112
>gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
2588]
gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
2588]
Length = 323
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 115/206 (55%), Gaps = 40/206 (19%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------------K 131
N+E E LL++N RFV+ PI Y +W+ YK+ EASFWTAEE+DLS
Sbjct: 2 NLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDWNNLNDGERH 61
Query: 132 VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKT------- 184
+ A G + + N ++ ++L P C Y + + +T
Sbjct: 62 FITHVLAFFAASDGIVNENLAVN--FMSEVQL-PEARCFYGFQIMMENIHSETYALLIDT 118
Query: 185 --------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
IET+P V KKA WALRWI E +F ER++AFA+VEGIFFSGSF S
Sbjct: 119 YVKDPVEKDRLFHAIETVPAVTKKAKWALRWI--ENGNFAERLVAFAAVEGIFFSGSFCS 176
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 177 IFWLKKRGLMPGLTFSNELISRDEGL 202
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ WN L E++FI+HVLAFFAASDGIVNENL F EVQ+ EARCFYGF
Sbjct: 41 EEIDLSADMKDWNNLNDGERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE Y+LLIDTY+KD E+
Sbjct: 101 QIMMENIHSETYALLIDTYVKDPVEK 126
>gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana]
Length = 340
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 115/205 (56%), Gaps = 32/205 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNF 137
++E EPLL +RF +FPI+Y+ IW+MYKKAEASFWTAEEVDLS V +T+
Sbjct: 12 MEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDS 71
Query: 138 E------IRALKTGE-----EKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGK 178
E I A E + N+ Y F+I + Y +
Sbjct: 72 EKHFISHILAFFAASDGIVLENLARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETF 131
Query: 179 ITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I K IET+PC+ KKA W L WI SF R++AFA EGIFFSGSF +I
Sbjct: 132 IKDSKEKDRLFNAIETIPCISKKAKWCLDWI-QSPMSFAVRLVAFACAEGIFFSGSFCAI 190
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 191 FWLKKRGLMPGLTFSNELISRDEGL 215
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+ W LT EK+FISH+LAFFAASDGIV ENL RF +VQ+ EAR FYGF
Sbjct: 54 EEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLA-RFLNDVQVPEARAFYGF 112
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLL++T+IKD +E+
Sbjct: 113 QIAMENIHSEMYSLLLETFIKDSKEK 138
>gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa]
Length = 350
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 104/184 (56%), Gaps = 17/184 (9%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
E LL +NP RFVIFPI++ DIW YKKA ASFWT +EVDLSK
Sbjct: 46 EILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWENLNDGERHFISR 105
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVK 192
V+ F E + E + + G + I VK
Sbjct: 106 VLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEMSLLFNAIYEFEFVK 165
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
KKADWAL WIAD + + ER+IAFA+VEGIFFSGSFA+IFWLKKRGLMPGLT SNELISR
Sbjct: 166 KKADWALCWIADIKAPYAERLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISR 225
Query: 253 DEDL 256
DE L
Sbjct: 226 DEGL 229
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRD 265
S GE ++A + F F I+ K+ L T +S+D W L
Sbjct: 41 CESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKD--YRDWENLNDG 98
Query: 266 EKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDT 325
E++FIS VLAFFAASDGIVNENLV RF+QEVQ+ EAR FYGFQI +ENVHSEM SLL +
Sbjct: 99 ERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEM-SLLFNA 157
>gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
Length = 349
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 123/210 (58%), Gaps = 43/210 (20%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRAL 142
VQ +V EP+L ++ RFV+FPI++ DIW+ YK EASFWTAEE+DL + + + +L
Sbjct: 2 VQTDV-IEPILEEDKGRFVLFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMK---DWNSL 57
Query: 143 KTGEEK-ASHSR----------NEP----YLFRIKLAPGGICRYKVKKGGKITGGKT--- 184
GE SH NE +L ++ A C Y + + +T
Sbjct: 58 NDGERHFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAK-CFYGFQVMMENIHSETYSL 116
Query: 185 ------------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
I+T+PCV+KKA+WALRWI + SF ER+IAFA VEGIFFSG
Sbjct: 117 LIDTYIKDPVEKDRLLNAIDTIPCVQKKAEWALRWI--DNGSFAERLIAFAVVEGIFFSG 174
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SF SI+WLKKRG+MPGLTFSNELISRDE L
Sbjct: 175 SFCSIYWLKKRGMMPGLTFSNELISRDEGL 204
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D+ WN L E++FISHVLAFFAASDGIVNENL F EVQ EA+CFYGF
Sbjct: 43 EEIDLGQDMKDWNSLNDGERHFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YSLLIDTYIKD E+
Sbjct: 103 QVMMENIHSETYSLLIDTYIKDPVEK 128
>gi|393911948|gb|EFO23522.2| ribonucleoside-diphosphate reductase [Loa loa]
Length = 365
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 110/199 (55%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
E LL +NP RFVIFPI++ DIW YKKA ASFWT +EVDLSK
Sbjct: 46 EILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWENLNDGERHFISR 105
Query: 133 VVTNFEIRALKTGEEKASHSRNEP--------YLFRI-------KLAPGGICRYKVKKGG 177
V+ F E + E Y F+I ++ I Y +
Sbjct: 106 VLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEMYSKMIDTYIRDQKQ 165
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K I VKKKADWAL WIAD + + ER+IAFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 166 KSLLFNAIYEFEFVKKKADWALCWIADIKAPYAERLIAFAAVEGIFFSGSFAAIFWLKKR 225
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLT SNELISRDE L
Sbjct: 226 GLMPGLTHSNELISRDEGL 244
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRD 265
S GE ++A + F F I+ K+ L T +S+D W L
Sbjct: 41 CESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKD--YRDWENLNDG 98
Query: 266 EKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDT 325
E++FIS VLAFFAASDGIVNENLV RF+QEVQ+ EAR FYGFQI +ENVHSEMYS +IDT
Sbjct: 99 ERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEMYSKMIDT 158
Query: 326 YIKDQEER 333
YI+DQ+++
Sbjct: 159 YIRDQKQK 166
>gi|444727943|gb|ELW68416.1| Ribonucleoside-diphosphate reductase subunit M2 B [Tupaia
chinensis]
Length = 365
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 116/215 (53%), Gaps = 51/215 (23%)
Query: 77 KQVSAPVQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-- 131
K++S+ EN T EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 8 KRLSSDTSENEVTSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDL 67
Query: 132 ---------------VVVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGI 168
++ F E E+ S P Y F+I +
Sbjct: 68 PHWNKLKPDEKYFISHILAFFAASDGIVNENLVERFSQEVQIPEARCFYGFQILIENVHS 127
Query: 169 CRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEG 221
Y + I K IETMP VKKKADWALRWIAD S+FG
Sbjct: 128 EMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFG----------- 176
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 177 -----SFAAIFWLKKRGLMPGLTFSNELISRDEGL 206
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQI EARCFYGF
Sbjct: 59 EEVDLSKDLPHWNKLKPDEKYFISHILAFFAASDGIVNENLVERFSQEVQIPEARCFYGF 118
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 119 QILIENVHSEMYSLLIDTYIRDPKKR 144
>gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca
mulatta]
Length = 704
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 78/89 (87%)
Query: 245 FSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
++ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCF
Sbjct: 447 WTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF 506
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 507 YGFQIAMENIHSEMYSLLIDTYIKDPKER 535
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/71 (87%), Positives = 68/71 (95%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 541 AIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 600
Query: 244 TFSNELISRDE 254
TFSNELISRDE
Sbjct: 601 TFSNELISRDE 611
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 44/48 (91%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 411 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 458
>gi|367007082|ref|XP_003688271.1| hypothetical protein TPHA_0N00560 [Tetrapisispora phaffii CBS 4417]
gi|357526579|emb|CCE65837.1| hypothetical protein TPHA_0N00560 [Tetrapisispora phaffii CBS 4417]
Length = 398
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 119/201 (59%), Gaps = 35/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD-------------------LS 130
EPLL + +R ++ PI+Y DI++ YK+AEASFWTAEE+D +S
Sbjct: 73 EPLLNKDKKRHLVHPIKYPDIYETYKRAEASFWTAEEIDLSKDLYDWNERMNSNERFFIS 132
Query: 131 KVV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+V+ + N + + E + +R Y F+I + Y + I
Sbjct: 133 RVLAFFAASDGIVNENLTENFSVEIQVPEARY-FYGFQIMIENIHSETYSLLIDTYIKDP 191
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K I+ +P +K+KA+WALRWI D+ + FGER++AFAS+EG+FFSGSFASIFWLK
Sbjct: 192 KESSFLFNAIDYIPQIKEKAEWALRWINDDEALFGERLVAFASIEGVFFSGSFASIFWLK 251
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGLTFSNELI RDE L
Sbjct: 252 KRGLMPGLTFSNELICRDEGL 272
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++ +E++FIS VLAFFAASDGIVNENL E F+ E+Q+ EAR FYG
Sbjct: 108 EEIDLSKDLYDWNERMNSNERFFISRVLAFFAASDGIVNENLTENFSVEIQVPEARYFYG 167
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 168 FQIMIENIHSETYSLLIDTYIKDPKE 193
>gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group]
gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group]
gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa
Japonica Group]
gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group]
Length = 345
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 116/207 (56%), Gaps = 48/207 (23%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI+Y IW+ YKKA ASFWTAEEVDLS
Sbjct: 21 EPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFVS 80
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N R + + E +A + +E Y ++
Sbjct: 81 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLET----YI 136
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
R V+K + I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF
Sbjct: 137 RDDVEKDRLF---RAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFC 192
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 193 AIFWLKKRGLMPGLTFSNELISRDEGL 219
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++F+SHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 54 TAEEVDLSADARHWDAALSPDERHFVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 113
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 114 YGFQIAIENIHSEMYSLLLETYIRDDVEK 142
>gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
Length = 408
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 36/205 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EPLL RF +FP++Y +W++YKKA+ S WTAEEVDLSK
Sbjct: 91 EYEPLLAPTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKTLNENEKKFI 150
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E+++ + A NE + + I +Y
Sbjct: 151 KYILAFFAGSDGIVFENINNNFADEVQSSEARSFYAYQCHNE--MVHGETYSKLIDKYIK 208
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC++KKADWA++W ++ SF ER+ AFA VEGIFFSGSF +I+W
Sbjct: 209 DGAEKKQLFEAIQTVPCIQKKADWAMKWFDTKSRSFAERLFAFACVEGIFFSGSFCAIYW 268
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
LKKRGLMPGL FSNELISRDE L
Sbjct: 269 LKKRGLMPGLCFSNELISRDEGLHQ 293
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +DL W L +EK FI ++LAFFA SDGI
Sbjct: 106 FPLKYPHLWELYKKAQMSNWT--AEEVDLSKDLDDWKTLNENEKKFIKYILAFFAGSDGI 163
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQ +EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 164 VFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLIDKYIKDGAEK 213
>gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans
var. neoformans JEC21]
gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 430
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 132/249 (53%), Gaps = 54/249 (21%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQY 107
LP N++K L+N S +P K+ ++ +E++ LR++ RFV+FPI+Y
Sbjct: 64 LP-NSIKSLSNERSDSNKGGNPAKEGKVTRKFPEEEEEDI-----LRESESRFVLFPIKY 117
Query: 108 QDIWKMYKKAEASFWTAEEVD---------------------------------LSKVVV 134
+IW+ YK A+ASFWTAEE+D + + +V
Sbjct: 118 NEIWQAYKHAQASFWTAEELDFGHDLIDWHDRMTEQERFFILRILAFFAASDGIVGENIV 177
Query: 135 TNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIET 187
+ F E RA + + +E Y I+ Y K + +
Sbjct: 178 SQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIET-------YVRDAQEKDFLFRGMTN 230
Query: 188 MPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSN 247
+PC+K+KADWAL++I DE F R++AFA VEGIFFSGSFA+IFWLKKRGLMPGLTFSN
Sbjct: 231 IPCIKQKADWALKYITDELP-FRTRLVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSN 289
Query: 248 ELISRDEDL 256
ELISRDE +
Sbjct: 290 ELISRDEGM 298
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 255 DLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL W +++T E++FI +LAFFAASDGIV EN+V +F EVQI EAR FY FQ +E
Sbjct: 142 DLIDWHDRMTEQERFFILRILAFFAASDGIVGENIVSQFALEVQIAEARAFYSFQSMIEQ 201
Query: 314 VHSEMYSLLIDTYIKDQEER 333
VHSE YSLLI+TY++D +E+
Sbjct: 202 VHSETYSLLIETYVRDAQEK 221
>gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 116/223 (52%), Gaps = 47/223 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YKKAE+S WT E + L
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E+R + + +E Y I
Sbjct: 77 VLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLID-------T 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKL 231
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 64/79 (81%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D++ W KL E++FI HVLAFFAASDGIV ENL ERF EVQ+ E RCFYGFQIAMEN+
Sbjct: 59 DMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENI 118
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE YS+LIDTY+ D +E+
Sbjct: 119 HSETYSVLIDTYVVDPDEK 137
>gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276]
gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus
gattii WM276]
Length = 430
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 134/250 (53%), Gaps = 56/250 (22%)
Query: 48 LPQNTLKDLTNNLQQSKLSDSPI-KDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQ 106
LP+ +++ L+N S P KDK +K + ++ +LR++ RFV+FPI+
Sbjct: 64 LPR-SIESLSNERSDSNKGRKPAGKDKMPMKFLEEEEED------ILRESDSRFVLFPIK 116
Query: 107 YQDIWKMYKKAEASFWTAEEVD---------------------------------LSKVV 133
Y +IW+ YK+A+ASFWTAEE+D + + +
Sbjct: 117 YNEIWQAYKRAQASFWTAEELDFGHDLIDWHDRMTEQERFFILRILAFFAASDGIVGENI 176
Query: 134 VTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE 186
V+ F E RA + + +E Y I+ Y K + +E
Sbjct: 177 VSQFSLEVQIAEARAFYSFQSMIEQVHSETYSLLIET-------YVRDAQEKDFLFRGME 229
Query: 187 TMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFS 246
+PC+K+KADWAL++I DE F R++AFA VEGIFFSGSFA+IFWLKKRGLMPGLTFS
Sbjct: 230 NIPCIKQKADWALKYITDELP-FRTRLVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFS 288
Query: 247 NELISRDEDL 256
NELISRDE +
Sbjct: 289 NELISRDEGM 298
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 255 DLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL W +++T E++FI +LAFFAASDGIV EN+V +F+ EVQI EAR FY FQ +E
Sbjct: 142 DLIDWHDRMTEQERFFILRILAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQSMIEQ 201
Query: 314 VHSEMYSLLIDTYIKDQEER 333
VHSE YSLLI+TY++D +E+
Sbjct: 202 VHSETYSLLIETYVRDAQEK 221
>gi|410927806|ref|XP_003977331.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like,
partial [Takifugu rubripes]
Length = 179
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 96/145 (66%), Gaps = 11/145 (7%)
Query: 198 ALRWIADEASSFGERVIAFASVEG---------IFFSGSFASIFWLKKRGLMPGLTFSNE 248
A R +AD AS +R VE + F + I+ + K+ ++ E
Sbjct: 25 ARRILADPASKPVKRRTGEKEVEPLLKENPRRFVIFPIKYQDIWQMYKKA--EASFWTAE 82
Query: 249 LISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
+ +DL HW L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGFQ
Sbjct: 83 EVDLSKDLQHWESLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQ 142
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
IAMEN+HSEMYSLLIDTYIKD ER
Sbjct: 143 IAMENIHSEMYSLLIDTYIKDPSER 167
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 47/55 (85%), Gaps = 3/55 (5%)
Query: 80 SAPVQENV---ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
S PV+ E EPLL++NPRRFVIFPI+YQDIW+MYKKAEASFWTAEEVDLSK
Sbjct: 34 SKPVKRRTGEKEVEPLLKENPRRFVIFPIKYQDIWQMYKKAEASFWTAEEVDLSK 88
>gi|363754041|ref|XP_003647236.1| hypothetical protein Ecym_6011 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890873|gb|AET40419.1| hypothetical protein Ecym_6011 [Eremothecium cymbalariae
DBVPG#7215]
Length = 436
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 131/236 (55%), Gaps = 50/236 (21%)
Query: 64 KLSDSPIKDKSTLK--QVSA-PVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
KLS + + K LK QV ++E + EPLL +N RRFV+FPI+Y DIW+ YK+AEAS
Sbjct: 82 KLSQAAKEHKEFLKSHQVQRHKLKELEKDEPLLMENKRRFVLFPIKYHDIWQAYKRAEAS 141
Query: 121 ---------------------------------FWTAEEVDLSKVVVTNFEIRALKTGEE 147
F+ A + +++ +V NF ++ E
Sbjct: 142 FWTAEEIDLSKDIHDWNNRMTDNERYFISRVLAFFAASDGIVNENLVENFSAE-VQVPEA 200
Query: 148 KASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALR 200
K Y F+I + Y + I K +ET+P +K+KA+WA+R
Sbjct: 201 KCF------YGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAVETIPEIKEKAEWAIR 254
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WI DE + FGER++AFA+VEGIFFSGSFA+IFWLKK+GLMPGLTFSNELI RDE L
Sbjct: 255 WIQDEDALFGERLVAFAAVEGIFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGL 310
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++T +E+YFIS VLAFFAASDGIVNENLVE F+ EVQ+ EA+CFYG
Sbjct: 146 EEIDLSKDIHDWNNRMTDNERYFISRVLAFFAASDGIVNENLVENFSAEVQVPEAKCFYG 205
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTYIKD +E
Sbjct: 206 FQIMMENIHSETYSLLIDTYIKDPKE 231
>gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
Length = 339
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 114/207 (55%), Gaps = 48/207 (23%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI++ IW+ YKKA ASFWTAEEVDLS
Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWDEALSPDERHFIS 74
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N R + + E +A + +E Y ++
Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLE------- 127
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
Y K + I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF
Sbjct: 128 TYIRDDAEKDRLFRAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFC 186
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 187 AIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW++ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVDLSSDARHWDEALSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDDAEK 136
>gi|413953641|gb|AFW86290.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 115/207 (55%), Gaps = 48/207 (23%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI++ IW+ YKKA ASFWTAEEVDLS
Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDEALSPDERHFIS 74
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N R + + E +A + +E Y L
Sbjct: 75 HVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQIAIENIHSEMY----SLLLETYI 130
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
R V+K + I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF
Sbjct: 131 RDHVEKDRLF---RAIDTVPAVRRKADWAMRWI-DGGERFAERIVAFACVEGIFFSGSFC 186
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 187 AIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW++ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVDLSADARHWDEALSPDERHFISHVLAFFAASDGIVLENLASRFMTDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDHVEK 136
>gi|212723480|ref|NP_001131892.1| uncharacterized protein LOC100193273 [Zea mays]
gi|194692834|gb|ACF80501.1| unknown [Zea mays]
gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
gi|413944298|gb|AFW76947.1| Ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 115/208 (55%), Gaps = 48/208 (23%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EPLL ++ RF +FPI++ IW+ YKKA ASFWTAEEVDLS
Sbjct: 14 VEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDEALSPDERHFI 73
Query: 132 ------------VVVTNFEIRAL---KTGEEKASHS--------RNEPYLFRIKLAPGGI 168
+V+ N R + + E +A + +E Y L
Sbjct: 74 SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMY----SLLLETY 129
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
R V+K + I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF
Sbjct: 130 IRDDVEKDRLF---RAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSF 185
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 186 CAIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW++ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVDLSADARHWDEALSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDDVEK 136
>gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus
salmonis]
Length = 335
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 115/200 (57%), Gaps = 35/200 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
+ E +L N ++V+FPI Y+DIW MYKKA A+FWT EEVDLSK +
Sbjct: 14 KNEIILTPNNSKYVMFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDWAKLNKDEKHFI 73
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+ N + E + + +R+ Y F+I + Y + I
Sbjct: 74 SNVLAFFAASDGIVNENLLERFASEVQIAEARS-FYGFQIMIENIHSEMYSLLIDTYIED 132
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K +I T+ CVKKKA+WALRWI + F R++AFA+VEGIFFSGSFAS+FWL
Sbjct: 133 DKEKDKLFNSILTIECVKKKAEWALRWITGD-KPFATRLVAFAAVEGIFFSGSFASLFWL 191
Query: 235 KKRGLMPGLTFSNELISRDE 254
KKRGLMPGLTFSNELISRDE
Sbjct: 192 KKRGLMPGLTFSNELISRDE 211
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F + I+++ K+ L T E + +DL W KL +DEK+FIS+VLAFFAASD
Sbjct: 27 VMFPIVYKDIWFMYKKALATFWTV--EEVDLSKDLMDWAKLNKDEKHFISNVLAFFAASD 84
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENL+ERF EVQI EAR FYGFQI +EN+HSEMYSLLIDTYI+D +E+
Sbjct: 85 GIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDTYIEDDKEK 136
>gi|346644878|ref|NP_001231111.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Bos
taurus]
gi|296482362|tpg|DAA24477.1| TPA: ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus]
Length = 341
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 77/87 (88%)
Query: 247 NELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
+E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYG
Sbjct: 56 SEPVDLSKDIQHWEALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYG 115
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 116 FQIAMENIHSEMYSLLIDTYIKDSKER 142
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMPCVKKKADWALRWI D+A+++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 148 AIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 207
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 208 TFSNELISRDEGL 220
>gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima]
Length = 300
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 107/177 (60%), Gaps = 34/177 (19%)
Query: 113 MYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGE 146
MYKKAEASFWTAEEVDLSK + + N + + E
Sbjct: 1 MYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKE 60
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWAL 199
+ + +R Y F+I + Y + I + IETMPCVK+KADWA+
Sbjct: 61 VQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAM 119
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
RWI D++SS+ ERV+AFA+VEGIFFSGSFASIFWLKKRG+MPGLTFSNELISRDE L
Sbjct: 120 RWINDDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGL 176
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 78/86 (90%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++HW L ++EK+FISHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYGF
Sbjct: 13 EEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGF 72
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 73 QIAMENIHSEMYSLLIDTYIKDPQER 98
>gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus]
Length = 338
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 77/87 (88%)
Query: 247 NELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
+E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYG
Sbjct: 53 SEPVDLSKDIQHWEALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYG 112
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 113 FQIAMENIHSEMYSLLIDTYIKDSKER 139
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMPCVKKKADWALRWI D+A+++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 145 AIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 204
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 205 TFSNELISRDEGL 217
>gi|424842989|ref|ZP_18267614.1| ribonucleotide reductase, beta subunit [Saprospira grandis DSM
2844]
gi|395321187|gb|EJF54108.1| ribonucleotide reductase, beta subunit [Saprospira grandis DSM
2844]
Length = 323
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 114/206 (55%), Gaps = 47/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------- 130
EP+L++N +RFV+FPIQ+ IW+M K+A A FWT +E+DL+
Sbjct: 5 EPILQENDQRFVLFPIQHDAIWEMRKQALACFWTTDEIDLAADLHDWKKLSANEQHFIKQ 64
Query: 131 -------------KVVVTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ +V NF E R+ + + E Y I
Sbjct: 65 VLAFFAASDGIVNENLVLNFYRDVQLAEARSFYATQIQIEDIHAETYSLLID-------T 117
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y K ++T+PCV++KA WA++WI +EA SF R+IAFA+VEGIFFSGSF S
Sbjct: 118 YIQDSAEKNELFNAMQTLPCVQRKAKWAIKWI-EEAPSFAHRLIAFAAVEGIFFSGSFCS 176
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
I+WLKKRG+MPGLTFSNELISRDE +
Sbjct: 177 IYWLKKRGIMPGLTFSNELISRDEGM 202
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F +I+ ++K+ L ++ + I DL W KL+ +E++FI VLAFFAASD
Sbjct: 16 VLFPIQHDAIWEMRKQAL--ACFWTTDEIDLAADLHDWKKLSANEQHFIKQVLAFFAASD 73
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENLV F ++VQ+ EAR FY QI +E++H+E YSLLIDTYI+D E+
Sbjct: 74 GIVNENLVLNFYRDVQLAEARSFYATQIQIEDIHAETYSLLIDTYIQDSAEK 125
>gi|379729068|ref|YP_005321264.1| ribonucleoside-diphosphate reductase small chain [Saprospira
grandis str. Lewin]
gi|378574679|gb|AFC23680.1| ribonucleoside-diphosphate reductase small chain [Saprospira
grandis str. Lewin]
Length = 323
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 114/206 (55%), Gaps = 47/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------------- 130
EP+L++N +RFV+FPIQ+ IW+M K+A A FWT +E+DL+
Sbjct: 5 EPILQENDQRFVLFPIQHDAIWEMRKQALACFWTTDEIDLAADLHDWKKLSANEQHFIKH 64
Query: 131 -------------KVVVTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+ +V NF E R+ + + E Y I
Sbjct: 65 VLAFFAASDGIVNENLVLNFYRDVQLAEARSFYATQIQIEDIHAETYSLLID-------T 117
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y K ++T+PCV++KA WA++WI +EA SF R++AFA+VEGIFFSGSF S
Sbjct: 118 YIQDSAEKNALFNAMQTLPCVQRKAKWAIKWI-EEAPSFAHRLVAFAAVEGIFFSGSFCS 176
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
I+WLKKRG+MPGLTFSNELISRDE +
Sbjct: 177 IYWLKKRGIMPGLTFSNELISRDEGM 202
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F +I+ ++K+ L ++ + I DL W KL+ +E++FI HVLAFFAASD
Sbjct: 16 VLFPIQHDAIWEMRKQAL--ACFWTTDEIDLAADLHDWKKLSANEQHFIKHVLAFFAASD 73
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENLV F ++VQ+ EAR FY QI +E++H+E YSLLIDTYI+D E+
Sbjct: 74 GIVNENLVLNFYRDVQLAEARSFYATQIQIEDIHAETYSLLIDTYIQDSAEK 125
>gi|357541912|gb|AET84674.1| ribonucleotide reductase [Ostreococcus lucimarinus virus OlV4]
Length = 364
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 114/205 (55%), Gaps = 36/205 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EPLL RF +FP++Y ++W++YKKA+ S WTAEEVDLSK
Sbjct: 47 EYEPLLAPTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKTLNENEQKFI 106
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E+++ + A NE + + I +Y
Sbjct: 107 KYILAFFAGSDGIVFENINNNFADEVQSSEARSFYAYQCHNE--MVHGETYSKLIDKYIK 164
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC++KKA+WA++W ++ SF ER+ AFA VEGIFFSGSF +I+W
Sbjct: 165 DGAEKKQLFEAIQTVPCIQKKANWAMKWFDTKSRSFAERLFAFACVEGIFFSGSFCAIYW 224
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
LKKRGLMPGL FSNELISRDE L
Sbjct: 225 LKKRGLMPGLCFSNELISRDEGLHQ 249
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +D+ W L +E+ FI ++LAFFA SDGI
Sbjct: 62 FPLKYPELWELYKKAQMSNWT--AEEVDLSKDMDDWKTLNENEQKFIKYILAFFAGSDGI 119
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQ +EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 120 VFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLIDKYIKDGAEK 169
>gi|401881690|gb|EJT45980.1| ribonucleotide reductase small subunit [Trichosporon asahii var.
asahii CBS 2479]
gi|406697724|gb|EKD00978.1| ribonucleotide reductase small subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 455
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 115/198 (58%), Gaps = 34/198 (17%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT----------NFEIRA 141
+LR+ RFV+FPI+Y+DIW YK+A+ASFWTAEE+DL+K + F +R
Sbjct: 129 ILRETSDRFVLFPIKYRDIWLAYKQAQASFWTAEELDLAKDLYDWNERMNERERFFILRI 188
Query: 142 LK--------TGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVKKGGK 178
L GE S E Y F+ + I Y K K
Sbjct: 189 LAFFASSDGIVGENLISQFATEVQIAEARAFYAFQTMIEQVHAETYSLLIETYVQDKDEK 248
Query: 179 ITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRG 238
K +E +PC++KKADWA+++I D+ F R+IAFA VEGIFFSGSFA+IFWLKKRG
Sbjct: 249 DFLFKGMENIPCIQKKADWAMKYITDDVP-FRIRLIAFACVEGIFFSGSFAAIFWLKKRG 307
Query: 239 LMPGLTFSNELISRDEDL 256
LM GLTFSNELISRDE L
Sbjct: 308 LMGGLTFSNELISRDEGL 325
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL WN ++ E++FI +LAFFA+SDGIV ENL+ +F EVQI EAR FY FQ +E
Sbjct: 168 KDLYDWNERMNERERFFILRILAFFASSDGIVGENLISQFATEVQIAEARAFYAFQTMIE 227
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
VH+E YSLLI+TY++D++E+
Sbjct: 228 QVHAETYSLLIETYVQDKDEK 248
>gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 116/223 (52%), Gaps = 47/223 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YKKA ++FW E + L
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ NF E+R + + +E Y I
Sbjct: 77 VLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDT------- 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKL 231
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 63/79 (79%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D++ W KL E++FI HVLAFFAA DGIV EN V+RF EVQ+ E RCFYGFQIAMEN+
Sbjct: 59 DMTDWEKLDDGERHFIKHVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENI 118
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE YS+LIDTY+ D +E+
Sbjct: 119 HSETYSVLIDTYVVDPDEK 137
>gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative;
ribonucleotide reductase r2 subunit 1, putative;
ribonucleotide reductase small subunit 1, putative
[Candida dubliniensis CD36]
gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative
[Candida dubliniensis CD36]
Length = 413
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 119/219 (54%), Gaps = 44/219 (20%)
Query: 73 KSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK- 131
+ LKQ+ A EPLL +N RR+V+FPI+Y +IW YKKAEASFWTAEE+DLSK
Sbjct: 80 RHKLKQLEAE-------EPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKD 132
Query: 132 -----------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
V+ F GE + E L K G + ++
Sbjct: 133 LDDWNNKLNENERYFVSRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYG--FQIMME 190
Query: 175 KGGKITGGKTIETMPCVKKKADW-----------------ALRWIADEASSFGERVIAFA 217
T IET ++AD+ A++WI D+ + +GER++AFA
Sbjct: 191 NIHSETYSLLIETYIKDPQEADYLFNAIANIPCIQKKADWAIKWIQDDEALYGERLVAFA 250
Query: 218 SVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 251 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 289
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN KL +E+YF+S VLAFFAASDGIV ENL+E F+ EVQ+ EA+ FYG
Sbjct: 125 EEIDLSKDLDDWNNKLNENERYFVSRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYG 184
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLI+TYIKD +E
Sbjct: 185 FQIMMENIHSETYSLLIETYIKDPQE 210
>gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
tropicalis MYA-3404]
gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
tropicalis MYA-3404]
Length = 387
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 118/206 (57%), Gaps = 35/206 (16%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD-------------- 128
++E+ EPLLR++P R +FPI+Y +IW YKK+ ASFWTAEE+D
Sbjct: 57 LKESEMNEPLLREDPSRRTVFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWENKMNK 116
Query: 129 -----LSKVV--------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKK 175
+S+V+ + N + E K +++ Y F+I + Y +
Sbjct: 117 DERFFISRVLAFFAASDGIVNENLVENFCTEVKLPEAKS-VYKFQIMMENIHSETYSLLI 175
Query: 176 GGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
K I+ + + +KADWA+RWI DE + F ER++AFA++EGIFFSGSF
Sbjct: 176 ETYFKDPKEADFLFNAIDNIKYIGEKADWAIRWIQDEEALFAERLVAFAAIEGIFFSGSF 235
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDE 254
ASIFWLKKRGLMPGLTFSNELI RDE
Sbjct: 236 ASIFWLKKRGLMPGLTFSNELICRDE 261
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D W NK+ +DE++FIS VLAFFAASDGIVNENLVE F EV++ EA+ Y
Sbjct: 99 EEIDLSKDFDDWENKMNKDERFFISRVLAFFAASDGIVNENLVENFCTEVKLPEAKSVYK 158
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLI+TY KD +E
Sbjct: 159 FQIMMENIHSETYSLLIETYFKDPKE 184
>gi|357124601|ref|XP_003563986.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
[Brachypodium distachyon]
Length = 339
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 116/207 (56%), Gaps = 48/207 (23%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI++ IW+ YKKA ASFWTAEEVDLS
Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWDTTLSNDERHFVS 74
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N R + + E +A + +E Y I+
Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLIE----TYI 130
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
R V+K + ++T+P V++KA+WA+RWI D F ER++AFA VEGIFFSGSF
Sbjct: 131 REDVEKDRLF---RAVDTIPAVRRKAEWAMRWI-DGGERFAERLVAFACVEGIFFSGSFC 186
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 187 AIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++F+SHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVDLSSDARHWDTTLSNDERHFVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLLI+TYI++ E+
Sbjct: 108 YGFQIAIENIHSEMYSLLIETYIREDVEK 136
>gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
albicans WO-1]
Length = 413
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 119/219 (54%), Gaps = 44/219 (20%)
Query: 73 KSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK- 131
+ LKQ+ A EPLL +N RR+V+FPI+Y +IW YKKAEASFWTAEE+DLSK
Sbjct: 80 RHKLKQLEAE-------EPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKD 132
Query: 132 -----------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
V+ F GE + E L K G + ++
Sbjct: 133 LDDWNNKLNENERYFISRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYG--FQIMME 190
Query: 175 KGGKITGGKTIETMPCVKKKADW-----------------ALRWIADEASSFGERVIAFA 217
T IET ++AD+ A++WI D+ + +GER++AFA
Sbjct: 191 NIHSETYSLLIETYIKDPQEADYLFNAIANIPCIQKKADWAIKWIQDDEALYGERLVAFA 250
Query: 218 SVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 251 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 289
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN KL +E+YFIS VLAFFAASDGIV ENL+E F+ EVQ+ EA+ FYG
Sbjct: 125 EEIDLSKDLDDWNNKLNENERYFISRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYG 184
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLI+TYIKD +E
Sbjct: 185 FQIMMENIHSETYSLLIETYIKDPQE 210
>gi|444318509|ref|XP_004179912.1| hypothetical protein TBLA_0C05960 [Tetrapisispora blattae CBS 6284]
gi|387512953|emb|CCH60393.1| hypothetical protein TBLA_0C05960 [Tetrapisispora blattae CBS 6284]
Length = 393
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 117/191 (61%), Gaps = 25/191 (13%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD---------LSKVV------- 133
EPLL + +R ++FPI+Y DI++ YK+AEASFWTAE + +S+V+
Sbjct: 79 EPLLNKDKKRKILFPIEYPDIYEAYKRAEASFWTAEGNNRLNANERFFISRVLAFFAASD 138
Query: 134 -VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TI 185
+ N + + E + +R Y F+I + Y + I K I
Sbjct: 139 GIVNENLNENFSVEVQVPEAR-LFYGFQIMIENIHSETYSLLIDTYIKDPKESQFLFDAI 197
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
+T+P +K+KA+WA+RWI D + + ER++AFAS+EGIFFSGSFASIFWLKKRGLMPGLTF
Sbjct: 198 QTIPQIKEKAEWAIRWINDSDALYAERLVAFASIEGIFFSGSFASIFWLKKRGLMPGLTF 257
Query: 246 SNELISRDEDL 256
SNELI RDE L
Sbjct: 258 SNELICRDEGL 268
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 62/73 (84%)
Query: 260 NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMY 319
N+L +E++FIS VLAFFAASDGIVNENL E F+ EVQ+ EAR FYGFQI +EN+HSE Y
Sbjct: 117 NRLNANERFFISRVLAFFAASDGIVNENLNENFSVEVQVPEARLFYGFQIMIENIHSETY 176
Query: 320 SLLIDTYIKDQEE 332
SLLIDTYIKD +E
Sbjct: 177 SLLIDTYIKDPKE 189
>gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis]
Length = 369
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L DE++FISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 37 EEVDLSKDLQHWESLKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIK+ ER
Sbjct: 97 QIAMENIHSEMYSLLIDTYIKEPSER 122
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/42 (90%), Positives = 42/42 (100%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLL++NPRRFVIFPIQYQD+W+MYKKAEASFWTAEEVDLSK
Sbjct: 2 EPLLKENPRRFVIFPIQYQDLWQMYKKAEASFWTAEEVDLSK 43
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGER 212
IET+PCVKKKADWAL WI ++ +S+GER
Sbjct: 128 AIETLPCVKKKADWALNWIGNQKASYGER 156
>gi|356927835|gb|AET42625.1| ribonucleoside-diphosphate reductase small subunit [Emiliania
huxleyi virus 202]
Length = 325
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 114/200 (57%), Gaps = 33/200 (16%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------K 131
+EPLL DNP RF +FPI ++DI++ YKKAEAS W E+D+S K
Sbjct: 2 SEPLLNDNPDRFALFPIVHKDIYEEYKKAEASIWGVAEIDISTDKIDWPKLTENEQHFIK 61
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG- 182
++ F E A++ E Y F+I + Y + +
Sbjct: 62 YILAFFATADGVVLENLATNFATEVQYPEARCFYNFQIFIETVHAETYAMMLQTFVDDRD 121
Query: 183 ------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
+ I T+P +K+KADWAL+WI+ + SF ER+IAFA VEGIFFSG+F +IFWLKK
Sbjct: 122 ELRSLFRAIHTIPSIKQKADWALKWISSD-RSFAERLIAFAVVEGIFFSGAFCAIFWLKK 180
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 181 RGLMPGLTFSNELISRDEGL 200
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 56/74 (75%)
Query: 259 WNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEM 318
W KLT +E++FI ++LAFFA +DG+V ENL F EVQ EARCFY FQI +E VH+E
Sbjct: 49 WPKLTENEQHFIKYILAFFATADGVVLENLATNFATEVQYPEARCFYNFQIFIETVHAET 108
Query: 319 YSLLIDTYIKDQEE 332
Y++++ T++ D++E
Sbjct: 109 YAMMLQTFVDDRDE 122
>gi|131840053|ref|YP_001096062.1| unnamed protein product [Cyprinid herpesvirus 3]
gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3]
gi|109706628|gb|ABG42854.1| ribonucleotide reductase subunit 2 [Cyprinid herpesvirus 3]
gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3]
Length = 335
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 110/199 (55%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLL + RF + I++QDIW MYKKA+ S WTAEE+DL+K
Sbjct: 14 EPLLAPSNSRFTLDVIEHQDIWSMYKKAQFSNWTAEEIDLAKDTAGWESLSENEKFFLKN 73
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKITGG------- 182
++ F E A+ E F + G I + K+
Sbjct: 74 ILAFFAASDGIVNENLATRFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILDPVE 133
Query: 183 -----KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K +ETMPC+KKKADWAL WI ++FGER++AF +VEGIFFSG+FASIFWLK++
Sbjct: 134 RNGLFKAMETMPCIKKKADWALNWIESPDATFGERLVAFTAVEGIFFSGAFASIFWLKQK 193
Query: 238 GLMPGLTFSNELISRDEDL 256
MPGLTFSNELISRDE L
Sbjct: 194 VSMPGLTFSNELISRDEGL 212
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 70/92 (76%), Gaps = 3/92 (3%)
Query: 245 FSN---ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEA 301
FSN E I +D + W L+ +EK+F+ ++LAFFAASDGIVNENL RF +EVQ EA
Sbjct: 43 FSNWTAEEIDLAKDTAGWESLSENEKFFLKNILAFFAASDGIVNENLATRFMKEVQYFEA 102
Query: 302 RCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
RCFYGFQIA+ENVHSE+Y+ L++TYI D ER
Sbjct: 103 RCFYGFQIAIENVHSEVYAKLLNTYILDPVER 134
>gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c]
gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
Length = 269
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DLS W+KL DEK+FI H+LAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 13 EEVDLSKDLSDWDKLKDDEKHFIKHILAFFAASDGIVNENLVERFSQEVQITEARCFYGF 72
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYSLLIDTYI+D +ER
Sbjct: 73 QIAMENVHSEMYSLLIDTYIRDSDER 98
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 104/177 (58%), Gaps = 34/177 (19%)
Query: 113 MYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGE 146
MYKKAEASFWT EEVDLSK + + N + + E
Sbjct: 1 MYKKAEASFWTVEEVDLSKDLSDWDKLKDDEKHFIKHILAFFAASDGIVNENLVERFSQE 60
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWAL 199
+ + +R Y F+I + Y + I IET+PC+KKKADWAL
Sbjct: 61 VQITEARC-FYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADWAL 119
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+WI+ +++F ER++AFA+VEGIFFSGSFASIFWLKKRGL+PGLTFSNELISRDE L
Sbjct: 120 KWISSNSANFAERIVAFAAVEGIFFSGSFASIFWLKKRGLLPGLTFSNELISRDEGL 176
>gi|426334717|ref|XP_004028887.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Gorilla
gorilla gorilla]
Length = 315
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDPKER 190
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/45 (88%), Positives = 43/45 (95%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 67 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSK 111
>gi|338728582|ref|XP_003365702.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 2 [Equus caballus]
Length = 299
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 76/84 (90%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL HWNKLT DEKYFISHVLAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI
Sbjct: 17 VDLSKDLPHWNKLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQI 76
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+ENVHSEMYSLLIDTYI+D ++R
Sbjct: 77 LIENVHSEMYSLLIDTYIRDPKKR 100
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWAL+WIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 106 AIETMPYVKKKADWALQWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 165
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 166 TFSNELISRDEGL 178
>gi|402878877|ref|XP_003903090.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 2 [Papio anubis]
Length = 297
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 104/176 (59%), Gaps = 32/176 (18%)
Query: 113 MYKKAEASFWTAEEVDLSK-----------------VVVTNFEIRALKTGE---EKASHS 152
MYK+A+ASFWTAEEVDLSK ++ F E E+ S
Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQE 60
Query: 153 RNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALR 200
P Y F+I + Y + I K IETMP VKKKADWALR
Sbjct: 61 VQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALR 120
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 121 WIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 176
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 11 TAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 70
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 71 GFQILIENVHSEMYSLLIDTYIRDPKKR 98
>gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
Length = 297
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 105/179 (58%), Gaps = 38/179 (21%)
Query: 113 MYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE-----------------------EKA 149
MYK+A+ASFWTAEEVDLSK + LK+ E E+
Sbjct: 1 MYKQAQASFWTAEEVDLSKDLP---HWNKLKSDEKYFISHILAFFAASDGIVNENLVERF 57
Query: 150 SHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADW 197
S P Y F+I + Y + I K IETMP VKKKADW
Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117
Query: 198 ALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 118 ALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 176
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 11 TAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 70
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 71 GFQILIENVHSEMYSLLIDTYIRDPKKR 98
>gi|384252466|gb|EIE25942.1| ribonucleoside-diphosphate reductase small chain C [Coccomyxa
subellipsoidea C-169]
Length = 340
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 116/204 (56%), Gaps = 43/204 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL N RFV++P++YQ +++MYKKA ASFWT EEVDLS+
Sbjct: 16 EPLLSPNGDRFVMYPVRYQGVFEMYKKAVASFWTVEEVDLSQDMRDWEKLSDDERHFITH 75
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYK--------- 172
+V+ N +R + E + +R Y F+I + Y
Sbjct: 76 ILAFFAASDGIVMENLAVRFMS--EVQIPEARA-FYGFQIAIENVHSEMYSLLLDHYIRD 132
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
V + K+ + I+T+PCV KKA+WA RWI SF ER++AFA VEGI FSGSF +IF
Sbjct: 133 VDQKDKML--RAIQTVPCVGKKAEWAQRWIGG-GESFAERLVAFACVEGIHFSGSFCAIF 189
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKR LMPGLTFSNELISRDE L
Sbjct: 190 WLKKRLLMPGLTFSNELISRDEGL 213
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 79/112 (70%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ + + +F + K+ + T E + +D+ W KL+ DE++FI+H+LAFFAASD
Sbjct: 27 VMYPVRYQGVFEMYKKAVASFWTV--EEVDLSQDMRDWEKLSDDERHFITHILAFFAASD 84
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIV ENL RF EVQI EAR FYGFQIA+ENVHSEMYSLL+D YI+D +++
Sbjct: 85 GIVMENLAVRFMSEVQIPEARAFYGFQIAIENVHSEMYSLLLDHYIRDVDQK 136
>gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis]
Length = 407
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 74/84 (88%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL HW L DE++FISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGFQI
Sbjct: 138 VDLSKDLQHWESLKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQI 197
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMEN+HSEMYSLLIDTYIK+ ER
Sbjct: 198 AMENIHSEMYSLLIDTYIKEPSER 221
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCVKKKADWAL WI ++ +S+GERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 227 AIETLPCVKKKADWALNWIGNQKASYGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 286
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 287 TFSNELISRDEGL 299
>gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
Length = 388
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 114/203 (56%), Gaps = 37/203 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EP+L RF +FP++Y ++W++YKKA+ S WTAEEVDLSK
Sbjct: 72 EYEPILASTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKTLNDNEQKFI 131
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E++ + A S NE + + I +Y
Sbjct: 132 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQSHNE--MVHGETYSKLIDKYIK 189
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC+++KA+WAL+W D++ F ER+ AFA VEGIFFSGSF +IFW
Sbjct: 190 DGAEKKQLFEAIQTVPCIERKANWALKWF-DKSRPFAERLFAFACVEGIFFSGSFCAIFW 248
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGL FSNELISRDE L
Sbjct: 249 LKKRGLMPGLCFSNELISRDEGL 271
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +D+ W L +E+ FI ++LAFFA SDGI
Sbjct: 87 FPLKYPELWELYKKAQMSNWT--AEEVDLSKDMDDWKTLNDNEQKFIKYILAFFAGSDGI 144
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 145 VFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLIDKYIKDGAEK 194
>gi|332214017|ref|XP_003256123.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
[Nomascus leucogenys]
gi|332830969|ref|XP_003311933.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Pan
troglodytes]
gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo
sapiens]
gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens]
Length = 297
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 104/176 (59%), Gaps = 32/176 (18%)
Query: 113 MYKKAEASFWTAEEVDLSK-----------------VVVTNFEIRALKTGE---EKASHS 152
MYK+A+ASFWTAEEVDLSK ++ F E E+ S
Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQE 60
Query: 153 RNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALR 200
P Y F+I + Y + I K IETMP VKKKADWALR
Sbjct: 61 VQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALR 120
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 121 WIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 176
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 11 TAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 70
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 71 GFQILIENVHSEMYSLLIDTYIRDPKKR 98
>gi|340500115|gb|EGR27014.1| ribonucleoside-diphosphate reductase small chain, putative
[Ichthyophthirius multifiliis]
Length = 366
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 112/212 (52%), Gaps = 51/212 (24%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTG 145
+ E+EP+L++NP RFV+FPI+Y IW+MYKK ASFWTA+E+DL + LK
Sbjct: 44 DFESEPILQENPNRFVMFPIKYNKIWEMYKKELASFWTADEIDL---------YQDLKDW 94
Query: 146 EEKASHSRN-EPYLFRIKLAPGGI----------CRYKVKKGGKITGG------------ 182
E R+ Y+ A GI C ++ + G
Sbjct: 95 ERLTDGERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARAFYGFQIAMENIHSETY 154
Query: 183 ------------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
K +P + KKA WAL+WI + +F R++AFA++EGIFF
Sbjct: 155 SLLIDTYIKDDNEKEFLFKACLNIPVINKKAQWALKWINNN-DNFASRLVAFAAIEGIFF 213
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSF +IFWLKKR LMPGLTFSNELISRDE L
Sbjct: 214 SGSFCAIFWLKKRSLMPGLTFSNELISRDEGL 245
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 65/80 (81%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
+DL W +LT E++FI +VLAFFAASDGIV ENL E+F EVQI EAR FYGFQIAMEN
Sbjct: 89 QDLKDWERLTDGERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARAFYGFQIAMEN 148
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSE YSLLIDTYIKD E+
Sbjct: 149 IHSETYSLLIDTYIKDDNEK 168
>gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake
phycodnavirus 1]
Length = 324
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 113/203 (55%), Gaps = 38/203 (18%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EPLL ++ RFV+FPI + IWKMYKK FW AEE+D SK
Sbjct: 6 NEPLLTEDDNRFVMFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHWNKLQPEEQYYIK 65
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKV 173
+V+ N +R + E + S +R Y F+I + I Y
Sbjct: 66 MILAFFASSDGIVLENLGLRFM--NEVQLSEAR-AFYGFQIAMENIHSETYSLLIDSYIK 122
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ K ++E PC++KK WA++WI D+ S+F R++AFA VEGIFFSG+F SI+W
Sbjct: 123 DENEKNKLFHSLEHFPCIEKKGKWAMKWINDKKSNFSTRLVAFACVEGIFFSGAFCSIYW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRG+MPGLTFSNELISRDE L
Sbjct: 183 LKKRGIMPGLTFSNELISRDEAL 205
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 70/86 (81%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL+HWNKL +E+Y+I +LAFFA+SDGIV ENL RF EVQ++EAR FYGF
Sbjct: 42 EEIDTSKDLNHWNKLQPEEQYYIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLID+YIKD+ E+
Sbjct: 102 QIAMENIHSETYSLLIDSYIKDENEK 127
>gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens]
Length = 297
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 104/176 (59%), Gaps = 32/176 (18%)
Query: 113 MYKKAEASFWTAEEVDLSK-----------------VVVTNFEIRALKTGE---EKASHS 152
MYK+A+ASFWTAEEVDLSK ++ F E E+ S
Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQE 60
Query: 153 RNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALR 200
P Y F+I + Y + I K IETMP VKKKADWALR
Sbjct: 61 VQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALR 120
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 121 WIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 176
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 11 TAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 70
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 71 GFQILIENVHSEMYSLLIDTYIRDPKKR 98
>gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 114/207 (55%), Gaps = 48/207 (23%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL ++ RF +FPI++ IW+ YKKA ASFWTAEEV LS
Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGLSADARHWDEALSPDERHFIS 74
Query: 132 -----------VVVTNFEIRAL---KTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N R + + E +A + +E Y L
Sbjct: 75 HVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQIAIENIHSEMY----SLLLETYI 130
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
R V+K + I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF
Sbjct: 131 RDHVEKDRLF---RAIDTVPAVRRKADWAMRWI-DGGERFAERIVAFACVEGIFFSGSFC 186
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 187 AIFWLKKRGLMPGLTFSNELISRDEGL 213
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW++ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 48 TAEEVGLSADARHWDEALSPDERHFISHVLAFFAASDGIVLENLASRFMTDVQVAEARAF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 108 YGFQIAIENIHSEMYSLLLETYIRDHVEK 136
>gi|260666020|ref|YP_003212974.1| hypothetical protein H665_p151 [Ostreococcus tauri virus 1]
gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
Length = 389
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 111/205 (54%), Gaps = 36/205 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EP+L RF +FP++Y +W++YKKA+ S WTAEEVDLSK
Sbjct: 72 EYEPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKTLNENEQKFI 131
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E++ + A NE + + I +Y
Sbjct: 132 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNE--MVHGETYSKLIDKYIK 189
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC++KKA WA++W ++ SF ER+ AFA VEGIFFSGSF +IFW
Sbjct: 190 DPSEKKELFEAIQTVPCIEKKAQWAMKWFDTKSRSFAERLFAFACVEGIFFSGSFCAIFW 249
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
LKKRGLMPGL FSNELISRDE L
Sbjct: 250 LKKRGLMPGLCFSNELISRDEGLHQ 274
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +DL W L +E+ FI ++LAFFA SDGI
Sbjct: 87 FPLKYPHLWELYKKAQMSNWT--AEEVDLSKDLDDWKTLNENEQKFIKYILAFFAGSDGI 144
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 145 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEK 194
>gi|227541|prf||1706181A ribonucleotide reductase
Length = 290
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 4 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 63
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 64 GFQIAMENIHSEMYSLLIDTYIKDPKER 91
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 100/170 (58%), Gaps = 34/170 (20%)
Query: 120 SFWTAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSR 153
SFWTAEEVDLSK + + N + + E + + +R
Sbjct: 1 SFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 60
Query: 154 NEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEA 206
Y F+I + Y + I K IETMPCVKKKADWALRWI D+
Sbjct: 61 C-FYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKE 119
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 120 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 169
>gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 332
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 115/209 (55%), Gaps = 36/209 (17%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 44 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFSTL 103
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKI 179
K V+ F E +E + K+ G I + K+
Sbjct: 104 TPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKL 163
Query: 180 TGG------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGS
Sbjct: 164 IETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGS 222
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 FAAIFWLKKRGLMPGLTFSNELISRDEGL 251
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 96 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 155
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 156 HSEMYSKLIETLIRDKEEQ 174
>gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 336
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 115/209 (55%), Gaps = 36/209 (17%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFSTL 75
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKI 179
K V+ F E +E + K+ G I + K+
Sbjct: 76 TPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKL 135
Query: 180 TGG------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGS
Sbjct: 136 IETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGS 194
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 195 FAAIFWLKKRGLMPGLTFSNELISRDEGL 223
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 127
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 128 HSEMYSKLIETLIRDKEEQ 146
>gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 330
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 116/209 (55%), Gaps = 36/209 (17%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+Q++VE EPLL + +R+VIFPIQY +IW++YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFSTL 75
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKI 179
K V+ F E +E + K+ G I + K+
Sbjct: 76 TPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKL 135
Query: 180 TGG------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGS
Sbjct: 136 IETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGS 194
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 195 FAAIFWLKKRGLMPGLTFSNELISRDEGL 223
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 127
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 128 HSEMYSKLIETLIRDKEEQ 146
>gi|357289644|gb|AET72957.1| ribonucleoside-diphosphate reductase small subunit [Phaeocystis
globosa virus 12T]
gi|357292439|gb|AET73775.1| ribonucleoside-diphosphate reductase small subunit [Phaeocystis
globosa virus 14T]
Length = 325
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 111/203 (54%), Gaps = 38/203 (18%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
EPLL + RFV+FPI+ +IW+MYKK + FWT+ EVDLSK
Sbjct: 6 VEPLLTPDDNRFVMFPIKDDEIWQMYKKQQDLFWTSTEVDLSKDPAHWEALTGDEKHFIS 65
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + GE + + +R Y +I + Y I
Sbjct: 66 MILAFFAASDGIVLENLGTRFM--GEVQLAEAR-AFYGLQIAMENIHSITYSTLIDTYIK 122
Query: 181 GG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
I PC+KKK+DWA++WI D+ +SF R++AFA VEGIFFSG+F SIFW
Sbjct: 123 DTVQKHKLFNAISEFPCIKKKSDWAIKWIQDKRASFATRLVAFAVVEGIFFSGAFCSIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRG++PGL FSNELISRDE L
Sbjct: 183 LKKRGILPGLCFSNELISRDEAL 205
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 63/84 (75%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +D +HW LT DEK+FIS +LAFFAASDGIV ENL RF EVQ+ EAR FYG QI
Sbjct: 44 VDLSKDPAHWEALTGDEKHFISMILAFFAASDGIVLENLGTRFMGEVQLAEARAFYGLQI 103
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMEN+HS YS LIDTYIKD ++
Sbjct: 104 AMENIHSITYSTLIDTYIKDTVQK 127
>gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 332
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 115/209 (55%), Gaps = 36/209 (17%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFSTL 75
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKI 179
K V+ F E +E + K+ G I + K+
Sbjct: 76 TPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKL 135
Query: 180 TGG------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGS
Sbjct: 136 IETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGS 194
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 195 FAAIFWLKKRGLMPGLTFSNELISRDEGL 223
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 127
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 128 HSEMYSKLIETLIRDKEEQ 146
>gi|356980108|gb|AET43587.1| ribonucleotide reductase [Micromonas pusilla virus PL1]
Length = 389
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 115/201 (57%), Gaps = 32/201 (15%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS----------------- 130
E EP+L RF +FP++Y ++W++YKKA+ S WTAEEVDLS
Sbjct: 72 EYEPILASTLDRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSSDMEDWKNLNDNEKKFI 131
Query: 131 KVVVTNF---------EIRALKTGEEKASHSRN-EPYLFRIKLAPGGICRYKVKKGGKIT 180
K ++ F I E + S +R+ Y ++ G + K K +
Sbjct: 132 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDS 191
Query: 181 GGK-----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K I+T+PC++KKA+WAL+W ++ +F ER+ AFA VEGIFFSGSF +I+WLK
Sbjct: 192 TEKKHLFEAIQTVPCIQKKANWALKWFDTKSRTFAERLFAFACVEGIFFSGSFCAIYWLK 251
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL FSNELISRDE L
Sbjct: 252 KRGLMPGLCFSNELISRDEGL 272
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + D+ W L +EK FI ++LAFFA SDGI
Sbjct: 87 FPLKYPELWELYKKAQMSNWT--AEEVDLSSDMEDWKNLNDNEKKFIKYILAFFAGSDGI 144
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 145 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDSTEK 194
>gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide, partial [Homo
sapiens]
Length = 285
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 1 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 60
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 61 QILIENVHSEMYSLLIDTYIRDPKKR 86
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGL
Sbjct: 92 AIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGL 151
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 152 TFSNELISRDEGL 164
>gi|335286238|ref|XP_003355054.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 2 [Sus scrofa]
Length = 299
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 76/87 (87%)
Query: 247 NELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +DL HWN+L DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYG
Sbjct: 14 QEEVDLSKDLPHWNRLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYG 73
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 74 FQILIENVHSEMYSLLIDTYIRDPKQR 100
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWALRWIAD ++FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 106 AIETMPYVKKKADWALRWIADRKATFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 165
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 166 TFSNELISRDEGL 178
>gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
Length = 322
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 36/205 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E +P+L RF +FP++Y +W++YKKA+ S WTAEEVDLSK
Sbjct: 5 EYDPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKTLNENEQKFI 64
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E++ + A NE + + I +Y
Sbjct: 65 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNE--MVHGETYSKLIDKYIK 122
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC++KKA WA++W ++ SF ER+ AFA VEGIFFSGSF +IFW
Sbjct: 123 DPSEKKELFEAIQTVPCIEKKAQWAMKWFDTKSRSFAERLFAFACVEGIFFSGSFCAIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
LKKRGLMPGL FSNELISRDE L
Sbjct: 183 LKKRGLMPGLCFSNELISRDEGLHQ 207
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +DL W L +E+ FI ++LAFFA SDGI
Sbjct: 20 FPLKYPHLWELYKKAQMSNWT--AEEVDLSKDLDDWKTLNENEQKFIKYILAFFAGSDGI 77
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 78 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEK 127
>gi|426360445|ref|XP_004047453.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
[Gorilla gorilla gorilla]
Length = 382
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/47 (89%), Positives = 46/47 (97%)
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 215 GERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 261
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSK 73
>gi|345779193|ref|XP_003431837.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Canis
lupus familiaris]
Length = 299
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 75/84 (89%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI
Sbjct: 17 VDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQI 76
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+ENVHSEMYSLLIDTYI+D ++R
Sbjct: 77 LIENVHSEMYSLLIDTYIRDPKKR 100
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 67/73 (91%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWALRWI D S+FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 106 AIETMPYVKKKADWALRWIEDRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 165
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 166 TFSNELISRDEGL 178
>gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 251
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 115/209 (55%), Gaps = 36/209 (17%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFSTL 75
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKI 179
K V+ F E +E + K+ G I + K+
Sbjct: 76 TPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKL 135
Query: 180 TGG------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGS
Sbjct: 136 IETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGS 194
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 195 FAAIFWLKKRGLMPGLTFSNELISRDEGL 223
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 127
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 128 HSEMYSKLIETLIRDKEEQ 146
>gi|402878879|ref|XP_003903091.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 3 [Papio anubis]
Length = 299
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 75/84 (89%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI
Sbjct: 17 VDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQI 76
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+ENVHSEMYSLLIDTYI+D ++R
Sbjct: 77 LIENVHSEMYSLLIDTYIRDPKKR 100
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 106 AIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 165
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 166 TFSNELISRDEGL 178
>gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo
sapiens]
gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 3 [Pan troglodytes]
gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form
[Homo sapiens]
gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo
sapiens]
Length = 299
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 75/84 (89%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI
Sbjct: 17 VDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQI 76
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+ENVHSEMYSLLIDTYI+D ++R
Sbjct: 77 LIENVHSEMYSLLIDTYIRDPKKR 100
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGL
Sbjct: 106 AIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGL 165
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 166 TFSNELISRDEGL 178
>gi|403299936|ref|XP_003940727.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 2 [Saimiri boliviensis boliviensis]
Length = 299
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 75/84 (89%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI
Sbjct: 17 VDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQI 76
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+ENVHSEMYSLLIDTYI+D ++R
Sbjct: 77 LIENVHSEMYSLLIDTYIRDPKKR 100
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGLMPGL
Sbjct: 106 AIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGL 165
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 166 TFSNELISRDEGL 178
>gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi]
gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 111/197 (56%), Gaps = 41/197 (20%)
Query: 96 NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK------- 148
NP RFV+FP+ Y +W+MYKK ASFWT EEVDL + E L + E+
Sbjct: 25 NPHRFVLFPLHYPKMWEMYKKTMASFWTVEEVDLHTDIT---EWEKLNSNEQHFIKTVLA 81
Query: 149 --------ASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK----------------- 183
+ + + ++ ++++ P C Y + + +
Sbjct: 82 FFAASDGIVNENLCQQFMAQVQV-PEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERN 140
Query: 184 ----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGL 239
I+T+P V+KKA+WAL+WI E + F ER++AFA VEGIFFSGSF SIFWLKKRGL
Sbjct: 141 RLFHAIDTVPSVQKKANWALKWINSE-NLFAERLLAFACVEGIFFSGSFCSIFWLKKRGL 199
Query: 240 MPGLTFSNELISRDEDL 256
MPGL+FSNELISRDE L
Sbjct: 200 MPGLSFSNELISRDEGL 216
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D++ W KL +E++FI VLAFFAASDGIVNENL ++F +VQ+ EARCFYGF
Sbjct: 54 EEVDLHTDITEWEKLNSNEQHFIKTVLAFFAASDGIVNENLCQQFMAQVQVPEARCFYGF 113
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+H+EMYS LI+T IKDQ ER
Sbjct: 114 QIAIENIHAEMYSTLIETLIKDQRER 139
>gi|444322760|ref|XP_004182021.1| hypothetical protein TBLA_0H02160 [Tetrapisispora blattae CBS 6284]
gi|387515067|emb|CCH62502.1| hypothetical protein TBLA_0H02160 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 118/209 (56%), Gaps = 47/209 (22%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD------------------- 128
+ E LL + +R +I+PI Y DI++ YK+AEASFWTAEE+D
Sbjct: 77 KNEVLLNKDKKRKIIYPILYPDIYEAYKRAEASFWTAEEIDLSKDLHDWNNRMTPNERFF 136
Query: 129 LSKVV--------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+S+V+ V NF + ++ E K Y F+I + Y +
Sbjct: 137 ISRVLAFFAASDGIVNENLVENFSVE-VQVPEAKMF------YGFQIMIENIHSETYSLL 189
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I + IET+P +K+KA WALRWI E ++F ER++AFAS+EGIFFSGS
Sbjct: 190 IDTYIKDPRESTFLFNAIETIPQIKEKAIWALRWINAEDATFAERLVAFASIEGIFFSGS 249
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA+IFWLKK+GLMPGLTFSNELI RDE L
Sbjct: 250 FAAIFWLKKKGLMPGLTFSNELICRDEGL 278
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN ++T +E++FIS VLAFFAASDGIVNENLVE F+ EVQ+ EA+ FYG
Sbjct: 114 EEIDLSKDLHDWNNRMTPNERFFISRVLAFFAASDGIVNENLVENFSVEVQVPEAKMFYG 173
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD E
Sbjct: 174 FQIMIENIHSETYSLLIDTYIKDPRE 199
>gi|405119255|gb|AFR94028.1| ribonucleotide reductase small subunit [Cryptococcus neoformans
var. grubii H99]
Length = 430
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 113/205 (55%), Gaps = 48/205 (23%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD----------------------- 128
+LR++ RFV+FPI+Y +IW+ YK A+ASFWTAEE+D
Sbjct: 102 ILRESDSRFVLFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWHDRMTEQERFFILRI 161
Query: 129 ----------LSKVVVTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ + +V+ F E RA + + +E Y I+ Y
Sbjct: 162 LAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQSMIEQVHSETYSLLIET-------Y 214
Query: 172 KVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
K + + +PC+K+KADWAL++I DE F R++AFA VEGIFFSGSFA+I
Sbjct: 215 VRDAQEKDFLFRGMANIPCIKQKADWALKYITDELP-FRTRLVAFACVEGIFFSGSFAAI 273
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE +
Sbjct: 274 FWLKKRGLMPGLTFSNELISRDEGM 298
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
DL W +++T E++FI +LAFFAASDGIV EN+V +F+ EVQI EAR FY FQ +E
Sbjct: 141 HDLIDWHDRMTEQERFFILRILAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQSMIE 200
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
VHSE YSLLI+TY++D +E+
Sbjct: 201 QVHSETYSLLIETYVRDAQEK 221
>gi|399218011|emb|CCF74898.1| unnamed protein product [Babesia microti strain RI]
Length = 332
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 117/202 (57%), Gaps = 33/202 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS---------------- 130
+E + + + P R ++P+Q DIW YKKA+ASFWT EEVDL
Sbjct: 11 LEADEYILNPPDRASLYPLQRVDIWNFYKKAQASFWTVEEVDLGTDSRDWLGLTDGERHF 70
Query: 131 -KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRI-------KLAPGGICRYKVK 174
K V+ F E A+ N+ Y+F+I ++ I +Y +
Sbjct: 71 IKHVLAFFAASDGIVLENLAAKFLNDVKLLEAQFFYVFQITVENIHSEMYSLLIDKYIQE 130
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K+ + +ET+P ++KKA+WA RWI +E +SF ER++A+ +VEGI FSGSF +IFWL
Sbjct: 131 ESEKMHLFRAVETIPAIRKKAEWAARWINNE-NSFAERLVAYTAVEGILFSGSFCAIFWL 189
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELISRDE L
Sbjct: 190 KKRGLMPGLTFSNELISRDEGL 211
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 60/79 (75%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D W LT E++FI HVLAFFAASDGIV ENL +F +V++ EA+ FY FQI +EN+
Sbjct: 56 DSRDWLGLTDGERHFIKHVLAFFAASDGIVLENLAAKFLNDVKLLEAQFFYVFQITVENI 115
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLLID YI+++ E+
Sbjct: 116 HSEMYSLLIDKYIQEESEK 134
>gi|355717371|gb|AES05911.1| ribonucleotide reductase M2 B [Mustela putorius furo]
Length = 150
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 94/130 (72%), Gaps = 2/130 (1%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
+E S E ++ +S + F + I+ + K+ ++ E + +DL HWNKL
Sbjct: 3 NEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQA--QASFWTAEEVDLSKDLPHWNKLK 60
Query: 264 RDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLI 323
+EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGFQI +ENVHSEMYSLLI
Sbjct: 61 SEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 120
Query: 324 DTYIKDQEER 333
DTYI+D ++R
Sbjct: 121 DTYIRDPKKR 130
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 71/146 (48%), Gaps = 38/146 (26%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE- 146
+ EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK + LK+ E
Sbjct: 8 DEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP---HWNKLKSEEK 64
Query: 147 ----------------------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKI 179
E+ S P Y F+I + Y + I
Sbjct: 65 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI 124
Query: 180 TGGK-------TIETMPCVKKKADWA 198
K IETMP VKKKADWA
Sbjct: 125 RDPKKREFLFNAIETMPYVKKKADWA 150
>gi|403270691|ref|XP_003927300.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Saimiri
boliviensis boliviensis]
Length = 344
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 74/85 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L +E+YF+SHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 105 EEVDLSKDIRHWESLKPEERYFVSHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 164
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEE 332
QIAMEN+HSEMYSLLIDTYIKD E
Sbjct: 165 QIAMENIHSEMYSLLIDTYIKDPNE 189
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
PLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 71 PLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSK 111
>gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host
origin [Ostreococcus tauri virus 2]
gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host
origin [Ostreococcus tauri virus 2]
Length = 408
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 36/205 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EP+L RF +FP++Y +W++YKKA+ S WTAEEVDLSK
Sbjct: 91 EYEPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKTLNENEKKFI 150
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E++ + A NE + + I +Y
Sbjct: 151 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNE--MVHGETYSKLIDKYIK 208
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC++KKA WA++W ++ SF ER+ AFA VEGIFFSGSF +I+W
Sbjct: 209 DGSEKKQLFEAIQTVPCIEKKAKWAMKWFDTKSRSFAERLFAFACVEGIFFSGSFCAIYW 268
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
LKKRGLMPGL FSNELISRDE L
Sbjct: 269 LKKRGLMPGLCFSNELISRDEGLHQ 293
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +DL W L +EK FI ++LAFFA SDGI
Sbjct: 106 FPLKYPQLWELYKKAQMSNWT--AEEVDLSKDLDDWKTLNENEKKFIKYILAFFAGSDGI 163
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 164 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDGSEK 213
>gi|388548650|gb|AFK65852.1| ribonucleotide reductase R2 [Ostreococcus lucimarinus virus OlV6]
Length = 389
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 36/205 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EP+L RF +FP++Y +W++YKKA+ S WTAEEVDLSK
Sbjct: 72 EYEPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKTLNENEKKFI 131
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E++ + A NE + + I +Y
Sbjct: 132 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNE--MVHGETYSKLIDKYIK 189
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC++KKA WA++W ++ SF ER+ AFA VEGIFFSGSF +I+W
Sbjct: 190 DGSEKKQLFEAIQTVPCIEKKAKWAMKWFDTKSRSFAERLFAFACVEGIFFSGSFCAIYW 249
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
LKKRGLMPGL FSNELISRDE L
Sbjct: 250 LKKRGLMPGLCFSNELISRDEGLHQ 274
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +DL W L +EK FI ++LAFFA SDGI
Sbjct: 87 FPLKYPQLWELYKKAQMSNWT--AEEVDLSKDLDDWKTLNENEKKFIKYILAFFAGSDGI 144
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 145 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDGSEK 194
>gi|388548908|gb|AFK66109.1| ribonucleotide reductase R2 [Ostreococcus lucimarinus virus OlV3]
Length = 358
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 36/205 (17%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E EP+L RF +FP++Y +W++YKKA+ S WTAEEVDLSK
Sbjct: 41 EYEPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKTLNENEKKFI 100
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N E++ + A NE + + I +Y
Sbjct: 101 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNE--MVHGETYSKLIDKYIK 158
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC++KKA WA++W ++ SF ER+ AFA VEGIFFSGSF +I+W
Sbjct: 159 DGSEKKQLFEAIQTVPCIEKKAKWAMKWFDTKSRSFAERLFAFACVEGIFFSGSFCAIYW 218
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
LKKRGLMPGL FSNELISRDE L
Sbjct: 219 LKKRGLMPGLCFSNELISRDEGLHQ 243
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +DL W L +EK FI ++LAFFA SDGI
Sbjct: 56 FPLKYPQLWELYKKAQMSNWT--AEEVDLSKDLDDWKTLNENEKKFIKYILAFFAGSDGI 113
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 114 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDGSEK 163
>gi|388522397|gb|AFK49260.1| unknown [Lotus japonicus]
Length = 218
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 39/215 (18%)
Query: 65 LSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
L + P + ++ + V A + E EP+L + +RF +FPI+Y+ +W+MYKKA ASFWTA
Sbjct: 4 LENGPARKETKQQLVPAQTEHEHEQEPILMEQTQRFCMFPIRYKQVWEMYKKAPASFWTA 63
Query: 125 EEVDLS----------------------------KVVVTNFEIRALKTGEEKASHSRNEP 156
EEVDL+ +V+ N R L + + +
Sbjct: 64 EEVDLTYDVQHWATLSNSEKHFITHVLAFFAASDGIVLENLAARFLNDVQIPEARAF--- 120
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I + IE +PCV +KA+WAL WI + ++SF
Sbjct: 121 YGFQIAMENIHSEMYSLLLETLIKDSREKHRLFNAIENLPCVARKAEWALNWI-NSSTSF 179
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
ER++AFA +EGIFFSGSF SIFWLKKRGLMPGLT
Sbjct: 180 AERLVAFACIEGIFFSGSFCSIFWLKKRGLMPGLT 214
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 69/93 (74%)
Query: 241 PGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITE 300
P ++ E + D+ HW L+ EK+FI+HVLAFFAASDGIV ENL RF +VQI E
Sbjct: 57 PASFWTAEEVDLTYDVQHWATLSNSEKHFITHVLAFFAASDGIVLENLAARFLNDVQIPE 116
Query: 301 ARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
AR FYGFQIAMEN+HSEMYSLL++T IKD E+
Sbjct: 117 ARAFYGFQIAMENIHSEMYSLLLETLIKDSREK 149
>gi|348588881|ref|XP_003480193.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Cavia porcellus]
Length = 351
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL HWNKL +EKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFY
Sbjct: 65 TAEEVDLSKDLPHWNKLKPEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 124
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQI +ENVHSEMYSLLIDTYI++ E+R
Sbjct: 125 GFQILIENVHSEMYSLLIDTYIREPEQR 152
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKRGL+PGL
Sbjct: 158 AIETMPFVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLLPGL 217
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 218 TFSNELISRDEGL 230
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSK 73
>gi|443893923|dbj|GAC71111.1| ribonucleotide reductase, beta subunit [Pseudozyma antarctica T-34]
Length = 280
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 106/178 (59%), Gaps = 35/178 (19%)
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------VTNFEIRALKTG 145
MYKKAEASFWTAEE+DLSK + + N + +
Sbjct: 1 MYKKAEASFWTAEEIDLSKDLHDWDNKLNDNERHFISHVLAFFAASDGIVNENLVERFSS 60
Query: 146 EEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWA 198
E +A+ +R Y F+I + Y + I + +ET+P VKKKADWA
Sbjct: 61 EVQAAEARC-FYGFQIMMENIHSETYSLLIDTYIREPEQRELLFDAVETIPVVKKKADWA 119
Query: 199 LRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
LRWI+D ++F ER++AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 120 LRWISDRRATFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 177
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYG
Sbjct: 13 EEIDLSKDLHDWDNKLNDNERHFISHVLAFFAASDGIVNENLVERFSSEVQAAEARCFYG 72
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYI++ E+R
Sbjct: 73 FQIMMENIHSETYSLLIDTYIREPEQR 99
>gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
Length = 387
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 113/203 (55%), Gaps = 37/203 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
E+EP+L RF +FPI+++++W +YKKA+ S WTAEE+D SK
Sbjct: 71 ESEPMLLPTLSRFTVFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDWNELSDNEKHFI 130
Query: 132 ------------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
+V N EI+ + A S NE + + I +Y
Sbjct: 131 KYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQSHNE--MVHGETYSKLIDKYIK 188
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K + I+T+PC+++KA WA++W D+ F ER++AFA VEGIFFSGSF +IFW
Sbjct: 189 NSSEKKQLFEAIQTIPCIERKAKWAMKWF-DKKRPFAERLLAFACVEGIFFSGSFCAIFW 247
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGL+PGL FSNELISRDE +
Sbjct: 248 LKKRGLLPGLCFSNELISRDEGM 270
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 234 LKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFT 293
L K+ M T E I +D+ WN+L+ +EK+FI ++LAFFA SDGIV EN+ F
Sbjct: 96 LYKKAQMSNWT--AEEIDFSKDMDDWNELSDNEKHFIKYILAFFAGSDGIVFENINNNFA 153
Query: 294 QEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
E+Q+TEAR FY +Q E VH E YS LID YIK+ E+
Sbjct: 154 DEIQLTEARSFYAYQSHNEMVHGETYSKLIDKYIKNSSEK 193
>gi|357111351|ref|XP_003557477.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
isoform 1 [Brachypodium distachyon]
gi|357111353|ref|XP_003557478.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
isoform 2 [Brachypodium distachyon]
Length = 336
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 118/217 (54%), Gaps = 49/217 (22%)
Query: 80 SAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------- 131
+AP + E EPLL ++ RF +FPI+Y IW+ YKKA ASFWTAEEVDLS
Sbjct: 3 AAPNLVDAE-EPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSSDARHWDET 61
Query: 132 ---------------------VVVTNFEIRAL---KTGEEKASHS--------RNEPYLF 159
+V+ N R + + E +A + +E Y
Sbjct: 62 LSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSL 121
Query: 160 RIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASV 219
++ Y K + ++T+P V++KA W++RWI + F ER++AFA V
Sbjct: 122 LLE-------TYIRDAAEKDRLFRAVDTVPAVRRKAVWSMRWI-EGGERFAERLVAFACV 173
Query: 220 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
EGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 174 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 210
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW++ L+ DE++FISHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 45 TAEEVDLSSDARHWDETLSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 104
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 105 YGFQIAIENIHSEMYSLLLETYIRDAAEK 133
>gi|255530602|ref|YP_003090974.1| ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
2366]
gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
2366]
Length = 324
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 112/206 (54%), Gaps = 48/206 (23%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS--------------------------- 120
E E LL++N RFV+ PI+Y +IW+MYKK+EAS
Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHWDNLNDGERHFI 62
Query: 121 -----FWTAEEVDLSKVVVTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGI 168
F++A + +++ + NF E R + + +E Y I
Sbjct: 63 SHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID------ 116
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
Y K IET+PCVKKKA+WALRWI + SF ER++AFA+VEGIFFSGSF
Sbjct: 117 -TYIKDPDEKDRLFHAIETVPCVKKKAEWALRWI--DNGSFAERLVAFAAVEGIFFSGSF 173
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDE 254
SIFWLKKRGLMPGLTFSNELISRDE
Sbjct: 174 CSIFWLKKRGLMPGLTFSNELISRDE 199
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D HW+ L E++FISH+LAFF+ASDGIVNENL F EVQ+ EARCFYGF
Sbjct: 40 EEIDLSDDQKHWDNLNDGERHFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGF 99
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE Y+LLIDTYIKD +E+
Sbjct: 100 QIMMENIHSETYALLIDTYIKDPDEK 125
>gi|378706263|gb|AFC35064.1| hypothetical protein OtV6_156c [Ostreococcus tauri virus RT-2011]
Length = 388
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 117/201 (58%), Gaps = 33/201 (16%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFEIRAL 142
E EP+L RF +FP++Y ++W++YKKA+ S WTAEEVDLSK + + + E + +
Sbjct: 72 EYEPILAPTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKTLNDNEQKFI 131
Query: 143 K---------------------TGEEKASHSRN-EPYLFRIKLAPGGICRYKVKKGGKIT 180
K E + S +R+ Y ++ G + K K +
Sbjct: 132 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDS 191
Query: 181 GGK-----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K I+T+PC++KKA WA++W D++ F ER+ AFA VEGIFFSGSF +I+WLK
Sbjct: 192 TEKKQLFEAIQTVPCIEKKAQWAMKWF-DKSRPFAERLFAFACVEGIFFSGSFCAIYWLK 250
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL FSNELISRDE L
Sbjct: 251 KRGLMPGLCFSNELISRDEGL 271
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + +D+ W L +E+ FI ++LAFFA SDGI
Sbjct: 87 FPLKYPELWELYKKAQMSNWT--AEEVDLSKDMDDWKTLNDNEQKFIKYILAFFAGSDGI 144
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 145 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDSTEK 194
>gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces
cerevisiae]
Length = 399
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 132/247 (53%), Gaps = 56/247 (22%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFW---TAEEVDLSKVV---------------------------------VTN 136
Y EASFW TAEE+DLSK + V N
Sbjct: 99 AY---EASFWTAETAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVEN 155
Query: 137 FEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMP 189
F ++ E K+ Y F+I + Y + I K E T+P
Sbjct: 156 FSTE-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIP 208
Query: 190 CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 249
+ +KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNEL
Sbjct: 209 EIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNEL 268
Query: 250 ISRDEDL 256
I RDE L
Sbjct: 269 ICRDEGL 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>gi|392969753|ref|ZP_10335168.1| Ribonucleoside-diphosphate reductase [Fibrisoma limi BUZ 3]
gi|387841947|emb|CCH57226.1| Ribonucleoside-diphosphate reductase [Fibrisoma limi BUZ 3]
Length = 330
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 120/214 (56%), Gaps = 51/214 (23%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS---------------------- 120
+Q +V EP+L ++ RFV+FPI++ DIW+MYKK EAS
Sbjct: 2 LQHDV-IEPILEEDKGRFVLFPIKHNDIWQMYKKHEASFWTAEEIDLSQDLKDWDNLNDG 60
Query: 121 ----------FWTAEEVDLSKVVVTNFEIRALKTGEEKASHS--------RNEPYLFRIK 162
F+ A + +++ + NF + ++ E K + +E Y
Sbjct: 61 ERHFISHVLAFFAASDGIVNENLAVNF-LSEVQYAEAKCFYGFQVMMENIHSETY----S 115
Query: 163 LAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
L + V+K + I+T+PCV+KKA+WALRWI E SF ER+IAFA+VEGI
Sbjct: 116 LLIDTYIKDPVEKDRMLNA---IDTIPCVQKKAEWALRWI--ENGSFAERLIAFAAVEGI 170
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSF SIFWLKKRGLMPGL+FSNELISRDE L
Sbjct: 171 FFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGL 204
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W+ L E++FISHVLAFFAASDGIVNENL F EVQ EA+CFYGF
Sbjct: 43 EEIDLSQDLKDWDNLNDGERHFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YSLLIDTYIKD E+
Sbjct: 103 QVMMENIHSETYSLLIDTYIKDPVEK 128
>gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 322
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 113/200 (56%), Gaps = 39/200 (19%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------------- 131
+L+DN RF +FP+++ ++WKMYK+A ASFW AEE+DLS
Sbjct: 1 MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDWGNLTESEQHFISHVL 60
Query: 132 --------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKL------APGGICRYKVKKG- 176
+V+ N +R LK + + + Y F++ + G + +K
Sbjct: 61 AFFAASDGIVLENLGLRFLKDVQMPEARAF---YGFQLAMENIHSETYGLLLETYIKDSV 117
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
+ + I T+P V +KA WALRWI + F ER+IAFA VEGIFFSGSF +IFWLKK
Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWI-QSSECFAERLIAFACVEGIFFSGSFCAIFWLKK 176
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLM GLTFSNELISRDE L
Sbjct: 177 RGLMRGLTFSNELISRDEGL 196
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL W LT E++FISHVLAFFAASDGIV ENL RF ++VQ+ EAR FYGF
Sbjct: 34 EEIDLSTDLRDWGNLTESEQHFISHVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGF 93
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+AMEN+HSE Y LL++TYIKD +R
Sbjct: 94 QLAMENIHSETYGLLLETYIKDSVQR 119
>gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299]
gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299]
Length = 324
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 112/200 (56%), Gaps = 39/200 (19%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------------- 131
+L+DN RF +FPI+ +WKMYK+AEASFW+AEE+DLS
Sbjct: 1 MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVTLNDNEQHFISHVL 60
Query: 132 --------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKL------APGGICRYKVKKGG 177
+V+ N +R +K + + + Y F++ + G + VK
Sbjct: 61 AFFAASDGIVLENLGLRFMKDVQLPEARAF---YAFQLAIENIHSETYGLLIDTYVKDSV 117
Query: 178 KITG-GKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + I +P V +KA WAL+WI + F ER++AFA VEGIFFSGSF +IFWLKK
Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWI-QSSECFAERLVAFACVEGIFFSGSFCAIFWLKK 176
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLM GLTFSNELISRDE L
Sbjct: 177 RGLMRGLTFSNELISRDEGL 196
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 62/84 (73%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
S E I D W L +E++FISHVLAFFAASDGIV ENL RF ++VQ+ EAR FY
Sbjct: 32 SAEEIDLSMDYKDWVTLNDNEQHFISHVLAFFAASDGIVLENLGLRFMKDVQLPEARAFY 91
Query: 306 GFQIAMENVHSEMYSLLIDTYIKD 329
FQ+A+EN+HSE Y LLIDTY+KD
Sbjct: 92 AFQLAIENIHSETYGLLIDTYVKD 115
>gi|357542115|gb|AET84875.1| ribonucleotide reductase [Micromonas pusilla virus SP1]
Length = 389
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 116/201 (57%), Gaps = 32/201 (15%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------KVVVTNFE--- 138
E EP+L RF +FP++Y +W++YKKA+ S WTAEEVDLS K + N +
Sbjct: 72 EYEPILSPTLNRFTVFPLKYPGLWELYKKAQMSNWTAEEVDLSTDLSDWKTLNDNEQKFI 131
Query: 139 --IRALKTG---------------EEKASHSRN-EPYLFRIKLAPGGICRYKVKKGGKIT 180
I A G E + S +R+ Y ++ G + K K +
Sbjct: 132 KYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDS 191
Query: 181 GGK-----TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K I+T+PC+++KA+WAL+W ++ +F ER+ AFA VEGIFFSGSF +I+WLK
Sbjct: 192 TEKKHLFEAIQTVPCIERKANWALKWFDTKSRTFSERLFAFACVEGIFFSGSFCAIYWLK 251
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLMPGL FSNELISRDE L
Sbjct: 252 KRGLMPGLCFSNELISRDEGL 272
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
F + ++ L K+ M T E + DLS W L +E+ FI ++LAFFA SDGI
Sbjct: 87 FPLKYPGLWELYKKAQMSNWT--AEEVDLSTDLSDWKTLNDNEQKFIKYILAFFAGSDGI 144
Query: 284 VNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
V EN+ F EVQI+EAR FY +Q E VH E YS LID YIKD E+
Sbjct: 145 VFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDSTEK 194
>gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus
siliculosus]
Length = 504
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW-----------------TAEEVDLSKV 132
EP+ R +P RFV+FPI++ ++W MYKKA+ASFW T E +
Sbjct: 181 EPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWEALTGNEQHFISM 240
Query: 133 VVTNFEIR---ALKTGEEKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGKT 184
V+ F ++ E+ S P Y F+I + Y + I +
Sbjct: 241 VLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKQE 300
Query: 185 IETM-------PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
+ + PCVK+KADWA+RWI +A+ F ER++AFA+VEG+FFSGSF +IFWLKKR
Sbjct: 301 RDNLFNAYNDIPCVKQKADWAMRWIGSDAT-FAERLVAFAAVEGVFFSGSFCAIFWLKKR 359
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNE+ISRDE L
Sbjct: 360 GLMPGLTFSNEMISRDEGL 378
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D W LT +E++FIS VLAFFAASDGIV ENLVERF+QEVQ+ EARCFYGF
Sbjct: 216 EEVDLSQDSRDWEALTGNEQHFISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGF 275
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAME++H EMY+LL+DTYIKD++ER
Sbjct: 276 QIAMESIHQEMYALLLDTYIKDKQER 301
>gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes
scapularis]
gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes
scapularis]
Length = 376
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 103/159 (64%), Gaps = 3/159 (1%)
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K +I GKT+E +K + A + + E E ++ + F + I+ +
Sbjct: 22 KENQIPEGKTVECKDSLKTEKRLAKKTVV-ELEKQDEPLLRENPRRFVMFPIVYEDIWRM 80
Query: 235 KKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQ 294
K+ T E + +DL HW+ L +E++FISH+LAFFAASDGIVNENLVERF+Q
Sbjct: 81 YKKAEASFWTV--EEVDLGKDLPHWDGLKPEERHFISHILAFFAASDGIVNENLVERFSQ 138
Query: 295 EVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
EVQ+TEARCFYGFQ+A+ENVHSEMYSLLIDTYIKD ER
Sbjct: 139 EVQVTEARCFYGFQMAIENVHSEMYSLLIDTYIKDPSER 177
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 69/73 (94%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ETMPC+K+KADWAL WI++ +++FGER++AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 183 AVETMPCIKRKADWALNWISNRSATFGERIVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 242
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 243 TFSNELISRDEGL 255
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query: 48 LPQNTLKDLTNNLQQSK---LSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFP 104
L TL D N + + K DS +K K+ +++ + EPLLR+NPRRFV+FP
Sbjct: 14 LKNTTLGDKENQIPEGKTVECKDSLKTEKRLAKKTVVELEK--QDEPLLRENPRRFVMFP 71
Query: 105 IQYQDIWKMYKKAEASFWTAEEVDLSK 131
I Y+DIW+MYKKAEASFWT EEVDL K
Sbjct: 72 IVYEDIWRMYKKAEASFWTVEEVDLGK 98
>gi|431901752|gb|ELK08629.1| Ribonucleoside-diphosphate reductase subunit M2 B [Pteropus alecto]
Length = 318
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 62 EEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 121
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLI TYI+D ++R
Sbjct: 122 QILIENVHSEMYSLLIHTYIRDPKKR 147
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 104/215 (48%), Gaps = 68/215 (31%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTN 136
+++S+ EN EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK +
Sbjct: 16 ERLSSDTNEN--EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP-- 71
Query: 137 FEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAPGGI 168
LK+ E E+ S P Y F+I +
Sbjct: 72 -HWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHS 130
Query: 169 CRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEG 221
Y + I K IETMP VKKKADWALRWIAD S+F
Sbjct: 131 EMYSLLIHTYIRDPKKRDFLFNAIETMPYVKKKADWALRWIADRKSTF------------ 178
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 179 ----------------GLMPGLTFSNELISRDEGL 197
>gi|403221091|dbj|BAM39224.1| ribonucleotide reductase R2 subunit/ribonucleoside-diphosphate
reductase small chain [Theileria orientalis strain
Shintoku]
Length = 352
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 112/202 (55%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
E LL NP R +FPI Y D W+ YKKA+ASFWTAEE+D S
Sbjct: 15 EFLLNHNPNRTTLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDMVHWNKLTKDEHHFISN 74
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVK 174
+V+ N ++ L+ + + S Y F+I + I Y
Sbjct: 75 VLAFFAASDGIVLENLALKFLRDVKLPEAQSF---YSFQIAVENIHSETYSLLIENYIKD 131
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K IET+ VK KA+WA +WI D+ +SF ER++A+A+VEGI FSGSF ++FWL
Sbjct: 132 EAEKNRLFMAIETIDAVKDKANWAKKWITDD-NSFAERIVAYAAVEGILFSGSFCALFWL 190
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELI+RDE L
Sbjct: 191 KKRGLMPGLTFSNELIARDEGL 212
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ HWNKLT+DE +FIS+VLAFFAASDGIV ENL +F ++V++ EA+ FY F
Sbjct: 50 EEIDFSMDMVHWNKLTKDEHHFISNVLAFFAASDGIVLENLALKFLRDVKLPEAQSFYSF 109
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLI+ YIKD+ E+
Sbjct: 110 QIAVENIHSETYSLLIENYIKDEAEK 135
>gi|409049898|gb|EKM59375.1| hypothetical protein PHACADRAFT_249825 [Phanerochaete carnosa
HHB-10118-sp]
Length = 221
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 106/178 (59%), Gaps = 35/178 (19%)
Query: 113 MYKKAEASFWTAEEVDLSKVVV---------------------------TNFEIRALKTG 145
MYKKAEASFWTAEE+DL +V N + +
Sbjct: 1 MYKKAEASFWTAEELDLGHDLVDWNDKLNPDERRFISHVLAFFAASDGIVNENLVERFSN 60
Query: 146 EEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWA 198
E +A+ +R Y F++ + Y + I + I+T+PC+KKKADWA
Sbjct: 61 EVQAAEARC-FYGFQVMIENIHSETYSLLIDTYIKDPQERDFLFDAIDTIPCIKKKADWA 119
Query: 199 LRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
LRWI+++ SSFGER+IAFA+VEGIFFSG FASIFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 120 LRWISNKQSSFGERLIAFATVEGIFFSGCFASIFWLKKRGLMPGLTFSNELISRDEGM 177
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%), Gaps = 1/80 (1%)
Query: 255 DLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL WN KL DE+ FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQ+ +EN
Sbjct: 20 DLVDWNDKLNPDERRFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQVMIEN 79
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSE YSLLIDTYIKD +ER
Sbjct: 80 IHSETYSLLIDTYIKDPQER 99
>gi|442754007|gb|JAA69163.1| Putative ribonucleotide reductase beta subunit [Ixodes ricinus]
Length = 376
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
K +I GKT+++ +K + A + A E E ++ + F + I+ +
Sbjct: 22 KENQIPEGKTVDSKDSLKTEKRLAKK-TAVELEKQDEPLLRENPRRFVMFPIVYEDIWRM 80
Query: 235 KKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQ 294
K+ T E + +DL HW+ L +E++FISH+LAFFAASDGIVNENLVERF+Q
Sbjct: 81 YKKAEASFWTV--EEVDLGKDLPHWDGLKPEERHFISHILAFFAASDGIVNENLVERFSQ 138
Query: 295 EVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
EVQ+TEARCFYGFQ+A+ENVHSEMYSLLIDTYIKD ER
Sbjct: 139 EVQVTEARCFYGFQMAIENVHSEMYSLLIDTYIKDPSER 177
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ETMPC+K+KADWAL WI + +++FGER++AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 183 AVETMPCIKRKADWALNWIGNRSATFGERIVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 242
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 243 TFSNELISRDEGL 255
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 60/86 (69%), Gaps = 3/86 (3%)
Query: 48 LPQNTLKDLTNNLQQSKLSDS--PIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPI 105
L TL+D N + + K DS +K + L + +A V+ + EPLLR+NPRRFV+FPI
Sbjct: 14 LKNTTLEDKENQIPEGKTVDSKDSLKTEKRLAKKTA-VELEKQDEPLLRENPRRFVMFPI 72
Query: 106 QYQDIWKMYKKAEASFWTAEEVDLSK 131
Y+DIW+MYKKAEASFWT EEVDL K
Sbjct: 73 VYEDIWRMYKKAEASFWTVEEVDLGK 98
>gi|440491857|gb|ELQ74463.1| Ribonucleotide reductase, beta subunit [Trachipleistophora hominis]
Length = 325
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 115/213 (53%), Gaps = 39/213 (18%)
Query: 79 VSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----- 133
+S P +E + TEP ++ +FP+ QD+W+MYK+A +SFWT EEVDLSK +
Sbjct: 1 MSHPPEEALLTEP-----TNKYTLFPLTNQDVWQMYKQALSSFWTVEEVDLSKDIDDWNR 55
Query: 134 ---------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYK 172
+ N + + E + +R Y F+I + Y
Sbjct: 56 LNCDERHFISYVLAFFAASDGIVNENLLENFSREVQLKEARC-FYGFQIMIENVHSEMYS 114
Query: 173 VKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
+ I + I + VK+KA+W +WI D+ S F RVIAFA VEG+FFS
Sbjct: 115 LLIDTYIKDQEEKDFLFNAIANINTVKRKAEWCFKWINDKDSDFATRVIAFACVEGLFFS 174
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDLSH 258
GSFASIFWLKKRGLMPGLTFSNELISRDE L +
Sbjct: 175 GSFASIFWLKKRGLMPGLTFSNELISRDEGLHY 207
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN+L DE++FIS+VLAFFAASDGIVNENL+E F++EVQ+ EARCFYGF
Sbjct: 42 EEVDLSKDIDDWNRLNCDERHFISYVLAFFAASDGIVNENLLENFSREVQLKEARCFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYIKDQEE+
Sbjct: 102 QIMIENVHSEMYSLLIDTYIKDQEEK 127
>gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis]
Length = 197
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 107/195 (54%), Gaps = 39/195 (20%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
V V EPLL NP RF +FPI+Y +IW+MYKKAEASFWTAEEVDLS+
Sbjct: 4 VPSAVAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWEALTAD 63
Query: 132 -----------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R +K E + + +R Y F+I + Y +
Sbjct: 64 ERHFITHVLAFFAASDGIVLENLAGRFMK--EVQVAEARAF-YGFQIAIENIHSEMYSLL 120
Query: 175 KGGKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I IET+PCV KKA+WALRWI D SF +RV+AFA VEGIFFSG
Sbjct: 121 LESYIKDPDEKNRLFHAIETIPCVAKKAEWALRWI-DGGKSFAQRVVAFACVEGIFFSGV 179
Query: 228 FASIFWLKKRGLMPG 242
SIFWLKKRGLMPG
Sbjct: 180 SCSIFWLKKRGLMPG 194
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 245 FSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
++ E + +D HW LT DE++FI+HVLAFFAASDGIV ENL RF +EVQ+ EAR F
Sbjct: 43 WTAEEVDLSQDTRHWEALTADERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAF 102
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL+++YIKD +E+
Sbjct: 103 YGFQIAIENIHSEMYSLLLESYIKDPDEK 131
>gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
nagariensis]
gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
nagariensis]
Length = 354
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 119/220 (54%), Gaps = 43/220 (19%)
Query: 73 KSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK- 131
++T V +P + + E +LR+NP RF +FPI+Y D+W+ YK+A ASFWT EEVD +
Sbjct: 11 RATSSSVGSPSELD---EAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTGD 67
Query: 132 ----------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
+V+ N R + E + +R Y F+I +
Sbjct: 68 LYDFDHKLKEEERRFIKYVLAFFAASDGIVMENLSARFM--SEVQVPEAR-AFYGFQIAM 124
Query: 164 APGGICRYKVKKGGKITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
Y V + I+T+ V KKADWALRWI+ ++SF ER++AF
Sbjct: 125 ENVHSEMYSVLLDHYVRDPAERRQLFNAIQTIATVGKKADWALRWISS-SNSFAERLVAF 183
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A VEGI FSGSF +IFWLKKR LMPGL+FSN LISRDE L
Sbjct: 184 ACVEGIHFSGSFCAIFWLKKRLLMPGLSFSNCLISRDEGL 223
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H KL +E+ FI +VLAFFAASDGIV ENL RF EVQ+ EAR FYGFQIAMENV
Sbjct: 70 DFDH--KLKEEERRFIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAMENV 127
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS+L+D Y++D ER
Sbjct: 128 HSEMYSVLLDHYVRDPAER 146
>gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
Length = 360
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 124/240 (51%), Gaps = 54/240 (22%)
Query: 54 KDLTNNLQQSKLSDSPIKDKSTL-----KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQ 108
+DL++ + + +KD+ + K++S +Q EP L NP RFV+FPIQ
Sbjct: 17 QDLSSQFVERFVKGIDLKDELEMSEYKRKELSGELQ----PEPYLVANPNRFVLFPIQEH 72
Query: 109 DIWKMYKKAEASFWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKASH 151
D+W+MYKKAEASFWTAEE+DL K V+ F E A +
Sbjct: 73 DVWQMYKKAEASFWTAEELDLVHDLNDWAKLTDNERHFIKHVLAFFAASDGIVNENLAMN 132
Query: 152 SRNEP--------YLFRIKLAPGGICRYKVKKGGKITGG-------KTIETMPCVKKKAD 196
NE Y F+I + Y + I + IET+PCV+KK
Sbjct: 133 FSNEVQIPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIETIPCVQKKHS 192
Query: 197 WALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
ER++AFA+VEGIFFSGSF S+FWLKKRGLMPGL+FSNE+ISRDE +
Sbjct: 193 -------------NERLLAFAAVEGIFFSGSFCSVFWLKKRGLMPGLSFSNEMISRDEGM 239
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL+ W KLT +E++FI HVLAFFAASDGIVNENL F+ EVQI EARCFYGFQIA+EN+
Sbjct: 96 DLNDWAKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQIPEARCFYGFQIAIENI 155
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE+YSLLIDTYIKD E+
Sbjct: 156 HSEVYSLLIDTYIKDAVEK 174
>gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus]
Length = 213
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 245 FSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
++ E + ++L HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ E CF
Sbjct: 107 WTGEEVDLSKNLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCF 166
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 167 YGFQILIENVHSEMYSLLIDTYIRDPKKR 195
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%), Gaps = 3/58 (5%)
Query: 77 KQVSAPVQENV---ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
+Q+ + +ENV EPLLR + RRFVIFPIQY DIW+MYK+A ASFWT EEVDLSK
Sbjct: 59 EQLCSETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSK 116
>gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis
T2Bo]
gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative
[Babesia bovis]
Length = 339
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 125/222 (56%), Gaps = 39/222 (17%)
Query: 70 IKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL 129
+ D + +S+ ++ E +L ++P R ++PI+Y D W+ YKKA+ASFWT+EE+DL
Sbjct: 1 MTDSLSTDDLSSRMKALQSEEFILVEDPNRNGLYPIKYPDFWEWYKKAQASFWTSEEIDL 60
Query: 130 SK----------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRI 161
S +V+ N +R LK + K ++ Y F+I
Sbjct: 61 SSDLKDWGTLTEGEHHFIKNVLAFFAASDGIVLENLALRFLK--DVKLPEAKF-FYCFQI 117
Query: 162 KLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVI 214
+ I +Y + K + IET+ V+ KA WA +W+ DE SF ER++
Sbjct: 118 TVENIHSETYSLLIEQYIRDEAEKDRLFRAIETIDAVRDKAIWAAKWMNDE-KSFAERIV 176
Query: 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+A+VEGIFFSGSF +IFWLKKRGLMPGLTFSNELI+RDE L
Sbjct: 177 AYAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELIARDEGL 218
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 64/88 (72%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
++E I DL W LT E +FI +VLAFFAASDGIV ENL RF ++V++ EA+ FY
Sbjct: 54 TSEEIDLSSDLKDWGTLTEGEHHFIKNVLAFFAASDGIVLENLALRFLKDVKLPEAKFFY 113
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLLI+ YI+D+ E+
Sbjct: 114 CFQITVENIHSETYSLLIEQYIRDEAEK 141
>gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
strain Muguga]
gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative
[Theileria parva]
Length = 308
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 112/202 (55%), Gaps = 39/202 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
E LL NP R +FPI Y + W+ YKKA+ASFWTAEE+D S
Sbjct: 8 EFLLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHWHRLNKDERHFITN 67
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVK 174
+V+ N ++ L+ + + S Y F+I + I Y
Sbjct: 68 VLAFFAASDGIVLENLALKFLRDVKIPEAQSF---YSFQIAVENIHSETYSLLIENYVKD 124
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ K IET+ VK KA+WA +WI DE +SF ER++A+A+VEGI FSGSF ++FWL
Sbjct: 125 EAEKRRLFMAIETIDAVKDKANWAKKWITDE-NSFAERIVAYAAVEGILFSGSFCALFWL 183
Query: 235 KKRGLMPGLTFSNELISRDEDL 256
KKRGLMPGLTFSNELI+RDE L
Sbjct: 184 KKRGLMPGLTFSNELIARDEGL 205
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D +HW++L +DE++FI++VLAFFAASDGIV ENL +F ++V+I EA+ FY F
Sbjct: 43 EEIDFSMDYNHWHRLNKDERHFITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLI+ Y+KD+ E+
Sbjct: 103 QIAVENIHSETYSLLIENYVKDEAEK 128
>gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
virus 86]
gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
virus 86]
Length = 325
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 124/248 (50%), Gaps = 58/248 (23%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK 148
+EPLL +N RFV+FPI ++DI++ YKKAEAS W E+D+S KT K
Sbjct: 2 SEPLLIENKDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTD----------KTDWPK 51
Query: 149 ASHSRNEPYLFRIKLA-----------------------PGGICRYKVK----------- 174
+ NE + + LA P C Y V+
Sbjct: 52 LT--ENEQHFIKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETY 109
Query: 175 ----------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
K + + I T+ +K KADWAL+W+ +E SF ER+IAFA VEGIFF
Sbjct: 110 SMMLQSLVEDKDEQRNLFRAIRTIQSIKNKADWALKWMNNE-RSFAERLIAFAVVEGIFF 168
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIV 284
SG+F +IFWLKKR +MPGLTFSNELISRDE L H + + I H L + D I
Sbjct: 169 SGAFCAIFWLKKRAIMPGLTFSNELISRDEGL-HTDFACMLYRNHIIHKLPYETVLDIIT 227
Query: 285 NENLVERF 292
N +ER
Sbjct: 228 NAVELERL 235
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 61/79 (77%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D + W KLT +E++FI ++LAFFA +DGIV ENLV F E+Q EARCFYG Q+ +ENV
Sbjct: 45 DKTDWPKLTENEQHFIKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENV 104
Query: 315 HSEMYSLLIDTYIKDQEER 333
H+E YS+++ + ++D++E+
Sbjct: 105 HAETYSMMLQSLVEDKDEQ 123
>gi|347481850|gb|AEO97836.1| ribonucleoside-diphosphate reductase small subunit [Emiliania
huxleyi virus 84]
gi|347600475|gb|AEP14962.1| ribonucleoside-diphosphate reductase small subunit [Emiliania
huxleyi virus 88]
Length = 325
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 124/248 (50%), Gaps = 58/248 (23%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK 148
+EPLL +N RFV+FPI ++DI++ YKKAEAS W E+D+S KT K
Sbjct: 2 SEPLLIENEDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTD----------KTDWPK 51
Query: 149 ASHSRNEPYLFRIKLA-----------------------PGGICRYKVK----------- 174
+ NE + + LA P C Y V+
Sbjct: 52 LT--ENEQHFIKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETY 109
Query: 175 ----------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
K + + I T+ +K KADWAL+W+ +E SF ER+IAFA VEGIFF
Sbjct: 110 SMMLQSLVEDKDEQRNLFRAIRTIQSIKNKADWALKWMNNE-RSFAERLIAFAVVEGIFF 168
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIV 284
SG+F +IFWLKKR +MPGLTFSNELISRDE L H + + I H L + D I
Sbjct: 169 SGAFCAIFWLKKRAIMPGLTFSNELISRDEGL-HTDFACMLYRNHIIHKLPYETVLDIIT 227
Query: 285 NENLVERF 292
N +ER
Sbjct: 228 NAVELERL 235
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 61/79 (77%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D + W KLT +E++FI ++LAFFA +DG+V ENLV F E+Q EARCFYG Q+ +ENV
Sbjct: 45 DKTDWPKLTENEQHFIKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENV 104
Query: 315 HSEMYSLLIDTYIKDQEER 333
H+E YS+++ + ++D++E+
Sbjct: 105 HAETYSMMLQSLVEDKDEQ 123
>gi|429966031|gb|ELA48028.1| hypothetical protein VCUG_00451 [Vavraia culicis 'floridensis']
Length = 325
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 110/202 (54%), Gaps = 34/202 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL + ++ +FP+ QD+W+MYK+A +SFWT EEVDLSK +
Sbjct: 7 ESLLTEPKNKYTLFPLTNQDVWQMYKQALSSFWTVEEVDLSKDIDDWNRLNGDERHFISY 66
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK 183
+ N + + E + +R Y F+I + Y + I +
Sbjct: 67 VLAFFAASDGIVNENLLENFSREVQLKEARC-FYGFQIMIENVHSEMYSLLIDTYIKDQE 125
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
I + VK+KA+W +WI D+ S F RVIAFA VEG+FFSGSFASIFWLKK
Sbjct: 126 EKDFLFNAIANINTVKRKAEWCFKWINDKDSDFATRVIAFACVEGLFFSGSFASIFWLKK 185
Query: 237 RGLMPGLTFSNELISRDEDLSH 258
RGLMPGLTFSNELISRDE L +
Sbjct: 186 RGLMPGLTFSNELISRDEGLHY 207
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ WN+L DE++FIS+VLAFFAASDGIVNENL+E F++EVQ+ EARCFYGF
Sbjct: 42 EEVDLSKDIDDWNRLNGDERHFISYVLAFFAASDGIVNENLLENFSREVQLKEARCFYGF 101
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYIKDQEE+
Sbjct: 102 QIMIENVHSEMYSLLIDTYIKDQEEK 127
>gi|392575953|gb|EIW69085.1| hypothetical protein TREMEDRAFT_31348 [Tremella mesenterica DSM
1558]
Length = 446
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 108/196 (55%), Gaps = 48/196 (24%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDL----------------------------- 129
RFV+FPI+Y++IW+ YK ++ASFWTAEE+DL
Sbjct: 113 RFVLFPIRYREIWQAYKASQASFWTAEELDLVHDMHDWNERLTENERFFILRILAFFAAS 172
Query: 130 ----SKVVVTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+ +V F E RA + + +E Y I+ R +K
Sbjct: 173 DGIVGENIVEQFALEVQIAEARAFYSFQSMMEQVHSETYSLLIET----YVRDTQEKDFL 228
Query: 179 ITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRG 238
G IE +PC++KKADWAL++I E F R++AFA VEGIFFSGSFA+IFWLKKRG
Sbjct: 229 FRG---IENIPCIRKKADWALKYITPELP-FRVRLVAFACVEGIFFSGSFAAIFWLKKRG 284
Query: 239 LMPGLTFSNELISRDE 254
LMPGLTFSNELISRDE
Sbjct: 285 LMPGLTFSNELISRDE 300
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Query: 255 DLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
D+ WN +LT +E++FI +LAFFAASDGIV EN+VE+F EVQI EAR FY FQ ME
Sbjct: 146 DMHDWNERLTENERFFILRILAFFAASDGIVGENIVEQFALEVQIAEARAFYSFQSMMEQ 205
Query: 314 VHSEMYSLLIDTYIKDQEER 333
VHSE YSLLI+TY++D +E+
Sbjct: 206 VHSETYSLLIETYVRDTQEK 225
>gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
Length = 323
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 108/208 (51%), Gaps = 48/208 (23%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS--------------------------- 120
E E LLR+N RFVI PI Y IW MYKK EAS
Sbjct: 4 ENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDWANLNDGERHFI 63
Query: 121 -----FWTAEEVDLSKVVVTNF-------EIRALKTGEEKASHSRNEPYLFRIKLAPGGI 168
F+ A + +++ + NF E R+ + + +E Y I
Sbjct: 64 SHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLID------ 117
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
Y K IET+ CVKKKA+WALRWI E SF ER++AFA+VEGIFFSGSF
Sbjct: 118 -TYVKDPVEKDRLFHAIETVECVKKKAEWALRWI--ENGSFAERLVAFAAVEGIFFSGSF 174
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 175 CAIFWLKKRGLMPGLTFSNELISRDEGL 202
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 64/86 (74%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL W L E++FISHVLAFFAASDGIVNENL F EVQ+ EAR FYGF
Sbjct: 41 EEIDLSGDLKDWANLNDGERHFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE Y+LLIDTY+KD E+
Sbjct: 101 QIAMENIHSETYALLIDTYVKDPVEK 126
>gi|282174133|ref|YP_003358235.1| ribonucleotide reductase subunit 2 [Anguillid herpesvirus 1]
gi|281308976|gb|ADA57859.1| ribonucleotide reductase subunit 2 [Anguillid herpesvirus 1]
Length = 328
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 109/203 (53%), Gaps = 39/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA 149
EPLL R V FPI+ IW MYK A+A+ W+AEEVDL++ V T++E R K
Sbjct: 7 EPLLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDV-THWEKRLNKDERHFI 65
Query: 150 SHSR-------------------------NEPYLFRIKLAPGGI-----------CRYKV 173
SH Y + ++A + V
Sbjct: 66 SHVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKDV 125
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K+ ++ +E MPC+ KKA+WA RW D +SFGER++AFA+VEGIFFSG+FA+IFW
Sbjct: 126 KEQDRLFNA--VERMPCIAKKAEWAKRWTHDTNASFGERLVAFAAVEGIFFSGAFAAIFW 183
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LK RG+MPGL SNE ISRDE L
Sbjct: 184 LKPRGIMPGLIMSNEFISRDEGL 206
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
S E + +D++HW K L +DE++FISHVLAFFAA+DG+VN NL +RFTQEVQ EA F
Sbjct: 40 SAEEVDLAQDVTHWEKRLNKDERHFISHVLAFFAAADGLVNANLGQRFTQEVQYLEATYF 99
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y FQ+A+ENVH+EMYS LI T IKD +E+
Sbjct: 100 YNFQMAIENVHAEMYSKLIATLIKDVKEQ 128
>gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712, partial [Chlorella
variabilis]
Length = 214
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 111/206 (53%), Gaps = 47/206 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EP+L+ N RF + P++Y ++ YK+A+AS+WTAEEVDLS+
Sbjct: 2 EPILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWRKLTDDERHFVSY 61
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E RA + +E Y ++ +
Sbjct: 62 VLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLE-------Q 114
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y + ++T+PCV+KKA WA++WI + +S F ER++A+A VEGI FSGSF S
Sbjct: 115 YIRDPDERDLLFHAVDTIPCVQKKAQWAMKWI-ESSSCFAERLVAYACVEGIHFSGSFCS 173
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKR LMPGLTFSNE+ISRDE L
Sbjct: 174 IFWLKKRQLMPGLTFSNEMISRDEGL 199
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 67/88 (76%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ W KLT DE++F+S+VLAFFAASDGIV ENL RF QEVQI EAR FY
Sbjct: 35 TAEEVDLSQDMRDWRKLTDDERHFVSYVLAFFAASDGIVLENLSTRFMQEVQIPEARAFY 94
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
FQ A+E VHSEMY LL++ YI+D +ER
Sbjct: 95 AFQSAIEAVHSEMYGLLLEQYIRDPDER 122
>gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
virus 99B1]
Length = 325
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 124/248 (50%), Gaps = 58/248 (23%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK 148
+EP+L +N RFV+FPI ++DI++ YKKAEAS W E+D+S KT K
Sbjct: 2 SEPILIENEDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTD----------KTDWPK 51
Query: 149 ASHSRNEPYLFRIKLA-----------------------PGGICRYKVK----------- 174
+ NE + + LA P C Y V+
Sbjct: 52 LT--ENEQHFIKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETY 109
Query: 175 ----------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
K + + I T+ +K KADWAL+W+ +E SF ER+IAFA VEGIFF
Sbjct: 110 SMMLQSLVEDKDEQRNLFRAIRTIQSIKNKADWALKWMNNE-RSFAERLIAFAVVEGIFF 168
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIV 284
SG+F +IFWLKKR +MPGLTFSNELISRDE L H + + I H L + D I
Sbjct: 169 SGAFCAIFWLKKRAIMPGLTFSNELISRDEGL-HTDFACMLYRNHIIHKLPYETVLDIIT 227
Query: 285 NENLVERF 292
N +ER
Sbjct: 228 NAVELERL 235
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 61/79 (77%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D + W KLT +E++FI ++LAFFA +DG+V ENLV F E+Q EARCFYG Q+ +ENV
Sbjct: 45 DKTDWPKLTENEQHFIKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENV 104
Query: 315 HSEMYSLLIDTYIKDQEER 333
H+E YS+++ + ++D++E+
Sbjct: 105 HAETYSMMLQSLVEDKDEQ 123
>gi|349603084|gb|AEP99024.1| Ribonucleoside-diphosphate reductase subunit M2-like protein,
partial [Equus caballus]
Length = 261
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 68 AIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 127
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 128 TFSNELISRDEGL 140
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/62 (93%), Positives = 61/62 (98%)
Query: 272 HVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQE 331
HVLAFFAASDGIVNENLVERF+QEVQITEARCFYGFQIAMEN+HSEMYSLLIDTYIKD +
Sbjct: 1 HVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSK 60
Query: 332 ER 333
ER
Sbjct: 61 ER 62
>gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa
Indica Group]
Length = 233
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 107/195 (54%), Gaps = 48/195 (24%)
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------------------V 132
+FPI+Y IW+ YKKA ASFWTAEEVDLS +
Sbjct: 1 MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFVSHVLAFFAASDGI 60
Query: 133 VVTNFEIRAL---KTGEEKASHS--------RNEPYLFRIKLAPGGICRYKVKKGGKITG 181
V+ N R + + E +A + +E Y L R V+K
Sbjct: 61 VLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMY----SLLLETYIRDDVEKDRLF-- 114
Query: 182 GKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMP 241
+ I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF +IFWLKKRGLMP
Sbjct: 115 -RAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMP 172
Query: 242 GLTFSNELISRDEDL 256
GLTFSNELISRDE L
Sbjct: 173 GLTFSNELISRDEGL 187
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + D HW+ L+ DE++F+SHVLAFFAASDGIV ENL RF +VQ+ EAR F
Sbjct: 22 TAEEVDLSADARHWDAALSPDERHFVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAF 81
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 82 YGFQIAIENIHSEMYSLLLETYIRDDVEK 110
>gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti]
gi|108870103|gb|EAT34328.1| AAEL013412-PA [Aedes aegypti]
Length = 244
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 72/80 (90%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
+DL+ W KL EK+FISHVLAFF ASDG +NENLVERF+QE+Q+TEARCFYGFQIAMEN
Sbjct: 147 KDLADWEKLKSGEKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCFYGFQIAMEN 206
Query: 314 VHSEMYSLLIDTYIKDQEER 333
VHSEMYSLLIDTYI+D ++R
Sbjct: 207 VHSEMYSLLIDTYIRDSKQR 226
>gi|347482302|gb|AEO98243.1| ribonucleoside-diphosphate reductase small subunit [Emiliania
huxleyi virus 203]
gi|347601085|gb|AEP15571.1| ribonucleoside-diphosphate reductase small subunit [Emiliania
huxleyi virus 207]
gi|347601558|gb|AEP16043.1| ribonucleoside-diphosphate reductase small subunit [Emiliania
huxleyi virus 208]
gi|357972640|gb|AET97913.1| ribonucleoside-diphosphate reductase small subunit [Emiliania
huxleyi virus 201]
Length = 325
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 124/248 (50%), Gaps = 58/248 (23%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK 148
+EPL+ +N RFV+FPI ++DI++ YKKAEAS W E+D+S KT K
Sbjct: 2 SEPLIIENKDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDIS----------TDKTDWPK 51
Query: 149 ASHSRNEPYLFRIKLA-----------------------PGGICRYKVK----------- 174
+ NE + + LA P C Y V+
Sbjct: 52 LT--ENEQHFIKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETY 109
Query: 175 ----------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
K + + I T+ +K KADWAL+W+ +E SF ER+IAFA VEGIFF
Sbjct: 110 SMMLQSLVEDKDEQRNLFRAIRTIQSIKNKADWALKWMNNE-RSFAERLIAFAVVEGIFF 168
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIV 284
SG+F +IFWLKKR +MPGLTFSNELISRDE L H + + I H L + D I
Sbjct: 169 SGAFCAIFWLKKRAIMPGLTFSNELISRDEGL-HTDFACMLYRNHIIHKLPYETVLDIIT 227
Query: 285 NENLVERF 292
+ +ER
Sbjct: 228 HAVELERL 235
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 61/79 (77%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D + W KLT +E++FI ++LAFFA +DGIV ENLV F E+Q EARCFYG Q+ +ENV
Sbjct: 45 DKTDWPKLTENEQHFIKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENV 104
Query: 315 HSEMYSLLIDTYIKDQEER 333
H+E YS+++ + ++D++E+
Sbjct: 105 HAETYSMMLQSLVEDKDEQ 123
>gi|428672848|gb|EKX73761.1| ribonucleoside-diphosphate reductase small chain, putative [Babesia
equi]
Length = 335
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 119/217 (54%), Gaps = 39/217 (17%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS---- 130
T ++ ++ N E LL +P R ++PI++ D W+ YKKA+ASFWTAEE+D S
Sbjct: 2 TPSTLTLEMKANEADEFLLNPDPLRIGLYPIKFPDFWEWYKKAQASFWTAEEIDFSLDLA 61
Query: 131 ------------------------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG 166
+V+ N ++ L+ + + S Y F+I +
Sbjct: 62 HWNKLTSDERHFISNVLAFFAASDGIVLENLALKFLRDVKLPEAQSF---YSFQIAVENI 118
Query: 167 G-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASV 219
I Y + + + I+T+ VK KA+WA +WI E ++F ER++A+A+V
Sbjct: 119 HSETYSLLIENYIKDEAERTRLFRAIDTIQAVKDKANWAAKWIT-ENNAFAERIVAYAAV 177
Query: 220 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
EGI FSGSF ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 178 EGILFSGSFCALFWLKKRGLMPGLTFSNELISRDEGL 214
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL+HWNKLT DE++FIS+VLAFFAASDGIV ENL +F ++V++ EA+ FY FQIA+EN+
Sbjct: 59 DLAHWNKLTSDERHFISNVLAFFAASDGIVLENLALKFLRDVKLPEAQSFYSFQIAVENI 118
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE YSLLI+ YIKD+ ER
Sbjct: 119 HSETYSLLIENYIKDEAER 137
>gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 112/205 (54%), Gaps = 42/205 (20%)
Query: 90 EPLLRDNPR--RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------------- 131
EP+ R + RF +FPI Y D+W MYK+ ASFWTA+E+DLS
Sbjct: 1 EPICRTDEEGSRFSLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHKKLNPDERHF 60
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+VV N R + E +R Y F++ + Y +
Sbjct: 61 ISMVLAFFAGADGIVVENLAERFCR--EVTVPEARC-FYGFQMAMESIHQETYCLLIDTY 117
Query: 179 ITGGKTIE-------TMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
IT K E T+P V++KA WA R+I +AS F ER++AFA+VEGIFFSGSF +I
Sbjct: 118 ITDPKVRERLFSAHATVPSVERKASWAQRYIGSKAS-FAERLVAFAAVEGIFFSGSFCAI 176
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 177 FWLKKRGLMPGLTFSNELISRDEGL 201
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 250 ISRDEDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
I DLS W+K L DE++FIS VLAFFA +DGIV ENL ERF +EV + EARCFYGFQ
Sbjct: 40 IDLSADLSDWHKKLNPDERHFISMVLAFFAGADGIVVENLAERFCREVTVPEARCFYGFQ 99
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
+AME++H E Y LLIDTYI D + R
Sbjct: 100 MAMESIHQETYCLLIDTYITDPKVR 124
>gi|449017273|dbj|BAM80675.1| ribonucleoside-diphosphate reductase beta chain [Cyanidioschyzon
merolae strain 10D]
Length = 383
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 109/194 (56%), Gaps = 40/194 (20%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------------------- 131
R+ +FPI++ I++ YK+ ASFWTAEE+DL+
Sbjct: 71 RYTLFPIKHPKIFEFYKRHVASFWTAEEIDLAADMDHWRNRLTEAERYFVSHVLAFFAAS 130
Query: 132 --VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG------- 182
+V+ N R ++ E + Y F+I + Y + +
Sbjct: 131 DGIVLENLAERFMRDVEIPEARCF---YGFQIAMENIHSETYSLLIDAYVKDPEERTHLF 187
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ +ETMPCV++KA WA+RWI +AS F ER++AFA+VEGIFFSGSF +IFWLKKRGLMPG
Sbjct: 188 RAMETMPCVRRKAYWAIRWIGSDAS-FQERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPG 246
Query: 243 LTFSNELISRDEDL 256
LTFSNELISRDE L
Sbjct: 247 LTFSNELISRDEGL 260
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E I D+ HW N+LT E+YF+SHVLAFFAASDGIV ENL ERF ++V+I EARCF
Sbjct: 95 TAEEIDLAADMDHWRNRLTEAERYFVSHVLAFFAASDGIVLENLAERFMRDVEIPEARCF 154
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIAMEN+HSE YSLLID Y+KD EER
Sbjct: 155 YGFQIAMENIHSETYSLLIDAYVKDPEER 183
>gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
reinhardtii]
gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
reinhardtii]
Length = 493
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 116/221 (52%), Gaps = 49/221 (22%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
E LLR+NP RF +FPI+Y D+W+ YK+ ASFWT EEVD +
Sbjct: 167 EDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLIDWHRLKPEEQRFIKY 226
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITG 181
+V+ N R + + + + Y F+I + Y V +
Sbjct: 227 VLAFFAASDGIVMENLAARFMSDIQVPEARAF---YGFQIAMENVHSEMYSVLLDHYVRE 283
Query: 182 GK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWL 234
+ I T+P V KKA+WA+RWI+ ++ F ER++ FA VEGI FSGSF SIFWL
Sbjct: 284 PEERNQLFDAIHTIPTVAKKAEWAMRWISS-SNVFAERLVGFACVEGIHFSGSFCSIFWL 342
Query: 235 KKRGLMPGLTFSNELISRDEDL---------SHW-NKLTRD 265
KKR LMPGL+FSN LISRDE L SH N+L+R+
Sbjct: 343 KKRCLMPGLSFSNVLISRDEGLHCDFACCLYSHLKNRLSRE 383
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 64/79 (81%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL W++L +E+ FI +VLAFFAASDGIV ENL RF ++Q+ EAR FYGFQIAMENV
Sbjct: 209 DLIDWHRLKPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENV 268
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS+L+D Y+++ EER
Sbjct: 269 HSEMYSVLLDHYVREPEER 287
>gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum]
Length = 230
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 108/204 (52%), Gaps = 39/204 (19%)
Query: 71 KDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
KD S KQ S ++ +E EPLL+ NP RFV+FPI+Y DIW YKKA ASFWT EEVDLS
Sbjct: 22 KDVSYGKQFSVS-KDEIELEPLLKPNPHRFVLFPIEYHDIWHFYKKAVASFWTVEEVDLS 80
Query: 131 KVVVTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIK 162
K T++E +LK GE E+ S P Y +I
Sbjct: 81 K-DFTHWE--SLKVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIA 137
Query: 163 LAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIA 215
+ Y + I K I + CV KKA WAL WI D S+F ER++A
Sbjct: 138 IENIHSEMYSLLIDTYIKDSKERDFLFNAISNLTCVAKKAQWALDWIGDSKSTFAERLVA 197
Query: 216 FASVEGIFFSGSFASIFWLKKRGL 239
FA+VEG+FFSGSFA+IFWLK L
Sbjct: 198 FAAVEGVFFSGSFAAIFWLKSEDL 221
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D +HW L E++FIS+VLAFFAASDGIV ENL+ERF+QEVQI E RCFYG
Sbjct: 75 EEVDLSKDFTHWESLKVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGM 134
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLLIDTYIKD +ER
Sbjct: 135 QIAIENIHSEMYSLLIDTYIKDSKER 160
>gi|403182337|gb|EJY57322.1| AAEL017375-PA [Aedes aegypti]
Length = 373
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 72/80 (90%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
+DL+ W KL EK+FISHVLAFF ASDG +NENLVERF+QE+Q+TEARCFYGFQ+AMEN
Sbjct: 120 KDLADWEKLKSGEKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCFYGFQMAMEN 179
Query: 314 VHSEMYSLLIDTYIKDQEER 333
VHSEMYSLLIDTYI+D ++R
Sbjct: 180 VHSEMYSLLIDTYIRDSKQR 199
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 56/78 (71%), Gaps = 6/78 (7%)
Query: 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLT 263
D+ ++FGERV+AFA VE IFFSGSFASI WLKKRGL PGLTFS ELISRDE L H ++
Sbjct: 200 DKKANFGERVVAFAVVEEIFFSGSFASINWLKKRGLTPGLTFSYELISRDEGL-HMEFVS 258
Query: 264 RDEKYFIS-----HVLAF 276
KY + HV+ F
Sbjct: 259 LMFKYLVQKPSQEHVIEF 276
>gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2]
Length = 387
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 110/200 (55%), Gaps = 37/200 (18%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------- 131
P+L RF +FPI+++++W +YKKA+ S WTAEE+D SK
Sbjct: 74 PMLLPTLSRFTVFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDWNGLSDNEKHFIKYI 133
Query: 132 ---------VVVTNF------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKG 176
+V N EI+ + A + NE + + I +Y
Sbjct: 134 LAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQAHNE--MVHGETYSKLIDKYIKSST 191
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + I+T+PC+++KA WA++W D+ F ER++AFA VEGIFFSGSF +I+WLKK
Sbjct: 192 EKNQLFEAIQTIPCIERKAKWAMKWF-DKKRPFAERLLAFACVEGIFFSGSFCAIYWLKK 250
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGL+PGL FSNELISRDE +
Sbjct: 251 RGLLPGLCFSNELISRDEGM 270
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 234 LKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFT 293
L K+ M T E I +D+ WN L+ +EK+FI ++LAFFA SDGIV EN+ F
Sbjct: 96 LYKKAQMSNWT--AEEIDFSKDMDDWNGLSDNEKHFIKYILAFFAGSDGIVFENINNNFA 153
Query: 294 QEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
E+Q+TEAR FY +Q E VH E YS LID YIK E+
Sbjct: 154 DEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSSTEK 193
>gi|397643211|gb|EJK75718.1| hypothetical protein THAOC_02551 [Thalassiosira oceanica]
Length = 466
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 110/203 (54%), Gaps = 35/203 (17%)
Query: 88 ETEPL-LRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV-----TNFEIR- 140
E EP+ + D+ RRF +FPI+Y D+W +YK+ ASFWTA+E+DLS + N + R
Sbjct: 134 EREPICVDDDGRRFSLFPIEYPDLWSLYKQHVASFWTADEIDLSADLTHWNNKLNSDERH 193
Query: 141 ------ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------- 186
A G + R P C Y + + +T
Sbjct: 194 FISMVLAFFAGADGIVMENLVERFCREVTVPEARCFYGFQMAMESIHQETYSLLIDSYID 253
Query: 187 -------------TMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
T+P V++KA WA ++I A+ F ER+IAFA+VEGIFFSGSF +IFW
Sbjct: 254 DPKEREVLFSAHSTVPSVERKAIWAQKYIGSNAT-FAERLIAFATVEGIFFSGSFCAIFW 312
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 313 LKKRGLMPGLTFSNELISRDEGL 335
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 250 ISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
I DL+HWN KL DE++FIS VLAFFA +DGIV ENLVERF +EV + EARCFYGFQ
Sbjct: 174 IDLSADLTHWNNKLNSDERHFISMVLAFFAGADGIVMENLVERFCREVTVPEARCFYGFQ 233
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
+AME++H E YSLLID+YI D +ER
Sbjct: 234 MAMESIHQETYSLLIDSYIDDPKER 258
>gi|426353448|ref|XP_004044206.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Gorilla gorilla gorilla]
Length = 96
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/71 (87%), Positives = 68/71 (95%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 18 AIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 77
Query: 244 TFSNELISRDE 254
TFSNELISRDE
Sbjct: 78 TFSNELISRDE 88
>gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 409
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 121/228 (53%), Gaps = 46/228 (20%)
Query: 69 PIKDKSTLKQVSAPVQENVETEPLLR--DNPRRFVIFPIQYQDIWKMYKKAEASFWTAEE 126
P + + +A +E EP+ + D+ RF +FPI++ D+W MYK+ ASFWT +E
Sbjct: 61 PETRGGSTRSKTAEEEEATFIEPVCQHDDSGSRFSLFPIEHDDLWGMYKQHVASFWTVDE 120
Query: 127 VDLSK-----------------------------VVVTNFEIRALKTGEEKASHSRNEPY 157
+DLS +VV N R + E +R
Sbjct: 121 IDLSADLTDWHERLNDNERHFISMVLAFFAGADGIVVENLAERFCR--EVTVPEARA--- 175
Query: 158 LFRIKLAPGGICR--YKVKKGGKITGGKTIETM-------PCVKKKADWALRWIADEASS 208
+ ++A GI + Y + I+ K E + P V+KKA WA R+I +AS
Sbjct: 176 FYGFQMAMEGIHQETYCLLIDSYISDPKDREMLFAAHTKVPSVEKKARWAQRYIGSDAS- 234
Query: 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ER++AFA+VEGIFFSG+F SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 235 FAERLVAFAAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGL 282
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 250 ISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
I DL+ W+ +L +E++FIS VLAFFA +DGIV ENL ERF +EV + EAR FYGFQ
Sbjct: 121 IDLSADLTDWHERLNDNERHFISMVLAFFAGADGIVVENLAERFCREVTVPEARAFYGFQ 180
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
+AME +H E Y LLID+YI D ++R
Sbjct: 181 MAMEGIHQETYCLLIDSYISDPKDR 205
>gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae]
Length = 213
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 106/187 (56%), Gaps = 41/187 (21%)
Query: 106 QYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK------ASHSRNEPYLF 159
Q+ D+W+MYKK EASFWTAEE+DLSK N + +L + E+ A + ++ +
Sbjct: 1 QHADLWEMYKKHEASFWTAEEIDLSK---DNVDWESLTSSEQHFIKHVLAFFAASDGIVL 57
Query: 160 RIKLAPGGICRYKVKKGGKITGGK------------------------------TIETMP 189
LA C +V + G + IETMP
Sbjct: 58 E-NLAGQFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMP 116
Query: 190 CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 249
V +KA WA++W+ E +SF ER++AFA+VEGI FSGSF +I+WLKKRGLMPGLTFSNEL
Sbjct: 117 AVAEKAKWAVQWMQRE-NSFTERLVAFAAVEGILFSGSFCAIYWLKKRGLMPGLTFSNEL 175
Query: 250 ISRDEDL 256
ISRDE L
Sbjct: 176 ISRDEGL 182
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 66/89 (74%)
Query: 245 FSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
++ E I +D W LT E++FI HVLAFFAASDGIV ENL +F E+Q+ EAR F
Sbjct: 17 WTAEEIDLSKDNVDWESLTSSEQHFIKHVLAFFAASDGIVLENLAGQFACEIQVPEARAF 76
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIAMEN+HSE YSLLI+ YIK+ +E+
Sbjct: 77 YGFQIAMENIHSETYSLLIEQYIKEPQEK 105
>gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
reductase small chain [Theileria annulata]
gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
reductase small chain, putative [Theileria annulata]
Length = 322
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 118/231 (51%), Gaps = 53/231 (22%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--- 131
T+ +S ++ E +L NP R +FPI Y D W+ YKKA+ASFWTAEE+D S
Sbjct: 2 TMSTLSEKMKALEAEEFILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYN 61
Query: 132 -------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG 166
+V+ N ++ L+ + + S Y F+I +
Sbjct: 62 HWHKLNKDERHFITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSF---YSFQIAVENI 118
Query: 167 G-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVI----- 214
I Y + K IET+ VK KA+WA +WI DE +SF ER++
Sbjct: 119 HSETYSLLIENYVKDEAEKRRLFMAIETIDAVKDKANWAKKWITDE-NSFAERIVSNFKN 177
Query: 215 ---------AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+A+VEGI FSGSF ++FWLKKRGLMPGLTFSNELI+RDE L
Sbjct: 178 KLINYYRIVAYAAVEGILFSGSFCALFWLKKRGLMPGLTFSNELIARDEGL 228
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D +HW+KL +DE++FI++VLAFFAASDGIV ENL +F ++V+I EA+ FY F
Sbjct: 52 EEIDFSMDYNHWHKLNKDERHFITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLI+ Y+KD+ E+
Sbjct: 112 QIAVENIHSETYSLLIENYVKDEAEK 137
>gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
Length = 255
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 103/176 (58%), Gaps = 35/176 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL++NP RFV+FP++Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 79 EPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDERYFIS 138
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG 182
+ N + +GE + +R Y F+I + Y + I
Sbjct: 139 HVLAFFAASDGIVNENLVERFSGEVQVPEARCF-YGFQIMMENIHSETYSLLIDTYIKEP 197
Query: 183 K-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
K IET+PC++KKADWA+RWI D+ S+F +R++AFA+VEGIFFSGSFASI
Sbjct: 198 KQRTYLFDAIETIPCIRKKADWAIRWIEDKDSTFAQRLVAFAAVEGIFFSGSFASI 253
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DE+YFISHVLAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 114 EEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYG 173
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ ++R
Sbjct: 174 FQIMMENIHSETYSLLIDTYIKEPKQR 200
>gi|193206379|ref|NP_500944.2| Protein F58F9.1 [Caenorhabditis elegans]
gi|373254185|emb|CCD67640.1| Protein F58F9.1 [Caenorhabditis elegans]
Length = 581
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 104/200 (52%), Gaps = 42/200 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL N RFV+ PI ++DIW+ YKKA A FWT+EEVDL K
Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWEILTSDERQFISS 366
Query: 132 ----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR---------YK 172
+V N R + E + + +R + + ++A I Y
Sbjct: 367 ILAFFAASDGIVTENLCSRF--STEVQVTEAR---FFYGFQIAVENIHSEMYAKLLEAYI 421
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ I T +K KADW LRWI+D + F ER+ A A+VEGIFFS SFA+IF
Sbjct: 422 RDDAERNILFNAITTFKFIKAKADWCLRWISDHNAPFSERLAAVAAVEGIFFSSSFAAIF 481
Query: 233 WLKKRGLMPGLTFSNELISR 252
WLKKRGL+PGLT SNELISR
Sbjct: 482 WLKKRGLLPGLTHSNELISR 501
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 70/88 (79%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
++E + +D+SHW LT DE+ FIS +LAFFAASDGIV ENL RF+ EVQ+TEAR FY
Sbjct: 340 TSEEVDLGKDMSHWEILTSDERQFISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFY 399
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMY+ L++ YI+D ER
Sbjct: 400 GFQIAVENIHSEMYAKLLEAYIRDDAER 427
>gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium
albo-atrum VaMs.102]
gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium
albo-atrum VaMs.102]
Length = 414
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN K+ DEKYFISH+LAFFAASDGIVNENLVERF+ EVQ+ EARCFYG
Sbjct: 116 EEIDLSKDLHDWNNKINDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYG 175
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 176 FQIMMENIHSETYSLLIDTYIKEPAQR 202
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 65/73 (89%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I+T+PC++KKADWAL WI D+ S+F R++AFA VEGIFFSG+FASIFWLKKRGLMPGL
Sbjct: 208 AIDTIPCIRKKADWALTWITDKKSTFATRLVAFAVVEGIFFSGAFASIFWLKKRGLMPGL 267
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 268 TFSNELISRDEGL 280
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Query: 77 KQVSAPVQENVET-EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
K V AP ++ E EPLLR+N +RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK
Sbjct: 67 KAVVAPGIKDFEADEPLLRENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 122
>gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
Length = 313
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 102/191 (53%), Gaps = 33/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------------------- 131
R V+FPIQ+ D+W+ YK+A W EEVDLSK
Sbjct: 5 RKVLFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDFTSKLNDDERYFIKHVLAFFAAA 64
Query: 132 ---VVVTNFEIRALKTGEEKASHSRNEPYLF---RIKLAPGGICRYKVKKGGKITGGKTI 185
V + E E +A + N+ L ++ I + + + T
Sbjct: 65 DSIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLNAF 124
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
E MPCV+KK DWA++WI ++F ER++AFA VEG+FFSGSFA+IF++K +G+MPGLTF
Sbjct: 125 ERMPCVRKKTDWAMKWINSSTATFAERMVAFAIVEGVFFSGSFAAIFYIKTKGIMPGLTF 184
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 185 SNELISRDEGL 195
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+S+D D +KL DE+YFI HVLAFFAA+D IVN NL+E Q V EA+ FY Q+
Sbjct: 35 LSKDCD-DFTSKLNDDERYFIKHVLAFFAAADSIVNINLIEYMQQNVPELEAQYFYNQQV 93
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+E VH+EMY+LLI I D+ ER
Sbjct: 94 LIECVHTEMYNLLIHQLISDEHER 117
>gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens]
Length = 393
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 34/195 (17%)
Query: 94 RDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------VVVTN 136
RD+ RF +FPI+ +W MYK+AEASFWTAEEVDL + V+
Sbjct: 77 RDS-SRFTLFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQLDEGERYFLSRVLAF 135
Query: 137 FEIR---ALKTGEEKASHSRNEP---YLFRIKLAPGGICR---------YKVKKGGKITG 181
F L+ E+ + P + + + A G+ + Y G +
Sbjct: 136 FAASDGIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREAL 195
Query: 182 GKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMP 241
+ + MPCVK KADWA++W A +A + R++AFA+VEG+FFSGSF +IFWL+KRG++P
Sbjct: 196 TRAHDLMPCVKAKADWAMKWTASDAP-YAARLLAFAAVEGVFFSGSFCAIFWLRKRGILP 254
Query: 242 GLTFSNELISRDEDL 256
GL F+NELISRDE L
Sbjct: 255 GLGFANELISRDEGL 269
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 65/88 (73%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D HW +L E+YF+S VLAFFAASDGIV ENLVERF QEV + EAR FY
Sbjct: 105 TAEEVDLGQDKQHWEQLDEGERYFLSRVLAFFAASDGIVLENLVERFAQEVTLPEARFFY 164
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
FQ A+E VH EMYSLL++TY++D ER
Sbjct: 165 AFQGAIEGVHQEMYSLLLETYVEDPGER 192
>gi|393245978|gb|EJD53487.1| ribonucleotide reductase small subunit [Auricularia delicata
TFB-10046 SS5]
Length = 410
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 69/73 (94%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I+T+PC+K+KA+WALRWI D+ S+FGER+IAFA+VEGIFFSG+FASIFWLKKRGLMPGL
Sbjct: 205 AIDTIPCIKRKAEWALRWITDQDSTFGERLIAFAAVEGIFFSGAFASIFWLKKRGLMPGL 264
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE +
Sbjct: 265 TFSNELISRDEGM 277
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Query: 254 EDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL W NKL +E++FISH+LAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI ME
Sbjct: 119 KDLHDWENKLNDNERHFISHILAFFAASDGIVNENLVERFSNEVQCAEARCFYGFQIMME 178
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N+HSE YSLLIDTYIKD R
Sbjct: 179 NIHSETYSLLIDTYIKDPARR 199
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 68 SPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV 127
+P+ + ++ V N + EPLL ++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+
Sbjct: 56 APVSRLGSGRKFVGDVDINEKDEPLLTESRRRFVLFPIQYHEIWQMYKKAEASFWTAEEM 115
Query: 128 DLSK 131
DLSK
Sbjct: 116 DLSK 119
>gi|395217260|ref|ZP_10401555.1| ribonucleoside-diphosphate reductase [Pontibacter sp. BAB1700]
gi|394455057|gb|EJF09607.1| ribonucleoside-diphosphate reductase [Pontibacter sp. BAB1700]
Length = 295
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 102/179 (56%), Gaps = 40/179 (22%)
Query: 113 MYKKAEASFWTAEEVDLSK----------------------------VVVTNFEIRALKT 144
MYKKAEASFWTAEE+DLS+ +V N I ++
Sbjct: 1 MYKKAEASFWTAEEIDLSQDQKDWENLNDGERHFISHVLAFFAASDGIVNENLAINFMQ- 59
Query: 145 GEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADW 197
E + +R Y F+I + I Y K+ K +ET+PCVKKK +W
Sbjct: 60 -EVQLPEARC-FYGFQIMMENIHSETYSLLIDTYIKKQSEKDYLFNALETVPCVKKKGEW 117
Query: 198 ALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AL+WI E F ER+IAFA+VEGIFFSGSF SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 118 ALKWINSE--KFVERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGL 174
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 65/86 (75%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D W L E++FISHVLAFFAASDGIVNENL F QEVQ+ EARCFYGF
Sbjct: 13 EEIDLSQDQKDWENLNDGERHFISHVLAFFAASDGIVNENLAINFMQEVQLPEARCFYGF 72
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN+HSE YSLLIDTYIK Q E+
Sbjct: 73 QIMMENIHSETYSLLIDTYIKKQSEK 98
>gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus]
Length = 150
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 68/73 (93%), Gaps = 1/73 (1%)
Query: 188 MPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSN 247
MPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASI WLKKRGLMPGLTFSN
Sbjct: 1 MPCVKKKADWALRWIGDKEAAYGERVVAFAAVEGIFFSGSFASILWLKKRGLMPGLTFSN 60
Query: 248 ELISRDEDLSHWN 260
ELISRDE L HW+
Sbjct: 61 ELISRDEGL-HWD 72
>gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus
floridanus]
Length = 343
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 116/230 (50%), Gaps = 56/230 (24%)
Query: 62 QSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASF 121
+S LS + K LK+ + N E EPLL++ P RFVIFPIQY DIW MYKKA ASF
Sbjct: 39 KSGLSKTKAVQKVQLKE-----EFNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASF 93
Query: 122 WTAEEVDLSKVV----------------------------VTNFEIRALKTGEEKASHSR 153
WT EEV L K+ + N + + E K + +R
Sbjct: 94 WTIEEVPLHKLDKKDWEEKLNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEAR 153
Query: 154 NEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEA 206
Y F+I + Y + I+ K IET+P V KKA+WAL WI E+
Sbjct: 154 CF-YGFQIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINHES 212
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
++F ERV+A IFWLKKRG+MPGLTFSNELISRDE L
Sbjct: 213 ATFPERVVA---------------IFWLKKRGVMPGLTFSNELISRDEGL 247
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 68/73 (93%)
Query: 261 KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320
KL DE+YFISHVLAFFAASDGIVNENL+ERF+QEV+I EARCFYGFQIA+EN+HSEMYS
Sbjct: 112 KLNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYS 171
Query: 321 LLIDTYIKDQEER 333
LLI+TYI D +E+
Sbjct: 172 LLIETYISDPKEK 184
>gi|403277257|ref|XP_003930289.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Saimiri boliviensis boliviensis]
Length = 668
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 71/84 (84%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +D+ HW L + +YFISHVLAFFAAS GIVNENLVERF+QEVQITEA CFYGFQ+
Sbjct: 386 VDLSKDVWHWESLKPEGRYFISHVLAFFAASYGIVNENLVERFSQEVQITEAHCFYGFQM 445
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AM+N+HSE+YSLLIDTYIKD ER
Sbjct: 446 AMKNIHSEIYSLLIDTYIKDPNER 469
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 64/73 (87%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMPCVKKKADWAL W+ D+ +++GE V AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 475 AIETMPCVKKKADWALLWVGDKEATYGEHVAAFAAVEGIFFSGSFASIFWLKKRGLMPGL 534
Query: 244 TFSNELISRDEDL 256
TFSNEL RDE L
Sbjct: 535 TFSNELTGRDEGL 547
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
++ EPLLR+NP FVIFPI+Y DIW+ YKK EASFWT +EVDLSK V
Sbjct: 346 MQDEPLLRENPHHFVIFPIEYPDIWQTYKKGEASFWTTKEVDLSKDV 392
>gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus]
Length = 139
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 67/73 (91%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCVKKKADWAL WI ++ + FGERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 13 AVETLPCVKKKADWALNWIGNKDAQFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 72
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 73 TFSNELISRDEGL 85
>gi|392558190|gb|EIW51392.1| putative ribonucleoside-diphosphate reductase small chain B
[Trametes versicolor FP-101664 SS1]
Length = 331
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 110/203 (54%), Gaps = 39/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA 149
+ +L+ + RF+++PI+Y +IW YK A+ASFWTA+E+DLS V ++ R T EE+A
Sbjct: 7 DAILKPSTSRFILYPIKYPEIWDAYKTAQASFWTADEIDLS-ADVRHWTCRL--TDEERA 63
Query: 150 SHS------------RNEPYLFRIKL---APGGICRYKVKKGGKITGGKTIETM------ 188
S NE L R P C Y + + +T +M
Sbjct: 64 FISILLAFFAASDGMVNENLLERFCAEVQIPEARCFYGFQIMMENIHAETYASMLTTLIQ 123
Query: 189 ---------------PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
P +K KA+W +RWI D+ F R+IAFA+VEGIFFS SFA+IFW
Sbjct: 124 DNAERDRLFSATSTIPAIKAKAEWTMRWIEDKHQPFAVRLIAFAAVEGIFFSSSFAAIFW 183
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
L+ RGL+PG+ SNELI+RDE +
Sbjct: 184 LRSRGLLPGICHSNELIARDESM 206
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 250 ISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
I D+ HW +LT +E+ FIS +LAFFAASDG+VNENL+ERF EVQI EARCFYGFQ
Sbjct: 44 IDLSADVRHWTCRLTDEERAFISILLAFFAASDGMVNENLLERFCAEVQIPEARCFYGFQ 103
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
I MEN+H+E Y+ ++ T I+D ER
Sbjct: 104 IMMENIHAETYASMLTTLIQDNAER 128
>gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit, partial
[Drosophila melanogaster]
Length = 214
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 68/73 (93%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VK+KADWAL WI+ ++++FGER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 52 AIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGL 111
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 112 TFSNELISRDEGL 124
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 44/46 (95%)
Query: 288 LVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
LVERF+QEVQITEARCFYGFQIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 1 LVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQR 46
>gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida
dubliniensis CD36]
gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida
dubliniensis CD36]
Length = 394
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 112/199 (56%), Gaps = 35/199 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT----------NFEI 139
EPLL + R I+PI+Y ++W+ YKK+ ASFWTAEE+DLSK + F
Sbjct: 71 EPLLTKDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWNNKMNENERFFIS 130
Query: 140 RAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKT----IETMPCVK 192
R L + + + E + +++ P YK + + +T IET
Sbjct: 131 RVLAFFAASDGIVNENLVENFCAEVQI-PEAQSVYKFQIMMENIHSETYSLLIETYFKDP 189
Query: 193 KKADW-----------------ALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
++AD+ A+RWI DE + + ER++AFA+VEGIFFSGSFA+IFWLK
Sbjct: 190 EEADFLFNAIENIPFIREKADWAIRWIQDEDALYAERLVAFAAVEGIFFSGSFAAIFWLK 249
Query: 236 KRGLMPGLTFSNELISRDE 254
KRGLMPGLTFSNELI RDE
Sbjct: 250 KRGLMPGLTFSNELICRDE 268
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 74/111 (66%), Gaps = 14/111 (12%)
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASD 281
F+ S AS FW + E + +DL+ WN K+ +E++FIS VLAFFAASD
Sbjct: 94 FYKKSLAS-FW------------TAEELDLSKDLADWNNKMNENERFFISRVLAFFAASD 140
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEE 332
GIVNENLVE F EVQI EA+ Y FQI MEN+HSE YSLLI+TY KD EE
Sbjct: 141 GIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLIETYFKDPEE 191
>gi|384251438|gb|EIE24916.1| hypothetical protein COCSUDRAFT_47007 [Coccomyxa subellipsoidea
C-169]
Length = 451
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 107/191 (56%), Gaps = 43/191 (22%)
Query: 103 FPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------------------VVV 134
++Y+DI++MYKKA ASFWT EEVDLS+ +V+
Sbjct: 22 LAVRYRDIFEMYKKAVASFWTVEEVDLSQDIRDWEKLSDDERHFIMHVLAFFAASDGIVM 81
Query: 135 TNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYK---------VKKGGKITGGKTI 185
N +R + E + +R Y F+I + Y V++ K+ + I
Sbjct: 82 ENLAVRFMS--EVQIPEAR-AFYGFQIAIENVHSEMYSLLLEHYIRDVEQKDKML--RAI 136
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
+T+PCV KKA+WA RWI SSF ER++ FA VEGI FSGSF +IFWLKKR LMPGLTF
Sbjct: 137 QTVPCVAKKAEWAQRWIGS-GSSFAERLVGFACVEGIHFSGSFCAIFWLKKRLLMPGLTF 195
Query: 246 SNELISRDEDL 256
SNEL+SRDE L
Sbjct: 196 SNELVSRDEGL 206
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ W KL+ DE++FI HVLAFFAASDGIV ENL RF EVQI EAR FYGF
Sbjct: 44 EEVDLSQDIRDWEKLSDDERHFIMHVLAFFAASDGIVMENLAVRFMSEVQIPEARAFYGF 103
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+ENVHSEMYSLL++ YI+D E++
Sbjct: 104 QIAIENVHSEMYSLLLEHYIRDVEQK 129
>gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus]
Length = 219
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I+ +PCVKKKADWAL WI+ + ++FGERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 26 AIDNLPCVKKKADWALNWISSKQANFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGL 85
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 86 TFSNELISRDEGL 98
>gi|374288410|ref|YP_005035495.1| putative ribonucleoside-diphosphate reductase small chain subunit
[Bacteriovorax marinus SJ]
gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit
[Bacteriovorax marinus SJ]
Length = 322
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 131/268 (48%), Gaps = 44/268 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFE---------IR 140
+P+L N RFV+FP++Y I++MYK A FWTA+E+D + + T++E I+
Sbjct: 2 DPILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDI-TDWEKLNKDEQHFIK 60
Query: 141 ALKTGEEKASHSRNEPYLFRIK---LAPGGICRYKVKKGGKITGGKT------------- 184
+ + NE R P C Y + + +T
Sbjct: 61 HILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDPK 120
Query: 185 --------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
+ P V+KKADWA++W+ + SF ER+IAFA++EGIFFSGSF SI+WLKK
Sbjct: 121 EKDELFHAVTHFPFVEKKADWAMKWMQSK-RSFAERLIAFAAIEGIFFSGSFCSIYWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEV 296
RGLMPGL SNE ISRDE L F H+ + + E + + T+ V
Sbjct: 180 RGLMPGLCTSNEFISRDEGL---------HCEFACHIHELLTPEEQLNKETITQIITEAV 230
Query: 297 QITEARCFYGFQIAMENVHSEMYSLLID 324
I + +++ ++++M S I+
Sbjct: 231 SIEKEFITEAIPVSLIGMNADMMSRYIE 258
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASD 281
+ F + SIF + K + + ++ + + D++ W KL +DE++FI H+LAFFAASD
Sbjct: 13 VLFPLKYHSIFEMYKNHM--AVFWTADELDFASDITDWEKLNKDEQHFIKHILAFFAASD 70
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
GIVNENL RF +VQI EARCFYGFQIAMEN+HSE YSLLIDTY+KD +E+
Sbjct: 71 GIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDPKEK 122
>gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene
[Cryptosporidium parvum Iowa II]
gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum]
gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene
[Cryptosporidium parvum Iowa II]
Length = 352
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 116/221 (52%), Gaps = 39/221 (17%)
Query: 71 KDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
KD+ ++++ V+ N EP+L+ + +DIW MYKKAEASFW EE+DLS
Sbjct: 15 KDEENIEKLVNEVKINQVNEPMLKYSRENRNELKELIKDIWSMYKKAEASFWVTEEIDLS 74
Query: 131 K----------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIK 162
+ +V+ N + L+ E + +R Y F++
Sbjct: 75 QDTRDWESLKDPERHFIKYVLAFFAASDGIVMENLAVNFLR--EIQIPEARM-YYAFQMS 131
Query: 163 LAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIA 215
+ I RY + + + I + VKKKA+WA +W+ E SF ER+I
Sbjct: 132 IEQIHSETYSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWMNSE-RSFAERIIG 190
Query: 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +VEGI FSGSF +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 191 FCAVEGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 231
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 60/86 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D W L E++FI +VLAFFAASDGIV ENL F +E+QI EAR +Y F
Sbjct: 69 EEIDLSQDTRDWESLKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAF 128
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+++E +HSE YSLLID YI + +ER
Sbjct: 129 QMSIEQIHSETYSLLIDRYITEIKER 154
>gi|349802205|gb|AEQ16575.1| putative ribonucleotide reductase m2 polypeptide [Pipa carvalhoi]
Length = 131
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 68/73 (93%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCVKKKADWALRWI D+ +++GERV+AFA+V GIFFSGSFASIFWLKKRGLMPGL
Sbjct: 4 AIETLPCVKKKADWALRWIGDKQATYGERVVAFAAV-GIFFSGSFASIFWLKKRGLMPGL 62
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 63 TFSNELISRDEGL 75
>gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
Length = 313
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 40/198 (20%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------------------- 131
R V+FPIQ+ D+W YK+A W EEVDLSK
Sbjct: 5 RKVLFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDFTQKLTDNERNFIEKILAFFAAA 64
Query: 132 ---VVVTNFEIRALKTGEEKASHSRNEPYLFRI------KLAPGGICRYKVKKGGKITGG 182
V + E E +A + N+ L L + + + K+ + G
Sbjct: 65 DSIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLNG- 123
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
E+MPCV++KA+WA+++I +E + ER+IAFA VEG+FFSGSFA+IF++K +G+MPG
Sbjct: 124 --FESMPCVRRKAEWAMKYIENENVTLAERLIAFAIVEGVFFSGSFAAIFYMKTKGVMPG 181
Query: 243 LTFSNELISRDEDLSHWN 260
LTFSNELISRDE L H N
Sbjct: 182 LTFSNELISRDEGL-HTN 198
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+S+D D KLT +E+ FI +LAFFAA+D IVN N++E + V EA+ FY Q+
Sbjct: 35 LSKDYD-DFTQKLTDNERNFIEKILAFFAAADSIVNINIIEHMQRTVPELEAQYFYNQQV 93
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+E +H+EMY+LLI IKD+E++
Sbjct: 94 LIECIHTEMYNLLIHALIKDEEKQ 117
>gi|422294918|gb|EKU22218.1| ribonucleoside-diphosphate reductase subunit M2 [Nannochloropsis
gaditana CCMP526]
Length = 297
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 95/176 (53%), Gaps = 32/176 (18%)
Query: 113 MYKKAEASFWTAEEVDLS-----------------KVVVTNFEIRALKTGEEKASHSRNE 155
MYK+AEASFWTAEE+DL+ V+ F E A + NE
Sbjct: 1 MYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNE 60
Query: 156 PYLFRIKLAPGG---------------ICRYKVKKGGKITGGKTIETMPCVKKKADWALR 200
L + G I Y K IET+PCV++KA WALR
Sbjct: 61 IQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALR 120
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
W + +SF ER+IAFA+VEGIFFSGSF SIFWLKKRGLMPGL FSNELISRDE L
Sbjct: 121 WCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGL 176
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 70/83 (84%), Gaps = 4/83 (4%)
Query: 255 DLSH----WNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIA 310
DL+H W KLT +E++F+SHVLAFFAASDGIVNENL F+ E+Q+ EARCFYGFQIA
Sbjct: 16 DLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIA 75
Query: 311 MENVHSEMYSLLIDTYIKDQEER 333
+EN+HSE+YSLLIDTYIK+ E+
Sbjct: 76 IENIHSEVYSLLIDTYIKNPSEK 98
>gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
echinatior]
Length = 176
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAAS 280
+ F + I+ + K+ + T E+ +D WN KL DEK FISHVLAFFAAS
Sbjct: 65 VIFPIQYPDIWDMYKKAVASFWTIE-EVSLHKQDKKDWNEKLNSDEKRFISHVLAFFAAS 123
Query: 281 DGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
DGIVNENL+E+F+QEV+I EARCFYGFQIA+EN+HSEMYSLLI+TYI D +E+
Sbjct: 124 DGIVNENLIEKFSQEVKIPEARCFYGFQIAIENIHSEMYSLLIETYISDPKEK 176
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 36/46 (78%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
N + EPLL++ P RFVIFPIQY DIW MYKKA ASFWT EEV L K
Sbjct: 50 NPKLEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVSLHK 95
>gi|422933799|ref|YP_007003842.1| ribonucleotide reductase subunit 2 [Cyprinid herpesvirus 2]
gi|386686112|gb|AFJ20464.1| ribonucleotide reductase subunit 2 [Cyprinid herpesvirus 2]
Length = 337
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 111/216 (51%), Gaps = 60/216 (27%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE 146
V EPLL D I + ++DIW+MYKKA+ S WTAE EI K +
Sbjct: 13 VPYEPLLHDTSVSKYILQVTHKDIWEMYKKAQNSNWTAE------------EIDLAKDMD 60
Query: 147 EKASHSRNEPYLFRIKLA----PGGI-------------------CRY------------ 171
+ S++E + + LA GI C Y
Sbjct: 61 GWYALSKDEQHFLKYVLAFFAASDGIVNENLCERFTREVQYVEAKCFYGFQMAIENVHSE 120
Query: 172 -----------KVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVE 220
V + ++ G IE +P +K+KA WA++WI ++++FGER++AFA+VE
Sbjct: 121 VYAKLLMTYITDVAERDRLFGA--IEHIPSIKRKARWAMKWINSQSATFGERLVAFAAVE 178
Query: 221 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GIFFSGSFA+IFWLK++G MPGL FSNELISRDE L
Sbjct: 179 GIFFSGSFAAIFWLKQKGTMPGLYFSNELISRDEGL 214
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D+ W L++DE++F+ +VLAFFAASDGIVNENL ERFT+EVQ EA+CFYGF
Sbjct: 51 EEIDLAKDMDGWYALSKDEQHFLKYVLAFFAASDGIVNENLCERFTREVQYVEAKCFYGF 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+ENVHSE+Y+ L+ TYI D ER
Sbjct: 111 QMAIENVHSEVYAKLLMTYITDVAER 136
>gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 101/179 (56%), Gaps = 38/179 (21%)
Query: 113 MYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEK-ASH------------SRNEPYLF 159
MYKKAEASFWTAEE+DL++ + + AL E SH + N F
Sbjct: 1 MYKKAEASFWTAEEIDLAEDLK---DWDALTANERHFVSHILAFFAASDGIVNENLTGNF 57
Query: 160 RIKL-APGGICRYKVKKGGKITGGKT---------------------IETMPCVKKKADW 197
++ +P C Y + + +T IET+PCV+KKA W
Sbjct: 58 STEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHW 117
Query: 198 ALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
AL+W +SF ER+IAFA+VEGIFFSGSF +IFWLKKRGLMPGL FSNELISRDE L
Sbjct: 118 ALKWCDAGNASFAERMIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGL 176
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I EDL W+ LT +E++F+SH+LAFFAASDGIVNENL F+ EV EARCFYGF
Sbjct: 13 EEIDLAEDLKDWDALTANERHFVSHILAFFAASDGIVNENLTGNFSTEVTSPEARCFYGF 72
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLIDTYIKD E+
Sbjct: 73 QIAVENIHSETYSLLIDTYIKDSTEK 98
>gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax
Sal-1]
gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative
[Plasmodium vivax]
Length = 349
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 104/206 (50%), Gaps = 45/206 (21%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
E +L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 30 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIK 89
Query: 132 -----------VVVTNFE---IRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N +R +K E K + Y F+I + Y +
Sbjct: 90 HVLAFFAASDGIVLENLASKFLRQVKITEAK------KFYAFQIAVENIHSETYSLLIDN 143
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I K IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF +
Sbjct: 144 YIKDEKERMNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFCA 202
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFW KK+ + GLTFSNELISRDE L
Sbjct: 203 IFWFKKQNKLHGLTFSNELISRDEGL 228
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F ++V+ITEA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIKDEKER 151
>gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 104/206 (50%), Gaps = 45/206 (21%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
E +L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 29 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIK 88
Query: 132 -----------VVVTNFE---IRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGG 177
+V+ N +R +K E K + Y F+I + Y +
Sbjct: 89 HVLAFFAASDGIVLENLASKFLRQVKITEAK------KFYAFQIAVENIHSETYSLLIDN 142
Query: 178 KITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I K IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF +
Sbjct: 143 YIKDEKERMNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFCA 201
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFW KK+ + GLTFSNELISRDE L
Sbjct: 202 IFWFKKQNKLHGLTFSNELISRDEGL 227
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F ++V+ITEA+ FY F
Sbjct: 65 EEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAF 124
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 125 QIAVENIHSETYSLLIDNYIKDEKER 150
>gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
exigua MNPV]
gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
exigua MNPV]
Length = 313
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 40/198 (20%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------------------- 131
R V+FPIQ+ D+W YK+A W EEVDLSK
Sbjct: 5 RKVLFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDFTQKLTDNERNFIEKILAFFAAA 64
Query: 132 ---VVVTNFEIRALKTGEEKASHSRNEPYLFRI------KLAPGGICRYKVKKGGKITGG 182
V + E E +A + N+ L + L + + + K+ + G
Sbjct: 65 DSIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLNG- 123
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
E MPCV++KA+WA+++I DE + ER++AFA VEG+FFSGSFA+IF++K +G+MPG
Sbjct: 124 --FENMPCVRRKAEWAMKYIDDEKITLAERLVAFAIVEGVFFSGSFAAIFYMKTKGVMPG 181
Query: 243 LTFSNELISRDEDLSHWN 260
LTFSNELISRDE L H N
Sbjct: 182 LTFSNELISRDEGL-HTN 198
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+S+D D KLT +E+ FI +LAFFAA+D IVN N++E + V EA+ FY Q+
Sbjct: 35 LSKDYD-DFTQKLTDNERNFIEKILAFFAAADSIVNINIIEHMQRTVPELEAQYFYNQQV 93
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
++ +H+EMY+LLI IKD++++
Sbjct: 94 LIQCIHTEMYNLLIHALIKDEKKQ 117
>gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
Length = 349
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 104/207 (50%), Gaps = 47/207 (22%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
E +L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 30 NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIK 89
Query: 132 -----------VVVTNFE---IRALKTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N +R ++ E K +S +E Y I
Sbjct: 90 HVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLID------- 142
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
Y + ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF
Sbjct: 143 NYIKDEKERLNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFC 201
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFW KK+ + GLTFSNELISRDE L
Sbjct: 202 AIFWFKKQNKLHGLTFSNELISRDEGL 228
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F +EVQITEA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIKDEKER 151
>gi|1710398|sp|P50650.1|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase R2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
Length = 349
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 104/207 (50%), Gaps = 47/207 (22%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
E +L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 30 NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIK 89
Query: 132 -----------VVVTNFE---IRALKTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N +R ++ E K +S +E Y I
Sbjct: 90 HVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLID------- 142
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
Y + ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF
Sbjct: 143 NYIKDEKERLNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFC 201
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFW KK+ + GLTFSNELISRDE L
Sbjct: 202 AIFWFKKQNKLHGLTFSNELISRDEGL 228
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F +EVQITEA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIKDEKER 151
>gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain
H]
gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium
knowlesi strain H]
Length = 349
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 104/207 (50%), Gaps = 47/207 (22%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
E +L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 30 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIK 89
Query: 132 -----------VVVTNFE---IRALKTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N +R ++ E K +S +E Y I
Sbjct: 90 HVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIHSETYSLLID------- 142
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
Y + ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF
Sbjct: 143 NYIKDEKERMNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFC 201
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFW KK+ + GLTFSNELISRDE L
Sbjct: 202 AIFWFKKQNKLHGLTFSNELISRDEGL 228
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F ++VQITEA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIKDEKER 151
>gi|356506867|ref|XP_003522196.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase small chain-like [Glycine max]
Length = 258
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 106/217 (48%), Gaps = 47/217 (21%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---- 131
LKQ++ + EPLL NP RF +FPIQ+ IW+MYKK +A+FW EEVDLS+
Sbjct: 3 LKQLTKLRLPKITEEPLLAPNPDRFCMFPIQFLQIWEMYKKVKAAFWIMEEVDLSQDLCH 62
Query: 132 ------------------------VVVTNF-----------EIRALKTGEEKASHSRNEP 156
+V+ N E RA + + +E
Sbjct: 63 WATLSDGERPFITHVLAFFTASDGIVLENLAGRFTKEIQLPEARAFYGFQITIKNIHSEM 122
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
Y L +Y K + I T+PC+ KKA WALRWI D + SF E ++AF
Sbjct: 123 Y----NLLLETYIKYSTKNNRLF---RAINTIPCIIKKAQWALRWI-DASESFVECLMAF 174
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
A V+ GSF FWLKKRGLM GLTFSN+LI RD
Sbjct: 175 ACVKEXILLGSFCVTFWLKKRGLMSGLTFSNKLILRD 211
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 64/81 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW L+ E+ FI+HVLAFF ASDGIV ENL RFT+E+Q+ EAR FYGF
Sbjct: 52 EEVDLSQDLCHWATLSDGERPFITHVLAFFTASDGIVLENLAGRFTKEIQLPEARAFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIK 328
QI ++N+HSEMY+LL++TYIK
Sbjct: 112 QITIKNIHSEMYNLLLETYIK 132
>gi|389585905|dbj|GAB68635.1| ribonucleoside-diphosphate reductase small chain [Plasmodium
cynomolgi strain B]
Length = 355
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 104/207 (50%), Gaps = 47/207 (22%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
E +L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 36 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIK 95
Query: 132 -----------VVVTNFE---IRALKTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N +R ++ E K +S +E Y I
Sbjct: 96 HVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIHSETYSLLID------- 148
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
Y + ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF
Sbjct: 149 NYIKDEKERMNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFC 207
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFW KK+ + GLTFSNELISRDE L
Sbjct: 208 AIFWFKKQNKLHGLTFSNELISRDEGL 234
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F ++VQITEA+ FY F
Sbjct: 72 EEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSF 131
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 132 QIAVENIHSETYSLLIDNYIKDEKER 157
>gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit
[Cryptosporidium muris RN66]
gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Cryptosporidium muris RN66]
Length = 346
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 109/216 (50%), Gaps = 39/216 (18%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---- 131
+ Q ++ EP+L + R I + + +W MYKK EASFWTAEE+DL +
Sbjct: 14 IDQAVEKIKAMQHEEPVLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRD 73
Query: 132 ------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG 167
+V+ N + LK E + +R Y F+I +
Sbjct: 74 WESLKEPEKHFIKYVLAFFAASDGIVMENLAVNFLK--EIQIEEARM-YYGFQIAMEQIH 130
Query: 168 ICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVE 220
Y + I+ K I +P VK KA WA +W+ + SF ER+I F +VE
Sbjct: 131 SETYSLLIDQYISDVKDRQMLFEAISHLPAVKTKAKWATKWMNNN-RSFAERIIGFCAVE 189
Query: 221 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GI FSGSF +IFWLKKRGLMPGLTFSNELISRDE +
Sbjct: 190 GILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGI 225
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 63/88 (71%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E I +D+ W L EK+FI +VLAFFAASDGIV ENL F +E+QI EAR +Y
Sbjct: 61 TAEEIDLGQDMRDWESLKEPEKHFIKYVLAFFAASDGIVMENLAVNFLKEIQIEEARMYY 120
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAME +HSE YSLLID YI D ++R
Sbjct: 121 GFQIAMEQIHSETYSLLIDQYISDVKDR 148
>gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
chabaudi]
gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 349
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 81 APVQENVET-EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+ +Q+N E E +L RF + PI Y ++W YKKAEASFWTAEE+DLS
Sbjct: 21 SDLQKNKECNEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKL 80
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVK 174
K V+ F E AS E Y F+I + Y +
Sbjct: 81 NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIHSETYSLL 140
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I K IE +P +K KA WA +WI D +SF ER++A A VEGI FSGS
Sbjct: 141 IDNYIRDEKERLNLFHAIENIPAIKNKALWAAKWIND-TNSFAERIVANACVEGILFSGS 199
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +IFW KK+ + GLTFSNELISRDE L
Sbjct: 200 FCAIFWFKKQNKLHGLTFSNELISRDEGL 228
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F +EVQI EA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YI+D++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIRDEKER 151
>gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum]
Length = 320
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 103/204 (50%), Gaps = 47/204 (23%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------------- 131
+L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 4 ILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIKHVL 63
Query: 132 --------VVVTNFE---IRALKTGEEKASHS--------RNEPYLFRIKLAPGGICRYK 172
+V+ N +R ++ E K +S +E Y I Y
Sbjct: 64 AFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLID-------NYI 116
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF +IF
Sbjct: 117 KDEKERLNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFCAIF 175
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W KK+ + GLTFSNELISRDE L
Sbjct: 176 WFKKQNKLHGLTFSNELISRDEGL 199
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F +EVQITEA+ FY F
Sbjct: 37 EEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 97 QIAVENIHSETYSLLIDNYIKDEKER 122
>gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus]
Length = 192
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+P VK+KADWAL+WI+D S+F ER++AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 20 AIETLPYVKRKADWALQWISDTNSTFAERLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 79
Query: 244 TFSNELISRDEDLSHWN 260
T+SNELISRDE L H N
Sbjct: 80 TYSNELISRDEGL-HCN 95
>gi|397638244|gb|EJK72985.1| hypothetical protein THAOC_05425, partial [Thalassiosira oceanica]
Length = 235
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
I EDL W+ LT +E++F+SH+LAFFAASDGIVNENL F EVQ EARCFYGFQI
Sbjct: 1 IDLAEDLKDWDGLTNNERHFVSHILAFFAASDGIVNENLCGNFATEVQSAEARCFYGFQI 60
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
A+EN+HSE YSLLIDTYIKDQ ++
Sbjct: 61 AVENIHSETYSLLIDTYIKDQADK 84
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 66/86 (76%)
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y + K+ IET+PCV+KKA+WAL+W +SF ER IAFA+VEGIFFSGSF +
Sbjct: 77 YIKDQADKMHLLNAIETVPCVQKKANWALKWCDSRHASFAERCIAFAAVEGIFFSGSFCA 136
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGL FSNELISRDE L
Sbjct: 137 IFWLKKRGLMPGLCFSNELISRDEGL 162
>gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 213
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL HW LT DEK+FISHVLAFFAASDGIV EN+ RF +EVQ++EAR FYGFQIA+EN+
Sbjct: 1 DLGHWENLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENI 60
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++TYIKD E+
Sbjct: 61 HSEMYSLLLETYIKDSTEK 79
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA+WALRWI D SF ER+IAFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 85 AIETVPCVAKKAEWALRWI-DGGESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGL 143
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 144 TFSNELISRDEGL 156
>gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 213
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL HW LT DEK+FISHVLAFFAASDGIV EN+ RF +EVQ++EAR FYGFQIA+EN+
Sbjct: 1 DLGHWENLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENI 60
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++TYIKD E+
Sbjct: 61 HSEMYSLLLETYIKDSTEK 79
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA+WALRWI D SF ER+IAFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 85 AIETVPCVAKKAEWALRWI-DGGESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGL 143
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 144 TFSNELISRDEGL 156
>gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 296
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 98/177 (55%), Gaps = 34/177 (19%)
Query: 113 MYKKAEASFWTAEEVD------------------LSKVV--------VTNFEIRALKTGE 146
MYKKAEASFWTAEE+D +S V+ + N + E
Sbjct: 1 MYKKAEASFWTAEEIDLAGDLQDWDKLSSNERHFVSHVLAFFAASDGIVNENLAGNFATE 60
Query: 147 EKASHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWAL 199
+++ +R Y F+I + I Y K IET+PCV+KKA WAL
Sbjct: 61 IQSAEARC-FYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASWAL 119
Query: 200 RWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+W +SF ER +AFA+VEGIFFSGSF +IFWLKKRGLMPGL FSNELISRDE L
Sbjct: 120 QWCDANHASFAERCVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGL 176
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 66/79 (83%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL W+KL+ +E++F+SHVLAFFAASDGIVNENL F E+Q EARCFYGFQIA+EN+
Sbjct: 20 DLQDWDKLSSNERHFVSHVLAFFAASDGIVNENLAGNFATEIQSAEARCFYGFQIAVENI 79
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE YSLLIDTY++D E+
Sbjct: 80 HSETYSLLIDTYVRDAAEK 98
>gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus
granularis]
Length = 141
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 65/73 (89%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ETMPCV KKA WAL WI+ +++ FG R++AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 68 AVETMPCVTKKAQWALDWISSDSADFGTRIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 127
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 128 TFSNELISRDEGL 140
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/62 (87%), Positives = 58/62 (93%)
Query: 272 HVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQE 331
HVLAFFAASDGIVNENLVERF+QEVQI EARCFYGFQIA+EN+HSEMYSLLID YIKD
Sbjct: 1 HVLAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAV 60
Query: 332 ER 333
+R
Sbjct: 61 QR 62
>gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
echinatior]
Length = 210
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 67/73 (91%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV+KKA+WAL WI E+++F ERV+AFA+VEGIFFSGSFA+IFWLKKRG+MPGL
Sbjct: 13 AIETLPCVRKKANWALNWINHESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRGVMPGL 72
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 73 TFSNELISRDEGL 85
>gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit
[Cafeteria roenbergensis virus BV-PW1]
gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit
[Cafeteria roenbergensis virus BV-PW1]
Length = 326
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 103/203 (50%), Gaps = 39/203 (19%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE-- 146
E LL+ R+ +FPI+Y IW +YKK EA+FWTAEE+D SK + + L E
Sbjct: 7 NEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSK---DKHDFKKLNQDEQR 63
Query: 147 ---------------------EKASHSRNE-----PYLFRIKLAPGGICRYKVKKGGKIT 180
E+ SH Y F++ + Y ++ I
Sbjct: 64 FIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQIDNIIE 123
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ +IET+PC+K K DW L+W+ E SF R++A EG+FFSGSF +IFW
Sbjct: 124 DVQERKDILNSIETVPCIKAKTDWMLKWVKSE-ESFATRMVAQVISEGLFFSGSFCAIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LK + +MPGL SNELI+RDE +
Sbjct: 183 LKNKNIMPGLISSNELIARDEGM 205
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 62/94 (65%)
Query: 240 MPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQIT 299
M ++ E I +D + KL +DE+ FI +VLAFF+ASD IVN NL ER + EVQ
Sbjct: 35 MEAAFWTAEEIDWSKDKHDFKKLNQDEQRFIKYVLAFFSASDTIVNINLGERLSHEVQPL 94
Query: 300 EARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
EA+ Y FQ+ ME +HSE+Y+L ID I+D +ER
Sbjct: 95 EAKIAYTFQMMMEGIHSEVYALQIDNIIEDVQER 128
>gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
tauri]
gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
tauri]
Length = 241
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 66/74 (89%), Gaps = 1/74 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+PCVKKKADWAL+WI D + SF ER++AFA +EGIFFSGSF SI+WLKKRGLMPG
Sbjct: 45 RAIETIPCVKKKADWALKWI-DSSDSFAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPG 103
Query: 243 LTFSNELISRDEDL 256
LTFSNELISRDE L
Sbjct: 104 LTFSNELISRDEGL 117
>gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii
17XNL]
gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii]
Length = 349
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 100/200 (50%), Gaps = 33/200 (16%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------K 131
E +L RF + PI Y ++W YKKAEASFWTAEE+DLS K
Sbjct: 30 NEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIK 89
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGGICRYKVKKGGKITGGK 183
V+ F E AS E Y F+I + Y + I K
Sbjct: 90 HVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEK 149
Query: 184 -------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
IE +P +K KA WA +WI D +SF ER++A A VEGI FSGSF +IFW KK
Sbjct: 150 ERLNLFHAIENIPAIKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFCAIFWFKK 208
Query: 237 RGLMPGLTFSNELISRDEDL 256
+ + GLTFSNELISRDE L
Sbjct: 209 QNKLHGLTFSNELISRDEGL 228
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F +EV+I EA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIKDEKER 151
>gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 213
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 67/79 (84%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL HW LT DEK+FISHVLAFF ASDGIV EN+ RF +EVQ++EAR FYGFQIA+EN+
Sbjct: 1 DLGHWENLTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENI 60
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++TYIKD E+
Sbjct: 61 HSEMYSLLLETYIKDSTEK 79
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA+WALRWI D SF ER+IAFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 85 AIETVPCVAKKAEWALRWI-DGGESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGL 143
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 144 TFSNELISRDEGL 156
>gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 96/176 (54%), Gaps = 33/176 (18%)
Query: 113 MYKKAEASFWTAEEVDLSKVV-----VTNFEIR---------------ALKTGEEKASHS 152
MYKKAEASFWTAEEVDLS V ++N E L+ + H
Sbjct: 1 MYKKAEASFWTAEEVDLSHDVQQWESLSNSEKHFISHVLAFFAASDGIVLENLAARFLHD 60
Query: 153 RNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALR 200
P Y F+I + Y + I K IE++ CV KA WAL
Sbjct: 61 IQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKWALD 120
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WI ++ F ER+IAFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 121 WI-QSSTLFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 175
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 69/89 (77%)
Query: 245 FSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
++ E + D+ W L+ EK+FISHVLAFFAASDGIV ENL RF ++QI EAR F
Sbjct: 10 WTAEEVDLSHDVQQWESLSNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAF 69
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQIAMEN+HSEMYSLL++TYIKD +E+
Sbjct: 70 YGFQIAMENIHSEMYSLLLETYIKDSKEK 98
>gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein
[Mamestra configurata NPV-A]
Length = 313
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 33/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------VVVTN------FEIRALKTGE 146
R ++PI ++D+++ YK+AEA FW EEVDLSK + + N + +
Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLKLNNDQRHFIMHVLGFFSAA 64
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKG-----GKITGGKTIETMP------------ 189
+ + Y+ + + Y + ++ G IE +P
Sbjct: 65 DSIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILNAF 124
Query: 190 ----CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
CV+KK DWAL+WI ++ ++F ER++AFA VEG+FFSGSFA+IF++K G+MPGLTF
Sbjct: 125 DNVPCVRKKDDWALKWIENDKATFAERLVAFAIVEGVFFSGSFAAIFYIKTLGIMPGLTF 184
Query: 246 SNELISRDEDL 256
SNELISRDE +
Sbjct: 185 SNELISRDEGM 195
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+S+D D KL D+++FI HVL FF+A+D IVN N++ Q V EA FY FQ
Sbjct: 35 LSKDYD-DFQLKLNNDQRHFIMHVLGFFSAADSIVNINVLNYMLQTVPELEAVYFYTFQA 93
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMENVH++MY LI I D++ +
Sbjct: 94 AMENVHTQMYGTLIIELIPDKKHQ 117
>gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
Length = 412
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN K++ E+YFIS VLAFFAASDGIVNENLVE F+ EVQI EA+CFYG
Sbjct: 124 EEIDLSKDLDDWNNKMSEGERYFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYG 183
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSE YSLLIDTY +D EE
Sbjct: 184 FQIMMENIHSETYSLLIDTYSRDTEE 209
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 64/73 (87%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P +K+KA+WA+RWI D+ + + ER++AFA+VEG+FFSGSFA+IFWLKK+GLMPGL
Sbjct: 216 AIENIPPIKEKAEWAIRWIQDDTALYAERLVAFAAVEGVFFSGSFAAIFWLKKKGLMPGL 275
Query: 244 TFSNELISRDEDL 256
TFSNELI RDE L
Sbjct: 276 TFSNELICRDEGL 288
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 42/49 (85%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
++E + EPLL +N RRFV+FPI+Y +IW+ YK+AEASFWTAEE+DLSK
Sbjct: 82 LKEMEKDEPLLVENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSK 130
>gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii ME49]
gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii ME49]
gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii VEG]
Length = 391
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 105/205 (51%), Gaps = 47/205 (22%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------- 131
PLL NP R+VI PIQ+ IW+MYKK EASFWTAEE+DL++
Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWETLGENEKHFIKYV 133
Query: 132 ---------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+V+ N E RA + + +E Y I +Y
Sbjct: 134 LAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLID-------QY 186
Query: 172 KVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
+ K+ + + V KA WA WI + + F ER++ FA VEGI FSGSF +I
Sbjct: 187 IRDEEEKLQLFDAVHNVKAVAVKAAWAAMWINNR-NCFAERLVGFACVEGILFSGSFCAI 245
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 246 FWLKKRGLMPGLTFSNELISRDEGL 270
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 70/88 (79%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E I +D++HW L +EK+FI +VLAFFAASDGIV ENL E+F E+Q+ EAR FY
Sbjct: 106 TAEEIDLAQDMTHWETLGENEKHFIKYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFY 165
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSE YSLLID YI+D+EE+
Sbjct: 166 GFQIAMENIHSETYSLLIDQYIRDEEEK 193
>gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii GT1]
Length = 391
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 105/205 (51%), Gaps = 47/205 (22%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------- 131
PLL NP R+VI PIQ+ IW+MYKK EASFWTAEE+DL++
Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWETLGENEKHFIKYV 133
Query: 132 ---------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+V+ N E RA + + +E Y I +Y
Sbjct: 134 LAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLID-------QY 186
Query: 172 KVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
+ K+ + + V KA WA WI + + F ER++ FA VEGI FSGSF +I
Sbjct: 187 IRDEEEKLQLFDAVHNVKAVAVKAAWAAMWINNR-NCFAERLVGFACVEGILFSGSFCAI 245
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 246 FWLKKRGLMPGLTFSNELISRDEGL 270
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 70/88 (79%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E I +D++HW L +EK+FI +VLAFFAASDGIV ENL E+F E+Q+ EAR FY
Sbjct: 106 TAEEIDLAQDMTHWETLGENEKHFIKYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFY 165
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSE YSLLID YI+D+EE+
Sbjct: 166 GFQIAMENIHSETYSLLIDQYIRDEEEK 193
>gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
virus NY2A]
gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
virus NY2A]
Length = 324
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 104/205 (50%), Gaps = 39/205 (19%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV-------------- 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ V
Sbjct: 5 EPILSDNGSRKFSAFPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWREKLNNDERHFI 64
Query: 135 -------------------TNF--EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKV 173
TNF E+ A + + A + NE ++ I
Sbjct: 65 KHILGFFAGSDGIVMENLQTNFGVEVMAPEARQFYAYQTFNESV--HSEMYALLIDALIS 122
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ ++ IET+P V KA WA +W+ E SF ER++A+ VEGI FSGSF ++FW
Sbjct: 123 DEQERLDLFDAIETIPAVHNKAKWAQKWLKPE-RSFAERLVAWICVEGILFSGSFCALFW 181
Query: 234 LKKRGLMPGLTFSNELISRDEDLSH 258
L+ +G+MPGL SNE ISRDE L
Sbjct: 182 LRNKGVMPGLCLSNEFISRDEGLHQ 206
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D++ W KL DE++FI H+L FFA SDGIV ENL F EV EAR F
Sbjct: 39 TTEEVPLNADVADWREKLNNDERHFIKHILGFFAGSDGIVMENLQTNFGVEVMAPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E+VHSEMY+LLID I D++ER
Sbjct: 99 YAYQTFNESVHSEMYALLIDALISDEQER 127
>gi|432884081|ref|XP_004074433.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Oryzias latipes]
Length = 279
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW++L DEK+FIS+VLAFFAASDGIVNENLV+RF+ EVQ+ EAR FY F
Sbjct: 70 EEVDLSKDLVHWDRLKPDEKHFISNVLAFFAASDGIVNENLVQRFSLEVQVPEARSFYSF 129
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +E VHSEMYSLLI+TYI+D +ER
Sbjct: 130 QILIETVHSEMYSLLINTYIRDLKER 155
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 44/54 (81%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
P E EPLLR+NPRRFVIFPIQY DIWKMYK+A+ASFWT EEVDLSK +V
Sbjct: 26 CPNGSETEDEPLLRENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLV 79
>gi|429962574|gb|ELA42118.1| ribonucleoside-diphosphate reductase small chain, partial
[Vittaforma corneae ATCC 50505]
Length = 282
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL +++LT+DE++FI +VLAFFAASDGIVNENLVERF+ E+ EA+CFYGFQIAMEN+
Sbjct: 6 DLEDFDRLTKDEQHFIKYVLAFFAASDGIVNENLVERFSSEITNLEAKCFYGFQIAMENI 65
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+TYI+D++E+
Sbjct: 66 HSEMYSKLIETYIRDEDEK 84
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+I+T+P + +KA WA +WI + + F R+IAFA VEGIFFSG FA+IFW+KKRGLMPGL
Sbjct: 90 SIKTIPSIARKAAWAKKWI-ESTTDFDTRMIAFACVEGIFFSGCFAAIFWIKKRGLMPGL 148
Query: 244 TFSNELISRDE 254
TFSNELISRDE
Sbjct: 149 TFSNELISRDE 159
>gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
5a2]
Length = 355
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 65/73 (89%), Gaps = 2/73 (2%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I+T+ CVKKKADWALRWI E +SF ER++AFA+VEGIFFSGSF SIFWLKKRGLMPGL
Sbjct: 160 AIDTLDCVKKKADWALRWI--EQASFAERLVAFAAVEGIFFSGSFCSIFWLKKRGLMPGL 217
Query: 244 TFSNELISRDEDL 256
+FSNELISRDE L
Sbjct: 218 SFSNELISRDEGL 230
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W L E++FISHVLAFFAASDGIVNENL E F EVQ TEA+ FYGF
Sbjct: 69 EEIDLGQDLKDWANLNDGERHFISHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGF 128
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLIDTYIKD +ER
Sbjct: 129 QIAVENIHSETYSLLIDTYIKDPQER 154
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 37/42 (88%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EP+L++N RFV+FPI++ DIW+ YKKAEASFWTAEE+DL +
Sbjct: 34 EPILQENKNRFVLFPIEHHDIWEFYKKAEASFWTAEEIDLGQ 75
>gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus]
Length = 374
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W K+T +E++FIS VLAFFAASDGIVNENLVERF++EVQ+ EAR FYG
Sbjct: 85 EEVDLAKDMADWEKMTDNERFFISRVLAFFAASDGIVNENLVERFSKEVQVPEARFFYGS 144
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYS LI+TYI+D++ER
Sbjct: 145 QIAIENIHSEMYSKLIETYIRDEKER 170
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
E EPLLR+NP RFVIFP++Y DIW YKKA ASFWT EEVDL+K
Sbjct: 48 EEEPLLRENPNRFVIFPLKYHDIWAFYKKAVASFWTVEEVDLAK 91
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 188 MPCVKKKADWALRW-IADEASSFGERVIAFASVEGIFFS-GSFASIF-WLKKRGLMPGLT 244
+PC+ KKA+WA++ + + F ERVIAFA+V G FS G A F LKK+G G +
Sbjct: 180 VPCIAKKAEWAVKMGLQTITAPFAERVIAFAAVGGNIFSLGPVAIPFSGLKKKGDWRGWS 239
Query: 245 FS--NELISRDED---LSHW-------NKLTRDEKYFI 270
S LI DE +SH NKL+++ Y+I
Sbjct: 240 HSILRSLIQGDEGVHAISHVCCIQHIKNKLSQERIYYI 277
>gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AIETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AIETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EV ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVHVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AIETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AIETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
RF +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AIETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|401410906|ref|XP_003884901.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool]
gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool]
Length = 392
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D++HW L +EK+FI +VLAFFAASDGIV ENL E+F E+QI EAR FYGF
Sbjct: 109 EEIDLAQDMTHWESLNSNEKHFIKYVLAFFAASDGIVLENLAEKFLSEIQIPEARAFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLID YI+D++E+
Sbjct: 169 QIAMENIHSETYSLLIDQYIRDEKEK 194
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WI + + F ER++ FA VEGI FSGSF SIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 217 WINNR-NCFAERLVGFACVEGILFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGL 271
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
K +S ++E EPLL NPRR+VI PIQ+ IW+MYKK EASFWTAEE+DL++
Sbjct: 61 KLLSQQMKEKESEEPLLIANPRRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQ 115
>gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis]
Length = 289
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W LT++EK+FISHVLAFFAASDGIV ENL RF ++VQI EAR FYGF
Sbjct: 2 EEVDLSQDLYQWVNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAFYGF 61
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYSLL++TYI+D +E+
Sbjct: 62 QIAIENIHSEMYSLLLETYIRDSKEK 87
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I T+PCV +KA+WA+RWI + SF ER+++FA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 93 AINTIPCVARKAEWAMRWI-QSSGSFAERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGL 151
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 152 TFSNELISRDEGL 164
>gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|401840133|gb|EJT43042.1| RNR4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 345
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 112/210 (53%), Gaps = 31/210 (14%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--- 131
T +Q ++E+ + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE++L+K
Sbjct: 10 TFEQERHDMKESEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTE 69
Query: 132 ----------VVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGIC 169
+ N ++ + E S P Y F+I +
Sbjct: 70 DFQTLTEDQKAYIGNLLALSISSDNIVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYAE 129
Query: 170 RYKV------KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + K+ I K I T+P VK KA + +WI ++ S + ER++AFA+ EGIF
Sbjct: 130 VYSMMVDAFFKEPTNIPLFKEIATLPEVKNKAAFIEKWITNDDSLYAERLVAFAAKEGIF 189
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRD 253
+G++AS+FWL + ++PGLT +N I RD
Sbjct: 190 QAGNYASVFWLTNKNILPGLTMANRNICRD 219
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + LT D+K +I ++LA +SD IVN+ L+E F+ ++Q E + FYGF
Sbjct: 60 EEIELAKDTEDFQTLTEDQKAYIGNLLALSISSDNIVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN+++E+YS+++D + K+
Sbjct: 120 QIMMENIYAEVYSMMVDAFFKE 141
>gi|358054708|dbj|GAA99634.1| hypothetical protein E5Q_06335 [Mixia osmundae IAM 14324]
Length = 549
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 68/79 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D + + LT E++FI HVLAFFAASDGIVNENLVERF+ EV++TEA+CFYGFQI MEN+
Sbjct: 268 DRADFESLTPGERHFILHVLAFFAASDGIVNENLVERFSSEVKVTEAKCFYGFQIMMENI 327
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE+YSLLI+ Y++D+ ER
Sbjct: 328 HSEVYSLLIEFYVRDKRER 346
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 35/41 (85%)
Query: 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F G FFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 370 FCGCRGHFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 410
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 53 LKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ D L S P+ L + +E EPLL++ RFV+FPI+Y +IW+
Sbjct: 189 IDDFAAPLLTRDASVDPMPPSGPLTEAEKRAKELERQEPLLQELDNRFVLFPIKYDEIWR 248
Query: 113 MYKKAEASFWTAEEVDLS 130
YK+A ASFWTAEE+DL+
Sbjct: 249 FYKRAVASFWTAEEIDLT 266
>gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
RF +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
RF +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA++N+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEK 45
>gi|380863082|gb|AFF18834.1| ribonucleotide reductase small subunit, partial [Dimocarpus longan]
Length = 180
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ W +L+ EK+FI+HVLAFFAASDGIV ENL RF ++QI EAR FYGF
Sbjct: 53 EEVDLSQDVQQWERLSDSEKHFITHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGF 112
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLL++TYIKD +E+
Sbjct: 113 QIAMENIHSEMYSLLLETYIKDSKEK 138
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 39/174 (22%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
++E VE EP+L + +RF +FPI+Y+ +W+MYKKA+ASFWTAEEVDLS+
Sbjct: 11 LEEGVEEEPILMEQNQRFCMFPIRYKQLWEMYKKAQASFWTAEEVDLSQDVQQWERLSDS 70
Query: 132 -----------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R L + + + Y F+I + Y +
Sbjct: 71 EKHFITHVLAFFAASDGIVLENLAARFLNDIQIPEARAF---YGFQIAMENIHSEMYSLL 127
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEG 221
I K IE++PCV KA WAL WI ++SF ER++AFA VEG
Sbjct: 128 LETYIKDSKEKHRLFNAIESIPCVASKAKWALEWI-HSSTSFAERLVAFACVEG 180
>gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body
iridovirus]
Length = 312
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 96/191 (50%), Gaps = 34/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEIRALK--------- 143
R+V+ P +W MYKKA ASFWT EEVDLS V +T E R +
Sbjct: 3 RYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMA 61
Query: 144 ---TGEEKASHSRNEP---------YLFRIKLAPGGICRYK------VKKGGKITGGKTI 185
G+ + E Y FR+ + Y V K +
Sbjct: 62 DGIVGDNLVCNFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALFSAA 121
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
E MPCVK KA WA +W+ R++AFA+VEG+ FSGSFA+IFWLKKR LMPGL F
Sbjct: 122 EDMPCVKAKAQWAAQWLNATHKPIATRLLAFAAVEGVMFSGSFAAIFWLKKRSLMPGLAF 181
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 182 SNELISRDEGL 192
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEV-QITEARCFY 305
E + D+ HW +KLT E+ F+SH+LAFFA +DGIV +NLV F +E+ I EAR FY
Sbjct: 28 EEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDHIPEARAFY 87
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
GF++AMEN+H+EMY+ LI T + + +
Sbjct: 88 GFRVAMENIHAEMYTQLIITLVAKENQ 114
>gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IET+PCV KKA WALRWI D + S ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AIETVPCVAKKAQWALRWI-DGSESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
FSNELISRDE L
Sbjct: 110 AFSNELISRDEGL 122
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|1710399|sp|P50649.1|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
AltName: Full=Ribonucleotide reductase R2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum]
Length = 322
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 101/204 (49%), Gaps = 47/204 (23%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------------- 131
+L RF ++PI Y D++ YKKAEA FWTAEE+D S
Sbjct: 4 ILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFEKLNENEKHFIKHVL 63
Query: 132 --------VVVTNFEI---RALKTGEEKASHS--------RNEPYLFRIKLAPGGICRYK 172
+V+ N + R ++ E K +S +E Y I Y
Sbjct: 64 AFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLID-------NYI 116
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF +IF
Sbjct: 117 KDEKERLNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFCAIF 175
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W KK+ + GLTFSNELISRDE L
Sbjct: 176 WFKKQNKLHGLTFSNELISRDEGL 199
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL F +EVQITEA+ FY F
Sbjct: 37 EEIDYSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 97 QIAVENIHSETYSLLIDNYIKDEKER 122
>gi|260909050|gb|ACX54162.1| RR2 protein, partial [White spot syndrome virus]
gi|260909052|gb|ACX54163.1| RR2 protein, partial [White spot syndrome virus]
gi|260909054|gb|ACX54164.1| RR2 protein, partial [White spot syndrome virus]
gi|260909056|gb|ACX54165.1| RR2 protein, partial [White spot syndrome virus]
Length = 349
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 42/220 (19%)
Query: 72 DKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
DK T K + +Q + L R+NP RFV PI ++D+W+MYKK A FWT EE+D +
Sbjct: 27 DKFTKKLI---MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFER 83
Query: 132 ----------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
+V+ N R + + + S + F++ +
Sbjct: 84 DPKDWEKLTQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSF---FDFQVGM 140
Query: 164 APGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
I R + K + P +KKK WA+ W+ + E ++AF
Sbjct: 141 ESIHGNVYGELIDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSN-NDLAELIVAF 199
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSG+FASIFW+K RG++PGLT SNE ISRDE L
Sbjct: 200 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGL 239
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I + D W KLT+DEK FI +LAFFA+SDGIV ENL R Q QI EAR F+ F
Sbjct: 77 EEIDFERDPKDWEKLTQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDF 136
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ ME++H +Y LID + D++++
Sbjct: 137 QVGMESIHGNVYGELIDRLVPDEKDK 162
>gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus]
gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
virus]
gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2)
[shrimp white spot syndrome virus]
gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus]
gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus]
gi|417072416|gb|AFX59565.1| wsv188 [White spot syndrome virus]
Length = 413
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 42/220 (19%)
Query: 72 DKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
DK T K + +Q + L R+NP RFV PI ++D+W+MYKK A FWT EE+D +
Sbjct: 42 DKFTKKLI---MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFER 98
Query: 132 ----------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
+V+ N R + + + S + F++ +
Sbjct: 99 DPKDWEKLTQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSF---FDFQVGM 155
Query: 164 APGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
I R + K + P +KKK WA+ W+ + E ++AF
Sbjct: 156 ESIHGNVYGELIDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSN-NDLAELIVAF 214
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSG+FASIFW+K RG++PGLT SNE ISRDE L
Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGL 254
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I + D W KLT+DEK FI +LAFFA+SDGIV ENL R Q QI EAR F+ F
Sbjct: 92 EEIDFERDPKDWEKLTQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDF 151
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ ME++H +Y LID + D++++
Sbjct: 152 QVGMESIHGNVYGELIDRLVPDEKDK 177
>gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen
and kidney necrosis virus]
gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen
and kidney necrosis virus]
Length = 312
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 92/180 (51%), Gaps = 33/180 (18%)
Query: 110 IWKMYKKAEASFWTAEEVDLSKVV------VTNFEIRALK------------TGEEKASH 151
+W MYKKA ASFWT EEVDLS V +T E R + G+ +
Sbjct: 13 LWAMYKKAVASFWTVEEVDLSTDVRHWTEKLTEAERRFMSHILAFFAMADGIVGDNLVCN 72
Query: 152 SRNEP---------YLFRIKLAPGGICRYK------VKKGGKITGGKTIETMPCVKKKAD 196
E Y F++ + Y V K + E MPCVK KA
Sbjct: 73 FAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKAQ 132
Query: 197 WALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WA +W+ S R++AFA+VEG+ FSGSFA+IFWLKKR LMPGL FSNELISRDE L
Sbjct: 133 WAAQWLNATHKSIATRLLAFAAVEGVMFSGSFAAIFWLKKRSLMPGLAFSNELISRDEGL 192
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQ-ITEARCFY 305
E + D+ HW KLT E+ F+SH+LAFFA +DGIV +NLV F +E+ I EAR FY
Sbjct: 28 EEVDLSTDVRHWTEKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDYIPEARAFY 87
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
GFQ+AMEN+H+EMY+ LI T + + +
Sbjct: 88 GFQVAMENIHAEMYTQLIITLVAKENQ 114
>gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
virus]
Length = 413
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 100/200 (50%), Gaps = 39/200 (19%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------------- 131
L R+NP RFV PI ++D+W+MYKK A FWT EE+D +
Sbjct: 59 LTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEKLTQDEKDFILQIL 118
Query: 132 --------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKKG 176
+V+ N R + + + S + F++ + I R +
Sbjct: 119 AFFASSDGIVIENLTTRLRQVAQIPEARSF---FDFQVGMESIHGNVYGELIDRLVPDEK 175
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K + P +KKK WA+ W+ + E ++AFA+VEGIFFSG+FASIFW+K
Sbjct: 176 DKAILFNAAQHFPAIKKKEQWAINWMQSN-NDLAELIVAFAAVEGIFFSGAFASIFWIKN 234
Query: 237 RGLMPGLTFSNELISRDEDL 256
RG++PGLT SNE ISRDE L
Sbjct: 235 RGILPGLTSSNEFISRDEGL 254
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I + D W KLT+DEK FI +LAFFA+SDGIV ENL R Q QI EAR F+ F
Sbjct: 92 EEIDFERDPKDWEKLTQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDF 151
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ ME++H +Y LID + D++++
Sbjct: 152 QVGMESIHGNVYGELIDRLVPDEKDK 177
>gi|56555145|gb|AAV98100.1| RR2 protein [White spot syndrome virus]
Length = 328
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 42/220 (19%)
Query: 72 DKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
DK T K + +Q + L R+NP RFV PI ++D+W+MYKK A FWT EE+D +
Sbjct: 18 DKFTKKLI---MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFER 74
Query: 132 ----------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKL 163
+V+ N R + + + S + F++ +
Sbjct: 75 DPKDWEKLTQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSF---FDFQVGM 131
Query: 164 APGG-------ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
I R + K + P +KKK WA+ W+ + E ++AF
Sbjct: 132 ESIHGNVYGELIDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSN-NDLAELIVAF 190
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A+VEGIFFSG+FASIFW+K RG++PGLT SNE ISRDE L
Sbjct: 191 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGL 230
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I + D W KLT+DEK FI +LAFFA+SDGIV ENL R Q QI EAR F+ F
Sbjct: 68 EEIDFERDPKDWEKLTQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDF 127
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ ME++H +Y LID + D++++
Sbjct: 128 QVGMESIHGNVYGELIDRLVPDEKDK 153
>gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi]
gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi]
Length = 288
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEK 267
S GE ++A + F F I+ K+ L T +S+D W L E+
Sbjct: 43 SNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKD--YRDWENLNDGER 100
Query: 268 YFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYI 327
+FIS VLAFFAASDGIVNENLV RF+QEVQ+ EAR FYGFQI +EN+HSEMYS +IDTYI
Sbjct: 101 HFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHSEMYSKMIDTYI 160
Query: 328 KDQEER 333
+DQ+++
Sbjct: 161 RDQKQK 166
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
T + + V+ E LL +NP RFVIFPI++ DIW YKKA ASFWT +EVDLSK
Sbjct: 31 TYETATTTVRYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSK 87
>gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula]
Length = 206
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 64/79 (81%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D+ HW L+ EK+FISHVLAFFA SDGIV ENL RF +VQI EAR FYGFQIA+EN+
Sbjct: 61 DVQHWATLSDSEKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAIENI 120
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYSLL++TYIKD E+
Sbjct: 121 HSEMYSLLLETYIKDSREK 139
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 39/190 (20%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------ 130
++E EP+L +RF +FP++Y+ +W+MYKKAEASFWTAEEVDLS
Sbjct: 12 IREEETEEPILMKQTQRFCMFPVRYKQLWEMYKKAEASFWTAEEVDLSYDVQHWATLSDS 71
Query: 131 ----------------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R L + + + Y F+I + Y +
Sbjct: 72 EKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAF---YGFQIAIENIHSEMYSLL 128
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I + IE +PCV +KA+WAL WI + ++SF ER++ FA VEGIFFS +
Sbjct: 129 LETYIKDSREKHKLFNAIENLPCVARKAEWALSWI-NSSTSFAERLVGFACVEGIFFSEA 187
Query: 228 FASIFWLKKR 237
F LK+R
Sbjct: 188 SVPYFGLKER 197
>gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + S ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + S ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + S ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRWI D + S ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWI-DGSESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+HSEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEK 45
>gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 277
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 4 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 63
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 64 HSEMYSKLIETLIRDKEEQ 82
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 88 AIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGL 146
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 147 TFSNELISRDEGL 159
>gi|27923845|sp|Q9QTF2.1|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus]
gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream
iridovirus]
Length = 312
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 96/191 (50%), Gaps = 34/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEIRALK--------- 143
R+V+ P +W MYKKA ASFWT EEVDLS V +T E R +
Sbjct: 3 RYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMA 61
Query: 144 ---TGEEKASHSRNEP---------YLFRIKLAPGGICRYK------VKKGGKITGGKTI 185
G+ + E Y F++ + Y V K +
Sbjct: 62 DGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAA 121
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
E MPCVK KA WA +W+ R++AFA+VEG+ FSGSFA+IFWLKKR LMPGL F
Sbjct: 122 EDMPCVKAKAQWAAQWLNATHKPIATRLLAFAAVEGVMFSGSFAAIFWLKKRSLMPGLAF 181
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 182 SNELISRDEGL 192
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEV-QITEARCFY 305
E + D+ HW +KLT E+ F+SH+LAFFA +DGIV +NLV F +E+ I EAR FY
Sbjct: 28 EEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDHIPEARAFY 87
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
GFQ+A+EN+H+EMY+ LI T + + +
Sbjct: 88 GFQVAIENIHAEMYTQLIITLVAKENQ 114
>gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus]
Length = 312
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 96/191 (50%), Gaps = 34/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEIRALK--------- 143
R+V+ P +W MYKKA ASFWT EEVDLS V +T E R +
Sbjct: 3 RYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMA 61
Query: 144 ---TGEEKASHSRNEP---------YLFRIKLAPGGICRYK------VKKGGKITGGKTI 185
G+ + E Y F++ + Y V K +
Sbjct: 62 DGIVGDNLVCNFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALFSAA 121
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
E MPCVK KA WA +W+ R++AFA+VEG+ FSGSFA+IFWLKKR LMPGL F
Sbjct: 122 EDMPCVKAKAQWAAQWLNATHKPIATRLLAFAAVEGVMFSGSFAAIFWLKKRSLMPGLAF 181
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 182 SNELISRDEGL 192
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEV-QITEARCFY 305
E + D+ HW +KLT E+ F+SH+LAFFA +DGIV +NLV F +E+ I EAR FY
Sbjct: 28 EEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDHIPEARAFY 87
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
GFQ+AM+N+H+EMY+ LI T + + +
Sbjct: 88 GFQVAMKNIHAEMYTQLIITLVAKENQ 114
>gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 290
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 17 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 76
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 77 HSEMYSKLIETLIRDKEEQ 95
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 101 AIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGL 159
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 160 TFSNELISRDEGL 172
>gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper
iridovirus]
Length = 312
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 96/191 (50%), Gaps = 34/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEIRALK--------- 143
R+V+ P +W MYKKA ASFWT EEVDLS V +T E R +
Sbjct: 3 RYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMA 61
Query: 144 ---TGEEKASHSRNEP---------YLFRIKLAPGGICRYK------VKKGGKITGGKTI 185
G+ + E Y F++ + Y V K +
Sbjct: 62 DGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAA 121
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
E MPCVK KA WA +W+ R++AFA+VEG+ FSGSFA+IFWLKKR LMPGL F
Sbjct: 122 EDMPCVKAKAQWAAQWLNATHKPIATRLLAFAAVEGVMFSGSFAAIFWLKKRSLMPGLAF 181
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 182 SNELISRDEGL 192
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEV-QITEARCFY 305
E + D+ HW +KLT E+ F+SH+LAFFA +DGIV +NLV F +E+ I EAR FY
Sbjct: 28 EEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDHIPEARAFY 87
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
GFQ+A+EN+H+EMY+ LI T + + +
Sbjct: 88 GFQVAIENIHAEMYTQLIITLVAKENQ 114
>gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group]
Length = 244
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ I+T+P V++KADWA+RWI D F ER++AFA VEGIFFSGSF +IFWLKKRGLMPG
Sbjct: 46 RAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 104
Query: 243 LTFSNELISRDEDL 256
LTFSNELISRDE L
Sbjct: 105 LTFSNELISRDEGL 118
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 35/39 (89%)
Query: 295 EVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+VQ+ EAR FYGFQIA+EN+HSEMYSLL++TYI+D E+
Sbjct: 3 DVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEK 41
>gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
+ET+PCV KKA WALRW+ D + S ER++AFA VEGIFFSGSF +IFWLKKRGLMPGL
Sbjct: 51 AMETVPCVAKKAQWALRWM-DGSESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGL 109
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 110 TFSNELISRDEGL 122
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 291 RFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
R +EVQ++EAR FYGFQIA+EN+ SEMYSLL++TYIKD EE+
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEK 45
>gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 183
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 127
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 128 HSEMYSKLIETLIRDKEEQ 146
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 36/169 (21%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFSTL 75
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKI 179
K V+ F E +E + K+ G I + K+
Sbjct: 76 TPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKL 135
Query: 180 TGG------------KTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
IE +P ++KKA WA +WIA + +SF R +A
Sbjct: 136 IETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASD-TSFDTRCVAL 183
>gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
albicans WO-1]
Length = 394
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 62/71 (87%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I+ +P ++KKADWA+RWI E + + ER++AFA+VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 198 AIDNIPFIRKKADWAIRWIQSEDALYAERLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGL 257
Query: 244 TFSNELISRDE 254
TFSNELI RDE
Sbjct: 258 TFSNELICRDE 268
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 73/111 (65%), Gaps = 14/111 (12%)
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASD 281
F+ S AS FW + E + +DL WN K+ +E++FIS VLAFFAASD
Sbjct: 94 FYKKSLAS-FW------------TAEELDLSKDLDDWNNKMNENERFFISRVLAFFAASD 140
Query: 282 GIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEE 332
GIVNENLVE F EVQI EA+ Y FQI MEN+HSE YSLLI+TY KD EE
Sbjct: 141 GIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLIETYFKDPEE 191
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLL + R I+PI+Y ++W+ YKK+ ASFWTAEE+DLSK
Sbjct: 70 NEPLLTPDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSK 112
>gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 196
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 69/79 (87%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIA+EN+
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENI 127
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSEMYS LI+T I+D+EE+
Sbjct: 128 HSEMYSKLIETLIRDKEEQ 146
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 35/161 (21%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS--------- 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFSTL 75
Query: 131 --------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPG---GICRYKVKKGGKI 179
K V+ F E +E + K+ G I + K+
Sbjct: 76 TPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKL 135
Query: 180 TGG------------KTIETMPCVKKKADWALRWIADEASS 208
IE +P ++KKA WA +WIA + SS
Sbjct: 136 IETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTSS 176
>gi|448930767|gb|AGE54331.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus IL-5-2s1]
Length = 324
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 103/206 (50%), Gaps = 41/206 (19%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV-------------- 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 5 EPILSDNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRDKLNDDERHFI 64
Query: 135 -------------------TNF--EIRALKTGEEKASHSRNEP-YLFRIKLAPGGICRYK 172
TNF E+ + + A + NE + + L + +
Sbjct: 65 KHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISNE 124
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
++ + I P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IF
Sbjct: 125 QERNELFDAIENI---PAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSH 258
WL+ +G+MPGL SNE ISRDE L
Sbjct: 181 WLRNKGVMPGLCLSNEFISRDEGLHQ 206
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W +KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 39 TTEEVPLNADVVDWRDKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I +++ER
Sbjct: 99 YAYQTFNESIHSEQYALLIDALISNEQER 127
>gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502]
gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis]
Length = 296
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 95/179 (53%), Gaps = 39/179 (21%)
Query: 113 MYKKAEASFWTAEEVDLSK----------------------------VVVTNFEIRALKT 144
MYKKAEASFW EE+DLS+ +V+ N + L+
Sbjct: 1 MYKKAEASFWVTEEIDLSQDTRDWESLKDPERHFIKYVLAFFAASDGIVMENLAVNFLR- 59
Query: 145 GEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADW 197
E + +R Y F++ + Y + IT K I + VKKKA+W
Sbjct: 60 -EIQIPEARMY-YAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEW 117
Query: 198 ALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
A +W+ E SF ER+I F +VEGI FSGSF +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 118 ATKWMNSE-RSFAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 175
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 60/87 (68%)
Query: 247 NELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D W L E++FI +VLAFFAASDGIV ENL F +E+QI EAR +Y
Sbjct: 12 TEEIDLSQDTRDWESLKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYA 71
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQ+++E +HSE YSLLID YI D +ER
Sbjct: 72 FQMSIEQIHSETYSLLIDRYITDIKER 98
>gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera
multiple nucleopolyhedrovirus]
gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera
multiple nucleopolyhedrovirus]
gi|390165255|gb|AFL64902.1| rr2b [Mamestra brassicae MNPV]
gi|401665659|gb|AFP95771.1| ribonucleotide reductase small subunit [Mamestra brassicae MNPV]
Length = 313
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 33/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------VVVTN------FEIRALKTGE 146
R ++PI ++D+++ YK+AEA FW EEVDLSK + + N + +
Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLKLNNDQRHFIMHVLGFFSAA 64
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKG-----GKITGGKTIETMP------------ 189
+ + Y+ + + Y + ++ G I +P
Sbjct: 65 DSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAF 124
Query: 190 ----CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
CV+KK DWAL+W ++ + ER++AFA VEG+FFSGSFA+IF++K G+MPGLTF
Sbjct: 125 DNIPCVRKKDDWALKWTKNKKLTLAERLVAFAIVEGVFFSGSFAAIFYIKTLGIMPGLTF 184
Query: 246 SNELISRDEDL 256
SNELISRDE +
Sbjct: 185 SNELISRDEGM 195
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+S+D D KL D+++FI HVL FF+A+D IVN N+++ Q V EA FY FQ
Sbjct: 35 LSKDYD-DFQLKLNNDQRHFIMHVLGFFSAADSIVNINVLDYMLQTVPELEAVYFYTFQA 93
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMENVH++MY LI T I D++++
Sbjct: 94 AMENVHTQMYGTLIITLIPDKKQQ 117
>gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae]
Length = 345
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 31/210 (14%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--- 131
T ++ ++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE++L+K
Sbjct: 10 TFQKERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTE 69
Query: 132 ----------VVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGIC 169
+ N ++ + E S P Y F+I +
Sbjct: 70 DFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSE 129
Query: 170 RYKV------KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + K I K I +P VK KA + RWI+++ S + ER++AFA+ EGIF
Sbjct: 130 VYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIF 189
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRD 253
+G++AS+FWL + +MPGL +N I RD
Sbjct: 190 QAGNYASMFWLTDKKIMPGLAMANRNICRD 219
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + KLT D+K +I ++LA +SD +VN+ L+E F+ ++Q E + FYGF
Sbjct: 60 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN+HSE+YS+++D + KD
Sbjct: 120 QIMMENIHSEVYSMMVDAFFKD 141
>gi|448931839|gb|AGE55400.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus MA-1E]
Length = 324
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 103/206 (50%), Gaps = 41/206 (19%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV-------------- 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 5 EPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREKLNDDERHFI 64
Query: 135 -------------------TNF--EIRALKTGEEKASHSRNEP-YLFRIKLAPGGICRYK 172
TNF E+ + + A + NE + + L + +
Sbjct: 65 KHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDE 124
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
++ + I P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IF
Sbjct: 125 QERNELFDAIENI---PAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSH 258
WL+ +G+MPGL SNE ISRDE L
Sbjct: 181 WLRNKGVMPGLCLSNEFISRDEGLHQ 206
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 39 TTEEVPLNADVVDWREKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I D++ER
Sbjct: 99 YAYQTFNESIHSEQYALLIDALISDEQER 127
>gi|448928017|gb|AGE51589.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CviKI]
gi|448929037|gb|AGE52606.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CvsA1]
Length = 324
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 103/206 (50%), Gaps = 41/206 (19%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV-------------- 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 5 EPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREKLNDDERHFI 64
Query: 135 -------------------TNF--EIRALKTGEEKASHSRNEP-YLFRIKLAPGGICRYK 172
TNF E+ + + A + NE + + L + +
Sbjct: 65 KHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDE 124
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
++ + I P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IF
Sbjct: 125 QERNELFDAIENI---PAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSH 258
WL+ +G+MPGL SNE ISRDE L
Sbjct: 181 WLRNKGVMPGLCLSNEFISRDEGLHQ 206
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 39 TTEEVPLNADVVDWREKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I D++ER
Sbjct: 99 YAYQTFNESIHSEQYALLIDALISDEQER 127
>gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB]
Length = 229
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 50/192 (26%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVK 192
++ E K+ Y F+I + Y + I K I T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIAD 204
+KA+WALRWI D
Sbjct: 212 EKAEWALRWIQD 223
>gi|398366047|ref|NP_011696.3| ribonucleotide-diphosphate reductase subunit RNR4 [Saccharomyces
cerevisiae S288c]
gi|1710402|sp|P49723.1|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2;
AltName: Full=Ribonucleotide reductase R2 subunit 2;
AltName: Full=Ribonucleotide reductase small subunit 2
gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae]
gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae]
gi|285812375|tpg|DAA08275.1| TPA: ribonucleotide-diphosphate reductase subunit RNR4
[Saccharomyces cerevisiae S288c]
gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB]
gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO]
gi|349578387|dbj|GAA23553.1| K7_Rnr4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299434|gb|EIW10528.1| Rnr4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 345
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 31/210 (14%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--- 131
T ++ ++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE++L+K
Sbjct: 10 TFQKERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTE 69
Query: 132 ----------VVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGIC 169
+ N ++ + E S P Y F+I +
Sbjct: 70 DFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSE 129
Query: 170 RYKV------KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + K I K I +P VK KA + RWI+++ S + ER++AFA+ EGIF
Sbjct: 130 VYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIF 189
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRD 253
+G++AS+FWL + +MPGL +N I RD
Sbjct: 190 QAGNYASMFWLTDKKIMPGLAMANRNICRD 219
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + KLT D+K +I ++LA +SD +VN+ L+E F+ ++Q E + FYGF
Sbjct: 60 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN++SE+YS+++D + KD
Sbjct: 120 QIMMENIYSEVYSMMVDAFFKD 141
>gi|351737466|gb|AEQ60501.1| ribonucleotide reductase small subunit [Acanthamoeba castellanii
mamavirus]
gi|398257152|gb|EJN40760.1| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
lentillevirus]
Length = 417
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 104/204 (50%), Gaps = 42/204 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT----------NFEI 139
EP+L ++ + PI+YQ +W YK ++WT EEVDL+K V NF +
Sbjct: 99 EPILSLTSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWNNHLSDDDRNFIM 158
Query: 140 RALK-----TGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK----------- 183
L G A+ N + +IK A C Y + + G+
Sbjct: 159 HVLAFFAAADGIVNANIKENLIDVVKIKEAE---CAYGFQYAMENAHGEMYSLMLTTFVK 215
Query: 184 ----------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+I+TMP +KKKADW +WI + ++ +++AF+ VEG+FFSGSFASIFW
Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKSD-KTYAHKLVAFSIVEGVFFSGSFASIFW 274
Query: 234 LKKRGL--MPGLTFSNELISRDED 255
LK R + MPGL SN+ I+RDE+
Sbjct: 275 LKTREMHVMPGLIISNQFIARDEN 298
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 254 EDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D++ WN L+ D++ FI HVLAFFAA+DGIVN N+ E V+I EA C YGFQ AME
Sbjct: 140 KDVNDWNNHLSDDDRNFIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAME 199
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N H EMYSL++ T++KD R
Sbjct: 200 NAHGEMYSLMLTTFVKDDALR 220
>gi|401625558|gb|EJS43558.1| rnr4p [Saccharomyces arboricola H-6]
Length = 346
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 106/202 (52%), Gaps = 31/202 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE++L+K
Sbjct: 18 MKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDSEDFQELTDD 77
Query: 132 --VVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGICRYKV---- 173
V N ++ + E S P Y F+I + Y +
Sbjct: 78 QKAYVGNLLALSISSDNIVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYAEVYSMMVDA 137
Query: 174 --KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
K I K + T+P VK KA + +WI ++ S + ER++AFA+ EGIF +G++AS+
Sbjct: 138 FFKDPKNIPLFKEVATLPEVKDKAAFVEKWIFNDDSLYAERLVAFAAKEGIFQAGNYASM 197
Query: 232 FWLKKRGLMPGLTFSNELISRD 253
FWL + +MPGL +N I RD
Sbjct: 198 FWLTDKNIMPGLAMANRNICRD 219
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 57/82 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + +LT D+K ++ ++LA +SD IVN+ L+E F+ ++Q E + FYGF
Sbjct: 60 EEIELAKDSEDFQELTDDQKAYVGNLLALSISSDNIVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN+++E+YS+++D + KD
Sbjct: 120 QIMMENIYAEVYSMMVDAFFKD 141
>gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
Length = 252
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +DL WN KL +E+YF+S VLAFFAASDGIV ENL+E F+ EVQ EA+ FYG
Sbjct: 125 EEVDLSKDLDDWNNKLNDNERYFVSRVLAFFAASDGIVGENLIENFSAEVQSPEAKSFYG 184
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI MEN+HSEMYSLLI+TY+KD +E
Sbjct: 185 FQIMMENIHSEMYSLLIETYVKDPQE 210
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 40/178 (22%)
Query: 73 KSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK- 131
+ LKQ+ A EPLL++N RR+V+FPI+Y +IW YKKAEASFWT EEVDLSK
Sbjct: 80 RHKLKQLEAE-------EPLLQENKRRYVMFPIKYHEIWNFYKKAEASFWTCEEVDLSKD 132
Query: 132 -----------------VVVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPG 166
V+ F GE E S P Y F+I +
Sbjct: 133 LDDWNNKLNDNERYFVSRVLAFFAASDGIVGENLIENFSAEVQSPEAKSFYGFQIMMENI 192
Query: 167 GICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFA 217
Y + + + IE +PC+ KKA+WA++WI D+ + + ER++AF
Sbjct: 193 HSEMYSLLIETYVKDPQEADFLFNAIENIPCITKKAEWAIKWIQDKDALYAERLVAFC 250
>gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
polyphaga mimivirus]
gi|77416594|sp|Q7T6Y9.2|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
polyphaga mimivirus]
gi|339061248|gb|AEJ34552.1| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
mimivirus]
Length = 417
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 104/204 (50%), Gaps = 42/204 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT----------NFEI 139
EP+L ++ + PI+YQ +W YK ++WT EEVDL+K V NF +
Sbjct: 99 EPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWNNHLSDDDRNFIM 158
Query: 140 RALK-----TGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK----------- 183
L G A+ N + +IK A C Y + + G+
Sbjct: 159 HVLAFFAAADGIVNANIKENLIDVVKIKEAE---CAYGFQYAMENAHGEMYSLMLTTFVK 215
Query: 184 ----------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+I+TMP +KKKADW +WI + ++ +++AF+ VEG+FFSGSFASIFW
Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKSD-KTYAHKLVAFSIVEGVFFSGSFASIFW 274
Query: 234 LKKRGL--MPGLTFSNELISRDED 255
LK R + MPGL SN+ I+RDE+
Sbjct: 275 LKTREMHVMPGLIISNQFIARDEN 298
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 254 EDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D++ WN L+ D++ FI HVLAFFAA+DGIVN N+ E V+I EA C YGFQ AME
Sbjct: 140 KDVNDWNNHLSDDDRNFIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAME 199
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N H EMYSL++ T++KD R
Sbjct: 200 NAHGEMYSLMLTTFVKDDALR 220
>gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus]
gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple
nucleopolyhedrovirus]
Length = 313
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 35/192 (18%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASH------- 151
R V+ PI + D+W YK+A W EEVD+S+ +FE + H
Sbjct: 5 RKVLKPILHDDLWAAYKQAFDCMWKVEEVDMSRDY-DDFESKLNDDERYFIKHVLAFFAA 63
Query: 152 -------------SRNEP-----YLFRIKLAPGGIC--RYKV-------KKGGKITGGKT 184
RN P Y + +++ + Y + + + T
Sbjct: 64 ADSIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLNA 123
Query: 185 IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
E +PCV+KKA WA++WI + ++ ER++AFA VEG+FFSGSFA+IF++K +G+MPGLT
Sbjct: 124 FEHVPCVRKKAQWAMKWIESDTATLAERMVAFAIVEGVFFSGSFAAIFYIKTKGIMPGLT 183
Query: 245 FSNELISRDEDL 256
FSNELISRDE L
Sbjct: 184 FSNELISRDEGL 195
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+SRD D +KL DE+YFI HVLAFFAA+D IVN NL+E + V EA+ FY Q+
Sbjct: 35 MSRDYD-DFESKLNDDERYFIKHVLAFFAAADSIVNINLIEYMQRNVPELEAQYFYNLQV 93
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
+E VH+EMY+LLI+ IKD+ ER
Sbjct: 94 LIECVHTEMYNLLIEQLIKDEHER 117
>gi|22549454|ref|NP_689227.1| rr2b gene product [Mamestra configurata NPV-B]
gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein
[Mamestra configurata NPV-B]
Length = 313
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 33/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------KVVVTN------FEIRALKTGE 146
R ++PI ++D+++ YK+AEA FW EEVDLS ++ + N + +
Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLKLNNDQRHFIMHVLGFFSAA 64
Query: 147 EKASHSRNEPYLFRIKLAPGGICRYKVKKG-----GKITGGKTIETMP------------ 189
+ + Y+ + + Y + ++ G I +P
Sbjct: 65 DSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAF 124
Query: 190 ----CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
CV+KK DWAL+W ++ + ER++AFA VEG+FFSGSFA+IF++K G+MPGLTF
Sbjct: 125 DNISCVRKKDDWALKWTKNKKLTLAERLVAFAIVEGVFFSGSFAAIFYIKTLGIMPGLTF 184
Query: 246 SNELISRDEDL 256
SNELISRDE +
Sbjct: 185 SNELISRDEGM 195
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+S+D D KL D+++FI HVL FF+A+D IVN N+++ Q V EA FY FQ
Sbjct: 35 LSKDYD-DFQLKLNNDQRHFIMHVLGFFSAADSIVNINVLDYMLQTVPELEAVYFYTFQA 93
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
AMENVH++MY LI T I D++++
Sbjct: 94 AMENVHTQMYGTLIITLIPDKKQQ 117
>gi|47213105|emb|CAF89525.1| unnamed protein product [Tetraodon nigroviridis]
Length = 198
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 60/64 (93%)
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
KKADWAL WI ++ +S+GERV+AFA+VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISR
Sbjct: 14 KKADWALNWIGNQKASYGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISR 73
Query: 253 DEDL 256
DE L
Sbjct: 74 DEGL 77
>gi|356577191|ref|XP_003556711.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase small chain-like [Glycine max]
Length = 226
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 72/101 (71%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
+LK+ ++ F E + DL HW L+ +++FI+HVL FFAASD IV ENL RF
Sbjct: 5 YLKEICVLDASCFYTEEVDLSSDLRHWATLSDGKRHFITHVLTFFAASDDIVLENLGSRF 64
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
T+E+Q+ EAR FYGFQIA+EN+HSEMYSL ++TY KD ++
Sbjct: 65 TKEIQLLEARAFYGFQIAIENIHSEMYSLFLETYTKDSXKK 105
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ I T+PC+ KKA WAL+ I + + SF ER++AFA V GIFFSGSF +IFWLKKRGLM G
Sbjct: 110 RAINTIPCITKKAQWALQXI-NASESFAERLMAFACVXGIFFSGSFCAIFWLKKRGLMSG 168
Query: 243 LTFSNELISRDEDLSH 258
LTFSNE ISRDE L +
Sbjct: 169 LTFSNEFISRDEGLHY 184
>gi|403217182|emb|CCK71677.1| hypothetical protein KNAG_0H02620 [Kazachstania naganishii CBS
8797]
Length = 346
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 113/215 (52%), Gaps = 36/215 (16%)
Query: 76 LKQVSAPVQENVETEP---LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKV 132
L Q SA + ETE LL +N RRFV+FPI+Y +IW YKKAEASFWTAEE++LSK
Sbjct: 7 LSQFSASREATHETEKDEILLIENKRRFVMFPIKYHEIWAAYKKAEASFWTAEEIELSKD 66
Query: 133 V-------VTNFEIRALKT-------GE--------EKASHSRNEP-----YLFRIKLAP 165
V VT ++ LK GE E+ S P Y F+I +
Sbjct: 67 VEDIADKKVTAEQLAFLKKFMALLTLGEDIVNRHLIERFSAELQNPEGKSFYGFQIMMEN 126
Query: 166 GGICRYKVKKGGKITGGKTIETMPCVK------KKADWALRWIADEASSFGERVIAFASV 219
Y + G + I+ +K +K D+ RWI D S +GER++AFA+
Sbjct: 127 IYDEVYSMVIDAYFNGPENIKCYEEIKNCSHFAQKTDFINRWIKDPESLYGERLVAFAAK 186
Query: 220 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
EGIF SG+ A++F L ++GL+ GL +N I RD+
Sbjct: 187 EGIFLSGAHAAVFALGEKGLLAGLNKANTNIYRDK 221
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 250 ISRD-EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
+S+D ED++ K+T ++ F+ +A + IVN +L+ERF+ E+Q E + FYGFQ
Sbjct: 63 LSKDVEDIAD-KKVTAEQLAFLKKFMALLTLGEDIVNRHLIERFSAELQNPEGKSFYGFQ 121
Query: 309 IAMENVHSEMYSLLIDTYIKDQE 331
I MEN++ E+YS++ID Y E
Sbjct: 122 IMMENIYDEVYSMVIDAYFNGPE 144
>gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789]
gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291]
gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118]
gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796]
gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23]
gi|365765447|gb|EHN06955.1| Rnr4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 345
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 108/210 (51%), Gaps = 31/210 (14%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--- 131
T ++ ++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE++L+K
Sbjct: 10 TFQKERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTE 69
Query: 132 ----------VVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGIC 169
+ N ++ + E S P Y F+I +
Sbjct: 70 DFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSE 129
Query: 170 RYKV------KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + K I K I +P VK K + RWI+++ S + ER++AFA+ EGIF
Sbjct: 130 VYSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWISNDDSLYAERLVAFAAKEGIF 189
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRD 253
+G++AS+FWL + +MPGL +N I RD
Sbjct: 190 QAGNYASMFWLTDKKIMPGLAMANRNICRD 219
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + KLT D+K +I ++LA +SD +VN+ L+E F+ ++Q E + FYGF
Sbjct: 60 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN++SE+YS+++D + KD
Sbjct: 120 QIMMENIYSEVYSMMVDAFFKD 141
>gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 238
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V+KKA+WAL WI D+ + F ER+IAFA VEGI FSGSF +I+WLKKRGLMPG
Sbjct: 28 RAIETVPSVRKKAEWALSWINDD-NCFSERLIAFACVEGILFSGSFCAIYWLKKRGLMPG 86
Query: 243 LTFSNELISRDEDL 256
LTFSNELISRDE L
Sbjct: 87 LTFSNELISRDEGL 100
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 311 MENVHSEMYSLLIDTYIKDQEER 333
MEN+HSE YSLLID YIKD E+
Sbjct: 1 MENIHSETYSLLIDNYIKDPAEK 23
>gi|441432445|ref|YP_007354487.1| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383525|gb|AGC02051.1| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 401
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 50/208 (24%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L R+ ++PIQY ++WK YK W EEVDLSK V
Sbjct: 82 EPILSTASERYTVYPIQYNNVWKNYKDQLKINWVVEEVDLSKDVSDWNNLLSENDRIFIM 141
Query: 134 -----------VTNFEIR-----ALKTGEEKASHSRNEPYLFRIKLAPGGI--------C 169
+ N I+ +K E + ++ + F ++ A G +
Sbjct: 142 HVLAFFASADGIVNANIKENLIDVVKIKEAECAYGKQ----FEMENAHGEMYSLMLDTFV 197
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
+ + K I K I+TMP +KKKADW +WI + ++ +++AFA VEG+FFSGSFA
Sbjct: 198 KDDILKDKLI---KAIKTMPSIKKKADWCKKWIKSD-KTYAHKLVAFAIVEGVFFSGSFA 253
Query: 230 SIFWLKKR--GLMPGLTFSNELISRDED 255
SIFWLK R +MPGL SN+ I+RDE+
Sbjct: 254 SIFWLKTRQGNVMPGLIKSNKFIARDEN 281
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 248 ELISRDEDLSHWNKL-TRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D+S WN L + +++ FI HVLAFFA++DGIVN N+ E V+I EA C YG
Sbjct: 117 EEVDLSKDVSDWNNLLSENDRIFIMHVLAFFASADGIVNANIKENLIDVVKIKEAECAYG 176
Query: 307 FQIAMENVHSEMYSLLIDTYIKD 329
Q MEN H EMYSL++DT++KD
Sbjct: 177 KQFEMENAHGEMYSLMLDTFVKD 199
>gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13]
Length = 328
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 31/202 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE++L+K
Sbjct: 1 MKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDD 60
Query: 132 --VVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGICRYKV---- 173
+ N ++ + E S P Y F+I + Y +
Sbjct: 61 QKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDA 120
Query: 174 --KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
K I K I +P VK K + RWI+++ S + ER++AFA+ EGIF +G++AS+
Sbjct: 121 FFKDPKNIPLFKEIANLPEVKHKTAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASM 180
Query: 232 FWLKKRGLMPGLTFSNELISRD 253
FWL + +MPGL +N I RD
Sbjct: 181 FWLTDKKIMPGLAMANRNICRD 202
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + KLT D+K +I ++LA +SD +VN+ L+E F+ ++Q E + FYGF
Sbjct: 43 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN++SE+YS+++D + KD
Sbjct: 103 QIMMENIYSEVYSMMVDAFFKD 124
>gi|451927338|gb|AGF85216.1| reductase small subunit [Moumouvirus goulette]
Length = 398
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 50/224 (22%)
Query: 74 STLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
S K ++ + + TEP+L R+ ++PI Y ++WK YK W EEVDLSK V
Sbjct: 63 SYCKYINDFENDKIITEPILSTASERYTVYPIVYNNVWKNYKDQLKINWVVEEVDLSKDV 122
Query: 134 ---------------------------VTNFEIRA-----LKTGEEKASHSRNEPYLFRI 161
+ N I+ +K E + ++ + F +
Sbjct: 123 SDWNNLLSDNDRLFIMHVLAFFASADGIVNANIKENLIDIVKIKEAECAYGKQ----FEM 178
Query: 162 KLAPGGI--------CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERV 213
+ A G + + + K I K I+TMP +KKKA+W +WI + ++ ++
Sbjct: 179 ENAHGEMYSLMLDTFVKDDILKDKLI---KAIKTMPSIKKKAEWCKKWIKSD-KTYAHKL 234
Query: 214 IAFASVEGIFFSGSFASIFWLKKR--GLMPGLTFSNELISRDED 255
+AFA+VEG+FFSGSFASIFWLK R +MPGL SN+ I+RDE+
Sbjct: 235 VAFATVEGVFFSGSFASIFWLKTRQGNVMPGLIKSNKFIARDEN 278
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 248 ELISRDEDLSHWNKLTRD-EKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D+S WN L D ++ FI HVLAFFA++DGIVN N+ E V+I EA C YG
Sbjct: 114 EEVDLSKDVSDWNNLLSDNDRLFIMHVLAFFASADGIVNANIKENLIDIVKIKEAECAYG 173
Query: 307 FQIAMENVHSEMYSLLIDTYIKD 329
Q MEN H EMYSL++DT++KD
Sbjct: 174 KQFEMENAHGEMYSLMLDTFVKD 196
>gi|375073645|gb|AFA34381.1| ribonucleotide diphosphate reductase, partial [Ostrea edulis]
Length = 233
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V KKA+WA++W+ + + + ER++AF++VEGIFFSGSF SIFWLKKRGLMPG
Sbjct: 30 RGIETIPSVGKKANWAIKWM-ESSDVYAERLVAFSAVEGIFFSGSFCSIFWLKKRGLMPG 88
Query: 243 LTFSNELISRDEDL 256
LTFSNELISRDE L
Sbjct: 89 LTFSNELISRDEGL 102
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
IAMEN+HSEMYSLLIDTYI D+ E+
Sbjct: 1 IAMENIHSEMYSLLIDTYISDEVEK 25
>gi|448825572|ref|YP_007418503.1| ribonucleoside-diphosphate reductase small chain [Megavirus lba]
gi|444236757|gb|AGD92527.1| ribonucleoside-diphosphate reductase small chain [Megavirus lba]
Length = 406
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 52/248 (20%)
Query: 46 LFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPI 105
+F+ +N D+ +Q+ K +S K VS + ++ EP+L R+ ++PI
Sbjct: 54 IFINENNQNDI---IQEEKYLES------YQKYVSDFDNDVIQFEPVLSSTNERYTVYPI 104
Query: 106 QYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEI 139
Y +WK YK + W EEVDLSK V + N I
Sbjct: 105 IYNQVWKNYKDQLKNNWVVEEVDLSKDVQHWNKLSENDRIFIMHVLAFFASADGIVNANI 164
Query: 140 R-----ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-----TIETMP 189
+ +K E + ++ + F ++ A G + + K K I+TMP
Sbjct: 165 KENLIDVVKIKEAECAYGKQ----FEMENAHGEMYSLMLDTFVKDDILKKNLIEAIKTMP 220
Query: 190 CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR--GLMPGLTFSN 247
+KKKADW +WI + ++ ++ AFA VEG+FFSGSFASIFWLK R +MPGL SN
Sbjct: 221 SIKKKADWCQKWIKSD-KTYAHKLAAFAVVEGVFFSGSFASIFWLKTRKGSVMPGLIKSN 279
Query: 248 ELISRDED 255
+ I+RDE+
Sbjct: 280 KFIARDEN 287
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 59/82 (71%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HWNKL+ +++ FI HVLAFFA++DGIVN N+ E V+I EA C YG
Sbjct: 124 EEVDLSKDVQHWNKLSENDRIFIMHVLAFFASADGIVNANIKENLIDVVKIKEAECAYGK 183
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
Q MEN H EMYSL++DT++KD
Sbjct: 184 QFEMENAHGEMYSLMLDTFVKD 205
>gi|363540639|ref|YP_004894645.1| mg594 gene product [Megavirus chiliensis]
gi|350611804|gb|AEQ33248.1| ribonucleoside-diphosphate reductase small chain [Megavirus
chiliensis]
gi|371943945|gb|AEX61773.1| ribonucleoside-diphosphate reductase small chain [Megavirus
courdo7]
gi|425701506|gb|AFX92668.1| ribonucleoside-diphosphate reductase small chain [Megavirus
courdo11]
Length = 406
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 52/248 (20%)
Query: 46 LFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPI 105
+F+ +N D+ +Q+ K +S K VS + ++ EP+L R+ ++PI
Sbjct: 54 IFINENNQNDI---IQEEKYLES------YQKYVSDFDNDVIQFEPVLSSTNERYTVYPI 104
Query: 106 QYQDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEI 139
Y +WK YK + W EEVDLSK V + N I
Sbjct: 105 IYNQVWKNYKDQLKNNWVVEEVDLSKDVQHWNKLSENDRIFIMHVLAFFASADGIVNANI 164
Query: 140 R-----ALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-----TIETMP 189
+ +K E + ++ + F ++ A G + + K K I+TMP
Sbjct: 165 KENLIDVVKIKEAECAYGKQ----FEMENAHGEMYSLMLDTFVKDDILKKNLIEAIKTMP 220
Query: 190 CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR--GLMPGLTFSN 247
+KKKADW +WI + ++ ++ AFA VEG+FFSGSFASIFWLK R +MPGL SN
Sbjct: 221 SIKKKADWCQKWIKSD-KTYAHKLAAFAVVEGVFFSGSFASIFWLKTRKGSVMPGLIKSN 279
Query: 248 ELISRDED 255
+ I+RDE+
Sbjct: 280 KFIARDEN 287
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 59/82 (71%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HWNKL+ +++ FI HVLAFFA++DGIVN N+ E V+I EA C YG
Sbjct: 124 EEVDLSKDVQHWNKLSENDRIFIMHVLAFFASADGIVNANIKENLIDVVKIKEAECAYGK 183
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
Q MEN H EMYSL++DT++KD
Sbjct: 184 QFEMENAHGEMYSLMLDTFVKD 205
>gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 226
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 37 AIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGL 95
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 96 TFSNELISRDEGL 108
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 28/30 (93%)
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
FYGFQIA+EN+HSEMYS LI+T I+D+EE+
Sbjct: 2 FYGFQIAIENIHSEMYSKLIETLIRDKEEQ 31
>gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 211
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 22 AIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGL 80
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 81 TFSNELISRDEGL 93
>gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
Length = 310
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 41/194 (21%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE----------- 147
+F +FPIQY++IW+ YK EA+FWT EE+D ++ + ++ L GE+
Sbjct: 6 KFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFA 62
Query: 148 KASHSRNEPYLFR----IKLAPGGICRYKVKKGGKITGGKT------------------- 184
++ NE L R I++A C ++ ++ +T
Sbjct: 63 QSEGMINENLLTRFYGEIEIAEAR-CFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121
Query: 185 --IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
IE +P VK+KA+W ++WI+ + + R+IAF VEG+FF+GSF +I++ +KRGL+ G
Sbjct: 122 NAIENVPTVKRKAEWVMKWISSD-KTLAMRLIAFGLVEGLFFAGSFCAIYYFRKRGLLAG 180
Query: 243 LTFSNELISRDEDL 256
L SN+LI+RDE L
Sbjct: 181 LAASNDLIARDEGL 194
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL+ KLT EK+FI HVLAFFA S+G++NENL+ RF E++I EARCF
Sbjct: 30 TTEELDFAQDLADLAKLTEGEKHFIRHVLAFFAQSEGMINENLLTRFYGEIEIAEARCFL 89
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q E +H+E Y+L ++TYI D EER
Sbjct: 90 ALQAFNEVIHAETYALQLETYIPDVEER 117
>gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 205
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P ++KKA WA +WIA + +SF R +AFA VEGIFFSGSFA+IFWLKKRGLMPGL
Sbjct: 16 AIENIPSIRKKALWAQKWIASD-TSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGL 74
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 75 TFSNELISRDEGL 87
>gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 247
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V+ KA+WAL WI D+ + F ER++A+A VEGI FSGSF ++FWLKKRGLMPG
Sbjct: 52 EAIETIPSVQHKAEWALAWINDD-NCFAERLVAYACVEGILFSGSFCALFWLKKRGLMPG 110
Query: 243 LTFSNELISRDEDL 256
LTFSNELISRDE L
Sbjct: 111 LTFSNELISRDEGL 124
>gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata]
Length = 335
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 55/282 (19%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------- 133
++E + E LL +N RRFV+FPI+Y +IW YKK EA+FWTAE+++L+K V
Sbjct: 1 MKEGEKDEVLLMENKRRFVMFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWETLSAG 60
Query: 134 ----VTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGG 177
N+ +T EK S P Y F+I + Y +
Sbjct: 61 QKEFFGNYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDA 120
Query: 178 KITGGKTIETMP-----C----VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
T +++ +P C VK K++WA RW+ D+ S + ER++A A+ EGIF SG+F
Sbjct: 121 LFT---SVDNIPLFKAVCQQEEVKAKSEWAHRWVFDDESLYAERLVASAAREGIFMSGAF 177
Query: 229 ASIFWL-KKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNEN 287
A+++WL K++G+MPG+ + N + RD ++ FA N
Sbjct: 178 AALYWLTKEKGIMPGVAMAT------------NHICRDRGFYADFACLLFAHLKTKPNPK 225
Query: 288 LVER-FTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIK 328
++E+ T+ V+I +A Y + +E + ++ ID YI+
Sbjct: 226 IIEQIITEAVEIEKAH--YRNSMPIEKLGMDLKE--IDQYIE 263
>gi|350532636|ref|ZP_08911577.1| Ribonucleoside-diphosphate reductase [Vibrio rotiferianus DAT722]
gi|424032641|ref|ZP_17772058.1| ribonucleoside-diphosphate reductase subunit M2 [Vibrio cholerae
HENC-01]
gi|424037729|ref|ZP_17776454.1| ribonucleoside-diphosphate reductase subunit M2 [Vibrio cholerae
HENC-02]
gi|408875699|gb|EKM14843.1| ribonucleoside-diphosphate reductase subunit M2 [Vibrio cholerae
HENC-01]
gi|408895210|gb|EKM31674.1| ribonucleoside-diphosphate reductase subunit M2 [Vibrio cholerae
HENC-02]
Length = 310
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 41/194 (21%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE----------- 147
+F +FPIQY++IW+ YK EA+FWT EE+D ++ + ++ L GE+
Sbjct: 6 KFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFA 62
Query: 148 KASHSRNEPYLFR----IKLAPGGICRYKVKKGGKITGGKT------------------- 184
++ NE L R I++A C ++ ++ +T
Sbjct: 63 QSEGMINENLLTRFYGEIEIAEAR-CFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121
Query: 185 --IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
IE +P VK+KA+W ++WI+ + R+IAF VEG+FF+GSF +I++ +KRGL+ G
Sbjct: 122 NAIENVPTVKRKAEWVMKWISSD-KPLAMRLIAFGLVEGLFFAGSFCAIYYFRKRGLLAG 180
Query: 243 LTFSNELISRDEDL 256
L SN+LI+RDE L
Sbjct: 181 LAASNDLIARDEGL 194
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL+ KLT EK+FI HVLAFFA S+G++NENL+ RF E++I EARCF
Sbjct: 30 TTEELDFAQDLADLAKLTEGEKHFIRHVLAFFAQSEGMINENLLTRFYGEIEIAEARCFL 89
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q E +H+E Y+L ++TYI D EER
Sbjct: 90 ALQAFNEVIHAETYALQLETYIPDVEER 117
>gi|444425042|ref|ZP_21220490.1| ribonucleotide reductase small subunit [Vibrio campbellii CAIM 519
= NBRC 15631]
gi|444241652|gb|ELU53173.1| ribonucleotide reductase small subunit [Vibrio campbellii CAIM 519
= NBRC 15631]
Length = 310
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 41/194 (21%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE----------- 147
+F +FPIQY++IW+ YK EA+FWT EE+D ++ + ++ L GE+
Sbjct: 6 KFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFA 62
Query: 148 KASHSRNEPYLFR----IKLAPGGICRYKVKKGGKITGGKT------------------- 184
++ NE L R I++A C ++ ++ +T
Sbjct: 63 QSEGMINENLLTRFYGEIEIAEAR-CFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121
Query: 185 --IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
IE +P VK+KA+W ++WI+ + R+IAF VEG+FF+GSF +I++ +KRGL+ G
Sbjct: 122 NAIENVPTVKRKAEWVMKWISSD-KPLAMRLIAFGLVEGLFFAGSFCAIYYFRKRGLLAG 180
Query: 243 LTFSNELISRDEDL 256
L SN+LI+RDE L
Sbjct: 181 LAASNDLIARDEGL 194
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL+ KLT EK+FI HVLAFFA S+G++NENL+ RF E++I EARCF
Sbjct: 30 TTEELDFAQDLADLAKLTEGEKHFIRHVLAFFAQSEGMINENLLTRFYGEIEIAEARCFL 89
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q E +H+E Y+L ++TYI D EER
Sbjct: 90 ALQAFNEVIHAETYALQLETYIPDVEER 117
>gi|424046200|ref|ZP_17783763.1| ribonucleoside-diphosphate reductase subunit M2 [Vibrio cholerae
HENC-03]
gi|408885457|gb|EKM24174.1| ribonucleoside-diphosphate reductase subunit M2 [Vibrio cholerae
HENC-03]
Length = 310
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 41/194 (21%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE----------- 147
+F +FPIQY++IW+ YK EA+FWT EE+D ++ + ++ L GE+
Sbjct: 6 KFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFA 62
Query: 148 KASHSRNEPYLFR----IKLAPGGICRYKVKKGGKITGGKT------------------- 184
++ NE L R I++A C ++ ++ +T
Sbjct: 63 QSEGMINENLLTRFYGEIEIAEAR-CFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121
Query: 185 --IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
IE +P VK+KA+W ++WI+ + R+IAF VEG+FF+GSF +I++ +KRGL+ G
Sbjct: 122 NAIENVPTVKRKAEWVMKWISSD-KPLAMRLIAFGLVEGLFFAGSFCAIYYFRKRGLLAG 180
Query: 243 LTFSNELISRDEDL 256
L SN+LI+RDE L
Sbjct: 181 LAASNDLIARDEGL 194
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL+ KLT EK+FI HVLAFFA S+G++NENL+ RF E++I EARCF
Sbjct: 30 TTEELDFAQDLADLAKLTEGEKHFIRHVLAFFAQSEGMINENLLTRFYGEIEIAEARCFL 89
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q E +H+E Y+L ++TYI D EER
Sbjct: 90 ALQAFNEVIHAETYALQLETYIPDVEER 117
>gi|398017722|ref|XP_003862048.1| ribonucleoside-diphosphate reductase small chain, putative, partial
[Leishmania donovani]
gi|322500276|emb|CBZ35354.1| ribonucleoside-diphosphate reductase small chain, putative, partial
[Leishmania donovani]
Length = 196
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 103 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 162
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 163 QLMMENIHSETYSVLLDTYITDSEEK 188
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL 129
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 64 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 107
>gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
AND4]
gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
AND4]
Length = 310
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 35/191 (18%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----VVVTNFE---IRALKTGEEKAS 150
+F +FPIQY++IW+ YK EA+FWT EE+D ++ V +T E IR + ++
Sbjct: 6 KFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLPDLVKLTEGEKHFIRHVLAFFAQSE 65
Query: 151 HSRNEPYLFR----IKLAPGGICRYKVKKGGKITGGKT---------------------I 185
NE L R I++A C ++ ++ +T I
Sbjct: 66 GMINENLLTRFYGEIEIAEAR-CFLALQAFNEVIHAETYALQLETYIPDVEERERLFNAI 124
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
E +P V++KA W ++WI+ + R+IAF VEG+FF+GSF +I++ +KRGL+ GL
Sbjct: 125 ENVPTVQRKAQWVMKWISSD-KPLAMRLIAFGLVEGLFFAGSFCAIYYFRKRGLLAGLAA 183
Query: 246 SNELISRDEDL 256
SN+LI+RDE L
Sbjct: 184 SNDLIARDEGL 194
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 60/88 (68%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL KLT EK+FI HVLAFFA S+G++NENL+ RF E++I EARCF
Sbjct: 30 TTEELDFAQDLPDLVKLTEGEKHFIRHVLAFFAQSEGMINENLLTRFYGEIEIAEARCFL 89
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q E +H+E Y+L ++TYI D EER
Sbjct: 90 ALQAFNEVIHAETYALQLETYIPDVEER 117
>gi|448926378|gb|AGE49955.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus Can18-4]
Length = 359
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 41/222 (18%)
Query: 74 STLKQVSAPVQENVETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKV 132
S L+ + + EPLL D R++ FPI+Y D++ MYKKA ++FWT EEV L++
Sbjct: 24 SVLRYIRTDTMAIINQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQD 83
Query: 133 V------VTNFEIRALKT--------------------GEEKASHSRNEPYLFRI----- 161
+ + + E +KT E S Y +++
Sbjct: 84 IADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESI 143
Query: 162 -----KLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216
L + ++ +TI P V KKA WA ++++ + SF ER++A+
Sbjct: 144 HSEMYSLLLDALIEDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAW 199
Query: 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSH 258
VEG+ FSGSF +IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 200 VCVEGLLFSGSFCAIFWLRNRGVMPGLGLSNEFISRDEGLHQ 241
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + ++D++ W +KL DE++FI +L FFA SDG+V EN+ F+ EV AR FY
Sbjct: 76 EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYA 135
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E++HSEMYSLL+D I+D ER
Sbjct: 136 YQMFNESIHSEMYSLLLDALIEDDAER 162
>gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii]
Length = 87
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W L +DE++FISHVLAFFAASDGIVNENLVERF++EVQ+TEAR FYGF
Sbjct: 18 EEVDLSKDVAQWESLKKDERHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARFFYGF 77
Query: 308 QIAMENVHSE 317
QIA+EN+HSE
Sbjct: 78 QIAIENIHSE 87
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 109 DIWKMYKKAEASFWTAEEVDLSKVV 133
DIW+ YK+AEASFWTAEEVDLSK V
Sbjct: 2 DIWQFYKRAEASFWTAEEVDLSKDV 26
>gi|28393533|gb|AAO42187.1| putative ribonucleoside-diphosphate reductase small chain
[Arabidopsis thaliana]
Length = 243
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 58/66 (87%), Gaps = 1/66 (1%)
Query: 191 VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 250
V KKA+WA++WI + + SF ER++AFA VEGIFFSGSF SIFWLKKRGLMPGLTFSNELI
Sbjct: 51 VTKKAEWAMKWI-NGSQSFAERIVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELI 109
Query: 251 SRDEDL 256
SRDE L
Sbjct: 110 SRDEGL 115
>gi|440796690|gb|ELR17799.1| ribonucleosidediphosphate reductase, beta subunit [Acanthamoeba
castellanii str. Neff]
Length = 171
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%), Gaps = 2/72 (2%)
Query: 186 ETMPCVKKKADWALRWIADEA-SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
+T+P +KKKADWAL+WIA E +FG+R++ FA+VEGIFFS S SIFWLKKRGLMPGL
Sbjct: 24 QTIPSIKKKADWALKWIATEGVETFGQRLVGFAAVEGIFFSSS-CSIFWLKKRGLMPGLA 82
Query: 245 FSNELISRDEDL 256
FSNELISRDE L
Sbjct: 83 FSNELISRDEGL 94
>gi|343495113|ref|ZP_08733308.1| Ribonucleoside-diphosphate reductase [Vibrio nigripulchritudo ATCC
27043]
gi|342823810|gb|EGU58402.1| Ribonucleoside-diphosphate reductase [Vibrio nigripulchritudo ATCC
27043]
Length = 310
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 41/194 (21%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE----------- 147
+F +FPIQY++IW+ YK EA+FWT EE+D ++ + +++ L GE+
Sbjct: 6 KFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLP---DLQKLTEGEQHFIRHVLAFFA 62
Query: 148 KASHSRNEPYLFR----IKLAPGGICRYKVKKGGKITGGKT------------------- 184
++ NE L R I++A C ++ ++ +T
Sbjct: 63 QSEGMINENLLTRFYGEIEIAEAR-CFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121
Query: 185 --IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
I+ +P VK+KA W ++WI+ + R+IAF VEG+FF+GSF +I++ +KRGL+ G
Sbjct: 122 NAIDNVPTVKRKAQWVMKWISSD-KPLPMRLIAFGLVEGLFFAGSFCAIYYFRKRGLLAG 180
Query: 243 LTFSNELISRDEDL 256
L SN+LI+RDE L
Sbjct: 181 LAASNDLIARDEGL 194
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 60/88 (68%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL KLT E++FI HVLAFFA S+G++NENL+ RF E++I EARCF
Sbjct: 30 TTEELDFAQDLPDLQKLTEGEQHFIRHVLAFFAQSEGMINENLLTRFYGEIEIAEARCFL 89
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q E +H+E Y+L ++TYI D EER
Sbjct: 90 ALQAFNEVIHAETYALQLETYIPDVEER 117
>gi|132618|sp|P26713.1|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 103/210 (49%), Gaps = 54/210 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPARNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +I +LK++ +MPGL NE ISRDE +
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDEGM 200
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + +T++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESMTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus
OURT 88/3]
gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75]
gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1]
Length = 334
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 54/210 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 68
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 69 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 125
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ + ++ GER++ FA+VEGI F
Sbjct: 126 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPDRNTLGERLVGFAAVEGILFQN 177
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +I +LK++ +MPGL NE ISRDE +
Sbjct: 178 HFVAIQFLKEQNIMPGLVSYNEFISRDEGM 207
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 32 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 88
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 89 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 129
>gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 310
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 41/194 (21%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE----------- 147
+F +FPIQY++IW+ YK EA+FWT EE+D ++ + ++ L GE+
Sbjct: 6 KFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFA 62
Query: 148 KASHSRNEPYLFR----IKLAPGGICRYKVKKGGKITGGKT------------------- 184
++ NE L R I++A C ++ ++ +T
Sbjct: 63 QSEGMINENLLTRFYGEIEIAEAR-CFLALQAFNEVIHAETYALQLETYIPAVEERERLF 121
Query: 185 --IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
IE +P VK+KA+W ++WI+ + R+IAF VEG+FF+GSF +I++ +KR L+ G
Sbjct: 122 NAIENVPTVKRKAEWVMKWISSD-KPLTMRLIAFGLVEGLFFAGSFCAIYYFRKRSLLAG 180
Query: 243 LTFSNELISRDEDL 256
L SN+LI+RDE L
Sbjct: 181 LAASNDLIARDEGL 194
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 60/88 (68%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +DL+ KLT EK+FI HVLAFFA S+G++NENL+ RF E++I EARCF
Sbjct: 30 TTEELDFAQDLADLAKLTEGEKHFIRHVLAFFAQSEGMINENLLTRFYGEIEIAEARCFL 89
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
Q E +H+E Y+L ++TYI EER
Sbjct: 90 ALQAFNEVIHAETYALQLETYIPAVEER 117
>gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus]
gi|1172939|sp|P42492.1|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus]
gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small
Length = 334
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 54/208 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 68
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 69 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 125
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ + ++ GER++ FA+VEGI F
Sbjct: 126 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPDRNTLGERLVGFAAVEGILFQN 177
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDE 254
F +I +LK++ +MPGL NE ISRDE
Sbjct: 178 HFVAIQFLKEQNIMPGLVSYNEFISRDE 205
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 32 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 88
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 89 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 129
>gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus
Benin 97/1]
Length = 327
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 54/210 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ + ++ GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPDRNTLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +I +LK++ +MPGL NE ISRDE +
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDEGM 200
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>gi|215275540|sp|P0C8I2.1|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 102/208 (49%), Gaps = 54/208 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPTKNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDE 254
F +I +LK++ +MPGL NE ISRDE
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDE 198
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
virus FR483]
gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
virus FR483]
Length = 348
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R++ FPI+Y D++ MYKKA ++FWT EEV L++ + + + E
Sbjct: 26 INQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDER 85
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 86 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 145
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 146 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 201
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 202 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 230
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + ++D++ W +KL DE++FI +L FFA SDG+V EN+ F+ EV AR FY
Sbjct: 65 EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYA 124
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E++HSEMYSLL+D I+D ER
Sbjct: 125 YQMFNESIHSEMYSLLLDALIEDDAER 151
>gi|448928392|gb|AGE51963.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CVM-1]
Length = 326
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R++ FPI+Y D++ MYKKA ++FWT EEV L++ + + + E
Sbjct: 4 INQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDER 63
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 64 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 123
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 124 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 180 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + ++D++ W +KL DE++FI +L FFA SDG+V EN+ F+ EV AR FY
Sbjct: 43 EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYA 102
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E++HSEMYSLL+D I+D ER
Sbjct: 103 YQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|448927342|gb|AGE50916.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CVB-1]
Length = 326
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R+F FPI++ DI+ MYKKA ++FWT EEV L++ + + + E
Sbjct: 4 INKEPLLADIGNRKFSAFPIKFPDIFAMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDER 63
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 64 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 123
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 124 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 180 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDG 282
F F IF + K+ + T E + ++D++ W +KL DE++FI +L FFA SDG
Sbjct: 21 FPIKFPDIFAMYKKAVSTFWTV--EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDG 78
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V EN+ F+ EV AR FY +Q+ E++HSEMYSLL+D I+D ER
Sbjct: 79 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|448925356|gb|AGE48936.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus AP110A]
gi|448935661|gb|AGE59211.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus OR0704.2.2]
Length = 326
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R++ FPI+Y D++ MYKKA ++FWT EEV L++ + + + E
Sbjct: 4 INQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDER 63
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 64 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 123
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 124 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 180 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + ++D++ W +KL DE++FI +L FFA SDG+V EN+ F+ EV AR FY
Sbjct: 43 EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYA 102
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E++HSEMYSLL+D I+D ER
Sbjct: 103 YQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|215275539|sp|P0C8I1.1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 101/208 (48%), Gaps = 54/208 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKSQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPTKNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDE 254
F +I +LK++ +MPGL NE ISRDE
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDE 198
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKSQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>gi|448929397|gb|AGE52965.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CZ-2]
gi|448934571|gb|AGE58124.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus NW665.2]
Length = 326
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R++ FPI+Y D++ MYKKA ++FWT EEV L++ + + + E
Sbjct: 4 INQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDER 63
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 64 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 123
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 124 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 180 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + ++D++ W +KL DE++FI +L FFA SDG+V EN+ F+ EV AR FY
Sbjct: 43 EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYA 102
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E++HSEMYSLL+D I+D ER
Sbjct: 103 YQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|448927709|gb|AGE51282.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CVG-1]
Length = 326
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R++ FPI+Y D++ MYKKA ++FWT EEV L++ + + + E
Sbjct: 4 INQEPLLADIGNRKYSAFPIKYPDVFGMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDER 63
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 64 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 123
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 124 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 180 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + ++D++ W +KL DE++FI +L FFA SDG+V EN+ F+ EV AR FY
Sbjct: 43 EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYA 102
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E++HSEMYSLL+D I+D ER
Sbjct: 103 YQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella
virus MT325]
Length = 326
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 41/206 (19%)
Query: 90 EPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEIRAL 142
EPLL D R++ FPI+Y D++ MYKKA ++FWT EEV L++ + + + E +
Sbjct: 7 EPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDERHFI 66
Query: 143 KT--------------------GEEKASHSRNEPYLFRI----------KLAPGGICRYK 172
KT E S Y +++ L +
Sbjct: 67 KTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDD 126
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF +IF
Sbjct: 127 AERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFCAIF 182
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSH 258
WL+ RG+MPGL SNE ISRDE L
Sbjct: 183 WLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + ++D++ W +KL DE++FI +L FFA SDG+V EN+ F+ EV AR FY
Sbjct: 43 EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYA 102
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E++HSEMYSLL+D I+D ER
Sbjct: 103 YQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|448929743|gb|AGE53310.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus Fr5L]
Length = 326
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 103/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R++ FPI+Y D++ MYKKA +FWT EEV L++ + + + E
Sbjct: 4 INKEPLLADIGNRKYSAFPIKYPDVFAMYKKAVTTFWTVEEVPLNQDIADWRDKLNDDER 63
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 64 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 123
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 124 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 180 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDG 282
F + +F + K+ + T E + ++D++ W +KL DE++FI +L FFA SDG
Sbjct: 21 FPIKYPDVFAMYKKAVTTFWTV--EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDG 78
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V EN+ F+ EV AR FY +Q+ E++HSEMYSLL+D I+D ER
Sbjct: 79 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|366987723|ref|XP_003673628.1| hypothetical protein NCAS_0A06890 [Naumovozyma castellii CBS 4309]
gi|342299491|emb|CCC67247.1| hypothetical protein NCAS_0A06890 [Naumovozyma castellii CBS 4309]
Length = 345
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV-------- 134
++E+ + E LL +N RFV+FPI+Y +IW YKK EA+FWTAEE++L K V
Sbjct: 20 MKESEKDEILLIENAHRFVMFPIKYHEIWAAYKKVEAAFWTAEEIELEKDVQDFQKLTDD 79
Query: 135 -TNFEIRAL-----------KTGEEKASHSRNEP-----YLFRIKLAPGGICRYKVKKGG 177
F R L K EK S P Y F+I + Y +
Sbjct: 80 QKQFLARLLALLTVSEDVINKHIIEKFSAQLQNPEGKSFYGFQIMMENIYDEVYSMMVDT 139
Query: 178 KITGG------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
G K + ++P K+K D+ RWI ++ S + ER++A A+ EGIFFSG +A++
Sbjct: 140 FFNGPEKVPFFKEVPSLPEQKEKVDYINRWIKNQDSLYAERLVALAAKEGIFFSGVYAAL 199
Query: 232 FWLKKRGLMPGLTFSNELISRDE 254
WL + G PGLT +N+ I RD+
Sbjct: 200 GWLGQTGF-PGLTTANKSICRDK 221
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 60/85 (70%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I ++D+ + KLT D+K F++ +LA S+ ++N++++E+F+ ++Q E + FYGF
Sbjct: 62 EEIELEKDVQDFQKLTDDQKQFLARLLALLTVSEDVINKHIIEKFSAQLQNPEGKSFYGF 121
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEE 332
QI MEN++ E+YS+++DT+ E+
Sbjct: 122 QIMMENIYDEVYSMMVDTFFNGPEK 146
>gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus
hirsutus]
Length = 249
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
TIET+PCVKKK DW LR IAD+ +F +V+AFA+VEGIFF+G A+IFWL+++G+MPGL
Sbjct: 57 TIETVPCVKKKKDWVLRRIADDRVTFPLKVVAFATVEGIFFAGGAAAIFWLQEKGVMPGL 116
Query: 244 TFSNELISRDEDL 256
T SNELI + E L
Sbjct: 117 TLSNELIRKGESL 129
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 43/51 (84%)
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
IVN+NLV+RF+QEVQ+ EAR F+GFQI+ +HSEMYS+LI++ IKD E+
Sbjct: 1 IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEK 51
>gi|448927042|gb|AGE50617.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CVA-1]
gi|448928726|gb|AGE52296.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus CVR-1]
Length = 326
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 87 VETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEI 139
+ EPLL D R++ FPI++ D++ MYKKA ++FWT EEV L++ + + + E
Sbjct: 4 INKEPLLADIGNRKYSAFPIKFPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDKLNDDER 63
Query: 140 RALKT--------------------GEEKASHSRNEPYLFRI----------KLAPGGIC 169
+KT E S Y +++ L +
Sbjct: 64 HFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALI 123
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
++ +TI P V KKA WA ++++ + SF ER++A+ VEG+ FSGSF
Sbjct: 124 EDDAERNSLFDAIETI---PAVGKKAAWAQKFLSQD-KSFAERLVAWVCVEGLLFSGSFC 179
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDLSH 258
+IFWL+ RG+MPGL SNE ISRDE L
Sbjct: 180 AIFWLRNRGVMPGLGLSNEFISRDEGLHQ 208
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDG 282
F F +F + K+ + T E + ++D++ W +KL DE++FI +L FFA SDG
Sbjct: 21 FPIKFPDVFAMYKKAVSTFWTV--EEVPLNQDIADWRDKLNDDERHFIKTILGFFAGSDG 78
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V EN+ F+ EV AR FY +Q+ E++HSEMYSLL+D I+D ER
Sbjct: 79 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAER 129
>gi|215275538|sp|P0C8I0.1|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 54/210 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL ++ +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P ++K A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIRKMAQWVQQWMDPVKNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +I +LK++ +MPGL NE ISRDE +
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDEGM 200
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>gi|17567153|ref|NP_508269.1| Protein F19G12.2 [Caenorhabditis elegans]
gi|351001563|emb|CCD69733.1| Protein F19G12.2 [Caenorhabditis elegans]
Length = 668
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 54/67 (80%)
Query: 185 IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
I T +K KADW LRWI+D + F ER+ AFA+VEGIFFS SFA+IFWLKKRGL+PGLT
Sbjct: 476 ITTFKFIKAKADWCLRWISDHNAPFSERLAAFAAVEGIFFSSSFAAIFWLKKRGLLPGLT 535
Query: 245 FSNELIS 251
SNELIS
Sbjct: 536 HSNELIS 542
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
IA+EN+HSEMY+ L++ YI+D ER
Sbjct: 445 IAVENIHSEMYAKLLEAYIRDDAER 469
>gi|448932723|gb|AGE56281.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus NE-JV-1]
Length = 325
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 103/208 (49%), Gaps = 47/208 (22%)
Query: 89 TEPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE 147
E LL DN ++ FPI++ D++ MYKKA ++FWT EEV L + + + R TG+E
Sbjct: 5 VESLLADNKSNKYSAFPIKHPDLFAMYKKAVSTFWTVEEVPLHQDIA---DWRDKLTGDE 61
Query: 148 KA------------------------SHSRNEP-----YLFRI----------KLAPGGI 168
+ S +P Y +++ L +
Sbjct: 62 RYFIKHVLGFFAGSDGIVMENIANNFSTEVTDPSARLFYAYQMFNESVHSEMYSLLLDAL 121
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
+ ++ +TI P V KKA WA+ +++ + SF ER++A+ VEG+ FSGSF
Sbjct: 122 VEDETERNSLFEAIETI---PAVGKKASWAINYLSPQ-KSFAERLVAWICVEGLLFSGSF 177
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFW + RGLMPGL SNE ISRDE L
Sbjct: 178 CAIFWFRNRGLMPGLGLSNEFISRDEGL 205
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D++ W +KLT DE+YFI HVL FFA SDGIV EN+ F+ EV AR FY
Sbjct: 42 EEVPLHQDIADWRDKLTGDERYFIKHVLGFFAGSDGIVMENIANNFSTEVTDPSARLFYA 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
+Q+ E+VHSEMYSLL+D ++D+ ER
Sbjct: 102 YQMFNESVHSEMYSLLLDALVEDETER 128
>gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
Length = 339
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 96/213 (45%), Gaps = 55/213 (25%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------------------- 131
R VI PIQ++ +W+ YK A W EEVDLS+
Sbjct: 7 RKVILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDWCTKLNERERFFIKHILAFFASA 66
Query: 132 ---VVVTNFEIRALKTGEEKASHSRNEPYLF---RIKLAPGGICRYKVKKGGKITGGKTI 185
V + + GE +A + ++ L ++ I Y + +
Sbjct: 67 DSIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLNAF 126
Query: 186 ETMPCVKKKADWALRWI----------------------ADEASSFGERVIAFASVEGIF 223
E + CV+KKA WAL+W AS R++AFA VEG+F
Sbjct: 127 EDVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFAIVEGVF 186
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSFA+IF++K +G+MPGLTFSNELISRDE L
Sbjct: 187 FSGSFAAIFFIKTKGIMPGLTFSNELISRDEGL 219
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + D W KL E++FI H+LAFFA++D IVN NL++ V EAR FY
Sbjct: 33 EEVDLSRDYEDWCTKLNERERFFIKHILAFFASADSIVNINLIDYVRDAVGELEARYFYD 92
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLI YIK+++E+
Sbjct: 93 QQILIENVHSEMYSLLIFEYIKNEKEQ 119
>gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
Length = 339
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 109/255 (42%), Gaps = 63/255 (24%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------------------- 131
R VI PIQ+ ++WK YK A W EEVDL+K
Sbjct: 7 RKVILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQNKLNEDERHFLKHILAFFASA 66
Query: 132 ---VVVTNFEIRALKTGEEKASHSRNEPYLF---RIKLAPGGICRYKVKKGGKITGGKTI 185
V + + K E +A + ++ ++ I Y + K T
Sbjct: 67 DSIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLNAF 126
Query: 186 ETMPCVKKKADWALRWI----------------------ADEASSFGERVIAFASVEGIF 223
+ CV+KKA WAL+W S R++AFA VEG+F
Sbjct: 127 NDIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFAIVEGVF 186
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGI 283
FSGSFA+IF++K +G+MPGLTFSNELISRDE L +Y H D +
Sbjct: 187 FSGSFAAIFYIKTKGVMPGLTFSNELISRDEGLHTNFACLYYNEYIPEH--------DKL 238
Query: 284 VNENLVERFTQEVQI 298
+E +++ F + V+I
Sbjct: 239 SSERILDMFIEAVEI 253
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W NKL DE++F+ H+LAFFA++D IVN NL++ +V EAR FY
Sbjct: 33 EEVDLTKDWEDWQNKLNEDERHFLKHILAFFASADSIVNINLIDYVRGKVAELEARYFYD 92
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLI YIKD++E+
Sbjct: 93 QQIFIENVHSEMYSLLIFEYIKDEQEK 119
>gi|365985840|ref|XP_003669752.1| hypothetical protein NDAI_0D01950 [Naumovozyma dairenensis CBS 421]
gi|343768521|emb|CCD24509.1| hypothetical protein NDAI_0D01950 [Naumovozyma dairenensis CBS 421]
Length = 352
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 31/203 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------- 133
++E + E LL +N RRFV+FPI+Y +IW YKK EA+FWTAEE++L K V
Sbjct: 25 MKETEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEAAFWTAEEIELEKDVKDFSKLNDD 84
Query: 134 VTNFEIRAL-----------KTGEEKASHSRNEP-----YLFRIKLAPGGICRYKVKKGG 177
F R L K EK S P Y F+I + Y +
Sbjct: 85 QKEFIARVLAYLTVSEDIINKHLVEKFSAELQNPEGKSLYGFQIMMENIYDEVYSMIVDA 144
Query: 178 KITGGKTIETMPCV------KKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
G + + V ++KA + RWI + S +GER++A ++ EGIFFSG +A++
Sbjct: 145 LYNGPENVPYFKQVPSTVQHQEKAAFIQRWIHNPDSLYGERLVALSAKEGIFFSGVYAAL 204
Query: 232 FWLKKRGLMPGLTFSNELISRDE 254
WL PG++ +N+ I RD+
Sbjct: 205 GWLGNTAGFPGISTANKFICRDK 227
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 56/78 (71%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I ++D+ ++KL D+K FI+ VLA+ S+ I+N++LVE+F+ E+Q E + YGF
Sbjct: 67 EEIELEKDVKDFSKLNDDQKEFIARVLAYLTVSEDIINKHLVEKFSAELQNPEGKSLYGF 126
Query: 308 QIAMENVHSEMYSLLIDT 325
QI MEN++ E+YS+++D
Sbjct: 127 QIMMENIYDEVYSMIVDA 144
>gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus]
Length = 181
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 55/70 (78%)
Query: 187 TMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFS 246
T P + +K WA +W+ E SF ER++AFA VEG+ FSGSFASIFWLKKRGLM GLTFS
Sbjct: 75 TTPGITEKTRWAKQWLERENLSFVERLVAFAVVEGLLFSGSFASIFWLKKRGLMHGLTFS 134
Query: 247 NELISRDEDL 256
NELISRDE L
Sbjct: 135 NELISRDEGL 144
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 269 FISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIK 328
F +LAFFA SDGIV ENLV RF + V TEAR FY FQ AMEN+H+E+YS LI T I
Sbjct: 2 FFKCILAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLIP 61
Query: 329 DQEER 333
+++E+
Sbjct: 62 NEDEQ 66
>gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera]
Length = 227
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 55/71 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D W LT DEK+FISH+LAFFAASDGIV ENL RF +EVQ+ EAR FYGF
Sbjct: 42 EEVDLSQDQRQWENLTSDEKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGF 101
Query: 308 QIAMENVHSEM 318
QIA+EN+HSE+
Sbjct: 102 QIAIENIHSEI 112
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
++ EPLL NP RF +FPIQY ++W+MYKKAEASFWTAEEVDLS+
Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQ 48
>gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1]
gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1]
Length = 419
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 48/214 (22%)
Query: 85 ENVETEPLLRDNPRRFVIF----PIQYQDIWKMYKKAEASFWTAEEVDLS---------- 130
E VE + ++ RF++F +Y D++++YKK A FW EE+DLS
Sbjct: 91 EIVEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDLSGDSKDWEDAS 150
Query: 131 -------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
K+V+ F E + +NE + +I+ + +++ + G
Sbjct: 151 SDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQ------HFAIQEATEAVHGE 204
Query: 183 --------------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
++I+TMP ++KKA WA +W+ E +S ER++ F +EG+
Sbjct: 205 SYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPETASLAERLVGFTCLEGV 264
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSF +I+WLKKR GL+F+N LI+RDE L
Sbjct: 265 QFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGL 298
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 222 IFFSG----SFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFF 277
I F+G +A +F L K+ L + E I D W + DEK+F+ VLAFF
Sbjct: 107 ILFNGKTEHEYADVFQLYKK--QTALFWVVEEIDLSGDSKDWEDASSDEKHFLKLVLAFF 164
Query: 278 AASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
A+ D IV EN+ F E+ I + R + Q A E VH E YSLLI TY +D EE+
Sbjct: 165 ASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLIQTYFRDTEEQ 220
>gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus]
Length = 419
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 48/214 (22%)
Query: 85 ENVETEPLLRDNPRRFVIF----PIQYQDIWKMYKKAEASFWTAEEVDLS---------- 130
E VE + ++ RF++F +Y D++++YKK A FW EE+D+S
Sbjct: 91 EIVEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDMSGDSKDWDDAS 150
Query: 131 -------KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG- 182
K+V+ F E + +NE + +I+ + +++ + G
Sbjct: 151 SDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQ------HFAIQEATEAVHGE 204
Query: 183 --------------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
++I+TMP ++KKA WA +W+ E +S ER++ F +EG+
Sbjct: 205 SYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPETASLAERLVGFTCLEGV 264
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSF +I+WLKKR GL+F+N LI+RDE L
Sbjct: 265 QFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGL 298
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 222 IFFSG----SFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFF 277
I F+G +A +F L K+ L + E I D W+ + DEK+F+ VLAFF
Sbjct: 107 ILFNGKTEHEYADVFQLYKK--QTALFWVVEEIDMSGDSKDWDDASSDEKHFLKLVLAFF 164
Query: 278 AASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
A+ D IV EN+ F E+ I + R + Q A E VH E YSLLI TY +D EE+
Sbjct: 165 ASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLIQTYFRDTEEQ 220
>gi|406707526|ref|YP_006757878.1| ribonucleotide reductase small subunit [alpha proteobacterium
HIMB59]
gi|406653302|gb|AFS48701.1| Ribonucleotide reductase, small chain [alpha proteobacterium
HIMB59]
Length = 329
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 33/187 (17%)
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KVVVTNFEIRALKT 144
IFPIQ+Q+IW YK+ +FWT EEV L K V+ F
Sbjct: 9 IFPIQHQEIWDRYKQHVQAFWTPEEVSLQDDLRDLKTLNEGEKHFIKHVLAFFANSEAMI 68
Query: 145 GEEKASHSRNEPYL---------------FRIKLAPGGICRYKVKKGGKITGGKTIETMP 189
E AS NE + ++ I Y K I+ +P
Sbjct: 69 NENLASRFYNEILIPESRLFITMQMLNESIHAEMYGLQIEAYVEDPAEKDKLFSAIQNVP 128
Query: 190 CVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 249
C+ KKA W +W+ + + R+IAF VEG+FF+GSF +I++ +KRGL+PGL SN+
Sbjct: 129 CINKKAQWVSKWL-NGKQNLLTRLIAFGLVEGLFFAGSFCAIYYFRKRGLLPGLALSNDW 187
Query: 250 ISRDEDL 256
I+RDE +
Sbjct: 188 IARDEGM 194
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E +S +DL L EK+FI HVLAFFA S+ ++NENL RF E+ I E+R F
Sbjct: 32 EEVSLQDDLRDLKTLNEGEKHFIKHVLAFFANSEAMINENLASRFYNEILIPESRLFITM 91
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ E++H+EMY L I+ Y++D E+
Sbjct: 92 QMLNESIHAEMYGLQIEAYVEDPAEK 117
>gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
Length = 318
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 73/103 (70%), Gaps = 9/103 (8%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK--KRGLMP 241
IE + VK+KA WA +WI + ++F ER++AFA VEG+FFSGSFA+I+++K K+G +P
Sbjct: 124 AIEHIDSVKRKATWAQKWIESQTATFAERMVAFAIVEGVFFSGSFAAIYYIKDTKKGALP 183
Query: 242 GLTFSNELISRDEDLS------HWNK-LTRDEKYFISHVLAFF 277
GLT+SNELISRDE L ++NK + +++K S VL F
Sbjct: 184 GLTYSNELISRDEGLHTDFACLYYNKYIAKEDKLSESKVLNMF 226
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D WN KL E++F+ HVLAFFAA+D IVN N++E V EA FY
Sbjct: 32 EEIDMSKDFDDWNNKLNDKERFFLKHVLAFFAAADVIVNTNIIEHMQSAVPEMEASFFYA 91
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
Q ++E VH+EMY++L+ YIKD +E
Sbjct: 92 QQTSIECVHTEMYNILVVEYIKDPQE 117
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
R +FPI +D+W+ YKKA W EE+D+SK
Sbjct: 6 RKTLFPIVNEDLWQSYKKALDCHWKVEEIDMSK 38
>gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a]
Length = 342
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 52/213 (24%)
Query: 89 TEPLLRDNPR--RFVIF----PIQYQDIWKMYKKAEASFWTAEEVDLSKVVV-------- 134
EP+ ++ RF++ ++ D++ +YKK A FWT EE+DL++ V
Sbjct: 16 CEPMCQEQGEFERFILLNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACWDKCSED 75
Query: 135 ------------------------TNF-------EIRALKTGEEKASHSRNEPYLFRIKL 163
NF +IR+ + E Y I+
Sbjct: 76 EQRFIGHILAFFASLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQ- 134
Query: 164 APGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y ++T ++I+ MP + KKA W W+ E +S ER++AF VEG+
Sbjct: 135 ------TYIKDPEKQVTMLRSIQEMPIITKKAQWVTAWMDPEVASLAERLVAFTCVEGVQ 188
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSG+F +I+WLKK+G GL F+N LI+RDE L
Sbjct: 189 FSGAFCAIYWLKKQGRFRGLCFANSLIARDEGL 221
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNEN 287
FA ++ L K+ + ++ E I +ED++ W+K + DE+ FI H+LAFFA+ D IV EN
Sbjct: 40 FADVYALYKKEI--ACFWTVEEIDLNEDVACWDKCSEDEQRFIGHILAFFASLDQIVMEN 97
Query: 288 LVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ F E++I + R + Q A+E++H E Y+LLI TYIKD E++
Sbjct: 98 VSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQ 143
>gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 318
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK--KRGLMP 241
IE + VK+KA WA +WI +++++F ER++AFA VEG+FFSGSFA+I+++K K+G +P
Sbjct: 124 AIEHIDSVKQKAAWAQKWIENQSATFAERMVAFAIVEGVFFSGSFAAIYYIKDSKKGALP 183
Query: 242 GLTFSNELISRDEDL 256
GLT+SNELISRDE L
Sbjct: 184 GLTYSNELISRDEGL 198
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWNKLTRD-EKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D WNK D E++F+ HVLAFFAA+D IVN N++E V EA FY
Sbjct: 32 EEIDMSKDFDDWNKKLNDKERFFLKHVLAFFAAADVIVNTNIIEHMQSAVPELEASFFYA 91
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
Q +E VH+EMY++L+ YIKD +E
Sbjct: 92 QQTFIECVHTEMYNILVVEYIKDPQE 117
>gi|356532684|ref|XP_003534901.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase small chain A-like [Glycine max]
Length = 248
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 81/169 (47%), Gaps = 39/169 (23%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE 147
E EP+L + +RF +FPI Y+ IW+MYKK EAS WT + +V F
Sbjct: 19 EQEPILMEQSQRFCMFPICYKQIWEMYKKVEASLWTNCSDNSIEVYGPFF---------- 68
Query: 148 KASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEAS 207
+ EP LF K+ + Y K IET+PCV KKA+WA WI +
Sbjct: 69 ---FGQCEP-LF--KMYSLLLETYIKDSREKYKLFNAIETLPCVAKKAEWAFSWIHN--- 119
Query: 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +IFWLKK+GLMP LTF NELI RDE L
Sbjct: 120 --------------------FCAIFWLKKKGLMPVLTFLNELIFRDEGL 148
>gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ectropis obliqua NPV]
gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ectropis obliqua NPV]
Length = 341
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 95/214 (44%), Gaps = 56/214 (26%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK---------VVVTNFEIRALKTGEEKA 149
R VI PI+ Q++W+M K A W EE DLS+ V F ++ + A
Sbjct: 8 RKVILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWRHKLCVQERFFLKHILAFFASA 67
Query: 150 SHSRNEPYLFRIKLA-PGGICRYKVKKGGKITGGKT-----------------------I 185
N + ++ A P RY + I +
Sbjct: 68 DTIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNSEERNKLLNAF 127
Query: 186 ETMPCVKKKADWALRWIADE-----------------------ASSFGERVIAFASVEGI 222
+ + C+KKKA WAL+W + S R+IAFA VEGI
Sbjct: 128 DRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFAIVEGI 187
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FFSGSFA+IF++K +GLMPGLTFSNELISRDE L
Sbjct: 188 FFSGSFAAIFFIKTKGLMPGLTFSNELISRDEGL 221
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Query: 250 ISRD-EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
+SRD +D H KL E++F+ H+LAFFA++D IVN NL++ V EAR FY Q
Sbjct: 38 LSRDFDDWRH--KLCVQERFFLKHILAFFASADTIVNINLIDYVRAAVPELEARYFYDQQ 95
Query: 309 IAMENVHSEMYSLLIDTYIKDQEER 333
I +ENVHSEMYSLL+ YIK+ EER
Sbjct: 96 ILIENVHSEMYSLLVFEYIKNSEER 120
>gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species
virus]
gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species
virus]
Length = 342
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 52/212 (24%)
Query: 90 EPLLRDNPR--RFVIF----PIQYQDIWKMYKKAEASFWTAEEVD--------------- 128
EP+ ++ RF++F +Y D++ +YKK A FWT EE+D
Sbjct: 17 EPMCHEDSEFDRFILFNQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECWDKSSSDE 76
Query: 129 -------------LSKVVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLA 164
L ++V+ N ++R+ + E Y I+
Sbjct: 77 QHFIIHILAFFASLDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILIQTY 136
Query: 165 PGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
++ KI ++++ MP ++KKA W W+ E S ER++AF VEG+ F
Sbjct: 137 VKN-----SQQQSKIL--RSVQEMPIIRKKAQWVTSWMDPETCSLAERLVAFTCVEGVQF 189
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SG+F +I+WLKK+G GL F+N LI+RDE L
Sbjct: 190 SGAFCAIYWLKKQGRFRGLCFANSLIARDEGL 221
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNEN 287
+A ++ L K+ + ++ E + ED+ W+K + DE++FI H+LAFFA+ D IV EN
Sbjct: 40 YADVYALYKKEI--ACFWTVEEMDLSEDVECWDKSSSDEQHFIIHILAFFASLDQIVMEN 97
Query: 288 LVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ F E+ I + R + Q A+E++H E YS+LI TY+K+ +++
Sbjct: 98 VSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILIQTYVKNSQQQ 143
>gi|20809684|gb|AAH28932.1| Similar to ribonucleotide reductase protein r2 class I, partial
[Homo sapiens]
Length = 172
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/50 (88%), Positives = 49/50 (98%)
Query: 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 2 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 51
>gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500]
Length = 1292
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 255 DLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
D+ W KL +E+Y IS++L FF + GI+NEN++ F EVQI EAR FY QIAMEN
Sbjct: 63 DVRDWQCKLDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQIAMEN 122
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+ SE YSLLID YIKD +E+
Sbjct: 123 IQSEKYSLLIDAYIKDTDEK 142
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 185 IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
IE++PCVK+K +W L+ + + + S ER+IAFA+VE I +S SF I W KR LMP L+
Sbjct: 149 IESIPCVKRKCEWLLKSM-NNSKSLAERLIAFAAVESILYSASFCVILWFHKRSLMPKLS 207
>gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii]
Length = 309
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 38/194 (19%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------------------- 131
R+V PI+ D++ M+KK FWT +E++++
Sbjct: 3 RYVTPPIKNLDLYDMWKKHVRCFWTKDEINITSSDLREWNDLTPDERQFFKCILGFFAST 62
Query: 132 --VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKKGGKITGG 182
+V N +R L + S Y F+I + + Y ++ +
Sbjct: 63 NIIVSDNLALRFL--ADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNELL 120
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+I + PC+ K+ WA++W+ DE +++ ER++AFA VEGI FS SFA I+W+K+ GL+ G
Sbjct: 121 YSIISWPCLNVKSRWAVKWMNDEFATYAERLVAFAVVEGIMFSSSFAGIYWIKQSGLLAG 180
Query: 243 LTFSNELISRDEDL 256
LT +NE ISRDE L
Sbjct: 181 LTQANEFISRDEGL 194
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQIT-EARCFYGFQIAMEN 313
DL WN LT DE+ F +L FFA+++ IV++NL RF + I+ EARCFY FQIAMEN
Sbjct: 37 DLREWNDLTPDERQFFKCILGFFASTNIIVSDNLALRFLADPNISREARCFYSFQIAMEN 96
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSE Y L+ Y+ +++ER
Sbjct: 97 IHSETYIELLTAYVPEEKER 116
>gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
Length = 257
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 89/176 (50%), Gaps = 37/176 (21%)
Query: 109 DIWKMYKKAEASFWTAEEVDLS------KVVVTNFE------IRALKTGEEKASHSRNEP 156
DIWKMYKK A+ W EE++ S + +TN E + A +
Sbjct: 86 DIWKMYKKTLANQWVVEEIESSDDGLDWEKKLTNDERDFFSNVLAFFVASCGIINKNLNR 145
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGKT---------------------IETMPCVKKKA 195
++ ++++ P C Y + K +T IET+PCVKKKA
Sbjct: 146 FMSKVQI-PEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKLFNAIETIPCVKKKA 204
Query: 196 DWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 251
+WAL+WI + SF +R++A + E IFFSGSF I LKKR LM GLTFSNELI+
Sbjct: 205 EWALKWINE---SFEKRLVALVAFESIFFSGSFRIISLLKKRSLMQGLTFSNELIN 257
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E+ S D+ L KLT DE+ F S+VLAFF AS GI+N+NL RF +VQI EA+CFY +
Sbjct: 103 EIESSDDGLDWEKKLTNDERDFFSNVLAFFVASCGIINKNL-NRFMSKVQIPEAKCFYNY 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQ 330
QI ++ +HSE YSLLI+T IKD+
Sbjct: 162 QIHIKYLHSETYSLLIETCIKDK 184
>gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi]
gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi]
Length = 330
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 31/210 (14%)
Query: 76 LKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS-FWTAEEVD------ 128
+ ++ + +++ ++E +L +NP RF +FPIQY +W++YKK AS W+ E+ D
Sbjct: 1 MNELHSQLKQLEKSEEILSENPHRFTLFPIQYPKLWEIYKKRLASSIWSVEQFDQIIRND 60
Query: 129 ---LSKV--------------VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGI--- 168
LS++ +V N + + G K + +LA I
Sbjct: 61 ISKLSEICNSDHSFIKIILAFLVANCKQKTNLWGAFKDIQILEAKHFHGFRLAMKNIHYE 120
Query: 169 --CRYKVKKGGKITGGKTIETM-PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225
C + + IE M KK+ + +W+ + + F ER+I +E IF S
Sbjct: 121 MYCNLFEILTEETERSELIEKMINSTMKKSQYTKKWLNSD-NLFSERLIGLVCIEQIFLS 179
Query: 226 GSFASIFWLKKRGLMPGLTFSNELISRDED 255
SF SIFWLKKRGLM LT SN+LI RDE+
Sbjct: 180 ASFFSIFWLKKRGLMSALTISNDLIFRDEE 209
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D+S +++ + FI +LAF A + NL F +++QI EA+ F+GF++AM+N+
Sbjct: 60 DISKLSEICNSDHSFIKIILAFLVA-NCKQKTNLWGAF-KDIQILEAKHFHGFRLAMKNI 117
Query: 315 HSEMYSLLIDTYIKDQE 331
H EMY L + ++ E
Sbjct: 118 HYEMYCNLFEILTEETE 134
>gi|47200896|emb|CAF87761.1| unnamed protein product [Tetraodon nigroviridis]
Length = 441
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/45 (88%), Positives = 43/45 (95%)
Query: 289 VERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
VERFTQEVQ+TEARCFYGFQIAMEN+HSEMYSLLIDTYIK+ ER
Sbjct: 234 VERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSER 278
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 184 TIETMPCVKKKADWALRWIADEASS 208
IET+PCVKKKADWAL WI ++ +S
Sbjct: 284 AIETLPCVKKKADWALNWIGNQKAS 308
>gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana]
Length = 231
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W N LT DE++FI HVLAFFAASDGIV ENL RF +VQI+EAR FYG
Sbjct: 42 EEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYG 101
Query: 307 FQIAMENVHSEM 318
FQIA+EN+HSE+
Sbjct: 102 FQIAIENIHSEI 113
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 35/42 (83%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EP+L P RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 7 EPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQ 48
>gi|371944843|gb|AEX62664.1| ribonucleoside-diphosphate reductase small chain [Moumouvirus
Monve]
Length = 236
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 248 ELISRDEDLSHWNKL-TRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D+S WN L + +++ FI HVLAFFA++DGIVN N+ E V+I EA C YG
Sbjct: 117 EEVDLSKDVSDWNNLLSENDRIFIMHVLAFFASADGIVNANIKENLIDVVKIKEAECAYG 176
Query: 307 FQIAMENVHSEMYSLLIDTYIKD 329
Q MEN H EMYSL++DT++KD
Sbjct: 177 KQFEMENAHGEMYSLMLDTFVKD 199
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
EP+L R+ ++PIQY ++WK YK W EEVDLSK V
Sbjct: 82 EPILSTASERYTVYPIQYNNVWKNYKDQLKINWVVEEVDLSKDV 125
>gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
Length = 184
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 48/56 (85%), Gaps = 1/56 (1%)
Query: 255 DLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
DL WN ++ +E++FISHVLAFFAASDGIVNENLVERF+ EVQ EARCFYGFQI
Sbjct: 129 DLHDWNNRMNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQI 184
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 49 PQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQ 108
P + L D T ++ D K + + P E EPLL+++ RRFV+FPIQY
Sbjct: 50 PASLLDDETEEQEEKGAEDLEELRKQFVGDIELPESE----EPLLKESKRRFVLFPIQYP 105
Query: 109 DIWKMYKKAEASFWTAEEVDLSK 131
+IW+MYKKAEASFWTAEE+DLSK
Sbjct: 106 EIWQMYKKAEASFWTAEEMDLSK 128
>gi|448929830|gb|AGE53396.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus GM0701.1]
Length = 325
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V KKA WA ++ + + SF ER++A+ VEG+ FSGSF +IFWL+ RGLMPG
Sbjct: 133 EAIETIPAVGKKAAWAAKYFSRD-RSFAERLVAWVCVEGLLFSGSFCAIFWLRNRGLMPG 191
Query: 243 LTFSNELISRDEDLSH 258
L SNE ISRDE L
Sbjct: 192 LGLSNEFISRDEGLHQ 207
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDG 282
F + IF + K+ + T E + ++D+ W KL DE++FI H+L FFA SDG
Sbjct: 20 FPIRYPDIFQMYKKAVATFWTV--EEVQLNQDVVDWREKLNDDERHFIKHILGFFAGSDG 77
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V ENL F +EV AR FY +Q E+VHSE YSLL+D I+D+ ER
Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQAFNESVHSEQYSLLLDALIEDETER 128
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 90 EPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EPLL + R++ FPI+Y DI++MYKKA A+FWT EEV L++ VV
Sbjct: 6 EPLLANIGARKYSAFPIRYPDIFQMYKKAVATFWTVEEVQLNQDVV 51
>gi|448936080|gb|AGE59628.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus TN603.4.2]
Length = 325
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V KKA WA ++ + + SF ER++A+ VEG+ FSGSF +IFWL+ RGLMPG
Sbjct: 133 EAIETIPAVGKKAAWAAKYFSRD-RSFAERLVAWVCVEGLLFSGSFCAIFWLRNRGLMPG 191
Query: 243 LTFSNELISRDEDLSH 258
L SNE ISRDE L
Sbjct: 192 LGLSNEFISRDEGLHQ 207
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDG 282
F + IF + K+ + T E + ++D+ W KL DE++FI H+L FFA SDG
Sbjct: 20 FPIRYPDIFQMYKKAVATFWTV--EEVQLNQDVVDWREKLNDDERHFIKHILGFFAGSDG 77
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V ENL F +EV AR FY +Q E+VHSE YSLL+D I+D+ ER
Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQAFNESVHSEQYSLLLDALIEDETER 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 90 EPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EPLL D R++ FPI+Y DI++MYKKA A+FWT EEV L++ VV
Sbjct: 6 EPLLADIGARKYSAFPIRYPDIFQMYKKAVATFWTVEEVQLNQDVV 51
>gi|440635227|gb|ELR05146.1| hypothetical protein GMDG_07188 [Geomyces destructans 20631-21]
Length = 132
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 49/56 (87%)
Query: 201 WIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
WI D+ S+F +R++AFA+VEGIFFSGSFASIFWL KRGLM GLTFSNELIS +E L
Sbjct: 66 WIQDKDSTFAQRLVAFAAVEGIFFSGSFASIFWLNKRGLMAGLTFSNELISHNEGL 121
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 303 CFYGFQIAMENVHSEMYSLLIDTYIKD 329
FYGFQI +EN+H+E Y LLIDTYIK+
Sbjct: 39 VFYGFQIMIENIHAETYFLLIDTYIKE 65
>gi|448926466|gb|AGE50042.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus Canal-1]
Length = 325
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V KKA WA ++ + + SF ER++A+ VEG+ FSGSF +IFWL+ RGLMPG
Sbjct: 133 EAIETIPAVGKKAAWASKYFSRD-RSFAERLVAWVCVEGLLFSGSFCAIFWLRNRGLMPG 191
Query: 243 LTFSNELISRDEDL 256
L SNE ISRDE L
Sbjct: 192 LGLSNEFISRDEGL 205
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDG 282
F + IF + K+ + T E + ++D+ W KL DE++FI H+L FFA SDG
Sbjct: 20 FPIRYPDIFQMYKKAVATFWTV--EEVQLNQDVVDWREKLNDDERHFIKHILGFFAGSDG 77
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V ENL F +EV AR FY +Q E+VHSE YSLL+D I+D++ER
Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQAFNESVHSEQYSLLLDALIEDEDER 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 90 EPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EPLL D R++ FPI+Y DI++MYKKA A+FWT EEV L++ VV
Sbjct: 6 EPLLADIGARKYSAFPIRYPDIFQMYKKAVATFWTVEEVQLNQDVV 51
>gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
virus 1]
gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
virus 1]
gi|448925781|gb|AGE49359.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus Can0610SP]
gi|448932290|gb|AGE55849.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus MO0605SPH]
gi|448932944|gb|AGE56501.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus NE-JV-2]
gi|448933285|gb|AGE56841.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus NE-JV-3]
gi|448933961|gb|AGE57515.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus NTS-1]
gi|448935746|gb|AGE59295.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus OR0704.3]
gi|448936417|gb|AGE59964.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus WI0606]
Length = 325
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V KKA WA ++ + + SF ER++A+ VEG+ FSGSF +IFWL+ RGLMPG
Sbjct: 133 EAIETIPAVGKKAAWASKYFSRD-RSFAERLVAWVCVEGLLFSGSFCAIFWLRNRGLMPG 191
Query: 243 LTFSNELISRDEDL 256
L SNE ISRDE L
Sbjct: 192 LGLSNEFISRDEGL 205
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDG 282
F + IF + K+ + T E + ++D+ W KL DE++FI H+L FFA SDG
Sbjct: 20 FPIRYPDIFQMYKKAVATFWTV--EEVQLNQDVVDWREKLNDDERHFIKHILGFFAGSDG 77
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V ENL F +EV AR FY +Q E+VHSE YSLL+D I+D+ ER
Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETER 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 89 TEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EPLL D R++ FPI+Y DI++MYKKA A+FWT EEV L++ VV
Sbjct: 5 VEPLLADIGARKYSAFPIRYPDIFQMYKKAVATFWTVEEVQLNQDVV 51
>gi|448925447|gb|AGE49026.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus Br0604L]
Length = 325
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V KKA WA ++ + + SF ER++A+ VEG+ FSGSF +IFWL+ RGLMPG
Sbjct: 133 EAIETIPAVGKKAAWASKYFSRD-RSFAERLVAWVCVEGLLFSGSFCAIFWLRNRGLMPG 191
Query: 243 LTFSNELISRDEDLSH 258
L SNE ISRDE L
Sbjct: 192 LGLSNEFISRDEGLHQ 207
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDG 282
F + IF + K+ + T E + ++D+ W KL DE++FI H+L FFA SDG
Sbjct: 20 FPIRYPDIFQMYKKAVATFWTV--EEVQLNQDVVDWREKLNDDERHFIKHILGFFAGSDG 77
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V ENL F +EV AR FY +Q E+VHSE YSLL+D I+D+ ER
Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQAFNESVHSEQYSLLLDALIEDETER 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 90 EPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EPLL D R++ FPI+Y DI++MYKKA A+FWT EEV L++ VV
Sbjct: 6 EPLLADIGARKYSAFPIRYPDIFQMYKKAVATFWTVEEVQLNQDVV 51
>gi|410078754|ref|XP_003956958.1| hypothetical protein KAFR_0D01760 [Kazachstania africana CBS 2517]
gi|372463543|emb|CCF57823.1| hypothetical protein KAFR_0D01760 [Kazachstania africana CBS 2517]
Length = 346
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 98/211 (46%), Gaps = 31/211 (14%)
Query: 74 STLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
S + + ++E + E LL +N RRFV+FPI+Y +IW YKK EA+FW AEEVDL+K V
Sbjct: 10 SQFAEQRSALREAEKDEILLIENKRRFVMFPIKYHEIWAAYKKLEATFWPAEEVDLTKDV 69
Query: 134 ---------VTNFEIR---ALKTGE--------EKASHSRNEP-----YLFRIKL----- 163
+F R A TGE E+ S P Y F+I
Sbjct: 70 DDFKKLNEDQKDFFARYLAAATTGEANLVNHLIERFSAELQNPEGKSFYGFQIMAQNVYD 129
Query: 164 -APGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
A + K+ T V K ++ WI S +GER++A A+ E +
Sbjct: 130 EAHSMMIDTFFDGAEKVKYLNEFPTSKEVTAKLNFRKEWIESPESLYGERLVALAAKEAL 189
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
F +G+ A IFW +GL G+T I+RD
Sbjct: 190 FLAGARAVIFWFISQGLFHGVTHGISNITRD 220
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVN--ENLVERFTQEVQITEARCFY 305
E + +D+ + KL D+K F + LA AA+ G N +L+ERF+ E+Q E + FY
Sbjct: 61 EEVDLTKDVDDFKKLNEDQKDFFARYLA--AATTGEANLVNHLIERFSAELQNPEGKSFY 118
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
GFQI +NV+ E +S++IDT+ E+
Sbjct: 119 GFQIMAQNVYDEAHSMMIDTFFDGAEK 145
>gi|448931953|gb|AGE55513.1| ribonucleoside-diphosphate reductase small subunit [Acanthocystis
turfacea Chlorella virus MN0810.1]
Length = 325
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+ IET+P V KKA WA ++ + + SF ER++A+ VEG+ FSGSF +IFWL+ RG+MPG
Sbjct: 133 EAIETIPAVGKKAAWAAKYFSRD-RSFAERLVAWVCVEGLLFSGSFCAIFWLRNRGIMPG 191
Query: 243 LTFSNELISRDEDLSH 258
L SNE ISRDE L
Sbjct: 192 LGLSNEFISRDEGLHQ 207
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDG 282
F + IF + K+ + T E + ++D+ W KL DE++FI H+L FFA SDG
Sbjct: 20 FPIRYPDIFQMYKKAVATFWTV--EEVQLNQDVVDWREKLNDDERHFIKHILGFFAGSDG 77
Query: 283 IVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+V ENL F +EV AR FY +Q E+VHSE YSLL+D I+D+ ER
Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQAFNESVHSEQYSLLLDALIEDEAER 128
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 89 TEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
TEPLL D R++ FPI+Y DI++MYKKA A+FWT EEV L++ VV
Sbjct: 5 TEPLLADIGARKYSAFPIRYPDIFQMYKKAVATFWTVEEVQLNQDVV 51
>gi|448931455|gb|AGE55017.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus MA-1D]
gi|448934897|gb|AGE58449.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus NY-2B]
gi|448935281|gb|AGE58832.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus NYs1]
Length = 324
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IFWL+ +G+MPGL
Sbjct: 133 AIENIPAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIFWLRNKGVMPGL 191
Query: 244 TFSNELISRDEDLSH 258
SNE ISRDE L
Sbjct: 192 CLSNEFISRDEGLHQ 206
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 39 TTEEVPLNADVVDWREKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I D++ER
Sbjct: 99 YAYQTFNESIHSEQYALLIDALISDEQER 127
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 5 EPILSDNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVV 50
>gi|356519286|ref|XP_003528304.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase small chain-like [Glycine max]
Length = 186
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 56/72 (77%)
Query: 262 LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321
L+ E +FI+ VLAFFAAS+ IV ENLV FT+E+Q+ EAR FYGFQ +EN+HSE+YSL
Sbjct: 6 LSDGEHHFITLVLAFFAASNDIVLENLVGHFTKEIQLPEARAFYGFQFGIENIHSEIYSL 65
Query: 322 LIDTYIKDQEER 333
L++T KD E+
Sbjct: 66 LLETXTKDSTEK 77
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
+TI T+ + KK+ WAL WI D + SF ER++AFA +EGIFFSGS+ IFWL+K LM G
Sbjct: 82 RTINTILRITKKSQWALCWI-DASKSFMERLVAFACIEGIFFSGSYCVIFWLEKCELM-G 139
Query: 243 LTFSNELISRDEDL 256
LTFSNELIS DE L
Sbjct: 140 LTFSNELISXDEGL 153
>gi|448925009|gb|AGE48590.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus AN69C]
gi|448930394|gb|AGE53959.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus IL-3A]
gi|448933837|gb|AGE57392.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus NE-JV-4]
Length = 333
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IFWL+ +G+MPGL
Sbjct: 142 AIENIPAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIFWLRNKGVMPGL 200
Query: 244 TFSNELISRDEDLSH 258
SNE ISRDE L
Sbjct: 201 GLSNEFISRDEGLHQ 215
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 48 TTEEVPLNADVVDWREKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 107
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I D++ER
Sbjct: 108 YAYQTFNESIHSEQYALLIDALISDEQER 136
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 87 VETEPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
V EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 11 VNQEPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVV 59
>gi|9632043|ref|NP_048832.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
gi|1620147|gb|AAC96843.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
Length = 324
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IFWL+ +G+MPGL
Sbjct: 133 AIENIPAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIFWLRNKGVMPGL 191
Query: 244 TFSNELISRDEDLSH 258
SNE ISRDE L
Sbjct: 192 GLSNEFISRDEGLHQ 206
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 39 TTEEVPLNADVVDWREKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I D++ER
Sbjct: 99 YAYQTFNESIHSEQYALLIDALISDEQER 127
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 5 EPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVV 50
>gi|448931089|gb|AGE54652.1| ribonucleoside-diphosphate reductase small subunit [Paramecium
bursaria Chlorella virus KS1B]
Length = 324
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IFWL+ +G+MPGL
Sbjct: 133 AIENIPAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIFWLRNKGVMPGL 191
Query: 244 TFSNELISRDEDLSH 258
SNE ISRDE L
Sbjct: 192 GLSNEFISRDEGLHQ 206
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 39 TTEEVPLNADVVDWREKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I D++ER
Sbjct: 99 YAYQTFNESIHSEQYALLIDALISDEQER 127
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 5 EPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVV 50
>gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
virus AR158]
gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
virus AR158]
Length = 324
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IE +P V KA WA +W+ + SF ER++A+ VEGI FSGSF +IFWL+ +G+MPGL
Sbjct: 133 AIENIPAVHNKAKWAQKWL-EPGKSFAERLVAWVCVEGILFSGSFCAIFWLRNKGVMPGL 191
Query: 244 TFSNELISRDEDLSH 258
SNE ISRDE L
Sbjct: 192 GLSNEFISRDEGLHQ 206
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 246 SNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
+ E + + D+ W KL DE++FI H+L FFA SDGIV ENL F+ EV + EAR F
Sbjct: 39 TTEEVPLNADVVDWREKLNDDERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQF 98
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
Y +Q E++HSE Y+LLID I D++ER
Sbjct: 99 YAYQTFNESIHSEQYALLIDALISDEQER 127
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 90 EPLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVV 134
EP+L DN R+F FPIQY D+W MYKKA A+FWT EEV L+ VV
Sbjct: 5 EPILSDNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVV 50
>gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative
[Perkinsus marinus ATCC 50983]
gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative
[Perkinsus marinus ATCC 50983]
Length = 82
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 52/70 (74%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +DL W LT++E++FI +VLAFFAASDGIV ENL +F+ EVQI EAR FYGF
Sbjct: 12 EEIDLGQDLRDWETLTKNEQHFIKNVLAFFAASDGIVMENLASKFSCEVQIPEARAFYGF 71
Query: 308 QIAMENVHSE 317
Q ME +HSE
Sbjct: 72 QTGMETIHSE 81
>gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 134
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAM 311
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIAM
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAM 124
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMT 66
>gi|356498513|ref|XP_003518095.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase small chain-like [Glycine max]
Length = 165
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +DL + LT E + ++ VLAFF ASD IV ENL++ FTQE+ + EA FY QI
Sbjct: 32 VDLSQDLHCXDSLTDGEHHLVTCVLAFFTASDDIVLENLIKHFTQEIHLPEAHTFYX-QI 90
Query: 310 AMENVHSEMYSLLIDTYIKDQEER 333
A+EN+H EMYSLL++TYIKD +++
Sbjct: 91 AIENIHFEMYSLLLETYIKDSDQK 114
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
TI+T+PCV K A WALRWI+ + R I S E +F
Sbjct: 120 TIDTIPCVTKXAQWALRWISIIRGALT-RTIKIQSEEKLF 158
>gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 130
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAM 311
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYGFQIAM
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAM 124
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMT 66
>gi|367007080|ref|XP_003688270.1| hypothetical protein TPHA_0N00550 [Tetrapisispora phaffii CBS 4417]
gi|357526578|emb|CCE65836.1| hypothetical protein TPHA_0N00550 [Tetrapisispora phaffii CBS 4417]
Length = 360
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 44/254 (17%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS------------ 130
+ E + E +L +N RRFV+FPI++ +I+ YKK EA FWTAEE+DL
Sbjct: 32 ILERQKDETILFENKRRFVLFPIRFHEIFDAYKKREALFWTAEEIDLKQDCVDWEDKLGD 91
Query: 131 ------KVVVTNFEIRALKTGE--EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGG 177
K V+ F L + E S P Y F+I + Y +
Sbjct: 92 KEKHSMKRVLAVFAASVLSELKLTETLSAEVQTPEAKCFYGFQIMVDNVHEEVYSLVIDS 151
Query: 178 KITGGKTIETM-------PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
+T +E M ++K +A RW + FGE+++AFA+++ +F S+AS
Sbjct: 152 FVTNKDELEVMFDGIEEDEISQEKIAFAKRWFDVSNALFGEKLVAFAAIQSLFSLNSYAS 211
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVE 290
+F ++KR L+PGL+ +N + +D + R E F+ F +N+ +V+
Sbjct: 212 LFSMQKRRLLPGLSKANVTMFKDHSI-------RTEFQFL-----MFNHLKNKINKEIVQ 259
Query: 291 RFTQEVQITEARCF 304
R E E R
Sbjct: 260 RIVIEAVNIEKRAL 273
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 20/166 (12%)
Query: 179 ITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS---------FA 229
+TG K ET V K+ + R ++ S ++ E I F F
Sbjct: 1 MTGDKNFET---VLKELEAKHREFLNKHSEHRHEILERQKDETILFENKRRFVLFPIRFH 57
Query: 230 SIF-WLKKRGLMPGLTFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNE- 286
IF KKR L ++ E I +D W +KL EK+ + VLA FAAS +++E
Sbjct: 58 EIFDAYKKR---EALFWTAEEIDLKQDCVDWEDKLGDKEKHSMKRVLAVFAAS--VLSEL 112
Query: 287 NLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEE 332
L E + EVQ EA+CFYGFQI ++NVH E+YSL+ID+++ +++E
Sbjct: 113 KLTETLSAEVQTPEAKCFYGFQIMVDNVHEEVYSLVIDSFVTNKDE 158
>gi|367002223|ref|XP_003685846.1| hypothetical protein TPHA_0E03220 [Tetrapisispora phaffii CBS 4417]
gi|357524145|emb|CCE63412.1| hypothetical protein TPHA_0E03220 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 35/208 (16%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRAL 142
++E+ + E +L +N RRFV+FPI+Y +++ YK+ EA FWTAEE+D +K + NF +
Sbjct: 18 LKESQKDEVILIENHRRFVLFPIKYHEVYDAYKQREALFWTAEELDFTK-DIENFNGEEI 76
Query: 143 KTGEEK---------ASHSRNEPYLFRIKLA----PGGICRYKVK--------------- 174
E++ AS+ ++ L A P C Y +
Sbjct: 77 SEDEKEYITRLLALFASNDMDKLNLTENLSAEVQIPEAKCFYGFQIMLDNIHQEVYSLII 136
Query: 175 ------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
G +++ ++ + + K ++A W +E FGE++IAFA+V+GIF ++
Sbjct: 137 DAIIKDNGKRVSMFDDLKKLSNINDKLEYAKTWFENEDHLFGEKLIAFAAVQGIFSLAAY 196
Query: 229 ASIFWLKKRGLMPGLTFSNELISRDEDL 256
ASIF K L PGL + + RD L
Sbjct: 197 ASIFSPKGGKLFPGLQKGVQNMFRDRAL 224
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
Query: 254 EDLSHWN--KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAM 311
+D+ ++N +++ DEK +I+ +LA FA++D + NL E + EVQI EA+CFYGFQI +
Sbjct: 66 KDIENFNGEEISEDEKEYITRLLALFASND-MDKLNLTENLSAEVQIPEAKCFYGFQIML 124
Query: 312 ENVHSEMYSLLIDTYIKDQEER 333
+N+H E+YSL+ID IKD +R
Sbjct: 125 DNIHQEVYSLIIDAIIKDNGKR 146
>gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
70294]
gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
70294]
Length = 351
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 33/200 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------VTNFE---- 138
E +L +N RRFV+FPI+Y +I+ YKK EA FWTAEE+D SK + +T E
Sbjct: 26 ESILTENKRRFVLFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNWNDDKITKDEKEYF 85
Query: 139 IRAL----------KTGEEKASHSRNEP-----YLFRIKL------APGGICRYKVKKGG 177
IR L + E S P Y F+I + G + VK
Sbjct: 86 IRLLALFASNDMDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVKDDE 145
Query: 178 KITGG-KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K T + I+ + +K+K ++A W +E + FGE++IA A+V GIF ++ S+ +K
Sbjct: 146 KRTSMFEEIKDLTNIKEKIEYAKSWFENEDNLFGEKLIAEAAVLGIFSLSAYVSVLSFQK 205
Query: 237 RGLMPGLTFSNELISRDEDL 256
GL+PG + + RD L
Sbjct: 206 GGLIPGFVTGVDNMLRDRGL 225
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Query: 235 KKRGLMPGLTFSNELISRDEDLSHWN--KLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
KKR L ++ E + +D+ +WN K+T+DEK + +LA FA++D + ENL E
Sbjct: 51 KKR---EALFWTAEELDFSKDIQNWNDDKITKDEKEYFIRLLALFASND-MDRENLTEHL 106
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ E Q EA+CFYGFQI ++N+H E+Y +LID+ +KD E+R
Sbjct: 107 SAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVKDDEKR 147
>gi|444322762|ref|XP_004182022.1| hypothetical protein TBLA_0H02170 [Tetrapisispora blattae CBS 6284]
gi|387515068|emb|CCH62503.1| hypothetical protein TBLA_0H02170 [Tetrapisispora blattae CBS 6284]
Length = 352
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 4/89 (4%)
Query: 248 ELISRDEDLSHWNK---LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCF 304
E + +D+ WN +T+D+K FI+ +LA F + D +++NL E + EVQI EA+CF
Sbjct: 60 EEMDSSKDIEQWNSEGAITKDQKEFITRLLAVFMSQD-FIDQNLTELLSAEVQIPEAKCF 118
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
YGFQI ++N+H+E+YSL ID IKD++ R
Sbjct: 119 YGFQIMVDNIHAEVYSLAIDALIKDEKTR 147
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV--------- 133
++E + E +L +N RRFV+FPI+Y +++ YKK EA+FWTAEE+D SK +
Sbjct: 18 LKEMEKDEAILFENKRRFVLFPIKYHEVYDAYKKREANFWTAEEMDSSKDIEQWNSEGAI 77
Query: 134 ---VTNFEIRALKTGEEKASHSRNEPYLFRIKLA-PGGICRYKVK--------------- 174
F R L + +N L ++ P C Y +
Sbjct: 78 TKDQKEFITRLLAVFMSQDFIDQNLTELLSAEVQIPEAKCFYGFQIMVDNIHAEVYSLAI 137
Query: 175 ------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSF 228
+ ++T ++IE +K K + W E S + E+++AFA+++G+F +
Sbjct: 138 DALIKDEKTRVTMFESIEDNSNIKAKMAYNETWFG-EDSLYAEKLVAFAALQGLFNLTGY 196
Query: 229 ASIFWLKKRGLMPGLTFSNELISRD 253
S F+L+ + ++PG N + +D
Sbjct: 197 VSAFYLQSKDILPGFNKMNVEMFKD 221
>gi|225434341|ref|XP_002276454.1| PREDICTED: uncharacterized protein LOC100256951 [Vitis vinifera]
Length = 841
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 45/51 (88%)
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
++ F ER+IAFA VEGIFFSGSF +IFWLKK+GLMPGLTFSNELISR E L
Sbjct: 667 STLFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGL 717
>gi|297745764|emb|CBI15820.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 45/51 (88%)
Query: 206 ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
++ F ER+IAFA VEGIFFSGSF +IFWLKK+GLMPGLTFSNELISR E L
Sbjct: 95 STLFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGL 145
>gi|390369630|ref|XP_001199509.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like,
partial [Strongylocentrotus purpuratus]
Length = 135
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 43/47 (91%)
Query: 287 NLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ VERF+QEVQ+ EARCFYGFQIA+EN+HSEMYSLLIDTYIKD +R
Sbjct: 51 SFVERFSQEVQVAEARCFYGFQIAIENIHSEMYSLLIDTYIKDSVQR 97
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAF 216
+ET+PCV KKA WAL WI +++ G R++AF
Sbjct: 103 AVETLPCVTKKAQWALNWIGSDSAKGGTRIVAF 135
>gi|393226483|gb|EJD34233.1| ribonucleotide reductase [Auricularia delicata TFB-10046 SS5]
Length = 316
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 253 DEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAM 311
+ D+ HW NKL +E++F+SH+LA A+S G++ EN+V RF E+QI EARCF G Q A+
Sbjct: 54 NADVQHWDNKLNMNERHFVSHILALIASSKGVIYENIVRRFACELQIAEARCFLGIQAAV 113
Query: 312 ENVHSEMYSLLIDTYIKD 329
+N H E SL+ ++D
Sbjct: 114 QNTHLEAASLMAHILVRD 131
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------------- 129
EP+L R V++PI + ++W +YKKA + FW+ ++D
Sbjct: 14 EPVLLPTHYRLVLYPINFVELWVLYKKAVSFFWSVGDLDFNADVQHWDNKLNMNERHFVS 73
Query: 130 --------SKVVVTNFEIR----ALKTGEEKA----SHSRNEPYLFRIKLAPGGICRYKV 173
SK V+ +R L+ E + + +L L + R +
Sbjct: 74 HILALIASSKGVIYENIVRRFACELQIAEARCFLGIQAAVQNTHLEAASLMAHILVRDPI 133
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+ ++ PCV+++A W RW+ ++ F RV+A A V G+FFSG+FAS+FW
Sbjct: 134 QHQYVFNA---LDGAPCVQRRAAWIARWLDNDDLPFRMRVVALAVVGGVFFSGAFASLFW 190
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
L++RGL+P + ISRDE L
Sbjct: 191 LEERGLLPAVAMLVRFISRDERL 213
>gi|359496795|ref|XP_003635337.1| PREDICTED: uncharacterized protein LOC100267871 [Vitis vinifera]
Length = 668
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 109/237 (45%), Gaps = 44/237 (18%)
Query: 62 QSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMY------- 114
++ L+ S +DK L ++ + RD + ++F + D K Y
Sbjct: 310 EATLAHSIAEDKMHLYRLRLVITLVTNVANNARDKVLKVLLFSATFNDTDKNYVTRKAFY 369
Query: 115 -----KKAEASFWTAEEV------DLSKVVV---TNFEIRALKTGEEKASHSRNEPYLFR 160
KK E S ++ +LSK+VV N+++ LK G + ++ +L+R
Sbjct: 370 HQMFVKKEELSLQVVKQCKVKCPDELSKIVVNLDVNYDL-PLKYGTQAKPDYEDKMHLYR 428
Query: 161 IKL------APGGICRYKVKKGGKITGGKTI------------ETMPCVKKKADW--ALR 200
++L + R KV K GK + + + + W +
Sbjct: 429 LRLVVTLVTSAANNARQKVMKTSSTDDGKFLLAAWNCRCPTFTDDIISLNAGDVWKGSTT 488
Query: 201 WIADEASS-FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+I +S+ F ER+I FA VE IFF GSF IFW KKRGLMPGLTFSNELISRDE L
Sbjct: 489 YIGKLSSTLFAERLITFACVERIFFLGSFCDIFW-KKRGLMPGLTFSNELISRDEGL 544
>gi|156843271|ref|XP_001644704.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
70294]
gi|156115352|gb|EDO16846.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
70294]
Length = 361
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 38/206 (18%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRAL 142
V+E+ EP+L +N RFV+ PI++ ++ YKK EA FW AEE+D S ++ N+ +A
Sbjct: 33 VEESQSKEPILMENKSRFVLMPIKFHTVYDGYKKREALFWPAEEIDFSHDII-NWGKKA- 90
Query: 143 KTGEEKASHSRNEPYLFRIKLA--------------PGGICRYKVKKGGKITGG------ 182
+ +K+ ++ +L L P C Y + + G
Sbjct: 91 -SDHDKSIIKKSLAFLCSSVLGSFYLPEHISSEVQIPEAKCFYGFEIMVENIHGEVYSLA 149
Query: 183 ---------------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
K ++ +++K +A RW E+S F E+++AF+S+E IF S
Sbjct: 150 IDQLVHNTDEIKKMFKDVDNAKFIERKKSFAERWFDKESSLFAEKLVAFSSIEAIFSLVS 209
Query: 228 FASIFWLKKRGLMPGLTFSNELISRD 253
F SI L+K+ ++PGL +LI +D
Sbjct: 210 FFSIMSLEKKDIIPGLISGIKLILKD 235
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 248 ELISRDEDLSHWNKLTRD-EKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I D+ +W K D +K I LAF +S + + L E + EVQI EA+CFYG
Sbjct: 75 EEIDFSHDIINWGKKASDHDKSIIKKSLAFLCSS-VLGSFYLPEHISSEVQIPEAKCFYG 133
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
F+I +EN+H E+YSL ID + + +E
Sbjct: 134 FEIMVENIHGEVYSLAIDQLVHNTDE 159
>gi|432951569|ref|XP_004084843.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Oryzias latipes]
Length = 168
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
E EPLL++NPRRFVIFP+QY DIW+MYKKAEASFWTAEE S +
Sbjct: 57 TEEEPLLKENPRRFVIFPVQYHDIWQMYKKAEASFWTAEEAVTSPIT 103
>gi|380863078|gb|AFF18832.1| ribonucleotide reductase beta subunit, partial [Dimocarpus longan]
Length = 74
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ IET+PCV +KA+WAL WI D + SF ER+IAFA VEGIFFSGSF +IFWLK
Sbjct: 23 RAIETVPCVARKAEWALSWI-DGSESFAERLIAFACVEGIFFSGSFCAIFWLK 74
>gi|328861691|gb|EGG10794.1| hypothetical protein MELLADRAFT_93450 [Melampsora larici-populina
98AG31]
Length = 130
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 250 ISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQ 308
I +D+ +W N+L DEK+FI H+LAF A SD IVN+NL++R++ EVQ EA+CFYGFQ
Sbjct: 66 IDPSKDMHNWENRLKNDEKHFIKHILAFLATSDRIVNQNLIKRYSGEVQAAEAQCFYGFQ 125
Query: 309 IAM 311
I +
Sbjct: 126 IMI 128
>gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 122
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI EA+ FYG
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYG 119
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMT 66
>gi|392585087|gb|EIW74428.1| hypothetical protein CONPUDRAFT_160131 [Coniophora puteana
RWD-64-598 SS2]
Length = 187
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+DL WN + +++++FISHVLAFFAASDGIVNENL F ++ +
Sbjct: 105 KDLHDWNNRPNKNQRHFISHVLAFFAASDGIVNENLSSAFLMRFRLLR------LDASTV 158
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
++HSE YSLLIDTYIKD +R
Sbjct: 159 SIHSETYSLLIDTYIKDPAQR 179
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%), Gaps = 2/42 (4%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLL+++ RRFV+FPI + D+ + ++AEASFW AEE+DLSK
Sbjct: 66 EPLLKESKRRFVLFPI-HSDLADV-QEAEASFWAAEEMDLSK 105
>gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
Length = 155
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 40/42 (95%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLL+++ RRFV+FPIQY +IW+MYKKAEASFWTAEE+DLSK
Sbjct: 73 EPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSK 114
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%), Gaps = 2/43 (4%)
Query: 254 EDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQE 295
+DL WN ++ +E++FISHVLAFFAASDGI +ENLVERF+ E
Sbjct: 114 KDLHDWNNRMNDNERHFISHVLAFFAASDGI-HENLVERFSNE 155
>gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 224
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
K I +P VK K + RWI+++ S + ER++AFA+ EGIF +G++AS+FWL + +MPG
Sbjct: 28 KEIANLPEVKHKTAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPG 87
Query: 243 LTFSNELISRD 253
L +N I RD
Sbjct: 88 LAMANRNICRD 98
>gi|452819014|gb|EME26126.1| ribonucleotide reductase small subunit [Galdieria sulphuraria]
Length = 313
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 38/194 (19%)
Query: 98 RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------------------- 131
+R+ +FPI + + YK+ EAS WT+ E+D S+
Sbjct: 4 KRYSLFPIVDELSYSFYKRQEASIWTSAEMDFSRDLEDFEKLDVEVRNILMNVLAFFASG 63
Query: 132 --VVVTNFEIRALKTGE--EKASHSRNEPYLFRI-----KLAPGGICRYKVKKGGKITGG 182
+V N R +++ E+ + + ++ + L + R ++ + G
Sbjct: 64 DGIVSKNISYRFMRSAPNFEQVAFYAAQLFIETVHAETYSLIISSLIRDTEERNKLFSAG 123
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
E V+ K W R+I D+ ER++AFA EGIFF+G+FA IFW+ + M
Sbjct: 124 ---ENNLAVRSKEKWMERFIEDDTVEEWERILAFACSEGIFFTGAFAVIFWIGEMRSMQN 180
Query: 243 LTFSNELISRDEDL 256
L F+N IS+DE L
Sbjct: 181 LIFANIQISKDEAL 194
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL + KL + + + +VLAFFA+ DGIV++N+ RF + E FY Q+ +E V
Sbjct: 38 DLEDFEKLDVEVRNILMNVLAFFASGDGIVSKNISYRFMRSAPNFEQVAFYAAQLFIETV 97
Query: 315 HSEMYSLLIDTYIKDQEER 333
H+E YSL+I + I+D EER
Sbjct: 98 HAETYSLIISSLIRDTEER 116
>gi|6782388|emb|CAB70099.1| ribonucleotide reductase R2 subunit [Plasmodium yoelii]
Length = 111
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 286 ENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
ENL +F +EV+I EA+ FY FQIA+EN+HSE YSLLID YIKD++ER
Sbjct: 1 ENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKER 48
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
IE +P +K KA WA +WI D +SF ER++A A VEGI +SGSF F KK+ + G
Sbjct: 54 AIENIPAIKNKALWAAKWIND-TNSFAERIVANACVEGILYSGSFLQFFGFKKQNKLHG 111
>gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis]
Length = 849
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 255 DLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
D W ++L E+ F+S VLA+ AASD ++ N+V RF +V++ EAR FY FQ+ +N
Sbjct: 620 DARDWQDRLAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFYAFQLFKKN 679
Query: 314 VHSEMYSLLIDTYIKDQEER 333
VH+EM S ++ +EE+
Sbjct: 680 VHTEMVSAILAALFAGKEEQ 699
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS 120
+PLL +NP R+ +FP++ +W YKKAEAS
Sbjct: 557 KPLLDENPDRYCMFPLKEDRVWSQYKKAEAS 587
>gi|291303011|ref|YP_003514289.1| ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
DSM 44728]
gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
DSM 44728]
Length = 338
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 45/219 (20%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N T+P L D + P++Y D ++ ++ A + WT EEVDL+ +
Sbjct: 2 NDSTQPRLLDPGMDLTLRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLATFTDSERH 61
Query: 134 VTNFEIRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKV 173
+ N + TG+ +++ N P YL R ++ + Y
Sbjct: 62 LINRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVHVQFYLTLLDTYLP 121
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEG 221
++ +E +P +K+KA++ +WI ++ +F +I FA+ +EG
Sbjct: 122 DPEDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLDELRTPEDRRAFLLNLICFAACIEG 181
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN 260
+FF G+FA ++WL+ RGL+ GL + RDE H N
Sbjct: 182 LFFYGAFAYVYWLRSRGLLDGLATGTNWVFRDES-CHMN 219
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL T E++ I+ ++AFFA D IV NLV + V EAR
Sbjct: 37 TWTVEEVDLASDLPDLATFTDSERHLINRLVAFFATGDTIVANNLVLNLYKHVNAPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 97 YLSRQLYEEAVHVQFYLTLLDTYLPDPEDR 126
>gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium
dendrobatidis JAM81]
Length = 356
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 57/88 (64%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
S E + +DL+ + +L+R E+ + + + G+ NE ++ R++ E+QI EARCF+
Sbjct: 50 SAEEVEMSDDLNGFEQLSRKEQSLMLQITSILCMGCGLNNEAILSRYSDEIQIPEARCFF 109
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQ+ +N+HSE+ +++D + + +++R
Sbjct: 110 GFQLMQKNIHSELSMVILDMFSESEKQR 137
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 36/41 (87%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
EPLL+ NPRRFV+FPIQ+ +IW+ YK EA+FW+AEEV++S
Sbjct: 17 EPLLKPNPRRFVLFPIQFNEIWQAYKNLEANFWSAEEVEMS 57
>gi|393224234|gb|EJD32719.1| ribonucleotide reductase [Auricularia delicata TFB-10046 SS5]
Length = 270
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I +P V++KA W +RW+ + F R++AF + + IF+SG+F + W +RG++P L
Sbjct: 98 AIANVPFVRRKAQWVMRWVDAQDPPFRVRLVAFLAAKAIFYSGTFFCLSWFDERGILPAL 157
Query: 244 TFSNELISRDEDL 256
++EL++RDE +
Sbjct: 158 CHASELVARDESV 170
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 255 DLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
D W++ L+ E+ ++++L AAS + ENL F V++ EARCFYG Q+A
Sbjct: 13 DCRDWDENLSDGERDLLAYLLVSVAASKAVDFENLASHFASCVRMEEARCFYGLQLASAG 72
Query: 314 VHSEMYSLLIDTYIKDQEER 333
H E +S +IK R
Sbjct: 73 AHMETFSRFARAFIKGAASR 92
>gi|393225089|gb|EJD33222.1| ferritin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 381
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDL---------------SKVVVTNFEIRALKTGEEK 148
PI Y +W +YKKA AS+W + VD ++V + A G
Sbjct: 55 PIPYSQLWSIYKKAAASYWVVDYVDPRPDVYDYRRSLNIIEKDIIVYLIALLASTKGVHS 114
Query: 149 ASHSR---------NEPYLFRIKLAPGG----ICRYKVKKGGKITGGK-----TIETMPC 190
S +R Y F I++A C + K + + + +P
Sbjct: 115 TSIARYFTGGPELMETKYFFGIQMAMENTHLDCCSRFLWAFVKDSDEREQVFDVLSELPY 174
Query: 191 VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 250
V+ + W RWI D S + R++AFA + + + G+FA + W++ R L+P L N L+
Sbjct: 175 VQNRTAWTKRWIDDTQSPYHVRLVAFACSQVLPYCGTFAILLWMEDRELLPSLARCNRLM 234
Query: 251 SRD 253
+ D
Sbjct: 235 AGD 237
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 266 EKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDT 325
EK I +++A A++ G+ + ++ FT ++ E + F+G Q+AMEN H + S +
Sbjct: 95 EKDIIVYLIALLASTKGVHSTSIARYFTGGPELMETKYFFGIQMAMENTHLDCCSRFLWA 154
Query: 326 YIKDQEER 333
++KD +ER
Sbjct: 155 FVKDSDER 162
>gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
Length = 331
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + + DL+ ++T +E++ I+ ++AFFA D IV NLV Q V EAR
Sbjct: 30 TWTVEEVDLNSDLADLARMTPEERHLINRLVAFFATGDSIVANNLVLNLYQHVNAPEARL 89
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +ER
Sbjct: 90 YLSRQLFEEAVHVQFYLTLLDTYLPDHDER 119
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEI 139
+L D + P++Y + ++ Y+ A + WT EEVDL+ + + N +
Sbjct: 1 MLLDPGMDLTLRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLADLARMTPEERHLINRLV 60
Query: 140 RALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKI 179
TG+ +++ N P YL R ++ + Y ++
Sbjct: 61 AFFATGDSIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERV 120
Query: 180 TGGKTIETMPCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGS 227
+E +P ++ KA++ RWI ++ +F +I FA+ +EG+FF G+
Sbjct: 121 KAFAAVEHIPSIRNKAEFCFRWIDSLGGLDRLESREDRRAFLLNLICFAACIEGLFFYGA 180
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA ++W + RGL+ GL + RDE +
Sbjct: 181 FAYVYWFRSRGLLSGLATGTNWVFRDESM 209
>gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 111
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQI 298
D H++ LT +E++FI +VLAFFAASDGIVNENLVERF+ EVQI
Sbjct: 68 DCEHFSTLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQI 111
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 83 VQENVET---EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
+Q++VE EPLL + +R+VIFPIQY +IW+ YK E++FWT EEVD++
Sbjct: 16 IQDSVEKPGYEPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMT 66
>gi|374986759|ref|YP_004962254.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
BCW-1]
gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
BCW-1]
Length = 340
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 51/204 (25%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA-------------- 149
P++Y D + Y+ A + WT EEVDL V ++ L GE+
Sbjct: 22 PMRYPDFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHLIGRLVAFFATGDSI 78
Query: 150 ---------SHSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y + +E +
Sbjct: 79 VANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENI 138
Query: 189 PCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGSFASIFWLKK 236
P +++KA++ RWI DE F +I FA+ +EG+FF G+FA ++W +
Sbjct: 139 PSIREKAEFCFRWIDSVDKIDRLETKDERRRFLLNLICFAACIEGLFFYGAFAYVYWFRS 198
Query: 237 RGLMPGLTFSNELISRDEDLSHWN 260
RGL+ GL + RDE + H N
Sbjct: 199 RGLLHGLATGTNWVFRDETM-HMN 221
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVADLAKLSPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 128
>gi|380863084|gb|AFF18835.1| ribonucleotide reductase small subunit, partial [Dimocarpus longan]
Length = 158
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/33 (90%), Positives = 31/33 (93%)
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FSGSF +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 1 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 33
>gi|440698868|ref|ZP_20881190.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
turgidiscabies Car8]
gi|440278680|gb|ELP66674.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
turgidiscabies Car8]
Length = 341
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VT 135
+TE L D + P++Y D ++ Y+ A + WT EEVDL V +
Sbjct: 7 KTEKNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSDLAKLSEGERHMI 66
Query: 136 NFEIRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKK 175
+ TG+ S++ N P YL R ++ + Y
Sbjct: 67 GRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDP 126
Query: 176 GGKITGGKTIETMPCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIF 223
+ +E +P +++KA++ RWI D + +R +I FA+ +EG+F
Sbjct: 127 ADRAAAFDAVENIPSIREKAEFCFRWINEVEKLDRLETQADRRRFLLNLICFAACIEGLF 186
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F G+FA ++W + RGL+ GL + RDE +
Sbjct: 187 FYGAFAYVYWFRSRGLLHGLATGTNWVFRDETM 219
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D+S KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 40 TWTVEEVDLHSDVSDLAKLSEGERHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 99
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +R
Sbjct: 100 YLSRQLFEEAVHVQFYLTLLDTYLPDPADR 129
>gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus]
gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus]
Length = 280
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 256 LSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQ--ITEARCFYGFQIAMEN 313
+S W+KLT+ EK F+ LAFFA DGIV ENLV F QEV E FY Q A E
Sbjct: 1 MSDWSKLTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAANEL 60
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+H+E Y LID + ++R
Sbjct: 61 IHNETYMNLIDNLLPSPKKR 80
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I P ++ A+W RW+ D ER+IAFA++EG+ F+GSFA+I + + GL
Sbjct: 86 AISNYPSIRLIANWVERWM-DRRIPLPERIIAFAALEGVIFTGSFAAIHYFTITNRLKGL 144
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENL 288
+NE IS+DE L H +Y + + AF S V E L
Sbjct: 145 RKANEWISKDEAL-HQRFAEAVYRYIVDVIKAFPRVSQERVQEIL 188
>gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
11B]
gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
11B]
Length = 348
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 50/200 (25%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKAS------------- 150
P++Y ++ +K A + WT EEVDL + ++R L E
Sbjct: 30 PMRYPHFFERFKAAIRNTWTVEEVDLHSDLA---DLRKLSPAEHHLVKRLVAFFATGDTI 86
Query: 151 ----------HSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y + + IE +
Sbjct: 87 VANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYITDERERAEAFAAIENI 146
Query: 189 PCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGSFASIFWLKK 236
P +K+KAD+ RWI A + SF +I FA+ +EG+FF G+FA +++L+
Sbjct: 147 PSIKRKADFCFRWIDSIFDLRELRTAADRRSFLLNLICFAACIEGLFFYGAFAYVYFLRS 206
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGL+ GL + RDE +
Sbjct: 207 RGLLNGLASGTNWVFRDESM 226
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ KL+ E + + ++AFFA D IV NLV Q + EAR
Sbjct: 47 TWTVEEVDLHSDLADLRKLSPAEHHLVKRLVAFFATGDTIVANNLVLNLYQHINSPEARL 106
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTYI D+ ER
Sbjct: 107 YLSRQLFEEAVHVQFYLALLDTYITDERER 136
>gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
44928]
gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
44928]
Length = 331
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ ++L+ E++ +S ++AFFA D IV NLV Q V E R
Sbjct: 30 TWTVEEVDLHSDLTDLDRLSAAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 89
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D++ER
Sbjct: 90 YLSRQLFEEAVHVQFYLNLLDTYVPDEDER 119
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 44/209 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA---------- 141
+L D + P++Y + Y+ A + WT EEVDL + + A
Sbjct: 1 MLLDPGLDLTLRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLTDLDRLSAAERHLVSRLV 60
Query: 142 --LKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKI 179
TG+ +++ N P YL R ++ + Y + +
Sbjct: 61 AFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERT 120
Query: 180 TGGKTIETMPCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGS 227
+E +P +++KA++ RWI ++ +F +I FA+ +EG+FF G+
Sbjct: 121 EAFAAVENIPSIRRKAEFCFRWIDSLGNLQRLESREDRRAFLLNLICFAACIEGLFFYGA 180
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA +++L+ RGL+ GL + RDE +
Sbjct: 181 FAYVYFLRSRGLLHGLASGTNWVFRDESM 209
>gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sviceus ATCC 29083]
gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sviceus ATCC 29083]
Length = 340
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 22 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVTDLAKLSPAEQHLIGRLVAFFATGDSIVAN 81
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 82 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPQDRAAAFDAVENIPSI 141
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RWI D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 142 REKAEFCFRWINEVEKLDRLESQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 201
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 202 LHGLATGTNWVFRDETM 218
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVTDLAKLSPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPQDR 128
>gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
albus J1074]
gi|359149120|ref|ZP_09182184.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. S4]
gi|421744323|ref|ZP_16182311.1| ribonucleotide reductase, beta subunit [Streptomyces sp. SM8]
gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
albus J1074]
gi|406687275|gb|EKC91308.1| ribonucleotide reductase, beta subunit [Streptomyces sp. SM8]
Length = 350
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 32 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPGEQHLIGRLVAFFATGDSIVAN 91
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 92 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRADAFAAVENIPSI 151
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ D+ S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 152 REKAEFCFRWMDSVDKLDQLESQADRRKFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 211
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 212 LHGLATGTNWVFRDETM 228
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 49 TWTVEEVDLHSDVADLAKLSPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 108
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +R
Sbjct: 109 YLSRQLFEEAVHVQFYLTLLDTYLPDPADR 138
>gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
scabiei 87.22]
gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
scabiei 87.22]
Length = 355
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 50/217 (23%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGE 146
V T+ L D + P++Y D ++ Y+ A + WT EEVDL V ++ L GE
Sbjct: 20 VMTDQNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGE 76
Query: 147 EKA-----------------------SHSRNEP----YLFR--------IKLAPGGICRY 171
+ N P YL R ++ + Y
Sbjct: 77 QHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTY 136
Query: 172 KVKKGGKITGGKTIETMPCVKKKADWALRWI-----ADEASSFGER------VIAFAS-V 219
++ +E +P +++KA++ +W+ D S +R +I FA+ +
Sbjct: 137 LPDPADRVAAFAAVENIPSIREKAEFCFKWMDSVEKLDRLESQADRRRFLLNLICFAACI 196
Query: 220 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
EG+FF G+FA ++W + RGL+ GL + RDE +
Sbjct: 197 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETM 233
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 54 TWTVEEVDLHSDVADLAKLSEGEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 113
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +R
Sbjct: 114 YLSRQLFEEAVHVQFYLTLLDTYLPDPADR 143
>gi|456388970|gb|EMF54410.1| nrdM protein [Streptomyces bottropensis ATCC 25435]
Length = 337
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA-------------- 149
P++Y D ++ Y+ A + WT EEVDL V ++ L GE+
Sbjct: 19 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGEQHMIGRLVAFFATGDSI 75
Query: 150 ---------SHSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y ++ +E +
Sbjct: 76 VANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRVAAFAAVENI 135
Query: 189 PCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKK 236
P +++KA++ +W+ D S +R +I FA+ +EG+FF G+FA ++W +
Sbjct: 136 PSIREKAEFCFKWMDSVEKLDRLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRS 195
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGL+ GL + RDE +
Sbjct: 196 RGLLHGLATGTNWVFRDETM 215
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 36 TWTVEEVDLHSDVADLAKLSEGEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 95
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +R
Sbjct: 96 YLSRQLFEEAVHVQFYLTLLDTYLPDPADR 125
>gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5]
gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5]
Length = 342
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ KL+ E++ +S ++AFFA D IV NLV Q V E R
Sbjct: 41 TWTVEEVDLHSDLADLAKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 100
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D++ER
Sbjct: 101 YLSRQLFEEAVHVQFYLNLLDTYVPDEKER 130
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 46/220 (20%)
Query: 82 PVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL------------ 129
PV T +L D + P++Y + +K A + WT EEVDL
Sbjct: 2 PVTTTAPTRHMLLDPGMDLTLRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLADLAKLSP 61
Query: 130 -SKVVVTNFEIRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGI 168
+ +V+ + TG+ +++ N P YL R ++ +
Sbjct: 62 AERHLVSRL-VAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLL 120
Query: 169 CRYKVKKGGKITGGKTIETMPCVKKKADWALRWIAD-----------EASSFGERVIAFA 217
Y + + +E +P + +KA++ RWI + +F +I FA
Sbjct: 121 DTYVPDEKERFAAFDAVENIPSIARKAEFCFRWIDSIFELRELRTRADRRAFLLNLICFA 180
Query: 218 S-VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+ +EG+FF G+FA +++L+ RGL+ GL + RDE +
Sbjct: 181 ACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESM 220
>gi|383777025|ref|YP_005461591.1| putative ribonucleoside-diphosphate reductase small subunit
[Actinoplanes missouriensis 431]
gi|381370257|dbj|BAL87075.1| putative ribonucleoside-diphosphate reductase small subunit
[Actinoplanes missouriensis 431]
Length = 331
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ KLT E++ +S ++AFFA D IV NLV Q V E R
Sbjct: 30 TWTVEEVDLHSDLADLAKLTPAEQHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 89
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +ER
Sbjct: 90 YLSRQLFEEAVHVQFYLNLLDTYVPDPDER 119
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 44/209 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEI 139
+L D + P++Y + +K A + WT EEVDL + + + +
Sbjct: 1 MLLDPGMDLTLRPMKYPHFFDRFKDAIKNTWTVEEVDLHSDLADLAKLTPAEQHLVSRLV 60
Query: 140 RALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKI 179
TG+ +++ N P YL R ++ + Y +
Sbjct: 61 AFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDPDERA 120
Query: 180 TGGKTIETMPCVKKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIFFSGS 227
++ +P + +KA++ +WI + +F VI FA+ +EG+FF G+
Sbjct: 121 AAFAAVDNIPSIARKAEFCFKWIDSVFELRELRTKADRRAFLLNVICFAACIEGLFFYGA 180
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA +++L+ RGL+ GL + RDE +
Sbjct: 181 FAYVYFLRSRGLLQGLASGTNWVFRDESM 209
>gi|443290856|ref|ZP_21029950.1| Ribonucleoside-diphosphate reductase [Micromonospora lupini str.
Lupac 08]
gi|385886411|emb|CCH18024.1| Ribonucleoside-diphosphate reductase [Micromonospora lupini str.
Lupac 08]
Length = 345
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ +KL+ E++ +S ++AFFA D IV NLV Q V E R
Sbjct: 44 TWTVEEVDLHADLADLDKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 103
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D+ ER
Sbjct: 104 YLSRQLFEEAVHVQFYLNLLDTYVPDETER 133
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 46/210 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------SKVVVTNFE 138
+L D + P++Y + ++ A + WT EEVDL + +V+
Sbjct: 15 MLLDPGMDLTLRPMRYPHFFDRFRAAIRNTWTVEEVDLHADLADLDKLSPAERHLVSRL- 73
Query: 139 IRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGK 178
+ TG+ +++ N P YL R ++ + Y + +
Sbjct: 74 VAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDETER 133
Query: 179 ITGGKTIETMPCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSG 226
IE +P +++KA++ RWI +D+ +F +I FA+ +EG+FF G
Sbjct: 134 FAAFAAIENIPSIRRKAEFCFRWIDSLGELRELRTSDDRRAFLLNLICFAACIEGLFFYG 193
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+FA +++L+ RGL+ GL + RDE +
Sbjct: 194 AFAYVYFLRSRGLLHGLASGTNWVFRDESM 223
>gi|386839868|ref|YP_006244926.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374100169|gb|AEY89053.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451793162|gb|AGF63211.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 337
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 19 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVAN 78
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 79 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 138
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ +WI D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 139 REKAEFCFKWINEVEKIDRLDSKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 198
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 199 LHGLATGTNWVFRDETM 215
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT +E++ I ++AFFA D IV NLV + + EAR
Sbjct: 36 TWTVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 95
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 96 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 125
>gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
Length = 319
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
I ++K ADW +W+ + A ER+IAFA++EG+ F+G+FA++++ + GL
Sbjct: 124 AISNYASIRKIADWVEKWM-NPAVPLPERIIAFAALEGVIFTGAFAAVYYFTISNRLKGL 182
Query: 244 TFSNELISRDEDL 256
+NE ISRDE L
Sbjct: 183 RTANEWISRDEAL 195
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 234 LKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFT 293
LKK +P E + +D W L+++EK F +LAFFA DG+V ENLV F
Sbjct: 24 LKKSHWIP------EEVDTSKDAQDWQLLSKEEKSFAKLILAFFAQFDGLVVENLVRHFQ 77
Query: 294 QEVQ--ITEARCFYGFQIAMENVHSEMYSLLIDTYI 327
QEV E FY Q A E +H+E Y LI+ +
Sbjct: 78 QEVSSFAKEIEWFYILQAANELIHNETYMNLINVLL 113
>gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola
CNS-205]
gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola
CNS-205]
Length = 350
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ KL+ E++ +S ++AFFA D IV NLV Q V E R
Sbjct: 49 TWTVEEVDLHSDLADLAKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 108
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D++ER
Sbjct: 109 YLSRQLFEEAVHVQFYLNLLDTYVPDEKER 138
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------SKVVVTNFE 138
+L D + P++Y + +K+A + WT EEVDL + +V+
Sbjct: 20 MLLDPGMDLTLRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLADLAKLSPAERHLVSRL- 78
Query: 139 IRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGK 178
+ TG+ +++ N P YL R ++ + Y + +
Sbjct: 79 VAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKER 138
Query: 179 ITGGKTIETMPCVKKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIFFSG 226
+E +P + +KA++ RWI + +F +I FA+ +EG+FF G
Sbjct: 139 FAAFAAVENIPSIARKAEFCFRWIDSIFELRELRTRADRRAFLLNLICFAACIEGLFFYG 198
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+FA +++L+ RGL+ GL + RDE +
Sbjct: 199 AFAYVYFLRSRGLLNGLASGTNWVFRDESM 228
>gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
C]
gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
C]
Length = 356
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 51/234 (21%)
Query: 71 KDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
+ +T + AP +N L D + P++Y D ++ Y+ A + WT EEVDL
Sbjct: 11 RPSTTALRADAPHSKN------LLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLH 64
Query: 131 KVV-----VTNFE-------IRALKTGEEKASHSR--------NEP----YLFR------ 160
V +T E + TG+ S++ N P YL R
Sbjct: 65 SDVADLAKLTPAEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEA 124
Query: 161 --IKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWI-----------ADEAS 207
++ + Y + +E +P +++KA + +W+ A +
Sbjct: 125 VHVQFYLTLLDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVEKIERLETAADRR 184
Query: 208 SFGERVIAFAS-VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWN 260
F +I FA+ +EG+FF G+FA ++W + RGL+ GL + RDE + H N
Sbjct: 185 RFLLNLICFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETM-HMN 237
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 55 TWTVEEVDLHSDVADLAKLTPAEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 114
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 115 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 144
>gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG]
gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF]
gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces sp. Tu6071]
gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces sp. Tu6071]
Length = 345
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D+S KLT E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 44 TWTVEEVDLHSDVSDLAKLTPGEQHLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 103
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 104 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 133
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V + + TG+ S+
Sbjct: 27 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVSDLAKLTPGEQHLIGRLVAFFATGDSIVSN 86
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 87 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 146
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
+ KA++ +WI D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 147 RAKAEFCFKWIDEVEKIDRLESRSDRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 206
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 207 LHGLATGTNWVFRDETM 223
>gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB78]
gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB78]
Length = 345
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D+S KLT E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 44 TWTVEEVDLHSDVSDLAKLTPGEQHLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 103
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 104 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 133
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V + + TG+ S+
Sbjct: 27 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVSDLAKLTPGEQHLIGRLVAFFATGDSIVSN 86
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 87 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 146
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
+ KA++ +WI D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 147 RAKAEFCFKWIDEVEKIDRLESQSDRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 206
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 207 LHGLATGTNWVFRDETM 223
>gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
Mg1]
gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
Mg1]
Length = 338
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFE-------IRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V +T E + TG+ S+
Sbjct: 20 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPAEQHMIGRLVAFFATGDSIVSN 79
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 80 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVEEIPSI 139
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +WI D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 140 REKAQFCFKWINEVEKLDRLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 199
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 200 LHGLATGTNWVFRDETM-HMN 219
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVADLAKLTPAEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 126
>gi|357401660|ref|YP_004913585.1| ribonucleoside-diphosphate reductase small subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337768069|emb|CCB76782.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 342
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 24 PMRYPDFYERYRNAIKNNWTVEEVDLHSDVADLAKLSPGEQHLIGRLVAFFATGDSIVAN 83
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 84 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 143
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + RW+ D + ER +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 144 REKAQFCFRWMDSVEEIDRLRTKAERRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 203
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 204 LHGLATGTNWVFRDESM 220
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR +
Sbjct: 45 EEVDLHSDVADLAKLSPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSR 104
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ E VH + Y L+DTY+ D ++R
Sbjct: 105 QLFEEAVHVQFYLTLLDTYLPDPDDR 130
>gi|386357723|ref|YP_006055969.1| ribonucleoside-diphosphate reductase small subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365808231|gb|AEW96447.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 340
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 22 PMRYPDFYERYRNAIKNNWTVEEVDLHSDVADLAKLSPGEQHLIGRLVAFFATGDSIVAN 81
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 82 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 141
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + RW+ D + ER +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 142 REKAQFCFRWMDSVEEIDRLRTKAERRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 201
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 202 LHGLATGTNWVFRDESM 218
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR +
Sbjct: 43 EEVDLHSDVADLAKLSPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSR 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ E VH + Y L+DTY+ D ++R
Sbjct: 103 QLFEEAVHVQFYLTLLDTYLPDPDDR 128
>gi|408826315|ref|ZP_11211205.1| ribonucleoside-diphosphate reductase [Streptomyces somaliensis DSM
40738]
Length = 339
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 38 TWTVEEVDLHSDVADLAKLTPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 97
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 98 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 127
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 44/210 (20%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA--------- 141
P L D + P++Y D ++ Y+ A + WT EEVDL V ++
Sbjct: 8 PNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPGEQHLIGRL 67
Query: 142 ---LKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGK 178
TG+ +++ N P YL R ++ + Y +
Sbjct: 68 VAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 127
Query: 179 ITGGKTIETMPCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSG 226
+E +P +++KA + RW+ D + +R +I FA+ +EG+FF G
Sbjct: 128 TAAFAAVENIPSIREKAAFCFRWMDSVEKLDRLETKADRRRFLLNLICFAACIEGLFFYG 187
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+FA ++W + RGL+ GL + RDE +
Sbjct: 188 AFAYVYWFRSRGLLHGLATGTNWVFRDETM 217
>gi|386383363|ref|ZP_10068865.1| Ribonucleoside-diphosphate reductase [Streptomyces tsukubaensis
NRRL18488]
gi|385669178|gb|EIF92419.1| Ribonucleoside-diphosphate reductase [Streptomyces tsukubaensis
NRRL18488]
Length = 342
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 24 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPGEQHLIGRLVAFFATGDSIVAN 83
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 84 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVENIPSI 143
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + RW+ D+ + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 144 REKAQFCFRWMDQVEKLDQLDTQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 203
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 204 LHGLATGTNWVFRDETM-HMN 223
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 41 TWTVEEVDLHSDVADLAKLTPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 100
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 101 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 130
>gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain
[Plesiocystis pacifica SIR-1]
gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain
[Plesiocystis pacifica SIR-1]
Length = 356
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 47/210 (22%)
Query: 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-------------------- 130
P L D + P+ Y D + Y++A + WT EEVD S
Sbjct: 24 PRLLDPGTCLTLRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMGPAERHLIQR 83
Query: 131 ---------KVVVTNFEI---RALKTGEEKASHSRN--EPYLFRIKLAPGGICRYKVKKG 176
+V N + R L E + SR E L ++ + Y
Sbjct: 84 LVAFFATGDSIVANNLVLSLYRHLNAPEARMYLSRQLYEEAL-HVQFYLTLLDTYVPDPD 142
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEAS-----------SFGERVIAFASV-EGIFF 224
+ +ET+P +++KA++ LRW A+ F +I FA+ EG+FF
Sbjct: 143 QRHAAFAAVETIPSIRRKAEFCLRWQDTVAAIPRLDGPAHRRQFLLNLICFAACTEGLFF 202
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDE 254
G+FA +++L+ RGL+ GL + RDE
Sbjct: 203 YGAFAYVYFLRSRGLLHGLAAGTNWVFRDE 232
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 266 EKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDT 325
E++ I ++AFFA D IV NLV + + EAR + Q+ E +H + Y L+DT
Sbjct: 77 ERHLIQRLVAFFATGDSIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLTLLDT 136
Query: 326 YIKDQEER 333
Y+ D ++R
Sbjct: 137 YVPDPDQR 144
>gi|182436093|ref|YP_001823812.1| ribonucleoside-diphosphate reductase small subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces griseus
XylebKG-1]
gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces griseus subsp. griseus NBRC 13350]
gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces griseus
XylebKG-1]
Length = 338
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ S+
Sbjct: 20 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSN 79
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 80 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVEEIPSI 139
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + RW+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 140 REKAQFCFRWMDSVEKIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 199
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 200 LHGLATGTNWVFRDETM-HMN 219
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 126
>gi|358457765|ref|ZP_09167981.1| Ribonucleoside-diphosphate reductase [Frankia sp. CN3]
gi|357079045|gb|EHI88488.1| Ribonucleoside-diphosphate reductase [Frankia sp. CN3]
Length = 331
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ ++L+ E++ ++ ++AFFA D IV NLV + + EAR
Sbjct: 30 TWTVEEVDLHSDLADLHRLSPAERHLVNRLVAFFATGDTIVANNLVLNLYRHINAPEARL 89
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +ER
Sbjct: 90 YLSRQLFEEAVHVQFYLTLLDTYLPDADER 119
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 44/209 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEI 139
+L D + P+ Y + Y+ A + WT EEVDL + + N +
Sbjct: 1 MLLDPGMSLTLRPMSYPAFYDRYRAAIRNTWTVEEVDLHSDLADLHRLSPAERHLVNRLV 60
Query: 140 RALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKI 179
TG+ +++ N P YL R ++ + Y +
Sbjct: 61 AFFATGDTIVANNLVLNLYRHINAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDADERA 120
Query: 180 TGGKTIETMPCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGS 227
+E +P ++ KA + RWI D+ S+ +R +I FA+ +EG+FF G+
Sbjct: 121 QAFAAVENVPSIRAKAQFCFRWIDTLGGLDQLSTRADRRAFLLNLICFAACIEGLFFYGA 180
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA +++L+ RGL+ GL + RDE +
Sbjct: 181 FAYVYFLRSRGLLHGLASGTNWVFRDESM 209
>gi|345009208|ref|YP_004811562.1| ribonucleotide reductase [Streptomyces violaceusniger Tu 4113]
gi|344035557|gb|AEM81282.1| ribonucleotide reductase [Streptomyces violaceusniger Tu 4113]
Length = 340
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y + + Y+ A + WT EEVDL V ++ TG+ S+
Sbjct: 22 PMRYPEFYDRYRDAIKNTWTVEEVDLHSDVTDLAKLSPGEQHLIGRLVAFFATGDSIVSN 81
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 82 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 141
Query: 192 KKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ + F +I FA+ +EG+FF G+FA ++WL+ RGL
Sbjct: 142 REKAEFCFRWMDSVEKIDRLETKQDRRRFLLNLICFAACIEGLFFYGAFAYVYWLRSRGL 201
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 202 LHGLATGTNWVFRDESM 218
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVTDLAKLSPGEQHLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 128
>gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces jumonjinensis]
Length = 322
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 38 TWTVEEVDLHSDVTDLAKLTPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 97
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 98 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 127
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 21 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVTDLAKLTPGEQHLIGRLVAFFATGDSIVAN 80
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 81 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVENIPSI 140
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +W+ D+ + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 141 REKAQFCFKWMDSVEKIDQLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 200
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 201 LHGLATGTNWVFRDETM-HMN 220
>gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum So ce56]
gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum So ce56]
Length = 339
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 46/196 (23%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFE-------IRALKTGEEKASH 151
P+ Y ++MY+ A + WT EEVD S V +T+ E + TG+ ++
Sbjct: 21 PMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLRKMTDAERHLVQRLVAFFATGDSIVAN 80
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 81 NLVLNLYRHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPEDRHRAFAAVENIPSI 140
Query: 192 KKKADWALRWIADEASSFG------ER------VIAFAS-VEGIFFSGSFASIFWLKKRG 238
++KAD+ +RW+ D S G ER +I FA+ VEG+FF G+FA +++L+ RG
Sbjct: 141 RQKADFCMRWL-DSVESLGRLDTRAERRRFLLNLICFAACVEGLFFFGAFAYVYFLRSRG 199
Query: 239 LMPGLTFSNELISRDE 254
L+ GL + RDE
Sbjct: 200 LLHGLAAGTSWVFRDE 215
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D+ K+T E++ + ++AFFA D IV NLV + + EAR
Sbjct: 38 TWTVEEVDFSTDVGDLRKMTDAERHLVQRLVAFFATGDSIVANNLVLNLYRHINAPEARM 97
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E +H + Y L+DTYI D E+R
Sbjct: 98 YLSRQLYEEALHVQFYLTLLDTYIPDPEDR 127
>gi|441155687|ref|ZP_20966846.1| ribonucleoside-diphosphate reductase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440617882|gb|ELQ80969.1| ribonucleoside-diphosphate reductase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 354
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 51/204 (25%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA-------------- 149
P++Y D ++ Y+ A + WT EEVDL V ++ L GE+
Sbjct: 36 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGDSI 92
Query: 150 ---------SHSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y + +E +
Sbjct: 93 VANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENI 152
Query: 189 PCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKK 236
P +++KA++ +W+ D S +R +I FA+ +EG+FF G+FA ++W +
Sbjct: 153 PSIREKAEFCFKWMDSVETIDRLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRS 212
Query: 237 RGLMPGLTFSNELISRDEDLSHWN 260
RGL+ GL + RDE + H N
Sbjct: 213 RGLLHGLATGTNWVFRDETM-HMN 235
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 53 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 112
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 113 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 142
>gi|386842422|ref|YP_006247480.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374102723|gb|AEY91607.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451795715|gb|AGF65764.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 337
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 19 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVAN 78
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 79 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 138
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ +WI D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 139 REKAEFCFKWINEVEKIDRLDTKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 198
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 199 LHGLATGTNWVFRDETM 215
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT +E++ I ++AFFA D IV NLV + + EAR
Sbjct: 36 TWTVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 95
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 96 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 125
>gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB74]
gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB74]
Length = 345
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 27 PMRYPDFYERYRNAIKNTWTVEEVDLHSDVADLAKLTPGEQHLIGRLVAFFATGDSIVAN 86
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 87 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRADAFAAVENIPSI 146
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ +WI D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 147 REKAEFCFKWIDEVEKIDRLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 206
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 207 LHGLATGTNWVFRDETM 223
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 44 TWTVEEVDLHSDVADLAKLTPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 103
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 104 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 133
>gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM
20547]
gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM
20547]
Length = 365
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 244 TFSNELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEAR 302
T++ E I DL+ NKL+ E++ +S ++AFFA D IV NLV + + EAR
Sbjct: 63 TWTVEEIDLHSDLADLHNKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYEHINSPEAR 122
Query: 303 CFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D+ ER
Sbjct: 123 LYLSRQLFEEAVHVQFYLTLLDTYVPDEAER 153
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 108/270 (40%), Gaps = 49/270 (18%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------- 129
+ + +++ V+ L D + P++Y ++M++ A + WT EE+DL
Sbjct: 20 HLESDLRDAVKQGSSLLDPGMSLTLRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLADLH 79
Query: 130 ------SKVVVTNFEIRALKTGEEKASHSR--------NEP----YLFR--------IKL 163
+ +V+ + TG+ +++ N P YL R ++
Sbjct: 80 NKLSPAERHLVSRL-VAFFATGDTIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQF 138
Query: 164 APGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGE------------ 211
+ Y + + +E +P ++ KA++ WI D + G+
Sbjct: 139 YLTLLDTYVPDEAERFEAFAAVENIPSIRTKAEFCFTWI-DSIENLGQLETKEQRRQFLL 197
Query: 212 RVIAFAS-VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFI 270
+I F + +EG+FF G+FA +++L+ RGL+ GL + RDE + E
Sbjct: 198 NLICFGTCIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRS 257
Query: 271 SHVLAFFAASDGIVNENLVERFTQEVQITE 300
F A G V + L+E E Q E
Sbjct: 258 EEPDLFDAEMAGQVRQMLMEAVDAEAQFAE 287
>gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
39149]
gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
39149]
Length = 344
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ +L+ E++ +S ++AFFA D IV NLV Q V E R
Sbjct: 43 TWTVEEVDLHSDLADLARLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 102
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D+ ER
Sbjct: 103 YLSRQLFEEAVHVQFYLNLLDTYVPDERER 132
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 46/215 (21%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------SKVV 133
++T L D + P++Y + +K A + WT EEVDL + +
Sbjct: 9 LDTRHTLLDPGMDLTLRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLADLARLSPAERHL 68
Query: 134 VTNFEIRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKV 173
V+ + TG+ +++ N P YL R ++ + Y
Sbjct: 69 VSRL-VAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVP 127
Query: 174 KKGGKITGGKTIETMPCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEG 221
+ + IE +P +++KA++ RWI ++ +F +I FA+ +EG
Sbjct: 128 DERERFAAFAAIENIPSIRRKAEFCFRWIDSIFELRELKTREDRRAFLLNLICFAACIEG 187
Query: 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+FF G+FA +++L+ RGL+ GL + RDE +
Sbjct: 188 LFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESM 222
>gi|395771544|ref|ZP_10452059.1| ribonucleoside-diphosphate reductase [Streptomyces acidiscabies
84-104]
Length = 338
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V + + TG+ ++
Sbjct: 20 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVSDLAKLSPEEQHLIGRLVAFFATGDSIVAN 79
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 80 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRTAAFAAVENIPSI 139
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ +WI D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 140 REKAEFCFKWINEVEKLDSLQTKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 199
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 200 LHGLATGTNWVFRDETM 216
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D+S KL+ +E++ I ++AFFA D IV NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVSDLAKLSPEEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 126
>gi|408529356|emb|CCK27530.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
davawensis JCM 4913]
Length = 337
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFE-------IRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V +T E + TG+ ++
Sbjct: 19 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPAEQHLIGRLVAFFATGDSIVAN 78
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 79 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVENIPSI 138
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +WI D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 139 REKAGFCFKWINEVEKLDRLESQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 198
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 199 LHGLATGTNWVFRDETM 215
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 36 TWTVEEVDLHSDVADLAKLTPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 95
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 96 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 125
>gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
avermitilis MA-4680]
gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces avermitilis MA-4680]
Length = 338
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 45/213 (21%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFE---- 138
ET+ LL D + P++Y D ++ Y+ A + WT EEVDL V +T E
Sbjct: 5 ETKNLL-DPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPAEQHLI 63
Query: 139 ---IRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKK 175
+ TG+ +++ N P YL R ++ + Y
Sbjct: 64 GRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDP 123
Query: 176 GGKITGGKTIETMPCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIF 223
+ +E +P +++KA++ +WI D + +R +I FA+ +EG+F
Sbjct: 124 EDRTAAFAAVENIPSIREKAEFCFKWINEVEKLDRLETKADRRRFLLNLICFAACIEGLF 183
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F G+FA ++W + RGL+ GL + RDE +
Sbjct: 184 FYGAFAYVYWFRSRGLLHGLATGTNWVFRDETM 216
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVADLAKLTPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 126
>gi|443624323|ref|ZP_21108797.1| putative Ribonucleoside-diphosphate reductase, beta subunit
[Streptomyces viridochromogenes Tue57]
gi|443342237|gb|ELS56405.1| putative Ribonucleoside-diphosphate reductase, beta subunit
[Streptomyces viridochromogenes Tue57]
Length = 337
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 36 TWTVEEVDLHSDVADLAKLTPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 95
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 96 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 125
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFE-------IRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V +T E + TG+ ++
Sbjct: 19 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPAEQHLIGRLVAFFATGDSIVAN 78
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 79 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVENIPSI 138
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ +W+ D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 139 REKAEFCFKWMDSVEKLDRLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 198
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 199 LHGLATGTNWVFRDETM 215
>gi|408680594|ref|YP_006880421.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Streptomyces venezuelae ATCC 10712]
gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Streptomyces venezuelae ATCC 10712]
Length = 338
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 51/204 (25%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA-------------- 149
P++Y D ++ Y+ A + WT EEVDL V ++ L GE+
Sbjct: 20 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPGEQHMIGRLVAFFATGDSI 76
Query: 150 ---------SHSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y + +E +
Sbjct: 77 VANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVENI 136
Query: 189 PCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKK 236
P +++KA + RW+ D + +R +I FA+ +EG+FF G+FA ++W +
Sbjct: 137 PSIREKAQFCFRWMDSVEKIDRLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRS 196
Query: 237 RGLMPGLTFSNELISRDEDLSHWN 260
RGL+ GL + RDE + H N
Sbjct: 197 RGLLHGLATGTNWVFRDETM-HMN 219
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVADLAKLTPGEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 126
>gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 343
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y + Y+ A + WT EEVDL V + + + TG+ S+
Sbjct: 25 PMRYPQFYDRYRDAIKNTWTVEEVDLHSDVADLAKLSPGEQHMISRLVAFFATGDSIVSN 84
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 85 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAASFAAVENIPSI 144
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 145 REKAEFCFRWMDSVEKIDRLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 204
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 205 LHGLATGTNWVFRDESM 221
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ IS ++AFFA D IV+ NLV + + EAR
Sbjct: 42 TWTVEEVDLHSDVADLAKLSPGEQHMISRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 101
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 102 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 131
>gi|453055152|gb|EMF02599.1| ribonucleoside-diphosphate reductase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 340
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D EER
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPEER 128
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 51/204 (25%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA-------------- 149
P++Y D + Y+ A + WT EEVDL V ++ L GE+
Sbjct: 22 PMRYPDFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGDSI 78
Query: 150 ---------SHSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y + +E +
Sbjct: 79 VANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEERAAAFAAVENI 138
Query: 189 PCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKK 236
P ++ KA + +W+ D+ S +R +I FA+ +EG+FF G+FA ++W +
Sbjct: 139 PSIRDKAQFCFKWMDSVEKIDKLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRS 198
Query: 237 RGLMPGLTFSNELISRDEDLSHWN 260
RGL+ GL + RDE + H N
Sbjct: 199 RGLLHGLATGTNWVFRDETM-HMN 221
>gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
clavuligerus ATCC 27064]
gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein
[Streptomyces clavuligerus ATCC 27064]
gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
ATCC 27064]
gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
clavuligerus ATCC 27064]
gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces clavuligerus ATCC 27064]
gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein
[Streptomyces clavuligerus ATCC 27064]
Length = 339
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V + + TG+ ++
Sbjct: 21 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVPDLAKLSPGEQHLIGRLVAFFATGDSIVAN 80
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 81 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAVENIPSI 140
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + RW+ D+ + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 141 REKAQFCFRWMDSVEKLDQLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 200
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 201 LHGLATGTNWVFRDETM-HMN 220
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D+ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 38 TWTVEEVDLHSDVPDLAKLSPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 97
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 98 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 127
>gi|357411278|ref|YP_004923014.1| ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
ATCC 33331]
gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
ATCC 33331]
Length = 338
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ S+
Sbjct: 20 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSN 79
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 80 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVEEIPSI 139
Query: 192 KKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + RW+ + F +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 140 REKAQFCFRWMDSVEKIERLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 199
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 200 LHGLATGTNWVFRDETM-HMN 219
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 126
>gi|345848582|ref|ZP_08801602.1| Ribonucleoside-diphosphate reductase [Streptomyces zinciresistens
K42]
gi|345639927|gb|EGX61414.1| Ribonucleoside-diphosphate reductase [Streptomyces zinciresistens
K42]
Length = 337
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VT 135
ET+ LL D + P++Y D ++ Y+ A + WT EEVDL V +
Sbjct: 4 ETKNLL-DPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLTPEEHHLI 62
Query: 136 NFEIRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKK 175
+ TG+ +++ N P YL R ++ + Y
Sbjct: 63 GRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDP 122
Query: 176 GGKITGGKTIETMPCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIF 223
+ +E +P +++KA + +WI D S +R +I FA+ +EG+F
Sbjct: 123 RDRAAAFDAVENIPSIREKAGFCFKWINEVEKLDRLESRSDRRRFLLNLICFAACIEGLF 182
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F G+FA ++W + RGL+ GL + RDE +
Sbjct: 183 FYGAFAYVYWFRSRGLLHGLATGTNWVFRDETM 215
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KLT +E + I ++AFFA D IV NLV + + EAR
Sbjct: 36 TWTVEEVDLHSDVADLAKLTPEEHHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 95
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D +R
Sbjct: 96 YLSRQLFEEAVHVQFYLTLLDTYLPDPRDR 125
>gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris
AB-18-032]
gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris
AB-18-032]
Length = 342
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ KL+ E++ +S ++AFFA D IV NLV Q + E R
Sbjct: 41 TWTVEEVDLHADLADLAKLSPAEQHLVSRLVAFFATGDTIVANNLVLNLYQHINSPEGRL 100
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D+++R
Sbjct: 101 YLSRQLFEEAVHVQFYLNLLDTYVPDEKQR 130
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 44/213 (20%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VT 135
+T LL D + P++Y + +K A + WT EEVDL + +
Sbjct: 8 QTRQLLLDPGMDLTLRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLADLAKLSPAEQHLV 67
Query: 136 NFEIRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKK 175
+ + TG+ +++ N P YL R ++ + Y +
Sbjct: 68 SRLVAFFATGDTIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDE 127
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIF 223
+ +E +P + +KA++ +WI + +F +I FA+ +EG+F
Sbjct: 128 KQRYEAFAAVENIPSIARKAEFCFKWIDSIFELRELKTRADRRAFLLNLICFAACIEGLF 187
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F G+FA +++L+ RG++ GL + RDE +
Sbjct: 188 FYGAFAYVYFLRSRGVLHGLASGTNWVFRDESM 220
>gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
Length = 350
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL KL+ E++ +S ++AFFA D IV NLV Q V E R
Sbjct: 49 TWTVEEVDLHSDLGDLAKLSSAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 108
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ +++ER
Sbjct: 109 YLSRQLFEEAVHVQFYLNLLDTYVPEEKER 138
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 46/210 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDL-------------SKVVVTNFE 138
LL D + P++Y + +K+A + WT EEVDL + +V+
Sbjct: 20 LLLDPGMDLTLRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLGDLAKLSSAERHLVSRL- 78
Query: 139 IRALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGK 178
+ TG+ +++ N P YL R ++ + Y ++ +
Sbjct: 79 VAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEKER 138
Query: 179 ITGGKTIETMPCVKKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIFFSG 226
+E +P + +KA++ RWI + +F +I FA+ +EG+FF G
Sbjct: 139 FAAFAAVENIPSIARKAEFCFRWIDSIFELRELRTQADRRAFLLNLICFAACIEGLFFYG 198
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
+FA +++L+ RGL+ GL + RDE +
Sbjct: 199 AFAYVYFLRSRGLLNGLASGTNWVFRDESM 228
>gi|345001978|ref|YP_004804832.1| ribonucleoside-diphosphate reductase [Streptomyces sp. SirexAA-E]
gi|344317604|gb|AEN12292.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SirexAA-E]
Length = 340
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 128
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ S+
Sbjct: 22 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSN 81
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 82 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVEEIPSI 141
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +W+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 142 REKAQFCFKWMDSVEEIDRLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 201
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 202 LHGLATGTNWVFRDETM-HMN 221
>gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
lividans TK24]
gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
lividans TK24]
Length = 343
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALK------------TGEEKASH 151
P++Y D ++ Y+ A + W EEVDL V ++ ++ TG+ ++
Sbjct: 25 PMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAKLSPMEQHLIGRLVAFFATGDSIVAN 84
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 85 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVENIPSI 144
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 145 REKAEFCFRWMDSVESIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 204
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 205 LHGLATGTNWVFRDETM 221
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T+ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 42 TWHVEEVDLHSDVADLAKLSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 101
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 102 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 131
>gi|365866748|ref|ZP_09406352.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces sp. W007]
gi|364003827|gb|EHM24963.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces sp. W007]
Length = 338
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V + + TG+ S+
Sbjct: 20 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVSDLAKLSPGEQHMIGRLVAFFATGDSIVSN 79
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 80 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVEEIPSI 139
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +W+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 140 REKAQFCFKWMDSVEKIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 199
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 200 LHGLATGTNWVFRDETM-HMN 219
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D+S KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVSDLAKLSPGEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 126
>gi|386845602|ref|YP_006263615.1| ribonucleoside-diphosphate reductase subunit beta [Actinoplanes sp.
SE50/110]
gi|359833106|gb|AEV81547.1| ribonucleoside-diphosphate reductase beta chain [Actinoplanes sp.
SE50/110]
Length = 331
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + DL+ L+ EK+ +S ++AFFA D IV NLV Q V E R
Sbjct: 30 TWTVEEVDLHSDLADLAVLSDAEKHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRL 89
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D+ ER
Sbjct: 90 YLSRQLFEEAVHVQFYLNLLDTYVPDEAER 119
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 44/209 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----VVVTNFE-------I 139
+L D + P++Y + +K A + WT EEVDL V+++ E +
Sbjct: 1 MLLDPGMDLTLRPMKYPHFFDRFKDAIKNTWTVEEVDLHSDLADLAVLSDAEKHLVSRLV 60
Query: 140 RALKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKI 179
TG+ +++ N P YL R ++ + Y + +
Sbjct: 61 AFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEAERF 120
Query: 180 TGGKTIETMPCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGS 227
IE +P + +KA++ +WI + +F VI FA+ +EG+FF G+
Sbjct: 121 EAFAAIENIPSIARKAEFCFKWIDSVFDLRRLETREHRRAFLLNVICFAACIEGLFFYGA 180
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA +++L+ RG++ GL + RDE +
Sbjct: 181 FAYVYFLRSRGVLQGLASGTNWVFRDESM 209
>gi|455647607|gb|EMF26549.1| ribonucleoside-diphosphate reductase [Streptomyces gancidicus BKS
13-15]
Length = 338
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T+ E + D++ KLT +E++ I ++AFFA D IV NLV + + EAR
Sbjct: 37 TWHVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 126
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y D ++ Y+ A + W EEVDL V + + TG+ ++
Sbjct: 20 PMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAKLTPEEQHLIGRLVAFFATGDSIVAN 79
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 80 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 139
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 140 REKAEFCFRWMDSVETIDRLESRSDRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 199
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 200 LHGLATGTNWVFRDETM 216
>gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein
[Streptomyces pristinaespiralis ATCC 25486]
gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein
[Streptomyces pristinaespiralis ATCC 25486]
Length = 340
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 128
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 51/204 (25%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA-------------- 149
P++Y D ++ Y+ A + WT EEVDL V ++ L GE+
Sbjct: 22 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGDSI 78
Query: 150 ---------SHSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y + +E +
Sbjct: 79 VANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVENI 138
Query: 189 PCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKK 236
P +++KA + +W+ D + +R +I FA+ +EG+FF G+FA ++W +
Sbjct: 139 PSIREKASFCFKWMDSVESIDRLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRS 198
Query: 237 RGLMPGLTFSNELISRDEDLSHWN 260
RGL+ GL + RDE + H N
Sbjct: 199 RGLLHGLATGTNWVFRDETM-HMN 221
>gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicolor A3(2)]
gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces coelicolor A3(2)]
gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicolor A3(2)]
Length = 343
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALK------------TGEEKASH 151
P++Y D ++ Y+ A + W EEVDL V ++ ++ TG+ ++
Sbjct: 25 PMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAKLSPMEQHLIGRLVAFFATGDSIVAN 84
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 85 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVENIPSI 144
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 145 REKAEFCFRWMDSVESIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 204
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 205 LHGLATGTNWVFRDETM 221
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T+ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 42 TWHVEEVDLHSDVADLAKLSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 101
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 102 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 131
>gi|357391820|ref|YP_004906661.1| putative ribonucleoside-diphosphate reductase subunit beta
[Kitasatospora setae KM-6054]
gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta
[Kitasatospora setae KM-6054]
Length = 339
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV+ N+V + + EAR
Sbjct: 38 TWTVEEVDLHSDVADLAKLSEGERHMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARL 97
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 98 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 127
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 44/209 (21%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA---------- 141
+L D + P++Y + Y+ A + WT EEVDL V ++
Sbjct: 9 MLLDPGFELTLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVADLAKLSEGERHMIGRLV 68
Query: 142 --LKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKI 179
TG+ S++ N P YL R ++ + Y +
Sbjct: 69 AFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRN 128
Query: 180 TGGKTIETMPCVKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGS 227
+E +P + +KA + +++ ++ +F +I FA+ VEG+FF G+
Sbjct: 129 AAFAAVENIPSIAQKAQFCFKYMNAVDHIDSLRSKEDRRAFLLNLICFAACVEGLFFYGA 188
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FA ++W + RGL+ GL + RDE +
Sbjct: 189 FAYVYWFRSRGLLHGLATGTNWVFRDESM 217
>gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 341
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 40 TWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 99
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 100 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 129
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 23 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVAN 82
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 83 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVENIPSI 142
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +W+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 143 REKASFCFKWMDSVEKLDRLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 202
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 203 LHGLATGTNWVFRDETM 219
>gi|429196106|ref|ZP_19188092.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
ipomoeae 91-03]
gi|428668184|gb|EKX67221.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
ipomoeae 91-03]
Length = 340
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 128
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 22 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVAN 81
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 82 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVENIPSI 141
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + W+ D S +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 142 REKAQFCFTWMDSVEKLDRLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 201
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 202 LHGLATGTNWVFRDETM 218
>gi|418471848|ref|ZP_13041638.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicoflavus ZG0656]
gi|371547525|gb|EHN75895.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicoflavus ZG0656]
Length = 343
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALK------------TGEEKASH 151
P++Y D ++ Y+ A + W EEVDL V ++ ++ TG+ ++
Sbjct: 25 PMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAKLSPMEQHLIGRLVAFFATGDSIVAN 84
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 85 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVENIPSI 144
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 145 REKAEFCFRWMDSVESIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 204
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 205 LHGLATGTNWVFRDETM 221
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T+ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 42 TWHVEEVDLHSDVADLAKLSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 101
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 102 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 131
>gi|389730179|ref|ZP_10189354.1| ribonucleoside-diphosphate reductase [Rhodanobacter sp. 115]
gi|388440951|gb|EIL97271.1| ribonucleoside-diphosphate reductase [Rhodanobacter sp. 115]
Length = 341
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 260 NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMY 319
+K++ +++ I ++AFFA D IV+ NLV Q + EAR + Q+ E +H + Y
Sbjct: 56 SKMSAADRHLIHRLIAFFATGDTIVSNNLVLNLYQHINAPEARMYLSRQLYEEALHVQFY 115
Query: 320 SLLIDTYIKDQEER 333
L+DTYI DQ ER
Sbjct: 116 LTLLDTYIPDQNER 129
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLS-KVVVTNFEIRA------------LKTGEEKAS 150
P++Y + ++MY+ A + WT +EVD S N ++ A TG+ S
Sbjct: 22 PMRYPEFYEMYRNAIKNTWTVDEVDFSLDTTDLNSKMSAADRHLIHRLIAFFATGDTIVS 81
Query: 151 HSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPC 190
++ N P YL R ++ + Y + + IE +P
Sbjct: 82 NNLVLNLYQHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDQNERAKAFSAIENIPS 141
Query: 191 VKKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIFFSGSFASIFWLKKRG 238
++ K ++ +WI + F +I FA+ +EG+FF +FA +++ + RG
Sbjct: 142 IRAKGEFCFKWIDSIQDISRLETRAQRRQFLLNLICFAACIEGMFFFAAFAYVYYFRSRG 201
Query: 239 LMPGLTFSNELISRDE 254
L+ GL + RDE
Sbjct: 202 LLHGLASGTNWVFRDE 217
>gi|398782657|ref|ZP_10546371.1| ribonucleoside-diphosphate reductase [Streptomyces auratus AGR0001]
gi|396996721|gb|EJJ07707.1| ribonucleoside-diphosphate reductase [Streptomyces auratus AGR0001]
Length = 381
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 98/260 (37%), Gaps = 57/260 (21%)
Query: 51 NTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPL-------LRDNPRRFVIF 103
N DL L + ++PI + L+ S L D +
Sbjct: 3 NPSPDLPQALNSVRAGETPIPSTTALRAESPTETNTAAAAHTATTGTKNLLDPGFELTLR 62
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA-------------- 149
P++Y + + Y+ A + WT EEVDL V ++ L GE+
Sbjct: 63 PMRYPEFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGDSI 119
Query: 150 ---------SHSRNEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETM 188
N P YL R ++ + Y + +E +
Sbjct: 120 VANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENI 179
Query: 189 PCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKK 236
P +++KA++ +W+ D S +R +I FA+ +EG+FF G+FA ++W +
Sbjct: 180 PSIREKAEFCFKWMDSVESIDRLESRADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRS 239
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGL+ GL + RDE +
Sbjct: 240 RGLLHGLATGTNWVFRDESM 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 80 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 139
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 140 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 169
>gi|383650825|ref|ZP_09961231.1| Ribonucleoside-diphosphate reductase [Streptomyces chartreusis NRRL
12338]
Length = 335
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 34 TWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 93
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D E+R
Sbjct: 94 YLSRQLFEEAVHVQFYLTLLDTYLPDPEDR 123
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 17 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVAN 76
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 77 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVENIPSI 136
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +W+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 137 REKAGFCFKWMDSVEQLDRLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 196
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 197 LHGLATGTNWVFRDETM 213
>gi|411004498|ref|ZP_11380827.1| ribonucleoside-diphosphate reductase [Streptomyces globisporus
C-1027]
Length = 339
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ S+
Sbjct: 21 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSN 80
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 81 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVEEIPSI 140
Query: 192 KKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +W+ + F +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 141 REKAQFCFKWMDSVEKIERLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 200
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 201 LHGLATGTNWVFRDETM-HMN 220
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 38 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 97
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 98 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 127
>gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
griseoaurantiacus M045]
gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
griseoaurantiacus M045]
Length = 347
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T+ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 46 TWHVEEVDLHSDVADLAKLTPAERHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 105
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 106 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 135
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV-----VTNFE-------IRALKTGEEKASH 151
P++Y D ++ Y+ A + W EEVDL V +T E + TG+ ++
Sbjct: 29 PMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAKLTPAERHLIGRLVAFFATGDSIVAN 88
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 89 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 148
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ RW+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 149 REKAEFCFRWMDSVERLDRLETRSDRRRFLLNLICFAACIEGLFFYGAFAYVYWFRGRGL 208
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 209 LHGLATGTNWVFRDETM 225
>gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces roseosporus NRRL 11379]
gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
roseosporus NRRL 15998]
gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
roseosporus NRRL 15998]
Length = 338
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 45/201 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ S+
Sbjct: 20 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSN 79
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 80 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVEEIPSI 139
Query: 192 KKKADWALRWIAD-----------EASSFGERVIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA + +W+ + F +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 140 REKAQFCFKWMDSVEKIERLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 199
Query: 240 MPGLTFSNELISRDEDLSHWN 260
+ GL + RDE + H N
Sbjct: 200 LHGLATGTNWVFRDETM-HMN 219
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV+ NLV + + EAR
Sbjct: 37 TWTVEEVDLHSDVADLAKLSPGEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARL 96
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 97 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 126
>gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
griseoflavus Tu4000]
gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
griseoflavus Tu4000]
Length = 341
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T+ E + D++ KL+ +E++ I ++AFFA D IV NLV + + EAR
Sbjct: 40 TWHVEEVDLHSDVADLAKLSPEEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 99
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 100 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 129
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 44/214 (20%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA----- 141
V+T L D + P++Y D ++ Y+ A + W EEVDL V ++
Sbjct: 6 VKTTKNLLDPGFELTLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAKLSPEEQHL 65
Query: 142 -------LKTGEEKASHSR--------NEP----YLFR--------IKLAPGGICRYKVK 174
TG+ +++ N P YL R ++ + Y
Sbjct: 66 IGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPD 125
Query: 175 KGGKITGGKTIETMPCVKKKADWALRWI-----ADEASSFGER------VIAFAS-VEGI 222
+ +E +P +++KA++ RW+ D + +R +I FA+ +EG+
Sbjct: 126 PDDRAAAFAAVENIPSIREKAEFCFRWMDSVEKLDRLETQADRRRFLLNLICFAACIEGL 185
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
FF G+FA ++W + RGL+ GL + RDE +
Sbjct: 186 FFYGAFAYVYWFRGRGLLHGLATGTNWVFRDETM 219
>gi|426403937|ref|YP_007022908.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860605|gb|AFY01641.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 45/198 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVV------TNFE---IRAL----KTGEEKAS 150
P++Y ++MYK + WT +EVD S +V T E IR L TG+
Sbjct: 13 PMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSKMTESEKHLIRRLVAFFATGDSIVG 72
Query: 151 HSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPC 190
++ N P YL R ++ + Y + +E +P
Sbjct: 73 NNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAVENIPS 132
Query: 191 VKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGSFASIFWLKKRG 238
+KKKAD+ +WI ++ F +I FA+ VEG+FF +FA +++L+ +G
Sbjct: 133 IKKKADFCYKWIDSINELNELKTIEDRRRFLMNLICFATCVEGLFFYAAFAYVYFLRSKG 192
Query: 239 LMPGLTFSNELISRDEDL 256
L+ GL + RDE +
Sbjct: 193 LLAGLASGTNWVFRDESM 210
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 260 NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMY 319
+K+T EK+ I ++AFFA D IV NLV + V E R + Q+ E +H + Y
Sbjct: 47 SKMTESEKHLIRRLVAFFATGDSIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFY 106
Query: 320 SLLIDTYIKDQEER 333
L+D YI + +ER
Sbjct: 107 LTLLDNYIPNPDER 120
>gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus HD100]
gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus HD100]
Length = 336
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 45/198 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVV------TNFE---IRAL----KTGEEKAS 150
P++Y ++MYK + WT +EVD S +V T E IR L TG+
Sbjct: 17 PMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSKMTESEKHLIRRLVAFFATGDSIVG 76
Query: 151 HSR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPC 190
++ N P YL R ++ + Y + +E +P
Sbjct: 77 NNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAVENIPS 136
Query: 191 VKKKADWALRWI-----------ADEASSFGERVIAFAS-VEGIFFSGSFASIFWLKKRG 238
+KKKAD+ +WI ++ F +I FA+ VEG+FF +FA +++L+ +G
Sbjct: 137 IKKKADFCYKWIDSINELTELNTIEDRRRFLMNLICFATCVEGLFFYAAFAYVYFLRSKG 196
Query: 239 LMPGLTFSNELISRDEDL 256
L+ GL + RDE +
Sbjct: 197 LLAGLASGTNWVFRDESM 214
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 260 NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMY 319
+K+T EK+ I ++AFFA D IV NLV + V E R + Q+ E +H + Y
Sbjct: 51 SKMTESEKHLIRRLVAFFATGDSIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFY 110
Query: 320 SLLIDTYIKDQEER 333
L+D YI + +ER
Sbjct: 111 LTLLDNYIPNPDER 124
>gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
ghanaensis ATCC 14672]
gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
ghanaensis ATCC 14672]
Length = 340
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRA------------LKTGEEKASH 151
P++Y D ++ Y+ A + WT EEVDL V ++ TG+ ++
Sbjct: 22 PMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVAN 81
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 82 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 141
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ W+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 142 REKAEFCFTWMDSVEKLDRLQTQADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 201
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 202 LHGLATGTNWVFRDETM 218
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T++ E + D++ KL+ E++ I ++AFFA D IV NLV + + EAR
Sbjct: 39 TWTVEEVDLHSDVADLAKLSPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 98
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 99 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 128
>gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. e14]
gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. e14]
Length = 339
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 244 TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARC 303
T+ E + D++ KLT E++ I ++AFFA D IV NLV + + EAR
Sbjct: 38 TWHVEEVDLHSDVADLAKLTPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARL 97
Query: 304 FYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+ Q+ E VH + Y L+DTY+ D ++R
Sbjct: 98 YLSRQLFEEAVHVQFYLTLLDTYLPDPDDR 127
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 44/197 (22%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------VTNFEIRALKTGEEKASH 151
P++Y D ++ Y+ A + W EEVDL V + + TG+ ++
Sbjct: 21 PMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAKLTPGEQHLIGRLVAFFATGDSIVAN 80
Query: 152 SR--------NEP----YLFR--------IKLAPGGICRYKVKKGGKITGGKTIETMPCV 191
+ N P YL R ++ + Y + +E +P +
Sbjct: 81 NLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVENIPSI 140
Query: 192 KKKADWALRWI-----ADEASSFGER------VIAFAS-VEGIFFSGSFASIFWLKKRGL 239
++KA++ W+ D + +R +I FA+ +EG+FF G+FA ++W + RGL
Sbjct: 141 REKAEFCFTWMDSVEKLDRLETRADRRRFLLNLICFAACIEGLFFYGAFAYVYWFRSRGL 200
Query: 240 MPGLTFSNELISRDEDL 256
+ GL + RDE +
Sbjct: 201 LHGLATGTNWVFRDETM 217
>gi|50404173|gb|AAT76849.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
Length = 324
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 46/245 (18%)
Query: 71 KDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
K++ ++V Q N E +L++N R+V+FPI+Y+ W YK+ E+ FWTAE+ +
Sbjct: 3 KEQYHDQEVLLEAQNNDE---ILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFD 59
Query: 131 K------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVK--- 174
K + N ++ L EE+A + + I P G +C +
Sbjct: 60 KDKQYLENIDKNMLVKDLHVYEEQALITSK---MLDIIQIPEGRAFYGFQMCMENIHDEV 116
Query: 175 ------------KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222
K ++ K IE + V KK W + + V+ + S +
Sbjct: 117 YACIFETYIPDSKQKRVIINKVIE-LDSVLKKQKWLTEIFESNIPYYNKLVLLYIS--KV 173
Query: 223 FFSGSFASIF-WLKKRGLMPGLTFSNELISRDEDLS------HWNKLTRDEKYFISHVLA 275
F+G+ + + K+ ++P L +E I RDE L N L KY HVL
Sbjct: 174 LFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLVNKLKY--EHVLD 231
Query: 276 FFAAS 280
+F +
Sbjct: 232 YFKMA 236
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 296 VQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+QI E R FYGFQ+ MEN+H E+Y+ + +TYI D +++
Sbjct: 94 IQIPEGRAFYGFQMCMENIHDEVYACIFETYIPDSKQK 131
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,274,248,890
Number of Sequences: 23463169
Number of extensions: 216734269
Number of successful extensions: 515969
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 335
Number of HSP's that attempted gapping in prelim test: 510936
Number of HSP's gapped (non-prelim): 4863
length of query: 333
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 190
effective length of database: 9,003,962,200
effective search space: 1710752818000
effective search space used: 1710752818000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)