BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4797
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 125/227 (55%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASF- 121
SK + +D + L+ AP +VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASF
Sbjct: 45 SKAARRIFQDSAELES-KAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 122 -------------WTAEEVD----LSKVV--------VTNFEIRALKTGEEKASHSRNEP 156
W A + D +S V+ + N + + E + + +R
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-F 162
Query: 157 YLFRI-------KLAPGGICRYKVXXXXXXXXXXXXETMPCVKKKADWALRWIADEASSF 209
Y F+I ++ I Y ETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VE WLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFY
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFY 163
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 164 GFQIAMENIHSEMYSLLIDTYIKDPKER 191
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 46 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 105
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 106 GFQIAMENIHSEMYSLLIDTYIKDPKER 133
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 55/71 (77%)
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTF 245
ETMPCVKKKADWALRWI D+ +++GERV+AFA+VE WLKKRG MPGLTF
Sbjct: 141 ETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGPMPGLTF 200
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 201 SNELISRDEGL 211
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 49/57 (85%), Gaps = 3/57 (5%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
++ + +AP VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 1 SMTKAAAP---GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSK 54
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 39 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 98
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 99 GFQIAMENIHSEMYSLLIDTYIKDPKER 126
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 56/71 (78%)
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTF 245
ETMPCVKKKADWALRWI D+ +++GERV+AFA+VE WLKKRGLMPGLTF
Sbjct: 134 ETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 193
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 194 SNELISRDEGL 204
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 43/46 (93%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 2 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSK 47
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 102/199 (51%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASF--------------WTAEEVDLSKVVVT 135
EPLLR + RRFVIFPIQY DIWKMYK+A+ASF W + D +
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 136 NFEIRALKTG------EEKASHSRNEP-----YLFRI-------KLAPGGICRYKVXXXX 177
A G E+ S P Y F+I ++ I Y
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 178 XXXXXXXXETMPCVKKKADWALRWIADEASSFGERVIAFASVEXXXXXXXXXXXXWLKKR 237
ETMP VKKKADWALRWIAD S+FGERV+AFA+VE WLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 71 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 130
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 131 QILIENVHSEMYSLLIDTYIRDPKKR 156
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 102/199 (51%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASF--------------WTAEEVDLSKVVVT 135
EPLLR + RRFVIFPIQY DIWKMYK+A+ASF W + D +
Sbjct: 36 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 95
Query: 136 NFEIRALKTG------EEKASHSRNEP-----YLFRI-------KLAPGGICRYKVXXXX 177
A G E+ S P Y F+I ++ I Y
Sbjct: 96 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 155
Query: 178 XXXXXXXXETMPCVKKKADWALRWIADEASSFGERVIAFASVEXXXXXXXXXXXXWLKKR 237
ETMP VKKKADWALRWIAD S+FGERV+AFA+VE WLKKR
Sbjct: 156 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 215
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 216 GLMPGLTFSNELISRDEGL 234
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 56 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 115
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSE YSLLIDTYI+D ++R
Sbjct: 116 QILIENVHSEXYSLLIDTYIRDPKKR 141
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 53/71 (74%)
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTF 245
ET P VKKKADWALRWIAD S+FGERV+AFA+VE WLKKRGL PGLTF
Sbjct: 149 ETXPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLXPGLTF 208
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 209 SNELISRDEGL 219
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 38/42 (90%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLLR + RRFVIFPIQY DIWK YK+A+ASFWTAEEVDLSK
Sbjct: 21 EPLLRKSSRRFVIFPIQYPDIWKXYKQAQASFWTAEEVDLSK 62
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
Length = 399
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEA---------------------------------SFWTAEEVDLSKVVVTNFEI 139
YK+AEA +F+ A + +++ +V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVXXXXXXXXXXXXE-------TMPCVK 192
++ E K+ Y F+I + Y + E T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+E WLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 131 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 190
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 191 FQIMIENIHSETYSLLIDTYIKDPKE 216
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 130/292 (44%), Gaps = 53/292 (18%)
Query: 8 FTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSD 67
P H T + + ++ L+ + +N +K +++ + KLS
Sbjct: 14 LVPRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVK---SDMLKEKLSK 70
Query: 68 SPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEAS---- 120
K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+ YK+AEAS
Sbjct: 71 DAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTA 130
Query: 121 -----------------------------FWTAEEVDLSKVVVTNFEIRALKTGEEKASH 151
F+ A + +++ +V NF ++ E K+
Sbjct: 131 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTE-VQIPEAKSF- 188
Query: 152 SRNEPYLFRIKLAPGGICRYKVXXXXXXXXXXXXE-------TMPCVKKKADWALRWIAD 204
Y F+I + Y + E T+P + +KA+WALRWI D
Sbjct: 189 -----YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD 243
Query: 205 EASSFGERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEDL 256
+ FGER++AFAS+E WLKKRG+MPGLTFSNELI RDE L
Sbjct: 244 ADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGL 295
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F ++V+ITEA+ FY F
Sbjct: 65 EEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAF 124
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 125 QIAVENIHSETYSLLIDNYIKDEKER 150
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 100/230 (43%), Gaps = 46/230 (20%)
Query: 65 LSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA 124
+S PI K K+ S + E +L RF ++PI Y D+W YKKAEASFWTA
Sbjct: 6 ISKIPIFSKKE-KKFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTA 64
Query: 125 EEVDLSK----------------------------VVVTNFE---IRALKTGEEKASHSR 153
EE+DLS +V+ N +R +K E K
Sbjct: 65 EEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAK----- 119
Query: 154 NEPYLFRIKLAPGG-------ICRYKVXXXXXXXXXXXXETMPCVKKKADWALRWIADEA 206
+ Y F+I + I Y E +P VK KA WA +WI D
Sbjct: 120 -KFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIND-T 177
Query: 207 SSFGERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEDL 256
+SF ER++A A VE W KK+ + GLTFSNELISRDE L
Sbjct: 178 NSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGL 227
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F +EV+I EA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIKDEKER 151
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------K 131
E +L RF + PI Y ++W YKKAEASFWTAEE+DLS K
Sbjct: 30 NEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIK 89
Query: 132 VVVTNFEIRALKTGEEKASHSRNEP--------YLFRIKLAPGG-------ICRYKVXXX 176
V+ F E AS E Y F+I + I Y
Sbjct: 90 HVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEK 149
Query: 177 XXXXXXXXXETMPCVKKKADWALRWIADEASSFGERVIAFASVEXXXXXXXXXXXXWLKK 236
E +P +K KA WA +WI D +SF ER++A A VE W KK
Sbjct: 150 ERLNLFHAIENIPAIKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFCAIFWFKK 208
Query: 237 RGLMPGLTFSNELISRDEDL 256
+ + GLTFSNELISRDE L
Sbjct: 209 QNKLHGLTFSNELISRDEGL 228
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
Length = 345
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 53/221 (23%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV------- 127
T ++ ++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE+
Sbjct: 10 TFQKERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTE 69
Query: 128 ------DLSKVVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLA----- 164
D K + N ++ + E S P Y F+I +
Sbjct: 70 DFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSE 129
Query: 165 ------------PGGICRYKVXXXXXXXXXXXXETMPCVKKKADWALRWIADEASSFGER 212
P I +K +P VK KA + RWI+++ S + ER
Sbjct: 130 VYSMMVDAFFKDPKNIPLFK-----------EIANLPEVKHKAAFIERWISNDDSLYAER 178
Query: 213 VIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRD 253
++AFA+ E WL + +MPGL +N I RD
Sbjct: 179 LVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRD 219
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + KLT D+K +I ++LA +SD +VN+ L+E F+ ++Q E + FYGF
Sbjct: 60 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN++SE+YS+++D + KD
Sbjct: 120 QIMMENIYSEVYSMMVDAFFKD 141
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +D +L ++L+ DE+ I L FF+ ++ +V N+V + V EAR + Q
Sbjct: 58 MGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQA 117
Query: 310 AMENVHSEMYSLLIDTYIKDQEE 332
E VH+ Y + ++ D++E
Sbjct: 118 FEEAVHTHTYLYICESLGLDEKE 140
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8G|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
Length = 366
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +D +L ++L+ DE+ I L FF+ ++ +V N+V + V EAR + Q
Sbjct: 78 MGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQA 137
Query: 310 AMENVHSEMYSLLIDTYIKDQEE 332
E VH+ + + ++ D++E
Sbjct: 138 FEEAVHTHTFLYICESLGLDEKE 160
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
Length = 346
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
+ +D +L ++L+ DE+ I L FF+ ++ +V N+V + V EAR + Q
Sbjct: 58 MGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQA 117
Query: 310 AMENVHSEMYSLLIDTYIKDQEE 332
E VH+ + + ++ D++E
Sbjct: 118 FEEAVHTHTFLYICESLGLDEKE 140
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 66 SDSPIKDKSTLKQVSAPVQENVETEPL--LRDNPRRFVIF----------PIQYQDIWKM 113
SD P D K ++A + VETE L LR +P+ +F P + W +
Sbjct: 393 SDGPSGDIYYDKGLTAAQRARVETEALKYLRAHPQVQTVFTKAEIAATPSPSGPPESWSL 452
Query: 114 YKKAEASFWTAEEVDL 129
++A ASF+ + DL
Sbjct: 453 IQEARASFYPSRSGDL 468
>pdb|1WP1|A Chain A, Crystal Structure Of The Drug-Discharge Outer Membrane
Protein, Oprm
pdb|1WP1|B Chain B, Crystal Structure Of The Drug-Discharge Outer Membrane
Protein, Oprm
Length = 474
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 32 DFGSGGWWFEPNINL 46
D GSG W F+P+INL
Sbjct: 318 DAGSGSWLFQPSINL 332
>pdb|3D5K|A Chain A, Crystal Structure Of The Oprm Channel In A Non-Symmetrical
Space Group
pdb|3D5K|B Chain B, Crystal Structure Of The Oprm Channel In A Non-Symmetrical
Space Group
pdb|3D5K|C Chain C, Crystal Structure Of The Oprm Channel In A Non-Symmetrical
Space Group
Length = 474
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 32 DFGSGGWWFEPNINL 46
D GSG W F+P+INL
Sbjct: 318 DAGSGSWLFQPSINL 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,166,940
Number of Sequences: 62578
Number of extensions: 335007
Number of successful extensions: 941
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 50
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)