BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4797
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus
norvegicus GN=Rrm2 PE=2 SV=1
Length = 390
Score = 208 bits (529), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/227 (51%), Positives = 143/227 (62%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
SK + +D + L+ AP + ++E EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45 SKAARRIFQDSAELES-KAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
TAEEVDLSK + + N + + E + + +R
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-F 162
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I K IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSKER 191
>sp|P11157|RIR2_MOUSE Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus
GN=Rrm2 PE=1 SV=1
Length = 390
Score = 207 bits (527), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 142/227 (62%), Gaps = 35/227 (15%)
Query: 63 SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
SK + +D + L+ AP +VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45 SKAARRIFQDSAELES-KAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
TAEEVDLSK + + N + + E + + +R
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCF- 162
Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
Y F+I + Y + I K IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDPKER 191
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus
auratus GN=RRM2 PE=2 SV=1
Length = 386
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 142/234 (60%), Gaps = 43/234 (18%)
Query: 65 LSDSPIKDKSTLKQVSAPVQE---------NVETEPLLRDNPRRFVIFPIQYQDIWKMYK 115
LS +P+ +++ V E +VE EPLLR+NPRRFV+FPI+Y DIWKMYK
Sbjct: 37 LSATPVLASKVARRILQDVAEPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYK 96
Query: 116 KAEASFWTAEEVDLSKVV--------------------------VTNFEIRALKTGEEKA 149
KAEASFWTAEEVDLSK + + N + + E +
Sbjct: 97 KAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQV 156
Query: 150 SHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWI 202
+ +R Y F+I + Y + I K IETMPCVKKKADWALRWI
Sbjct: 157 TEARCF-YGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI 215
Query: 203 ADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
D+ +++GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 216 GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 106 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 165
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 166 QIAMENIHSEMYSLLIDTYIKDSKER 191
>sp|P07201|RIR2_SPISO Ribonucleoside-diphosphate reductase small chain OS=Spisula
solidissima PE=2 SV=2
Length = 384
Score = 201 bits (511), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/242 (49%), Positives = 148/242 (61%), Gaps = 43/242 (17%)
Query: 49 PQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPV-QENVETEPLLRDNPRRFVIFPIQY 107
P+ L ++TN Q+S K+ LKQ PV +++ + EPLL DNPRRFV+ PIQY
Sbjct: 28 PKKVLGEITN-FQRST-------QKTPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQY 79
Query: 108 QDIWKMYKKAEASFWTAEEVDLSKVV--------------------------VTNFEIRA 141
DIWKMYKKAEASFWTAEEVDLSK + + N +
Sbjct: 80 HDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVE 139
Query: 142 LKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKK 194
+ E + + +R Y F+I + Y + I + IETMPCVK+K
Sbjct: 140 RFSKEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEK 198
Query: 195 ADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
ADWA+RWI D++SS+ ERV+AFA+VEGIFFSGSFASIFWLKKRG+MPGLTFSNELISRDE
Sbjct: 199 ADWAMRWINDDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDE 258
Query: 255 DL 256
L
Sbjct: 259 GL 260
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 78/86 (90%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++HW L ++EK+FISHVLAFFAASDGIVNENLVERF++EVQ+TEARCFYGF
Sbjct: 97 EEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGF 156
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 157 QIAMENIHSEMYSLLIDTYIKDPQER 182
>sp|P31350|RIR2_HUMAN Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens
GN=RRM2 PE=1 SV=1
Length = 389
Score = 201 bits (511), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 135/212 (63%), Gaps = 37/212 (17%)
Query: 78 QVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---- 133
+ +AP VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 61 KAAAP---GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE 117
Query: 134 ----------------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRY 171
+ N + + E + + +R Y F+I + Y
Sbjct: 118 SLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMY 176
Query: 172 KVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
+ I K IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 177 SLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 236
Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 237 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 268
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDPKER 190
>sp|Q4R7Q7|RIR2_MACFA Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca
fascicularis GN=RRM2 PE=2 SV=1
Length = 389
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 131/203 (64%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 67 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYF 126
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + + E + + +R Y F+I + Y + I
Sbjct: 127 ISHVLAFFAASDGIVNENLVERFSQEVQITEARCF-YGFQIAMENIHSEMYSLLIDTYIK 185
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCV+KKADWALRWI D+ +++GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 186 DPKEREFLFNAIETMPCVEKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFW 245
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 246 LKKRGLMPGLTFSNELISRDEGL 268
Score = 147 bits (372), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + +D+ HW L +E+YFISHVLAFFAASDGIVNENLVERF+QEVQITEARCFY
Sbjct: 103 TAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFY 162
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 163 GFQIAMENIHSEMYSLLIDTYIKDPKER 190
>sp|P79733|RIR2_DANRE Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio
GN=rrm2 PE=1 SV=1
Length = 386
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 128/203 (63%), Gaps = 34/203 (16%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------- 133
VE EPLL++NP RFVIFPIQY DIW+MYKKAEASFWTAEEVDLSK +
Sbjct: 64 VEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYF 123
Query: 134 -------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+ N + T E + + +R Y F+I + Y + I
Sbjct: 124 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARC-FYGFQIAMENIHSEMYSLLIDTYIK 182
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IETMPCVKKKADWAL WI D+ + +GERV+AFA+VEGIFFSGSFASIFW
Sbjct: 183 DSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGIFFSGSFASIFW 242
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGL 265
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HW+ L +E+YFISHVLAFFAASDGIVNENLVERFTQEVQ+TEARCFYGF
Sbjct: 102 EEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGF 161
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct: 162 QIAMENIHSEMYSLLIDTYIKDSKER 187
>sp|P48592|RIR2_DROME Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila
melanogaster GN=RnrS PE=1 SV=2
Length = 393
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 144/253 (56%), Gaps = 47/253 (18%)
Query: 50 QNTLKDLTNNLQQSKLSDSP----IKDKSTLKQVSAPVQENVET---------EPLLRDN 96
+ L D TNN+++ + K+ ST+ + +E EPLLR+N
Sbjct: 21 KKILTDSTNNVRKMSIGHEANGQLAKESSTVNGIGKSANSLMEKSVTPFDPSLEPLLREN 80
Query: 97 PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV----------------------- 133
PRRFVIFPIQY DIW+MYKKAEASFWT EEVDLSK +
Sbjct: 81 PRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAA 140
Query: 134 ---VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG-------K 183
+ N + + E + + +R Y F+I + Y V I
Sbjct: 141 SDGIVNENLVERFSQEVQITEARC-FYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFN 199
Query: 184 TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGL 243
IETMP VK+KADWAL WI+ ++++FGER+IAFA+VEGIFFSGSFASIFWLKKRGLMPGL
Sbjct: 200 AIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGL 259
Query: 244 TFSNELISRDEDL 256
TFSNELISRDE L
Sbjct: 260 TFSNELISRDEGL 272
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL+ W++L DE++FISHVLAFFAASDGIVNENLVERF+QEVQITEARCFYGF
Sbjct: 109 EEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 168
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMENVHSEMYS+LIDTYI+D +R
Sbjct: 169 QIAMENVHSEMYSVLIDTYIRDPHQR 194
>sp|Q6PEE3|RIR2B_MOUSE Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus
GN=Rrm2b PE=1 SV=1
Length = 351
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 133/218 (61%), Gaps = 41/218 (18%)
Query: 77 KQVSAPVQENV---ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV 133
+Q+ + +ENV EPLLR + RRFVIFPIQY DIW+MYK+A+ASFWTAEEVDLSK +
Sbjct: 16 EQLCSETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDL 75
Query: 134 VTNFEIRALKTGE-----------------------EKASHSRNEP-----YLFRIKLAP 165
LK+ E E+ S P Y F+I +
Sbjct: 76 P---HWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 132
Query: 166 GGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFAS 218
Y + I K IETMP VKKKADWALRWIAD S+FGERV+AFA+
Sbjct: 133 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAA 192
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
VEGIFFSGSFA+IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 193 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>sp|Q4R741|RIR2B_MACFA Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca
fascicularis GN=RRM2B PE=2 SV=1
Length = 351
Score = 188 bits (477), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEGIFFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>sp|Q5R9G0|RIR2B_PONAB Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii
GN=RRM2B PE=2 SV=1
Length = 351
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>sp|Q7LG56|RIR2B_HUMAN Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens
GN=RRM2B PE=1 SV=1
Length = 351
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 32/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-----------------V 132
EPLLR + RRFVIFPIQY DIWKMYK+A+ASFWTAEEVDLSK
Sbjct: 32 EPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISH 91
Query: 133 VVTNFEIRALKTGE---EKASHSRNEP-----YLFRIKLAPGGICRYKVKKGGKITGGK- 183
++ F E E+ S P Y F+I + Y + I K
Sbjct: 92 ILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKK 151
Query: 184 ------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
IETMP VKKKADWALRWIAD S+FGERV+AFA+VEG+FFSGSFA+IFWLKKR
Sbjct: 152 REFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKR 211
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 212 GLMPGLTFSNELISRDEGL 230
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL HWNKL DEKYFISH+LAFFAASDGIVNENLVERF+QEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI +ENVHSEMYSLLIDTYI+D ++R
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKKR 152
>sp|Q9C167|RIR2_NEUCR Ribonucleoside-diphosphate reductase small chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-2 PE=3 SV=2
Length = 410
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 136/228 (59%), Gaps = 46/228 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EPLL +NP+RFV+FPI+Y +IW+MYKKAEASFWTAEE+DLSK +
Sbjct: 77 EPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFIS 136
Query: 134 -----------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG-------ICRYKVKK 175
+ N + +GE + +R Y F+I + I Y +
Sbjct: 137 HILAFFAASDGIVNENLVERFSGEVQIPEARC-FYGFQIMMENIHSETYSLLIDTYIKEP 195
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
+ I+T+PC++KKADWALRWI D++S+F +R++AFA+VEGIFFSG+FASIFWLK
Sbjct: 196 SQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAFAAVEGIFFSGAFASIFWLK 255
Query: 236 KRGLMPGLTFSNELISRDEDL---------SHWNKLTRDEKYFISHVL 274
KRGLMPGLTFSNELISRDE L SH N R K I ++
Sbjct: 256 KRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN--NRPSKQLIQEII 301
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL WN +L DEK+FISH+LAFFAASDGIVNENLVERF+ EVQI EARCFYG
Sbjct: 112 EEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYG 171
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI MEN+HSE YSLLIDTYIK+ +R
Sbjct: 172 FQIMMENIHSETYSLLIDTYIKEPSQR 198
>sp|P29883|RIR2_VACCP Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain L-IVP) GN=F14 PE=2 SV=1
Length = 319
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKVTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y FR+ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFRMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNK+T DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKVTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
++A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 RMAIENIHSEMYSLLIDTYVKDSNEK 122
>sp|O57175|RIR2_VACCA Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Ankara) GN=MVA032L PE=2 SV=1
Length = 319
Score = 177 bits (449), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>sp|P11158|RIR2_VACCW Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Western Reserve) GN=VACWR043 PE=2 SV=1
Length = 319
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+SK +
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + E + + +R Y F++ ++ I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARC-FYGFQMAIENIHSEMYSLLIDTYVKDSN 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKK
Sbjct: 121 EKNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>sp|P20493|RIR2_VACCC Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Copenhagen) GN=F4L PE=2 SV=1
Length = 319
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS-----------------KV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFWT EEVD+S K
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>sp|Q6Y657|RIR2B_ARATH Putative ribonucleoside-diphosphate reductase small chain B
OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1
Length = 333
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 119/203 (58%), Gaps = 40/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EP+L P RF +FPIQY IW+MYKKAEASFWTAEEVDLS+
Sbjct: 7 EPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIK 66
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + + S +R Y F+I + Y + I
Sbjct: 67 HVLAFFAASDGIVLENLSTRFM--SDVQISEAR-AFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IET+PCV KKA+WA++WI + + SF ER++AFA VEGIFFSGSF SIFW
Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWI-NGSQSFAERIVAFACVEGIFFSGSFCSIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGL 205
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W N LT DE++FI HVLAFFAASDGIV ENL RF +VQI+EAR FYG
Sbjct: 42 EEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSEMYSLL+DTYIKD +ER
Sbjct: 102 FQIAIENIHSEMYSLLLDTYIKDNKER 128
>sp|P33799|RIR2_VAR67 Ribonucleoside-diphosphate reductase small chain OS=Variola virus
(isolate Human/India/Ind3/1967) GN=C8L PE=2 SV=1
Length = 319
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 110/199 (55%), Gaps = 33/199 (16%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW-----------------TAEEVDLSKV 132
EP+L NP RFVIFPIQY DIW MYKKAEASFW T +E K
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKH 61
Query: 133 VVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG---------------ICRYKVKKGG 177
V+ F E A E + + G I Y
Sbjct: 62 VLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNE 121
Query: 178 KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKR 237
K IETMPCVKKKADWA +WI D A +GER+IAFA+VEGIFFSGSFASIFWLKKR
Sbjct: 122 KNYLFNAIETMPCVKKKADWAQKWIHDSAG-YGERLIAFAAVEGIFFSGSFASIFWLKKR 180
Query: 238 GLMPGLTFSNELISRDEDL 256
GLMPGLTFSNELISRDE L
Sbjct: 181 GLMPGLTFSNELISRDEGL 199
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ WNKLT DEKYFI HVLAFFAASDGIVNENL ERF EVQITEARCFYGF
Sbjct: 37 EEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTY+KD E+
Sbjct: 97 QMAIENIHSEMYSLLIDTYVKDSNEK 122
>sp|Q9LSD0|RIR2C_ARATH Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis
thaliana GN=TSO2 PE=2 SV=1
Length = 332
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 117/203 (57%), Gaps = 40/203 (19%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL P RF +FPI Y IW+MYKKAEASFWTAEEVDLS+
Sbjct: 7 EPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIK 66
Query: 132 -----------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKIT 180
+V+ N R + + + S +R Y F+I + Y + I
Sbjct: 67 HVLAFFAASDGIVLENLASRFM--SDVQVSEAR-AFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 181 GGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
K IET+PCV KKA WA++WI D + +F ER+IAFA VEGIFFSGSF SIFW
Sbjct: 124 DNKERDHLFRAIETIPCVAKKAQWAMKWI-DGSQTFAERIIAFACVEGIFFSGSFCSIFW 182
Query: 234 LKKRGLMPGLTFSNELISRDEDL 256
LKKRGLMPGLTFSNELISRDE L
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGL 205
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E + +D W N L E++FI HVLAFFAASDGIV ENL RF +VQ++EAR FYG
Sbjct: 42 EEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYG 101
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQIA+EN+HSEMYSLL+DTYIKD +ER
Sbjct: 102 FQIAIENIHSEMYSLLLDTYIKDNKER 128
>sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain OS=Nicotiana
tabacum PE=2 SV=1
Length = 329
Score = 164 bits (415), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 119/205 (58%), Gaps = 39/205 (19%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
+ EPLL +P RF +FPIQY IW+MYKKA ASFWTAEEVDLS
Sbjct: 4 IPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGERHF 63
Query: 132 -------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGK 178
+V+ N R +K E + + +R Y F+I + Y +
Sbjct: 64 ITHVLAFFAASDGIVLENLAGRFMK--EVQVAEARA-FYGFQIAIENIHSEMYSLLLESY 120
Query: 179 ITGG-------KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I + +ET PCV+KKA WALRWI D + +F ER++AFA VEGIFFSGSF +I
Sbjct: 121 IKDSDEKSRLFRAVETNPCVEKKAKWALRWI-DGSETFAERLVAFACVEGIFFSGSFCAI 179
Query: 232 FWLKKRGLMPGLTFSNELISRDEDL 256
FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 180 FWLKKRGLMPGLTFSNELISRDEGL 204
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 246 SNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
+ E + D HW LT E++FI+HVLAFFAASDGIV ENL RF +EVQ+ EAR FY
Sbjct: 40 TAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFY 99
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEER 333
GFQIA+EN+HSEMYSLL+++YIKD +E+
Sbjct: 100 GFQIAIENIHSEMYSLLLESYIKDSDEK 127
>sp|P36603|RIR2_SCHPO Ribonucleoside-diphosphate reductase small chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suc22 PE=3 SV=2
Length = 391
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 118/206 (57%), Gaps = 33/206 (16%)
Query: 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT-------- 135
+E+ E +LR NP RFV+FPI+Y +IW+ YKKAEASFWTAEE+DLSK +V
Sbjct: 60 KEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNKLNAD 119
Query: 136 -NFEIRALKTGEEKASHSRNEPYLFRIK---LAPGGICRYKVKKGGKITGGKT------- 184
+ I + + NE L R P C Y + + +T
Sbjct: 120 ERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDT 179
Query: 185 --------------IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
I TM +K KA WALRWI DE S++ R++AFA+VEGIFFSGSFAS
Sbjct: 180 YIREPKEKQRHFDAILTMGSIKAKAKWALRWINDEDSTYAIRLVAFAAVEGIFFSGSFAS 239
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDL 256
IFWLKKRGLMPGLTFSNELI RDE L
Sbjct: 240 IFWLKKRGLMPGLTFSNELICRDEGL 265
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +DL W NKL DE+YFIS VLA+FAASDGIVNENL+ERF+ EVQI EARC YG
Sbjct: 101 EEIDLSKDLVDWDNKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYG 160
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLL+DTYI++ +E+
Sbjct: 161 FQIMIENIHSETYSLLLDTYIREPKEK 187
>sp|P32209|RIR2_SWPVK Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus
(strain Kasza) GN=C14L PE=3 SV=1
Length = 274
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 120/200 (60%), Gaps = 35/200 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
EP+L+++ RFVIFPI+Y DIWKMYK++ ASFWT EEVDLSK +
Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKH 61
Query: 134 ----------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGGICRYKVKKG 176
+ N + + + S +R Y F+I ++ I Y
Sbjct: 62 ILAFFASSDGIVNENLAERFYVDVQCSEARC-FYGFQIAMENIHSEMYSLLIDTYVRDNI 120
Query: 177 GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKK 236
K+ IETM CVKKKADWA +WI+ +GERV+AFA+VEGIFFSGSFA+IFW+KK
Sbjct: 121 EKMHLFNAIETMECVKKKADWARKWISSN-KVYGERVVAFAAVEGIFFSGSFAAIFWIKK 179
Query: 237 RGLMPGLTFSNELISRDEDL 256
RGLMPGLTFSNELISRDE L
Sbjct: 180 RGLMPGLTFSNELISRDEGL 199
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +DL W+KLT+DEKYFI H+LAFFA+SDGIVNENL ERF +VQ +EARCFYGF
Sbjct: 37 EEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTY++D E+
Sbjct: 97 QIAMENIHSEMYSLLIDTYVRDNIEK 122
>sp|Q9DHU2|RIR2_YLDV Ribonucleoside-diphosphate reductase small chain OS=Yaba-like
disease virus GN=20L PE=3 SV=1
Length = 325
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 117/204 (57%), Gaps = 34/204 (16%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------------ 133
N EP+L+ ++V+FPI Y+DIWKMYKKA ASFWT EEVDLSK
Sbjct: 2 NTSCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKN 61
Query: 134 --------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKI 179
+ N + E + S +R Y F+I + Y + I
Sbjct: 62 FIKHILAFFAASDGIVNENLAERFYSEVQISEARC-FYGFQIAMENIHSEMYSLLIDTYI 120
Query: 180 TGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K IE M CVK+KA+WA +WI + ++GER++AFA+VEGIFFSGSFA+IF
Sbjct: 121 LDSKEKNYLFNAIENMNCVKQKANWAKKWIESKNRTYGERLVAFAAVEGIFFSGSFAAIF 180
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W+KKRGLMPGLTFSNELISRDE L
Sbjct: 181 WIKKRGLMPGLTFSNELISRDEGL 204
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 71/86 (82%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D S W KL+ +EK FI H+LAFFAASDGIVNENL ERF EVQI+EARCFYGF
Sbjct: 41 EEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGF 100
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLLIDTYI D +E+
Sbjct: 101 QIAMENIHSEMYSLLIDTYILDSKEK 126
>sp|P42170|RIR2_CAEEL Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis
elegans GN=rnr-2 PE=3 SV=1
Length = 381
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 121/209 (57%), Gaps = 34/209 (16%)
Query: 81 APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------- 133
+ V E EP+L+D RFVIFP+++ DIW YKKA ASFWT EEVDL K +
Sbjct: 53 SEVNELDADEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMN 112
Query: 134 -------------------VTNFEIRALKTGEEKASHSRNEPYLFRI-------KLAPGG 167
+ N + + E + S +R Y F+I ++
Sbjct: 113 GDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARF-FYGFQIAIENIHSEMYSKL 171
Query: 168 ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I Y + + T ++ +KKKADWALRWI+D+ +SF ER+IAFA+VEGIFFSGS
Sbjct: 172 IETYIRDETERNTLFNAVDEFEFIKKKADWALRWISDKKASFAERLIAFAAVEGIFFSGS 231
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
FASIFWLKKRGLMPGLT SNELISRDE L
Sbjct: 232 FASIFWLKKRGLMPGLTHSNELISRDEGL 260
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 72/86 (83%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D++ W K+ DE+YFIS +LAFFAASDGIVNENL ERF+ EVQ++EAR FYGF
Sbjct: 97 EEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGF 156
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSEMYS LI+TYI+D+ ER
Sbjct: 157 QIAIENIHSEMYSKLIETYIRDETER 182
>sp|P42521|RIR2_DICDI Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium
discoideum GN=rnrB-1 PE=2 SV=2
Length = 338
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 117/201 (58%), Gaps = 36/201 (17%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKA 149
EP+L++N RFV+FPI+Y DIW+MYKKA AS W AEE+DL V ++E +
Sbjct: 12 EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNV-DWEYKLTDNERHFI 70
Query: 150 SH------------SRNEPYLFRIKLA-PGGICRYKVK---------------------K 175
SH + N F ++ P C Y + K
Sbjct: 71 SHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDK 130
Query: 176 GGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLK 235
K IET+PC+KKKA+WALRWI D + SF ER++AFA+VEGIFFSGSF SIFWLK
Sbjct: 131 QTKDKLFNAIETIPCIKKKAEWALRWIND-SDSFAERLVAFAAVEGIFFSGSFCSIFWLK 189
Query: 236 KRGLMPGLTFSNELISRDEDL 256
KRGLM GLTFSNELISRDE L
Sbjct: 190 KRGLMQGLTFSNELISRDEGL 210
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 65/73 (89%)
Query: 261 KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320
KLT +E++FISHVLAFFAASDGIVNENL RF EVQI EARCFYGFQIA+EN+HSE YS
Sbjct: 61 KLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYS 120
Query: 321 LLIDTYIKDQEER 333
LLI+TYIKD++ +
Sbjct: 121 LLIETYIKDKQTK 133
>sp|Q8SRR2|RIR2_ENCCU Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0730 PE=3 SV=1
Length = 325
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 113/204 (55%), Gaps = 38/204 (18%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV-------------- 133
ETE LL RFV+ PI+Y DIWKMYKKAE+SFWT EEV L K +
Sbjct: 6 ETELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFI 65
Query: 134 ------------VTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICR---------YK 172
+ N + + E K +R + + ++A I Y
Sbjct: 66 SYVLAFFAASDGIVNLNLVERFSTEVKVLEAR---FFYGFQMAIENIHSEMYSLLIDTYI 122
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
K I T+P VK+KADWA+RWI D+ S F R++AFA VEGIFFSG+FASIF
Sbjct: 123 RDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSDFATRLVAFACVEGIFFSGAFASIF 182
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
WLKKRGLMPGLTFSNELISRDE L
Sbjct: 183 WLKKRGLMPGLTFSNELISRDEGL 206
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 73/86 (84%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E +S D+D+ W KL E++FIS+VLAFFAASDGIVN NLVERF+ EV++ EAR FYGF
Sbjct: 43 EEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGF 102
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+A+EN+HSEMYSLLIDTYI+D +E+
Sbjct: 103 QMAIENIHSEMYSLLIDTYIRDNDEK 128
>sp|P09938|RIR2_YEAST Ribonucleoside-diphosphate reductase small chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR2 PE=1
SV=2
Length = 399
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 135/244 (55%), Gaps = 50/244 (20%)
Query: 56 LTNNLQQSKLSDSPIKDKSTLK--QVS-APVQENVETEPLLRDNPRRFVIFPIQYQDIWK 112
+ +++ + KLS K+ LK QV ++E + EPLL ++ R V+FPI+Y +IW+
Sbjct: 39 VKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQ 98
Query: 113 MYKKAEASFWTAEEVDLSKVV---------------------------------VTNFEI 139
YK+AEASFWTAEE+DLSK + V NF
Sbjct: 99 AYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFST 158
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIE-------TMPCVK 192
++ E K+ Y F+I + Y + I K E T+P +
Sbjct: 159 E-VQIPEAKSF------YGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG 211
Query: 193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 252
+KA+WALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI R
Sbjct: 212 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 271
Query: 253 DEDL 256
DE L
Sbjct: 272 DEGL 275
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 111 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 170
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEE 332
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 171 FQIMIENIHSETYSLLIDTYIKDPKE 196
>sp|O46310|RIR2_LEIAM Ribonucleoside-diphosphate reductase small subunit OS=Leishmania
amazonensis PE=3 SV=1
Length = 345
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 117/209 (55%), Gaps = 45/209 (21%)
Query: 86 NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------- 131
N E EPL ++NP R+V+FPIQY DIW+ YK+ E+ WT EE+DL
Sbjct: 21 NAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERH 80
Query: 132 --------------VVVTNFEIRAL---KTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R + K E +A Y F++ + Y V
Sbjct: 81 FIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAF------YGFQLMMENIHSETYSVL 134
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
IT + I+T+PC++KKA+W +RWI AS F +R+I FA+VEGIFFSGS
Sbjct: 135 LDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGSSAS-FQQRLIGFAAVEGIFFSGS 193
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F ++FWLKKRGLMPGLTFSNELISRDE L
Sbjct: 194 FCALFWLKKRGLMPGLTFSNELISRDEGL 222
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ W L E++FI HVLAFFA SDGIV ENL +RF +V++ EAR FYGF
Sbjct: 60 EEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
Q+ MEN+HSE YS+L+DTYI D EE+
Sbjct: 120 QLMMENIHSETYSVLLDTYITDSEEK 145
>sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis
thaliana GN=RNR2A PE=1 SV=2
Length = 341
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 114/209 (54%), Gaps = 39/209 (18%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------- 131
++E EPLL +RF +FPI+Y+ IW+MYKKAEASFWTAEEVDLS
Sbjct: 12 MEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDS 71
Query: 132 -----------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK 174
+V+ N R L + + + Y F+I + Y +
Sbjct: 72 EKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAF---YGFQIAMENIHSEMYSLL 128
Query: 175 KGGKITGGK-------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
I K IET+PC+ KKA W L WI SF R++AFA VEGIFFSGS
Sbjct: 129 LETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWI-QSPMSFAVRLVAFACVEGIFFSGS 187
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +IFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 188 FCAIFWLKKRGLMPGLTFSNELISRDEGL 216
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+ W LT EK+FISH+LAFFAASDGIV ENL RF +VQ+ EAR FYGF
Sbjct: 54 EEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGF 113
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSEMYSLL++T+IKD +E+
Sbjct: 114 QIAMENIHSEMYSLLLETFIKDSKEK 139
>sp|O15910|RIR2_TRYBB Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma
brucei brucei GN=RNR2 PE=2 SV=1
Length = 337
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 118/223 (52%), Gaps = 47/223 (21%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK------------------ 131
EPLL +NP R+VIFPI+Y DIW+ YK+AE+S WT EE+DL
Sbjct: 17 EPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKH 76
Query: 132 ----------VVVTNF-----------EIRALKTGEEKASHSRNEPYLFRIKLAPGGICR 170
+V+ N E+R + + +E Y I
Sbjct: 77 VLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLID-------T 129
Query: 171 YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFAS 230
Y V K I T+PC++KKA WA+ WI + +SF R++AFA+VEGIFFSGSF +
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQ-TSFPTRLVAFAAVEGIFFSGSFCA 188
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHV 273
IFWLKKRGLMPGLTFSNELISRDE L EKY ++ +
Sbjct: 189 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKL 231
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D++ W KL E++FI HVLAFFAASDGIV ENL ERF EVQ+ E RCFYGF
Sbjct: 52 EEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGF 111
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YS+LIDTY+ D +E+
Sbjct: 112 QIAMENIHSETYSVLIDTYVVDPDEK 137
>sp|P50650|RIR2_PLAF4 Ribonucleoside-diphosphate reductase small chain OS=Plasmodium
falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1
Length = 349
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 104/207 (50%), Gaps = 47/207 (22%)
Query: 89 TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK----------------- 131
E +L RF ++PI Y D+W YKKAEASFWTAEE+DLS
Sbjct: 30 NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIK 89
Query: 132 -----------VVVTNFE---IRALKTGEEKASHS--------RNEPYLFRIKLAPGGIC 169
+V+ N +R ++ E K +S +E Y I
Sbjct: 90 HVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLID------- 142
Query: 170 RYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFA 229
Y + ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF
Sbjct: 143 NYIKDEKERLNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFC 201
Query: 230 SIFWLKKRGLMPGLTFSNELISRDEDL 256
+IFW KK+ + GLTFSNELISRDE L
Sbjct: 202 AIFWFKKQNKLHGLTFSNELISRDEGL 228
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL +F +EVQITEA+ FY F
Sbjct: 66 EEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSF 125
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 126 QIAVENIHSETYSLLIDNYIKDEKER 151
>sp|P50649|RIR2_PLAFG Ribonucleoside-diphosphate reductase small subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR2 PE=3 SV=1
Length = 322
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 101/204 (49%), Gaps = 47/204 (23%)
Query: 92 LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK-------------------- 131
+L RF ++PI Y D++ YKKAEA FWTAEE+D S
Sbjct: 4 ILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFEKLNENEKHFIKHVL 63
Query: 132 --------VVVTNFEI---RALKTGEEKASHS--------RNEPYLFRIKLAPGGICRYK 172
+V+ N + R ++ E K +S +E Y I Y
Sbjct: 64 AFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLID-------NYI 116
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
+ ++ IE +P VK KA WA +WI D +SF ER++A A VEGI FSGSF +IF
Sbjct: 117 KDEKERLNLFHAIENIPAVKNKALWAAKWIND-TNSFAERIVANACVEGILFSGSFCAIF 175
Query: 233 WLKKRGLMPGLTFSNELISRDEDL 256
W KK+ + GLTFSNELISRDE L
Sbjct: 176 WFKKQNKLHGLTFSNELISRDEGL 199
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 66/86 (76%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL + KL +EK+FI HVLAFFAASDGIV ENL F +EVQITEA+ FY F
Sbjct: 37 EEIDYSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSF 96
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIA+EN+HSE YSLLID YIKD++ER
Sbjct: 97 QIAVENIHSETYSLLIDNYIKDEKER 122
>sp|Q9QTF2|RIR2_RSIV Ribonucleoside-diphosphate reductase small chain OS=Red sea bream
iridovirus GN=RR-2 PE=3 SV=1
Length = 312
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 96/191 (50%), Gaps = 34/191 (17%)
Query: 99 RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV------VTNFEIRALK--------- 143
R+V+ P +W MYKKA ASFWT EEVDLS V +T E R +
Sbjct: 3 RYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMA 61
Query: 144 ---TGEEKASHSRNEP---------YLFRIKLAPGGICRYK------VKKGGKITGGKTI 185
G+ + E Y F++ + Y V K +
Sbjct: 62 DGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAA 121
Query: 186 ETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTF 245
E MPCVK KA WA +W+ R++AFA+VEG+ FSGSFA+IFWLKKR LMPGL F
Sbjct: 122 EDMPCVKAKAQWAAQWLNATHKPIATRLLAFAAVEGVMFSGSFAAIFWLKKRSLMPGLAF 181
Query: 246 SNELISRDEDL 256
SNELISRDE L
Sbjct: 182 SNELISRDEGL 192
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 248 ELISRDEDLSHW-NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEV-QITEARCFY 305
E + D+ HW +KLT E+ F+SH+LAFFA +DGIV +NLV F +E+ I EAR FY
Sbjct: 28 EEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDHIPEARAFY 87
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
GFQ+A+EN+H+EMY+ LI T + + +
Sbjct: 88 GFQVAIENIHAEMYTQLIITLVAKENQ 114
>sp|P49723|RIR4_YEAST Ribonucleoside-diphosphate reductase small chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR4 PE=1
SV=1
Length = 345
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 31/210 (14%)
Query: 75 TLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--- 131
T ++ ++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTAEE++L+K
Sbjct: 10 TFQKERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTE 69
Query: 132 ----------VVVTNFEIRALKTGE-------EKASHSRNEP-----YLFRIKLAPGGIC 169
+ N ++ + E S P Y F+I +
Sbjct: 70 DFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSE 129
Query: 170 RYKV------KKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223
Y + K I K I +P VK KA + RWI+++ S + ER++AFA+ EGIF
Sbjct: 130 VYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIF 189
Query: 224 FSGSFASIFWLKKRGLMPGLTFSNELISRD 253
+G++AS+FWL + +MPGL +N I RD
Sbjct: 190 QAGNYASMFWLTDKKIMPGLAMANRNICRD 219
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + KLT D+K +I ++LA +SD +VN+ L+E F+ ++Q E + FYGF
Sbjct: 60 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 308 QIAMENVHSEMYSLLIDTYIKD 329
QI MEN++SE+YS+++D + KD
Sbjct: 120 QIMMENIYSEVYSMMVDAFFKD 141
>sp|Q7T6Y9|RIR2_MIMIV Ribonucleoside-diphosphate reductase small chain OS=Acanthamoeba
polyphaga mimivirus GN=RNR2 PE=3 SV=2
Length = 417
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 104/204 (50%), Gaps = 42/204 (20%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVT----------NFEI 139
EP+L ++ + PI+YQ +W YK ++WT EEVDL+K V NF +
Sbjct: 99 EPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWNNHLSDDDRNFIM 158
Query: 140 RALK-----TGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGK----------- 183
L G A+ N + +IK A C Y + + G+
Sbjct: 159 HVLAFFAAADGIVNANIKENLIDVVKIKEAE---CAYGFQYAMENAHGEMYSLMLTTFVK 215
Query: 184 ----------TIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFW 233
+I+TMP +KKKADW +WI + ++ +++AF+ VEG+FFSGSFASIFW
Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKSD-KTYAHKLVAFSIVEGVFFSGSFASIFW 274
Query: 234 LKKRGL--MPGLTFSNELISRDED 255
LK R + MPGL SN+ I+RDE+
Sbjct: 275 LKTREMHVMPGLIISNQFIARDEN 298
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 254 EDLSHWNK-LTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAME 312
+D++ WN L+ D++ FI HVLAFFAA+DGIVN N+ E V+I EA C YGFQ AME
Sbjct: 140 KDVNDWNNHLSDDDRNFIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAME 199
Query: 313 NVHSEMYSLLIDTYIKDQEER 333
N H EMYSL++ T++KD R
Sbjct: 200 NAHGEMYSLMLTTFVKDDALR 220
>sp|P26713|RIR2_ASFM2 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-052 PE=3 SV=1
Length = 327
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 103/210 (49%), Gaps = 54/210 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPARNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +I +LK++ +MPGL NE ISRDE +
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDEGM 200
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + +T++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESMTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>sp|P42492|RIR2_ASFB7 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-044 PE=3 SV=1
Length = 334
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 54/208 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 68
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 69 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 125
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ + ++ GER++ FA+VEGI F
Sbjct: 126 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPDRNTLGERLVGFAAVEGILFQN 177
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDE 254
F +I +LK++ +MPGL NE ISRDE
Sbjct: 178 HFVAIQFLKEQNIMPGLVSYNEFISRDE 205
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 32 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 88
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 89 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 129
>sp|P0C8I2|RIR2_ASFWA Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-054 PE=3 SV=1
Length = 327
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 102/208 (49%), Gaps = 54/208 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPTKNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDE 254
F +I +LK++ +MPGL NE ISRDE
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDE 198
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>sp|P0C8I1|RIR2_ASFP4 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-056 PE=3 SV=1
Length = 327
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 101/208 (48%), Gaps = 54/208 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL +N RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKSQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P +KK A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIKKMAQWVRQWMDPTKNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDE 254
F +I +LK++ +MPGL NE ISRDE
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDE 198
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKSQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>sp|P0C8I0|RIR2_ASFK5 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-056
PE=3 SV=1
Length = 327
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 54/210 (25%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVV---------------- 133
E LL ++ +RF IFPIQ+ + W YKK E+ WTA+EVD+ K +
Sbjct: 2 EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQ 61
Query: 134 ----------------VTNFEIRALKTGE----------EKASHSRNEPYLFRIK-LAPG 166
+TNF +R +K E ++ HS E Y ++K L P
Sbjct: 62 ILAFFVVADEIVIENLLTNF-MREIKVKEVLYFYTMQAAQECVHS--EAYSIQVKTLIPD 118
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSG 226
K+ +I G IE P ++K A W +W+ +S GER++ FA+VEGI F
Sbjct: 119 E------KEQQRIFSG--IEKHPIIRKMAQWVQQWMDPVKNSLGERLVGFAAVEGILFQN 170
Query: 227 SFASIFWLKKRGLMPGLTFSNELISRDEDL 256
F +I +LK++ +MPGL NE ISRDE +
Sbjct: 171 HFVAIQFLKEQNIMPGLVSYNEFISRDEGM 200
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 233 WLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERF 292
W KK + LT++ + + +D+ W + + ++ F +LAFF +D IV ENL+ F
Sbjct: 25 WYKK---LESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNF 81
Query: 293 TQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+E+++ E FY Q A E VHSE YS+ + T I D++E+
Sbjct: 82 MREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQ 122
>sp|P0C701|RIR2_EBVG Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr
virus (strain GD1) GN=BaRF1 PE=1 SV=1
Length = 302
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 195 ADWALR----WIADE---ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSN 247
AD AL+ W+ D+ A + E+++ F +EGIFF SF SI L+ RGLMPG+ +N
Sbjct: 122 ADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLAN 181
Query: 248 ELISRDEDL 256
ISRDE L
Sbjct: 182 NYISRDELL 190
>sp|P0CAP6|RIR2_EBVB9 Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr
virus (strain B95-8) GN=BaRF1 PE=1 SV=1
Length = 302
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 195 ADWALR----WIADE---ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSN 247
AD AL+ W+ D+ A + E+++ F +EGIFF SF SI L+ RGLMPG+ +N
Sbjct: 122 ADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLAN 181
Query: 248 ELISRDEDL 256
ISRDE L
Sbjct: 182 NYISRDELL 190
>sp|P0CAP7|RIR2_EBVA8 Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr
virus (strain AG876) GN=BaRF1 PE=3 SV=1
Length = 302
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 195 ADWALR----WIADE---ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSN 247
AD AL+ W+ D+ A + E+++ F +EGIFF SF SI L+ RGLMPG+ +N
Sbjct: 122 ADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLAN 181
Query: 248 ELISRDEDL 256
ISRDE L
Sbjct: 182 NYISRDELL 190
>sp|Q01319|RIR2_BHV1C Ribonucleoside-diphosphate reductase small chain OS=Bovine
herpesvirus 1.1 (strain Cooper) GN=UL40 PE=3 SV=1
Length = 314
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 173 VKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF 232
V + G + G P V++K DW R +A A S E+ + +EGIFFS SFA+I
Sbjct: 123 VARAGYVEGALG---DPAVRRKVDWLERRVA-AAESVAEKYVLMILIEGIFFSSSFAAIA 178
Query: 233 WLKKRGLMPGLTFSNELISRDE 254
+L+ L +N+LISRDE
Sbjct: 179 YLRTHNLFVVTCQTNDLISRDE 200
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNEN---LVERFTQEVQITEARCFYGFQIA 310
+D +L+ E F + AF +A+D +VN N L E FTQ+ + +Y Q +
Sbjct: 46 DDAKDVARLSGAELEFYRFLFAFLSAADDLVNVNLGDLSELFTQK----DILHYYIEQES 101
Query: 311 MENVHSEMYS 320
+E VHS +YS
Sbjct: 102 IEVVHSRVYS 111
>sp|Q66662|RIR2_EHV2 Ribonucleoside-diphosphate reductase small chain OS=Equine
herpesvirus 2 (strain 86/87) GN=60 PE=3 SV=1
Length = 305
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 199 LRWI---ADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
L W+ EA + E+V+ F +EGIFF SF SI L+ RGLM G+ +N+ ISRDE
Sbjct: 133 LHWLHGRVSEAKTRAEKVLVFLLIEGIFFISSFYSIATLRVRGLMNGVCMANDYISRDE 191
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 250 ISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQI 309
IS D++ L + F + +F A ++ +VN N ++ + + +Y Q
Sbjct: 33 ISLTSDVACLQSLNPRDLEFYKFLFSFLAMAEKLVNFN-IQALVADFHSHDLEHYYTEQE 91
Query: 310 AMENVHSEMYSLLIDTYIKD 329
AMEN+H ++Y+ +++ + K+
Sbjct: 92 AMENIHGKVYANILNMFFKN 111
>sp|O36410|RIR2_ALHV1 Ribonucleoside-diphosphate reductase small chain OS=Alcelaphine
herpesvirus 1 (strain C500) GN=60 PE=3 SV=1
Length = 305
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 191 VKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI 250
++KK +W L A + E+V+ F +EG+FF SF I L+ +G+MPG+ +N+ I
Sbjct: 129 LQKKLEW-LESKIKMAKTKAEKVLIFYLIEGVFFISSFYCIGLLRVKGVMPGVCMANDYI 187
Query: 251 SRDEDL 256
SRDE L
Sbjct: 188 SRDELL 193
>sp|Q77MS0|RIR2_GAHVM Ribonucleoside-diphosphate reductase small chain OS=Gallid
herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) GN=MDV053
PE=3 SV=1
Length = 343
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 183 KTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG 242
KT P ++ K DW + + E SS E+ I +EGIFFS SFA+I +L+ L
Sbjct: 158 KTSLNSPAIQSKLDWLNKRVI-ECSSIAEKYILMILIEGIFFSASFAAIAYLRINNLFVV 216
Query: 243 LTFSNELISRDE 254
N LISRDE
Sbjct: 217 TCQINNLISRDE 228
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDG 282
F++ I L+ +M T + +IS +DL + LT +E+YF + F +A+D
Sbjct: 45 FYAPECPDIGHLRALSIMNRWTETEFVIS--DDLRDVSMLTEEERYFYRFLFTFLSAADD 102
Query: 283 IVN---ENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLL 322
+VN +NL+ F+Q+ + +Y Q +E VHS YS++
Sbjct: 103 LVNLNIDNLLGLFSQK----DIHHYYFEQECIEAVHSRAYSII 141
>sp|Q4JQV7|RIR2_VZVO Ribonucleoside-diphosphate reductase small chain
OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF18
PE=1 SV=1
Length = 306
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 189 PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 248
P +++K W + D S E+ I +EGIFF SFA+I +L+ GL N+
Sbjct: 129 PSIQQKVQWLEEKVRDNPS-VAEKYILMILIEGIFFVSSFAAIAYLRNNGLFVVTCQFND 187
Query: 249 LISRDE 254
LISRDE
Sbjct: 188 LISRDE 193
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 240 MPGLTFSNELISRD----EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQE 295
+ L+ SN + D +D + + LT DE F + F +A+D +VN NL TQ
Sbjct: 21 LRALSISNRWLESDFIIEDDYQYLDCLTEDELIFYRFIFTFLSAADDLVNVNL-GSLTQL 79
Query: 296 VQITEARCFYGFQIAMENVHSEMYS 320
+ +Y Q +E VH+ +YS
Sbjct: 80 FSQKDIHHYYIEQECIEVVHARVYS 104
>sp|P09247|RIR2_VZVD Ribonucleoside-diphosphate reductase small chain
OS=Varicella-zoster virus (strain Dumas) GN=ORF18 PE=3
SV=1
Length = 306
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 189 PCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNE 248
P +++K W + D S E+ I +EGIFF SFA+I +L+ GL N+
Sbjct: 129 PSIQQKVQWLEEKVRDNPS-VAEKYILMILIEGIFFVSSFAAIAYLRNNGLFVVTCQFND 187
Query: 249 LISRDE 254
LISRDE
Sbjct: 188 LISRDE 193
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 240 MPGLTFSNELISRD----EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQE 295
+ L+ SN + D +D + + LT DE F + F +A+D +VN NL TQ
Sbjct: 21 LRALSISNRWLESDFIIEDDYQYLDCLTEDELIFYRFIFTFLSAADDLVNVNL-GSLTQL 79
Query: 296 VQITEARCFYGFQIAMENVHSEMYS 320
+ +Y Q +E VH+ +YS
Sbjct: 80 FSQKDIHHYYIEQECIEVVHARVYS 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,171,833
Number of Sequences: 539616
Number of extensions: 5111019
Number of successful extensions: 12335
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 12130
Number of HSP's gapped (non-prelim): 202
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)