Query psy4797
Match_columns 333
No_of_seqs 226 out of 1423
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 17:52:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1567|consensus 100.0 1.7E-44 3.6E-49 335.1 13.1 173 83-258 18-225 (344)
2 PTZ00211 ribonucleoside-diphos 100.0 3.1E-39 6.6E-44 313.6 14.8 174 82-259 4-212 (330)
3 PLN02492 ribonucleoside-diphos 100.0 1.1E-38 2.4E-43 308.9 12.4 166 90-259 1-201 (324)
4 PRK07209 ribonucleotide-diphos 100.0 1.5E-36 3.3E-41 298.7 12.9 175 84-259 33-253 (369)
5 PRK09101 nrdB ribonucleotide-d 100.0 1.6E-34 3.4E-39 285.1 16.7 173 84-259 10-244 (376)
6 COG0208 NrdF Ribonucleotide re 100.0 4.2E-34 9E-39 278.0 14.4 165 92-259 18-226 (348)
7 PRK09614 nrdF ribonucleotide-d 100.0 2E-33 4.4E-38 271.9 18.8 166 91-259 2-203 (324)
8 PF00268 Ribonuc_red_sm: Ribon 100.0 3.8E-33 8.2E-38 264.8 10.0 163 91-259 2-199 (281)
9 PRK13966 nrdF2 ribonucleotide- 100.0 2.9E-32 6.3E-37 264.2 16.0 155 100-259 14-202 (324)
10 cd01049 RNRR2 Ribonucleotide R 100.0 4.9E-32 1.1E-36 257.2 14.6 157 100-259 1-195 (288)
11 PRK13965 ribonucleotide-diphos 100.0 9.5E-32 2.1E-36 261.7 16.8 155 100-259 25-213 (335)
12 PRK12759 bifunctional gluaredo 100.0 1.8E-32 3.9E-37 273.3 11.9 168 88-259 89-287 (410)
13 PRK13967 nrdF1 ribonucleotide- 100.0 9E-30 1.9E-34 246.6 17.6 171 97-272 9-223 (322)
14 PRK08326 ribonucleotide-diphos 99.9 1.2E-23 2.6E-28 203.1 10.6 153 98-259 21-214 (311)
15 cd07911 RNRR2_Rv0233_like Ribo 99.9 2.3E-22 4.9E-27 191.2 10.9 147 110-259 9-195 (280)
16 KOG1567|consensus 99.8 5.6E-19 1.2E-23 165.1 5.0 93 241-333 53-145 (344)
17 COG0208 NrdF Ribonucleotide re 99.7 9.6E-18 2.1E-22 163.7 8.0 94 239-332 43-136 (348)
18 PRK09101 nrdB ribonucleotide-d 99.7 9.5E-17 2.1E-21 158.8 7.9 94 238-331 42-135 (376)
19 PLN02492 ribonucleoside-diphos 99.7 1.6E-16 3.5E-21 154.2 8.8 92 241-332 29-120 (324)
20 PTZ00211 ribonucleoside-diphos 99.7 2.2E-16 4.7E-21 153.8 8.8 91 242-332 41-131 (330)
21 PRK13966 nrdF2 ribonucleotide- 99.6 3.6E-16 7.8E-21 152.0 8.8 88 242-329 33-120 (324)
22 PRK09614 nrdF ribonucleotide-d 99.6 5E-16 1.1E-20 150.6 8.2 92 240-331 29-120 (324)
23 PRK07209 ribonucleotide-diphos 99.6 5.7E-16 1.2E-20 153.0 8.5 93 240-332 66-161 (369)
24 PRK12759 bifunctional gluaredo 99.6 7.6E-16 1.7E-20 154.0 8.0 93 239-331 114-208 (410)
25 PRK13967 nrdF1 ribonucleotide- 99.6 2.6E-15 5.6E-20 145.8 9.2 89 242-330 31-119 (322)
26 PF00268 Ribonuc_red_sm: Ribon 99.6 2.6E-15 5.5E-20 142.8 8.8 91 242-332 28-118 (281)
27 cd01049 RNRR2 Ribonucleotide R 99.6 7.3E-15 1.6E-19 139.6 8.5 91 240-330 18-108 (288)
28 PRK13965 ribonucleotide-diphos 99.5 5.2E-14 1.1E-18 137.4 8.2 89 242-330 44-132 (335)
29 cd07911 RNRR2_Rv0233_like Ribo 99.5 1.1E-13 2.3E-18 131.8 9.2 91 240-330 16-109 (280)
30 PRK08326 ribonucleotide-diphos 99.3 3.6E-12 7.8E-17 123.4 9.0 88 242-330 36-126 (311)
31 PF11583 AurF: P-aminobenzoate 80.8 9.6 0.00021 36.5 8.8 71 257-327 61-140 (304)
32 PF10307 DUF2410: Hypothetical 51.0 4.2 9E-05 37.3 -0.5 20 25-44 16-35 (197)
33 cd00657 Ferritin_like Ferritin 38.5 1.7E+02 0.0037 22.1 7.3 42 290-331 18-59 (130)
34 PF14946 DUF4501: Domain of un 31.2 31 0.00066 30.9 1.7 31 214-244 89-124 (180)
35 PF15431 TMEM190: Transmembran 25.0 1.7E+02 0.0036 24.7 4.9 45 187-247 52-102 (134)
36 PF03405 FA_desaturase_2: Fatt 22.7 3E+02 0.0065 27.3 7.1 50 277-327 163-212 (330)
37 TIGR02029 AcsF magnesium-proto 21.2 1E+02 0.0023 30.4 3.5 48 208-259 73-123 (337)
38 PLN00179 acyl- [acyl-carrier p 20.7 2.5E+02 0.0053 28.5 6.1 52 275-327 218-269 (390)
39 PRK13654 magnesium-protoporphy 20.5 90 0.002 31.1 2.9 50 204-257 79-130 (355)
No 1
>KOG1567|consensus
Probab=100.00 E-value=1.7e-44 Score=335.06 Aligned_cols=173 Identities=62% Similarity=0.983 Sum_probs=159.4
Q ss_pred cccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHh-----------
Q psy4797 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASH----------- 151 (333)
Q Consensus 83 ~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~----------- 151 (333)
.++..++||||.++++|++++||+|+.+|++|||++++||++||||+++|. .||. +|+++||....
T Consensus 18 ~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~-~dw~--~L~~~er~fIs~vlaffaasdG 94 (344)
T KOG1567|consen 18 MKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDL-DDWE--KLNDDERHFISHVLAFFAASDG 94 (344)
T ss_pred ccccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccch-hhHH--HcChhhhhhHHHHHHHHhcccc
Confidence 678889999999999999999999999999999999999999999999999 9999 99999998632
Q ss_pred hcChHHHHHh---hhccchhhcccccc---------------------CChhhhhhhhhhcHHHHHHHHHHHHHhhhccc
Q psy4797 152 SRNEPYLFRI---KLAPGGICRYKVKK---------------------GGKITGGKTIETMPCVKKKADWALRWIADEAS 207 (333)
Q Consensus 152 ~v~~~~~~~~---~~~~e~~~~Ys~~~---------------------~~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~ 207 (333)
.|+++++..+ .+.+|+++|||||+ .+++-+|+++++.|+|++||+|+.+|+.+.++
T Consensus 95 ivnenl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~s 174 (344)
T KOG1567|consen 95 IVNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISDKDS 174 (344)
T ss_pred chhHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCCc
Confidence 2567777644 46899999999982 13567899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhh
Q psy4797 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSH 258 (333)
Q Consensus 208 ~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~ 258 (333)
+|++|+|||+|+|||||+||||++|||++||+|||++..++.|+||+++|+
T Consensus 175 ~faeRlvAFAavEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~ 225 (344)
T KOG1567|consen 175 LFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHC 225 (344)
T ss_pred cHHHHHHHHHHHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcc
Confidence 999999999999999999999999999999999999999999999999995
No 2
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=313.58 Aligned_cols=174 Identities=56% Similarity=0.937 Sum_probs=150.1
Q ss_pred ccccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh---------
Q psy4797 82 PVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS--------- 152 (333)
Q Consensus 82 ~~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~--------- 152 (333)
.+++.|++||||.||++|++++|++|||+|++|++++++||+|+|||+++|+ .||+ +||+.||+++..
T Consensus 4 ~~~~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D 80 (330)
T PTZ00211 4 AMKENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDL-KDWE--KLNDGERHFIKHVLAFFAASD 80 (330)
T ss_pred hhhcccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999 9998 899999998652
Q ss_pred --cCh---------------HHHHHhhhccc--hhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhcc
Q psy4797 153 --RNE---------------PYLFRIKLAPG--GICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEA 206 (333)
Q Consensus 153 --v~~---------------~~~~~~~~~~e--~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~ 206 (333)
|+. +.+.+.|...| |..+|+++++ ++.++|++++++|+|++|++|+.+|+++.
T Consensus 81 ~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~- 159 (330)
T PTZ00211 81 GIVLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSS- 159 (330)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcc-
Confidence 111 11123333334 4447886532 33578999999999999999999999854
Q ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 207 SSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 207 ~~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++++++|+++++|||+|||||+++++|++||+|||+++++++|.|||.+|+.
T Consensus 160 ~~~~~~lv~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 212 (330)
T PTZ00211 160 NSFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTD 212 (330)
T ss_pred hHHHHHHHHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHH
Confidence 56999999999999999999999999999999999999999999999999974
No 3
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=1.1e-38 Score=308.93 Aligned_cols=166 Identities=58% Similarity=0.935 Sum_probs=143.2
Q ss_pred CCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh---
Q psy4797 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE--- 155 (333)
Q Consensus 90 e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~--- 155 (333)
||||++|++|++++|++|||+|++|++++++||+||||||++|+ .||+ +||++||+++.. |+.
T Consensus 1 e~~l~en~~r~~~~p~~Y~~~~~ly~~~~~~fW~peEi~ls~D~-~dw~--~Lt~~Er~~~~~il~~~~~~D~~v~~~~~ 77 (324)
T PLN02492 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADL-KDWE--KLTDDERHFISHVLAFFAASDGIVLENLA 77 (324)
T ss_pred CcccccCCCCceecCCCcHHHHHHHHHHHHcCCChhhcChhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999 9998 899999997652 211
Q ss_pred ------------HHHHHhh--hccchhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHH
Q psy4797 156 ------------PYLFRIK--LAPGGICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVI 214 (333)
Q Consensus 156 ------------~~~~~~~--~~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lV 214 (333)
+.+.+.| +|..|..+||++.+ ++.++|++++++|+|++|++|+.+|+++ .+++++++|
T Consensus 78 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~-~~~~~~~lv 156 (324)
T PLN02492 78 ARFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWALRWIDS-SASFAERLV 156 (324)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 1122223 33344457876532 2367899999999999999999999964 567999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 215 a~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++++|||+|||||+++++|+++|+|||+++++++|.|||.+|+.
T Consensus 157 a~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 201 (324)
T PLN02492 157 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCD 201 (324)
T ss_pred HHHhhhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999974
No 4
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=1.5e-36 Score=298.72 Aligned_cols=175 Identities=19% Similarity=0.314 Sum_probs=146.4
Q ss_pred ccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccc-cCCChhHHHHHhh----------
Q psy4797 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEI-RALKTGEEKASHS---------- 152 (333)
Q Consensus 84 ~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~-~~Lt~~Er~~~~~---------- 152 (333)
+....++.|+.|++++++++||+|||+|++|+++++|||+||||||++|+ .||+. .+||+.||+++..
T Consensus 33 ~~~~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di-~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds 111 (369)
T PRK07209 33 RVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDI-ALWKSPNGLTEDERRIVKRNLGFFSTADS 111 (369)
T ss_pred cccccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccH-HHHccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 44556788999988889999999999999999999999999999999999 99971 1499999998652
Q ss_pred -cCh---------------HHHHHhhh--ccchhhccccccC----ChhhhhhhhhhcHHHHHHHHHHHHHhhh------
Q psy4797 153 -RNE---------------PYLFRIKL--APGGICRYKVKKG----GKITGGKTIETMPCVKKKADWALRWIAD------ 204 (333)
Q Consensus 153 -v~~---------------~~~~~~~~--~~e~~~~Ys~~~~----~~~~~f~~~~~~p~i~~Ka~~i~~~~~~------ 204 (333)
|+. +.+++.|. |..|..+|+++++ +++++|++++++|+|++|++|+.+||+.
T Consensus 112 ~v~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~ 191 (369)
T PRK07209 112 LVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNF 191 (369)
T ss_pred HHHHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Confidence 211 22223333 3444458887643 5578999999999999999999999974
Q ss_pred ------ccchHHHHHHHHH-HHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 205 ------EASSFGERVIAFA-SVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 205 ------~~~~~~~~lVa~~-~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++.+++++|+|+ ++|||+|||||+++++|+++|+|||+++++++|.|||.+|+.
T Consensus 192 ~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~ 253 (369)
T PRK07209 192 KTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLN 253 (369)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHH
Confidence 2456999999987 589999999999999999999999999999999999999974
No 5
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.6e-34 Score=285.12 Aligned_cols=173 Identities=23% Similarity=0.184 Sum_probs=144.8
Q ss_pred ccCccCCCCccCCCC-cccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh----------
Q psy4797 84 QENVETEPLLRDNPR-RFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS---------- 152 (333)
Q Consensus 84 ~~~~~~e~ll~~n~~-r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~---------- 152 (333)
+-+.+++||+.|++. ...+.|++|||+|++||++.++||+||||||++|+ .||+ +||+.||+++..
T Consensus 10 ~~~~~~~~~~~g~~~~~~~~~~~~y~~~~~lyk~~~~~fW~peEv~ls~D~-~dw~--~Lt~~Er~~~~~~L~~lt~lDs 86 (376)
T PRK09101 10 KNDQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDR-IDYQ--ALPEHEKHIFISNLKYQTLLDS 86 (376)
T ss_pred CCccccCCccCCCCccccccCchhhHHHHHHHHHHHhCCCCcccccccccH-HHHH--hCCHHHHHHHHHHHHHHHHHHH
Confidence 445678999999964 45688999999999999999999999999999999 9998 899999997642
Q ss_pred -cCh---------------HHHHHhh--hccchhhcccccc----CChhhhhhhhhhcHHHHHHHHHHHHHhhhc-----
Q psy4797 153 -RNE---------------PYLFRIK--LAPGGICRYKVKK----GGKITGGKTIETMPCVKKKADWALRWIADE----- 205 (333)
Q Consensus 153 -v~~---------------~~~~~~~--~~~e~~~~Ys~~~----~~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~----- 205 (333)
++. +.+++.+ +|..|..+||+++ .++.++|++++++|+|++|++|+.+||++.
T Consensus 87 ~q~~~~~~~~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~~~~e~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~ 166 (376)
T PRK09101 87 IQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISSYYDDLIEMTS 166 (376)
T ss_pred HHHHhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhhh
Confidence 111 1222223 3444555888763 356789999999999999999999999753
Q ss_pred ------------------------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 206 ------------------------ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 206 ------------------------~~~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
.+.+++++||++++|||+|||||+++++|+++|+|+|+++++++|.|||.+|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~ 244 (376)
T PRK09101 167 YYHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244 (376)
T ss_pred hhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHH
Confidence 234677889999999999999999999999999999999999999999999974
No 6
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.2e-34 Score=278.02 Aligned_cols=165 Identities=28% Similarity=0.392 Sum_probs=135.7
Q ss_pred CccCCC-CcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhhc-----------C-----
Q psy4797 92 LLRDNP-RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSR-----------N----- 154 (333)
Q Consensus 92 ll~~n~-~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~v-----------~----- 154 (333)
++.+++ ++.+++||+|||+|++|+++++|||+||||||++|+ .||+ +||+.||+++..+ +
T Consensus 18 ~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~-~dw~--~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~ 94 (348)
T COG0208 18 IFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDI-KDWK--KLSDDEKDLIIRVLAFLTLLDSIQANNGVP 94 (348)
T ss_pred cccCCccccccCCccccHHHHHHHHHHHhcCCCchhcCccccH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 566655 679999999999999999999999999999999999 9999 9999999986521 1
Q ss_pred ----------hHHHHHhh--hccchhhcccccc------CChhhhh-hhhhhcHHHHHHHHHHHHHhhh------c--cc
Q psy4797 155 ----------EPYLFRIK--LAPGGICRYKVKK------GGKITGG-KTIETMPCVKKKADWALRWIAD------E--AS 207 (333)
Q Consensus 155 ----------~~~~~~~~--~~~e~~~~Ys~~~------~~~~~~f-~~~~~~p~i~~Ka~~i~~~~~~------~--~~ 207 (333)
...+++.+ +|..|.++|+++. .+.+++| +|+.++|.+++|+++|...|++ + ..
T Consensus 95 ~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k~~~i~~~y~~~~~~~~~~~~~ 174 (348)
T COG0208 95 ALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEKAEIILRYYDDLGDDPDDPLEE 174 (348)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCcccchHH
Confidence 12222332 4556667888763 3557766 7888999999999999999983 1 22
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 208 ~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
.+.+++|+.+++||++|||||+++++|.+||||||+++++++|.|||.+|++
T Consensus 175 ~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~ 226 (348)
T COG0208 175 FLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLY 226 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 3455555557999999999999999999999999999999999999999986
No 7
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=2e-33 Score=271.90 Aligned_cols=166 Identities=22% Similarity=0.246 Sum_probs=139.9
Q ss_pred CCccCC-CCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh---
Q psy4797 91 PLLRDN-PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE--- 155 (333)
Q Consensus 91 ~ll~~n-~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~--- 155 (333)
+++.++ .++.+++|++|||+|++|+++++|||+|+|||+++|+ .||+ +||+.||+++.. |+.
T Consensus 2 ~~~~g~~~~~~~~~~~~y~~~~~~y~~~~~~fW~peEi~~s~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~ 78 (324)
T PRK09614 2 KIIGGNTYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDL-KDWK--KLSDEEKNLYTRVFGGLTLLDTLQNNNGM 78 (324)
T ss_pred CCcCCCCcccccCCCcccHHHHHHHHHHHhCCCCCccccccchH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 456665 4689999999999999999999999999999999999 9998 999999998652 111
Q ss_pred ------------HHHHHhhhccc--hhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhcc-chHHHHHH
Q psy4797 156 ------------PYLFRIKLAPG--GICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEA-SSFGERVI 214 (333)
Q Consensus 156 ------------~~~~~~~~~~e--~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~-~~~~~~lV 214 (333)
+.+++.+...| |..+||++++ +..++|++++++|++++|++|+.++|++.. +.+++++|
T Consensus 79 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~ 158 (324)
T PRK09614 79 PNLMPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAV 158 (324)
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22223333334 4447887632 346799999999999999999999998643 36899999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 215 AFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 215 a~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++++|||+|||||+++++|++||+|||+++++++|.|||.+|+.
T Consensus 159 ~~~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 203 (324)
T PRK09614 159 ASVFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGY 203 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999999975
No 8
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=100.00 E-value=3.8e-33 Score=264.78 Aligned_cols=163 Identities=34% Similarity=0.574 Sum_probs=134.1
Q ss_pred CCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh----
Q psy4797 91 PLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE---- 155 (333)
Q Consensus 91 ~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~---- 155 (333)
|||++|+.|| +||+|||+|++|+|++++||+|+|||+++|+ .||+ +||+.||+++.. |+.
T Consensus 2 ~~l~~~~~~~--~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~-~~~~--~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~ 76 (281)
T PF00268_consen 2 PLLKENAINW--NPIKYPWFWDLYKKAESNFWTPEEIDMSKDI-KDWK--KLSEEEREAYKRILAFFAQLDSLVSENLLP 76 (281)
T ss_dssp TTTSCGTTCT--TS-SSHHHHHHHHHHHHT---GGGS-GGGHH-HHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHhC--CCCCCHHHHHHHHHHHhCCCCchhcChhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence 7899999987 8999999999999999999999999999999 9999 899999997652 111
Q ss_pred -----------HHHHHhhh--ccchhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHH
Q psy4797 156 -----------PYLFRIKL--APGGICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIA 215 (333)
Q Consensus 156 -----------~~~~~~~~--~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa 215 (333)
..+++.|. |..|..+|++..+ +..++|+++.++|.+++|++|+.+++++..+ +.+++|+
T Consensus 77 ~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~~~~-~~~~lv~ 155 (281)
T PF00268_consen 77 NIMPEITSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYEDNDS-LAEKLVA 155 (281)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCSSSH-HHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhchhhhh-HHHHHHH
Confidence 22223333 3344458887532 3468899999999999999999999987655 9999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 216 FASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 216 ~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++++|||+|||||+++++|+++|+|||+++++++|.|||.+|+.
T Consensus 156 ~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 199 (281)
T PF00268_consen 156 SVILEGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVE 199 (281)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999975
No 9
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.98 E-value=2.9e-32 Score=264.19 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=133.4
Q ss_pred ccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh-------------
Q psy4797 100 FVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE------------- 155 (333)
Q Consensus 100 ~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~------------- 155 (333)
.+++|++|||++++|+++++|||+||||||++|+ .||+ +||+.||+++.. ++.
T Consensus 14 ~n~n~~~~~~~~~~~~~~~~nfW~peEi~l~~D~-~dw~--~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~~~~p 90 (324)
T PRK13966 14 INWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDI-PSWG--TLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTP 90 (324)
T ss_pred ccCCCcccHHHHHHHHHHHhCCCCccccCccchH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCH
Confidence 6899999999999999999999999999999999 9998 899999997652 111
Q ss_pred --HHHHHhh--hccchhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Q psy4797 156 --PYLFRIK--LAPGGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225 (333)
Q Consensus 156 --~~~~~~~--~~~e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI~Fy 225 (333)
+.+++.| +|..|..+|+++++ ++.++|++++++|.|++|++|+.+||+++. .++++||++++||++||
T Consensus 91 e~~~~~~~q~~~E~IHsesYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~--~~~~~va~~~lEgi~Fy 168 (324)
T PRK13966 91 HEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQYYRGDE--PLKRKVASTLLESFLFY 168 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhHHHHH
Confidence 2223333 34444557887632 346889999999999999999999998754 58999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 226 sgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
|||+++++|+++|+|+|+++++++|.|||.+|+.
T Consensus 169 sgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~ 202 (324)
T PRK13966 169 SGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGY 202 (324)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999975
No 10
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=99.98 E-value=4.9e-32 Score=257.16 Aligned_cols=157 Identities=45% Similarity=0.721 Sum_probs=134.9
Q ss_pred ccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh-------------
Q psy4797 100 FVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE------------- 155 (333)
Q Consensus 100 ~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~------------- 155 (333)
++++|++|||+|++|++++++||+|+|||+++|+ .||+ +||+.||+++.. |+.
T Consensus 1 ~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~-~~~~--~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~ 77 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDL-KDWE--KLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIP 77 (288)
T ss_pred CCCCccccHHHHHHHHHHHHcCCChhhcchhhhH-HHHh--HCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChH
Confidence 4789999999999999999999999999999999 9999 899999997652 111
Q ss_pred --HHHHHhhhccchhh--ccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhcc----chHHHHHHHHHHHHH
Q psy4797 156 --PYLFRIKLAPGGIC--RYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEA----SSFGERVIAFASVEG 221 (333)
Q Consensus 156 --~~~~~~~~~~e~~~--~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~----~~~~~~lVa~~~lEG 221 (333)
+.+.+.|...|++| +|++.++ +++++|+++.++|.+++|++|+.+++++.. +++++++|+++++||
T Consensus 78 e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~~~lEg 157 (288)
T cd01049 78 EARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFAERLVAFAILEG 157 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 22223343444444 7876522 368899999999999999999999998754 689999999999999
Q ss_pred HHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 222 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 222 I~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++|||||+++++|+++|+|||++++++.|.|||.+|..
T Consensus 158 i~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 195 (288)
T cd01049 158 IFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGD 195 (288)
T ss_pred HHHHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHH
Confidence 99999999999999999999999999999999999965
No 11
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.98 E-value=9.5e-32 Score=261.68 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=132.8
Q ss_pred ccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhhc-----------C--------------
Q psy4797 100 FVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSR-----------N-------------- 154 (333)
Q Consensus 100 ~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~v-----------~-------------- 154 (333)
.+++|++|||+|++|+++++|||+||||||++|+ +||+ +||++||+++..+ +
T Consensus 25 ~n~~~~~~~~~~~~~~~~~~nfW~peEI~ls~D~-~dw~--~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~~ 101 (335)
T PRK13965 25 INWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDL-NSWR--SLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTD 101 (335)
T ss_pred ccccCcccHHHHHHHHHHHHcCCCccccCchhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccch
Confidence 6789999999999999999999999999999999 9998 8999999976521 0
Q ss_pred -hHHHHHhhh--ccchhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Q psy4797 155 -EPYLFRIKL--APGGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFS 225 (333)
Q Consensus 155 -~~~~~~~~~--~~e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI~Fy 225 (333)
.+.+++.+. |..|..+|+++.+ +..++|++++++|+|++|++|+.++|++. ..++++||++++||++||
T Consensus 102 ~e~~~l~~q~~~E~IHs~sYs~il~tl~~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~--~~~~~~va~~~lEGi~Fy 179 (335)
T PRK13965 102 HEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVVSTESLQRRARVLIPYYTGD--DPLKSKVAAAMMPGFLLY 179 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHH
Confidence 012334443 4444558887632 34579999999999999999999999764 469999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 226 GSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 226 sgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
|||+++++|++||+|||+++++++|.|||.+|+.
T Consensus 180 sgFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~ 213 (335)
T PRK13965 180 GGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNY 213 (335)
T ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999975
No 12
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.98 E-value=1.8e-32 Score=273.29 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=138.4
Q ss_pred cCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh-
Q psy4797 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE- 155 (333)
Q Consensus 88 ~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~- 155 (333)
.+-+|+.+ |.+++|++|||+|++|+++++|||+||||||++|+ .||+..+||++||+++.. |+.
T Consensus 89 ~~~~~~~~---~~~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~-~dw~~~~Lt~~Er~~~~~il~~~~~lD~~v~~~ 164 (410)
T PRK12759 89 KGSSLTTF---SKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDV-TDWKNGKITKVEKEYITNILRLFTQSDVAVGQN 164 (410)
T ss_pred cCCccccc---ccccCCCccHHHHHHHHHHHHcCCCccccchhhhH-HHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455544 45799999999999999999999999999999999 999611699999998752 111
Q ss_pred --------------HHHHHhhh--ccchhhccccccCC---hhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHHH
Q psy4797 156 --------------PYLFRIKL--APGGICRYKVKKGG---KITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAF 216 (333)
Q Consensus 156 --------------~~~~~~~~--~~e~~~~Ys~~~~~---~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~ 216 (333)
+.+++.|. |..|..+|+++.+. ..+.|+.+.++|++++|++|+.++...+.+.++++++++
T Consensus 165 ~~~~~~~~~~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv~~ 244 (410)
T PRK12759 165 YYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSEYHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLAKT 244 (410)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 22223333 33444478876442 356799999999999999999988776667799999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 217 ~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++|||+|||||++++||+++|+|||+++++++|.|||.+|+.
T Consensus 245 ~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~ 287 (410)
T PRK12759 245 VFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVE 287 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975
No 13
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.97 E-value=9e-30 Score=246.64 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=140.6
Q ss_pred CCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhhc-----------C-----------
Q psy4797 97 PRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSR-----------N----------- 154 (333)
Q Consensus 97 ~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~v-----------~----------- 154 (333)
-...+++.++|+|..++|+++.+|||+||||||++|+ .||+ +||+.||+++..+ +
T Consensus 9 ~~~~nwn~~~~~~~~~~~~~~~~~fW~peEI~ls~D~-~dw~--~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~ 85 (322)
T PRK13967 9 VHAINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDL-ASWQ--TLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDA 85 (322)
T ss_pred cccCCCCCccchhhHHHHHHHHhCCCCccccCchhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 3446788899999999999999999999999999999 9999 8999999976421 1
Q ss_pred ----hHHHHHhhh--ccchhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q psy4797 155 ----EPYLFRIKL--APGGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGI 222 (333)
Q Consensus 155 ----~~~~~~~~~--~~e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI 222 (333)
...+++.+. |..|..+|+++.+ +..++|++++++|.|++|++|+.++|++. .+++++|+++++||+
T Consensus 86 ~~~e~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~--~~~~~~v~~~~lEgi 163 (322)
T PRK13967 86 VTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQIIVDYYRGD--DALKRKASSVMLESF 163 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHH
Confidence 122223333 4445558887632 35789999999999999999999999764 478999999999999
Q ss_pred HhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh----------ccCCHHHHHHHHh
Q psy4797 223 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW----------NKLTRDEKYFISH 272 (333)
Q Consensus 223 ~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~----------~~Ls~~Eq~~~~~ 272 (333)
+|||||+++++|++||+|||+++++++|.|||.+|+. .+|+++|+..+..
T Consensus 164 ~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~ 223 (322)
T PRK13967 164 LFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHRE 223 (322)
T ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 9999999999999999999999999999999999975 2455666555444
No 14
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=99.90 E-value=1.2e-23 Score=203.09 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=118.7
Q ss_pred CcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh-----------
Q psy4797 98 RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE----------- 155 (333)
Q Consensus 98 ~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~----------- 155 (333)
.+|+.+|+ ++|+++++|||+|+|||+++|+ +||+ +||+.||+++.. |+.
T Consensus 21 ~~w~~~~~------~ly~~~~~~fW~peEidls~D~-~dw~--~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~~i~~~~~ 91 (311)
T PRK08326 21 LNWNSFPM------KLFAKGNAKFWNPADIDFSRDA-EDWE--KLSDEERDYATRLCAQFIAGEEAVTLDIQPLISAMAA 91 (311)
T ss_pred cCcchhHH------HHHHHHHHcCCCHHhcCccchH-HHHH--hCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccc
Confidence 46777774 4999999999999999999999 9998 899999997652 111
Q ss_pred ------HHHHHhhhccchhh--ccccccC---ChhhhhhhhhhcHHHHHHHH----HHHHHhhh--ccchHHHHHHHHH-
Q psy4797 156 ------PYLFRIKLAPGGIC--RYKVKKG---GKITGGKTIETMPCVKKKAD----WALRWIAD--EASSFGERVIAFA- 217 (333)
Q Consensus 156 ------~~~~~~~~~~e~~~--~Ys~~~~---~~~~~f~~~~~~p~i~~Ka~----~i~~~~~~--~~~~~~~~lVa~~- 217 (333)
+..++.|...|++| +|++..+ ...+.+++++++|.+++|.. +....+.. +.+.+++++++|.
T Consensus 92 ~~~~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~ 171 (311)
T PRK08326 92 EGRLEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTEDLSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNH 171 (311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 22223444455555 7776532 22356788888999999953 54444432 4567888888766
Q ss_pred HHHHHHhhhHHHHH-HHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 218 SVEGIFFSGSFASI-FWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 218 ~lEGI~FysgFa~~-~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++|||+|||||+++ ++|+++|+|||+++++++|.|||.+|..
T Consensus 172 ~iEGi~f~sgF~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~ 214 (311)
T PRK08326 172 VVEGVLAETGYYAWRKICVTRGILPGLQELVRRIGDDERRHIA 214 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 79999999999997 5999999999999999999999999874
No 15
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=99.87 E-value=2.3e-22 Score=191.20 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=109.6
Q ss_pred HHHHHHHHHhC-CcccccccCccchhccccccCCChhHHHHHhh-----------cCh-----------------HHHHH
Q psy4797 110 IWKMYKKAEAS-FWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE-----------------PYLFR 160 (333)
Q Consensus 110 ~~~lYkk~~an-fW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~-----------------~~~~~ 160 (333)
.+++|+++++| ||+|+|||+++|+ +||+ +||+.||+++.. |+. +.+++
T Consensus 9 ~~~ly~~~~~~~~W~~~eid~s~D~-~~w~--~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~ 85 (280)
T cd07911 9 PMKLFEKGKRKGFWNPADIDFSQDR-EDWE--QLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLT 85 (280)
T ss_pred hHHHHHHHHccCCCCHHHcCccchH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 46799999999 9999999999999 9999 899999997652 111 12334
Q ss_pred hhhccchhh--ccccccCC------hhhhhhhhhhcHHHHHHHHHHHHHhhh-ccchHHHHH-HHHHHHHHHHhhhHHHH
Q psy4797 161 IKLAPGGIC--RYKVKKGG------KITGGKTIETMPCVKKKADWALRWIAD-EASSFGERV-IAFASVEGIFFSGSFAS 230 (333)
Q Consensus 161 ~~~~~e~~~--~Ys~~~~~------~~~~f~~~~~~p~i~~Ka~~i~~~~~~-~~~~~~~~l-Va~~~lEGI~FysgFa~ 230 (333)
.|...|++| +|++..+. .+...++....+..+++..+....+++ ++.+++++. +.+.++|||+|||||++
T Consensus 86 ~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~~ 165 (280)
T cd07911 86 QFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYYA 165 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555 77765321 123344555555566676776666654 334567744 45568999999999999
Q ss_pred HH-HHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 231 IF-WLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 231 ~~-~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++ +|+++|+|||+++++++|.|||.+|+.
T Consensus 166 ~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 195 (280)
T cd07911 166 WRTICEKRGILPGMQEGIRRLGDDESRHIA 195 (280)
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHHHHHH
Confidence 87 899999999999999999999999974
No 16
>KOG1567|consensus
Probab=99.75 E-value=5.6e-19 Score=165.07 Aligned_cols=93 Identities=70% Similarity=1.115 Sum_probs=89.1
Q ss_pred CCcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 241 PGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320 (333)
Q Consensus 241 ~g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs 320 (333)
...-+..++|+++.|+++|.+|+++||.++.++|+|++.+|+||++|+.+.|+.+++.||+|+|||+|+++||||+++||
T Consensus 53 easfwtaeevdl~kd~~dw~~L~~~er~fIs~vlaffaasdGivnenl~Erfs~evqv~ear~fygfqIaiENIHSEmYS 132 (344)
T KOG1567|consen 53 EASFWTAEEVDLSKDLDDWEKLNDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYS 132 (344)
T ss_pred hcccCcHHHhccccchhhHHHcChhhhhhHHHHHHHHhccccchhHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccC
Q psy4797 321 LLIDTYIKDQEER 333 (333)
Q Consensus 321 ~il~tl~~d~~e~ 333 (333)
.++++|++||+||
T Consensus 133 lLidtyIrD~ker 145 (344)
T KOG1567|consen 133 LLIDTYIRDPKER 145 (344)
T ss_pred HHHHHHhcChhhh
Confidence 9999999999986
No 17
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=99.72 E-value=9.6e-18 Score=163.71 Aligned_cols=94 Identities=31% Similarity=0.413 Sum_probs=89.0
Q ss_pred CCCCcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHH
Q psy4797 239 LMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEM 318 (333)
Q Consensus 239 ~M~g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~s 318 (333)
++.+.-+.|++|+...|+.+|.+||++||+.+.++++||+++|++|++++...+.+++++||+++++++|++||+||++|
T Consensus 43 ~~~~nFW~PeeI~ls~D~~dw~~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~~~~~~v~~pe~~~~l~~~af~E~iHs~S 122 (348)
T COG0208 43 KLTANFWLPEEIDLSNDIKDWKKLSDDEKDLIIRVLAFLTLLDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEAIHARS 122 (348)
T ss_pred HHHhcCCCchhcCccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccc
Q psy4797 319 YSLLIDTYIKDQEE 332 (333)
Q Consensus 319 Ys~il~tl~~d~~e 332 (333)
|++|++|++.++++
T Consensus 123 Ys~i~~tl~~~e~~ 136 (348)
T COG0208 123 YSYIFDTLGPTEDE 136 (348)
T ss_pred HHHHHHHhCCChhh
Confidence 99999999987754
No 18
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=99.67 E-value=9.5e-17 Score=158.85 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=88.6
Q ss_pred CCCCCcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHH
Q psy4797 238 GLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSE 317 (333)
Q Consensus 238 g~M~g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~ 317 (333)
.++...-+.+++|+..+|+.+|.+||++||++++++|+|++++|++|++++...+++.+++||++++|++|+++|+||++
T Consensus 42 k~~~~~fW~peEv~ls~D~~dw~~Lt~~Er~~~~~~L~~lt~lDs~q~~~~~~~~~~~i~~pE~~~~~~~q~~~E~IHs~ 121 (376)
T PRK09101 42 EKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSR 121 (376)
T ss_pred HHHHhCCCCcccccccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 33556789999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcc
Q psy4797 318 MYSLLIDTYIKDQE 331 (333)
Q Consensus 318 sYs~il~tl~~d~~ 331 (333)
|||+|+++++.|++
T Consensus 122 sYs~il~tl~~~~~ 135 (376)
T PRK09101 122 SYTHIIRNIVNDPS 135 (376)
T ss_pred HHHHHHHHhCCCHH
Confidence 99999999988775
No 19
>PLN02492 ribonucleoside-diphosphate reductase
Probab=99.66 E-value=1.6e-16 Score=154.25 Aligned_cols=92 Identities=65% Similarity=1.008 Sum_probs=87.3
Q ss_pred CCcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 241 PGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320 (333)
Q Consensus 241 ~g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs 320 (333)
...-+.+++|+..+|+.+|.+||++||+.++++++|++++|++|++++...+.+.+++||++++|++|+++|+||+++||
T Consensus 29 ~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs 108 (324)
T PLN02492 29 EASFWTAEEVDLSADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIENIHSEMYS 108 (324)
T ss_pred HHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHhcCCccc
Q psy4797 321 LLIDTYIKDQEE 332 (333)
Q Consensus 321 ~il~tl~~d~~e 332 (333)
+|+++++.|+.+
T Consensus 109 ~i~~tl~~d~~~ 120 (324)
T PLN02492 109 LLLDTYIKDPKE 120 (324)
T ss_pred HHHHHhCCCHHH
Confidence 999999988754
No 20
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=99.66 E-value=2.2e-16 Score=153.77 Aligned_cols=91 Identities=66% Similarity=1.038 Sum_probs=87.0
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+..+|+.+|.+||++||+.++++++|++++|++|++++...+.+.+++||++++|++|+++|+||+++||+
T Consensus 41 ~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~ 120 (330)
T PTZ00211 41 ASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGIVLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSL 120 (330)
T ss_pred HcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHhcCCccc
Q psy4797 322 LIDTYIKDQEE 332 (333)
Q Consensus 322 il~tl~~d~~e 332 (333)
|+++++.|+.+
T Consensus 121 il~tl~~~~~~ 131 (330)
T PTZ00211 121 LIDTYITDEEE 131 (330)
T ss_pred HHHHcCCCHHH
Confidence 99999998765
No 21
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.64 E-value=3.6e-16 Score=151.96 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=84.4
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
+.-+.+++|+..+|+.+|.+||++||++++++|+|++++|++|++|+...+++.+++||++++|++|++||+||+++|++
T Consensus 33 ~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~~~~pe~~~~~~~q~~~E~IHsesYs~ 112 (324)
T PRK13966 33 GNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQ 112 (324)
T ss_pred hCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHhcCC
Q psy4797 322 LIDTYIKD 329 (333)
Q Consensus 322 il~tl~~d 329 (333)
|+++++.+
T Consensus 113 il~tl~~~ 120 (324)
T PRK13966 113 IFSTLCST 120 (324)
T ss_pred HHHHhCCc
Confidence 99999864
No 22
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=99.63 E-value=5e-16 Score=150.63 Aligned_cols=92 Identities=23% Similarity=0.359 Sum_probs=86.7
Q ss_pred CCCcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHH
Q psy4797 240 MPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMY 319 (333)
Q Consensus 240 M~g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sY 319 (333)
+...-+.+++|+..+|+.+|.+||++||+.++++++|++.+|++|++++...+.+.+++||++++|++|+++|+||+++|
T Consensus 29 ~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sY 108 (324)
T PRK09614 29 LTANFWLPEEVPLSNDLKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPDITTPEEEAVLANIAFMEAVHAKSY 108 (324)
T ss_pred HHhCCCCCccccccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34467999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHhcCCcc
Q psy4797 320 SLLIDTYIKDQE 331 (333)
Q Consensus 320 s~il~tl~~d~~ 331 (333)
|+|+++++.+++
T Consensus 109 s~il~tl~~~~~ 120 (324)
T PRK09614 109 SYIFSTLCSPEE 120 (324)
T ss_pred HHHHHHcCCChh
Confidence 999999987653
No 23
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=99.63 E-value=5.7e-16 Score=152.97 Aligned_cols=93 Identities=23% Similarity=0.397 Sum_probs=87.1
Q ss_pred CCCcccchhhhhcchhhhhhc---cCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHH
Q psy4797 240 MPGLTFSNELISRDEDLSHWN---KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHS 316 (333)
Q Consensus 240 M~g~~~~ie~I~rDEdlh~~~---~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~ 316 (333)
+.+.-+.+++|+..+|+++|. +||++||+.++++++||+.+|++|++|+...+++.+++||++++|++|+++|+||+
T Consensus 66 ~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs 145 (369)
T PRK07209 66 GCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHT 145 (369)
T ss_pred HHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999997 49999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccc
Q psy4797 317 EMYSLLIDTYIKDQEE 332 (333)
Q Consensus 317 ~sYs~il~tl~~d~~e 332 (333)
++||+|+++++.|+++
T Consensus 146 ~sYs~ildtl~~~~~e 161 (369)
T PRK07209 146 HAYQYIVESLGLDEGE 161 (369)
T ss_pred HHHHHHHHHhCCCHHH
Confidence 9999999999988753
No 24
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.62 E-value=7.6e-16 Score=154.01 Aligned_cols=93 Identities=29% Similarity=0.433 Sum_probs=87.3
Q ss_pred CCCCcccchhhhhcchhhhhhc--cCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHH
Q psy4797 239 LMPGLTFSNELISRDEDLSHWN--KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHS 316 (333)
Q Consensus 239 ~M~g~~~~ie~I~rDEdlh~~~--~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~ 316 (333)
++...-+.+++|+...|+.+|. +||++||++++++|+||+++|++|++++...+.+.+++||++++|++|+++|+||+
T Consensus 114 ~~~~~fW~peEi~ls~D~~dw~~~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs 193 (410)
T PRK12759 114 KHEKAHWIEDEIDLSEDVTDWKNGKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQ 193 (410)
T ss_pred HHHHcCCCccccchhhhHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999996 79999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcc
Q psy4797 317 EMYSLLIDTYIKDQE 331 (333)
Q Consensus 317 ~sYs~il~tl~~d~~ 331 (333)
++||+|+++++.+++
T Consensus 194 esYs~il~tl~~~~~ 208 (410)
T PRK12759 194 RAYALLNDTLGLPDS 208 (410)
T ss_pred HHHHHHHHHhCCCHH
Confidence 999999999988653
No 25
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.59 E-value=2.6e-15 Score=145.84 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=84.6
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+..+|+.+|.+||++||+.++++++|++++|++|..++...+...++.||++++|++|+++|+||+++|++
T Consensus 31 ~~fW~peEI~ls~D~~dw~~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~~~~e~~~~l~~~~~~E~iHs~sYs~ 110 (322)
T PRK13967 31 GNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSS 110 (322)
T ss_pred hCCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred HHHHhcCCc
Q psy4797 322 LIDTYIKDQ 330 (333)
Q Consensus 322 il~tl~~d~ 330 (333)
|+++++.++
T Consensus 111 il~tl~~~~ 119 (322)
T PRK13967 111 IFSTLCSTK 119 (322)
T ss_pred HHHHhCCCh
Confidence 999998753
No 26
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=99.59 E-value=2.6e-15 Score=142.76 Aligned_cols=91 Identities=35% Similarity=0.596 Sum_probs=81.8
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+..+|+.+|.+||++||+.+++++++|+.+|++|++++...+.+.+++||++++++.|+++|+||+++|++
T Consensus 28 ~~fW~peEi~~~~D~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~ 107 (281)
T PF00268_consen 28 SNFWTPEEIDMSKDIKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIMPEITSPEIRAFLTFQAFMEAIHAESYSY 107 (281)
T ss_dssp HT---GGGS-GGGHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCchhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHhcCCccc
Q psy4797 322 LIDTYIKDQEE 332 (333)
Q Consensus 322 il~tl~~d~~e 332 (333)
|+++++.|+++
T Consensus 108 il~~l~~~~~~ 118 (281)
T PF00268_consen 108 ILDSLGNDPKE 118 (281)
T ss_dssp HHHHHSSSHHH
T ss_pred HHHHhcCChHH
Confidence 99999976654
No 27
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=99.56 E-value=7.3e-15 Score=139.61 Aligned_cols=91 Identities=54% Similarity=0.793 Sum_probs=86.4
Q ss_pred CCCcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHH
Q psy4797 240 MPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMY 319 (333)
Q Consensus 240 M~g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sY 319 (333)
+....+.+++|+..+|+.+|.+||++||+.+++++++++.+|++|++++...+.+.++.||++++++.|+++|+||+++|
T Consensus 18 ~~~~~W~p~ei~~~~D~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~e~~~~~~~q~~~E~iH~e~Y 97 (288)
T cd01049 18 AEANFWTPEEIDLSKDLKDWEKLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIPEARAFYGFQAFMENIHSESY 97 (288)
T ss_pred HHHcCCChhhcchhhhHHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 33467999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHhcCCc
Q psy4797 320 SLLIDTYIKDQ 330 (333)
Q Consensus 320 s~il~tl~~d~ 330 (333)
++++++++.++
T Consensus 98 s~il~~l~~~~ 108 (288)
T cd01049 98 SYILDTLGKDE 108 (288)
T ss_pred HHHHHHhCCCc
Confidence 99999999885
No 28
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.49 E-value=5.2e-14 Score=137.42 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=78.7
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+..+|+.+|.+||++||+.++++|+||+++|++|.+++.....+....++.+++|++|+++|+||+++||+
T Consensus 44 ~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~~~e~~~l~~q~~~E~IHs~sYs~ 123 (335)
T PRK13965 44 QNFWLPEKVPVSNDLNSWRSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDHEQVIYTNFAFMVAIHARSYGT 123 (335)
T ss_pred HcCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999775444455555555599999999999999999999
Q ss_pred HHHHhcCCc
Q psy4797 322 LIDTYIKDQ 330 (333)
Q Consensus 322 il~tl~~d~ 330 (333)
|+++++.++
T Consensus 124 il~tl~~~~ 132 (335)
T PRK13965 124 IFSTLCSSE 132 (335)
T ss_pred HHHHhCCCH
Confidence 999998776
No 29
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=99.48 E-value=1.1e-13 Score=131.84 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=82.2
Q ss_pred CCCc-ccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHh--hhcChHHHHHHHHHHHHHHHHHH
Q psy4797 240 MPGL-TFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFT--QEVQITEARCFYGFQIAMENVHS 316 (333)
Q Consensus 240 M~g~-~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~--~~vt~pE~~~~~a~Q~~~E~IH~ 316 (333)
+... -+.+++|+..+|+.+|.+||++||++++++++||+.+|++|+.++...+. .....||+++|++.|+++|++|+
T Consensus 16 ~~~~~~W~~~eid~s~D~~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~~~EaiH~ 95 (280)
T cd07911 16 GKRKGFWNPADIDFSQDREDWEQLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFLFEEAKHT 95 (280)
T ss_pred HHccCCCCHHHcCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4445 68899999999999999999999999999999999999999999876555 44568999999999999999999
Q ss_pred HHHHHHHHHhcCCc
Q psy4797 317 EMYSLLIDTYIKDQ 330 (333)
Q Consensus 317 ~sYs~il~tl~~d~ 330 (333)
++|++++++++.++
T Consensus 96 esYs~~l~tl~~~~ 109 (280)
T cd07911 96 DFFRRWLDAVGVSD 109 (280)
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999998764
No 30
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=99.33 E-value=3.6e-12 Score=123.37 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=79.0
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcCh---HHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQI---TEARCFYGFQIAMENVHSEM 318 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~---pE~~~~~a~Q~~~E~IH~~s 318 (333)
..-+.+++|+..+|+.+|.+||+.||+.++++++||+.+|++|+.|+. .+.+.... ||+++|++.|+++|++|+++
T Consensus 36 ~~fW~peEidls~D~~dw~~Lt~~Er~~~~~ila~f~~~d~~V~~nl~-~~i~~~~~~~~~e~~~~l~~q~~~EaiH~e~ 114 (311)
T PRK08326 36 AKFWNPADIDFSRDAEDWEKLSDEERDYATRLCAQFIAGEEAVTLDIQ-PLISAMAAEGRLEDEMYLTQFAFEEAKHTEA 114 (311)
T ss_pred HcCCCHHhcCccchHHHHHhCCHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHhhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 355899999999999999999999999999999999999999999974 44455555 99999999999999999999
Q ss_pred HHHHHHHhcCCc
Q psy4797 319 YSLLIDTYIKDQ 330 (333)
Q Consensus 319 Ys~il~tl~~d~ 330 (333)
|+++++++..+.
T Consensus 115 Y~~~le~l~~~~ 126 (311)
T PRK08326 115 FRRWFDAVGVTE 126 (311)
T ss_pred HHHHHHHhCCCH
Confidence 999999987654
No 31
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=80.81 E-value=9.6 Score=36.46 Aligned_cols=71 Identities=20% Similarity=0.171 Sum_probs=52.8
Q ss_pred hhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhH-----hHhhhc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4797 257 SHWNKLTRDEKYFISHVLAFFAASDGIVNENLVE-----RFTQEV----QITEARCFYGFQIAMENVHSEMYSLLIDTYI 327 (333)
Q Consensus 257 h~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~-----~~~~~v----t~pE~~~~~a~Q~~~E~IH~~sYs~il~tl~ 327 (333)
.-|.+||+++|..+...-..-.+...+..|.... .+.... .....+.+...++..|+-|+.+++.+++.+.
T Consensus 61 p~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 61 PLWERLSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999998887777778888776433 333332 2446677777888999999999999999876
No 32
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=51.00 E-value=4.2 Score=37.32 Aligned_cols=20 Identities=40% Similarity=1.185 Sum_probs=15.2
Q ss_pred cceeeeeeeCCceeeecccc
Q psy4797 25 GAVVNTLDFGSGGWWFEPNI 44 (333)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~ 44 (333)
|.+.+--.|.+||||.+|.+
T Consensus 16 g~L~~~~~~~ngGWW~d~~~ 35 (197)
T PF10307_consen 16 GMLMSPDSFSNGGWWHDPRI 35 (197)
T ss_pred HHHhCcccCCCCCCcCCcHH
Confidence 44555567888999999976
No 33
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=38.55 E-value=1.7e+02 Score=22.07 Aligned_cols=42 Identities=5% Similarity=-0.103 Sum_probs=34.5
Q ss_pred HhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy4797 290 ERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQE 331 (333)
Q Consensus 290 ~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~il~tl~~d~~ 331 (333)
..+...+..++++..+..++..|.-|.+....++..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~ 59 (130)
T cd00657 18 GQLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPP 59 (130)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344455668999999999999999999999999998865553
No 34
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=31.20 E-value=31 Score=30.88 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhh-----HHHHHHHHHHcCCCCCcc
Q psy4797 214 IAFASVEGIFFSG-----SFASIFWLKKRGLMPGLT 244 (333)
Q Consensus 214 Va~~~lEGI~Fys-----gFa~~~~L~~~g~M~g~~ 244 (333)
||-..+=|.||-+ +++.+|||++..|+|..-
T Consensus 89 vAASL~LgTffIS~~LilSvA~FFYLKrs~kLP~vf 124 (180)
T PF14946_consen 89 VAASLFLGTFFISLGLILSVASFFYLKRSSKLPHVF 124 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeecccccCCccc
Confidence 4444555666655 668889999999999864
No 35
>PF15431 TMEM190: Transmembrane protein 190
Probab=25.05 E-value=1.7e+02 Score=24.72 Aligned_cols=45 Identities=27% Similarity=0.599 Sum_probs=27.8
Q ss_pred hcHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhHHHHHH-HHHHcCC-----CCCcccch
Q psy4797 187 TMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIF-WLKKRGL-----MPGLTFSN 247 (333)
Q Consensus 187 ~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI~FysgFa~~~-~L~~~g~-----M~g~~~~i 247 (333)
-++.+++|.-|+..|.-. |++|...-.++| |-++|++ |||.-..+
T Consensus 52 pDEnmrrKHmWaL~wtC~----------------gll~Li~~iclFWWAkRrd~~k~lh~P~fL~~~ 102 (134)
T PF15431_consen 52 PDENMRRKHMWALGWTCG----------------GLLLLICSICLFWWAKRRDMCKHLHMPRFLSGF 102 (134)
T ss_pred cchhHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHhchHhhccCchhhccC
Confidence 345789999999888632 334444444445 5566775 67766553
No 36
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=22.73 E-value=3e+02 Score=27.34 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4797 277 FAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYI 327 (333)
Q Consensus 277 l~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~il~tl~ 327 (333)
+..+=.+...|. ..+......|-+...++..+..|+.|...|+.++..++
T Consensus 163 QE~AT~vsh~n~-~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l 212 (330)
T PF03405_consen 163 QERATQVSHRNT-GRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYL 212 (330)
T ss_dssp HHHHHHHHHHHH-HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333333334442 44555568999999999999999999999999999875
No 37
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=21.19 E-value=1e+02 Score=30.41 Aligned_cols=48 Identities=21% Similarity=0.105 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC--cccchhhhhcchhhh-hh
Q psy4797 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPG--LTFSNELISRDEDLS-HW 259 (333)
Q Consensus 208 ~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g--~~~~ie~I~rDEdlh-~~ 259 (333)
.|.+-|+.++..| +|||...=-|.+|.+=++ +++....+.|||..| ++
T Consensus 73 ~FidFLerScTaE----FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGF 123 (337)
T TIGR02029 73 AFIEFLERSCTSE----FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGF 123 (337)
T ss_pred HHHHHHHHHhhhh----hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhh
Confidence 3555555555555 688887778888876666 999999999999999 55
No 38
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=20.69 E-value=2.5e+02 Score=28.55 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4797 275 AFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYI 327 (333)
Q Consensus 275 afl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~il~tl~ 327 (333)
+|+..+=.+--.| ...+.....+|-+....+..+..|+.|...|+.|++.++
T Consensus 218 SFQErAT~VSH~N-TarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~l 269 (390)
T PLN00179 218 SFQERATFISHGN-TARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLF 269 (390)
T ss_pred HHHHHHHHHHhhh-HHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4444444333445 456777778999999999999999999999999999875
No 39
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.50 E-value=90 Score=31.07 Aligned_cols=50 Identities=22% Similarity=0.137 Sum_probs=0.0
Q ss_pred hccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCC--CCCcccchhhhhcchhhh
Q psy4797 204 DEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGL--MPGLTFSNELISRDEDLS 257 (333)
Q Consensus 204 ~~~~~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~--M~g~~~~ie~I~rDEdlh 257 (333)
...+.|.+-|+.++..| +|||..+=-|.+|.+ =|-+++....+.|||..|
T Consensus 79 e~r~~FidFLerSctaE----FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARH 130 (355)
T PRK13654 79 ETRKEFIDFLERSCTAE----FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARH 130 (355)
T ss_pred HHHHHHHHHHHHHhhhh----hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHH
Done!