Query psy4797
Match_columns 333
No_of_seqs 226 out of 1423
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:53:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olj_A Ribonucleoside-diphosph 100.0 2.4E-42 8E-47 328.0 9.2 170 87-259 3-207 (286)
2 1jk0_B RNR Y4, ribonucleoside- 100.0 2.9E-40 9.9E-45 321.1 9.5 173 83-259 18-225 (345)
3 2o1z_A Ribonucleotide reductas 100.0 2.3E-39 8E-44 310.7 8.5 172 84-259 24-230 (311)
4 1h0o_A Ribonucleoside-diphosph 100.0 4.6E-39 1.6E-43 317.0 10.6 172 85-259 66-272 (390)
5 2p1i_A Ribonucleotide reductas 100.0 6.3E-39 2.1E-43 312.2 7.0 169 87-259 28-231 (349)
6 1jk0_A RNR Y2, ribonucleoside- 100.0 3.5E-38 1.2E-42 312.9 8.5 175 83-259 89-298 (419)
7 1syy_A Ribonucleoside-diphosph 100.0 1.1E-37 3.7E-42 303.1 10.9 174 85-259 13-232 (346)
8 1mxr_A Ribonucleotide reductas 100.0 9.9E-37 3.4E-41 299.2 15.2 170 85-259 10-243 (375)
9 2rcc_A Ribonucleoside-diphosph 100.0 2.5E-36 8.5E-41 293.4 14.5 169 88-259 18-225 (346)
10 4a58_A Ribonucleoside-diphosph 100.0 1.6E-37 5.4E-42 299.5 5.3 170 85-259 11-215 (324)
11 3mjo_A Ribonucleotide reductas 100.0 2.9E-35 1E-39 280.5 15.6 180 98-284 16-239 (296)
12 4dr0_A Ribonucleoside-diphosph 100.0 5E-35 1.7E-39 284.7 16.1 184 96-284 25-257 (350)
13 3n37_A Ribonucleoside-diphosph 100.0 1E-34 3.5E-39 279.3 15.6 180 98-284 7-230 (319)
14 3dhz_A Ribonucleotide reductas 100.0 1.7E-34 5.7E-39 279.0 15.4 180 98-284 17-240 (329)
15 3ee4_A Probable ribonucleoside 100.0 7.2E-31 2.5E-35 253.0 6.8 163 88-259 13-216 (323)
16 3olj_A Ribonucleoside-diphosph 99.7 4E-18 1.4E-22 161.5 8.7 91 242-332 35-125 (286)
17 1jk0_B RNR Y4, ribonucleoside- 99.7 2.8E-17 9.7E-22 159.5 7.8 91 243-333 55-145 (345)
18 4a58_A Ribonucleoside-diphosph 99.7 6.7E-17 2.3E-21 155.6 8.9 90 242-332 44-134 (324)
19 3mjo_A Ribonucleotide reductas 99.7 8.3E-17 2.9E-21 153.2 9.2 90 242-331 37-126 (296)
20 2o1z_A Ribonucleotide reductas 99.7 5.1E-17 1.7E-21 155.7 7.2 90 243-332 60-149 (311)
21 1h0o_A Ribonucleoside-diphosph 99.7 1E-16 3.4E-21 157.9 8.7 90 243-332 101-190 (390)
22 1mxr_A Ribonucleotide reductas 99.7 1.2E-16 4E-21 156.7 9.2 89 243-331 46-134 (375)
23 3n37_A Ribonucleoside-diphosph 99.7 1.6E-16 5.6E-21 152.6 9.7 90 242-331 28-117 (319)
24 2p1i_A Ribonucleotide reductas 99.7 4.4E-17 1.5E-21 158.4 5.0 92 241-332 59-150 (349)
25 3dhz_A Ribonucleotide reductas 99.6 2.5E-16 8.4E-21 152.0 9.2 90 242-331 38-127 (329)
26 1syy_A Ribonucleoside-diphosph 99.6 2.6E-16 9E-21 152.6 9.4 90 243-332 49-140 (346)
27 4dr0_A Ribonucleoside-diphosph 99.6 2.6E-16 8.9E-21 153.0 8.7 88 243-330 49-137 (350)
28 1jk0_A RNR Y2, ribonucleoside- 99.6 1.7E-16 5.7E-21 157.5 5.8 92 242-333 125-217 (419)
29 3ee4_A Probable ribonucleoside 99.6 1.1E-15 3.7E-20 147.1 9.7 88 243-331 39-129 (323)
30 2rcc_A Ribonucleoside-diphosph 99.6 6.3E-16 2.2E-20 149.9 7.2 84 243-327 51-134 (346)
31 1zpy_A Hypothetical protein NE 73.3 24 0.00084 27.5 8.9 65 259-326 10-74 (95)
32 3k6c_A Uncharacterized protein 64.9 47 0.0016 25.9 8.9 65 259-326 10-74 (95)
33 1v1c_A Obscurin; muscle, sarco 27.0 22 0.00075 26.3 1.2 22 23-44 27-48 (71)
34 3chh_A P-aminobenzoate N-oxyge 25.5 2.7E+02 0.0093 26.1 8.9 67 258-324 73-148 (336)
No 1
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=100.00 E-value=2.4e-42 Score=328.00 Aligned_cols=170 Identities=65% Similarity=1.031 Sum_probs=148.4
Q ss_pred ccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh
Q psy4797 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE 155 (333)
Q Consensus 87 ~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~ 155 (333)
+++||||.+|++||+++||+|||+|++|+|++++||+|||||+++|+ .||+ +||+.||+++.. |+.
T Consensus 3 ~~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~-~dw~--~L~~~Er~~~~~~l~~~~~~D~iv~~ 79 (286)
T 3olj_A 3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI-QHWE--SLKPEERYFISHVLAFFAASDGIVNE 79 (286)
T ss_dssp STTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSH-HHHH--HSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999 9999 899999997642 221
Q ss_pred ---------------HHHHHhh--hccchhhccccccC----C---hhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHH
Q psy4797 156 ---------------PYLFRIK--LAPGGICRYKVKKG----G---KITGGKTIETMPCVKKKADWALRWIADEASSFGE 211 (333)
Q Consensus 156 ---------------~~~~~~~--~~~e~~~~Ys~~~~----~---~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~ 211 (333)
+.+++.| +|..|..+||++.+ + ++++|++++++|+|++|++|+.+|++++++++++
T Consensus 80 ~l~~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~ 159 (286)
T 3olj_A 80 NLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGE 159 (286)
T ss_dssp HHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCChhHHHH
Confidence 1222333 34455558887632 2 3469999999999999999999999887778999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 212 ~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++|||+++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus 160 ~lva~~~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 207 (286)
T 3olj_A 160 RVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 207 (286)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975
No 2
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=2.9e-40 Score=321.12 Aligned_cols=173 Identities=39% Similarity=0.675 Sum_probs=150.9
Q ss_pred cccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh----------
Q psy4797 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS---------- 152 (333)
Q Consensus 83 ~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~---------- 152 (333)
+++.+++||||.||+.||+++|+||||+|++|+++++|||+||||||++|+ .||+ +||+.||+++..
T Consensus 18 ~~~~~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEI~ls~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D~ 94 (345)
T 1jk0_B 18 MKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDT-EDFQ--KLTDDQKTYIGNLLALSISSDN 94 (345)
T ss_dssp HHHHTTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTS-TTTT--TSCTTHHHHHHHHHHHHC----
T ss_pred hhhhhhcCchhcCCCcccccCCCcchHHHHHHHHHHHcCCChhhcChhhhH-HHHH--HCCHHHHHHHHHHHHHHHHHHH
Confidence 567778999999999999999999999999999999999999999999999 9999 999999998652
Q ss_pred -cCh---------------HHHHHhh--hccchhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccc
Q psy4797 153 -RNE---------------PYLFRIK--LAPGGICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEAS 207 (333)
Q Consensus 153 -v~~---------------~~~~~~~--~~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~ 207 (333)
|+. +.+++.| +|..|..+|+++++ ++ ++|++++++|+|++|++|+.+||+++++
T Consensus 95 iv~~nl~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~e~-~~f~~~~~~p~l~~K~~~i~~~~~~~~~ 173 (345)
T 1jk0_B 95 LVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNI-PLFKEIANLPEVKHKAAFIERWISNDDS 173 (345)
T ss_dssp -----CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTS-CSGGGGCSCHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHhhCHHHHHHHHHHHHHHhCCcH
Confidence 211 2223333 34445558887632 33 6999999999999999999999987677
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 208 ~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++++++||++++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus 174 ~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~ 225 (345)
T 1jk0_B 174 LYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTD 225 (345)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999984
No 3
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=100.00 E-value=2.3e-39 Score=310.74 Aligned_cols=172 Identities=45% Similarity=0.756 Sum_probs=147.6
Q ss_pred ccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------
Q psy4797 84 QENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS----------- 152 (333)
Q Consensus 84 ~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~----------- 152 (333)
+..+++||||.+|+.||+++|+||||+|++|++++++||+|||||+++|+ .||+ +||+.||+++..
T Consensus 24 ~~~~~~e~ll~~n~~r~~~~p~ky~~~~~ly~k~~~~fW~peEIdls~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D~i 100 (311)
T 2o1z_A 24 KSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL-KDFE--KLNDNEKHFIKHVLAFFAASDGI 100 (311)
T ss_dssp HTTGGGCGGGSCCCSCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHH-HHHH--HSCHHHHHHHHHHHHHHHHC---
T ss_pred hhhhhhCchhcCCCcccccCCCCcHHHHHHHHHHHHcCCcHhhcchhccH-HHHH--HCCHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999 9999 899999998652
Q ss_pred cCh---------------HHHHHhhh--ccchhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccch
Q psy4797 153 RNE---------------PYLFRIKL--APGGICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEASS 208 (333)
Q Consensus 153 v~~---------------~~~~~~~~--~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~ 208 (333)
|+. +.+++.|. |..|..+|+++++ +.+++|++++++|+|++|++|+.++|++ +++
T Consensus 101 v~~~l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~-~~~ 179 (311)
T 2o1z_A 101 VLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIND-TNS 179 (311)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTSHHHHHHHHHHHHHSST-TSC
T ss_pred HHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC-ccH
Confidence 221 22233333 3444457887632 2356799999999999999999999974 456
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 209 ~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++++||++++|||+|||||++++||+++|+|||+++++++|.|||.+|+.
T Consensus 180 ~~~~lva~~~lEGi~fysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 230 (311)
T 2o1z_A 180 FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTD 230 (311)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984
No 4
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=100.00 E-value=4.6e-39 Score=317.01 Aligned_cols=172 Identities=64% Similarity=1.026 Sum_probs=149.1
Q ss_pred cCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------c
Q psy4797 85 ENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------R 153 (333)
Q Consensus 85 ~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v 153 (333)
..+.+||||++|+.||+++|+||||+|++|++++++||+||||||++|+ .||+ +|++.||+++.. |
T Consensus 66 ~~~~~e~ll~~n~~r~~l~PikY~~~~~ly~k~~~nfW~peEIdls~D~-~dw~--~Lt~~Er~~~~~vla~fa~~Dsiv 142 (390)
T 1h0o_A 66 PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI-QHWE--ALKPDERHFISHVLAFFAASDGIV 142 (390)
T ss_dssp CSCTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHH-HHHH--HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccCCCcccccCCCCCHHHHHHHHHHHHcCCchhhcchhccH-HHHH--HCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3466799999999999999999999999999999999999999999999 9999 899999997652 1
Q ss_pred Ch---------------HHHHHhh--hccchhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchH
Q psy4797 154 NE---------------PYLFRIK--LAPGGICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEASSF 209 (333)
Q Consensus 154 ~~---------------~~~~~~~--~~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~ 209 (333)
+. +.+++.| +|..|..+|+++++ +++++|++++++|+|++|++|+.+||+++++++
T Consensus 143 ~~nl~~~~~~~v~~pE~~~~~~~Q~~~EaiHsesYS~il~tl~~d~~e~~~if~~~~~~p~l~~Ka~~i~~~~~~~~~~~ 222 (390)
T 1h0o_A 143 NENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222 (390)
T ss_dssp HHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhccchhH
Confidence 11 2223333 33444458887633 235699999999999999999999998766789
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 210 ~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++++||++++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus 223 ~~~lva~~~lEGi~Fys~F~~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~ 272 (390)
T 1h0o_A 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 272 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984
No 5
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii}
Probab=100.00 E-value=6.3e-39 Score=312.17 Aligned_cols=169 Identities=43% Similarity=0.745 Sum_probs=128.9
Q ss_pred ccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cC-
Q psy4797 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RN- 154 (333)
Q Consensus 87 ~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~- 154 (333)
..+||||.+|+.||+++|++|||+|++|+++++|||+||||||++|+ .||+ +||+.||+++.. |+
T Consensus 28 ~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D~iv~~ 104 (349)
T 2p1i_A 28 ESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL-KDFE--KLNVNEKHFIKHVLAFFAASDGIVLE 104 (349)
T ss_dssp -------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCS-HHHH--HSCTTTHHHHHHHHHHHTTC-----C
T ss_pred cccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccH-HHHH--HCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999 9999 899999998752 21
Q ss_pred --------------hHHHHHhhh--ccchhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHH
Q psy4797 155 --------------EPYLFRIKL--APGGICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEASSFGE 211 (333)
Q Consensus 155 --------------~~~~~~~~~--~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~ 211 (333)
.+.+++.|. |..|..+|+++++ +++++|++++++|+|++|++|+.++|+ +.+++++
T Consensus 105 ~l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~-~~~~~~~ 183 (349)
T 2p1i_A 105 NLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWIN-DTNSFAE 183 (349)
T ss_dssp CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSS-CSSCHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHc-CchHHHH
Confidence 122333333 3445558887633 235699999999999999999999997 4457999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 212 ~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++||++++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus 184 ~lva~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 231 (349)
T 2p1i_A 184 RIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTD 231 (349)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984
No 6
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=3.5e-38 Score=312.90 Aligned_cols=175 Identities=49% Similarity=0.825 Sum_probs=152.9
Q ss_pred cccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh----------
Q psy4797 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS---------- 152 (333)
Q Consensus 83 ~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~---------- 152 (333)
+++.+++||||++|+.||+++|++|||+|++|++++++||+||||||++|+ .||+. +|++.||+++..
T Consensus 89 ~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lykk~~anfW~peEIdls~D~-~dw~~-~Lt~~Er~~~~~vLa~fa~~Ds 166 (419)
T 1jk0_A 89 LKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDI-HDWNN-RMNENERFFISRVLAFFAASDG 166 (419)
T ss_dssp HHHHGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHH-HHHHH-TCCHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhhhhCccccCCccccccCCcCcHHHHHHHHHHHHcCCchhhcchhccH-HHHHH-cCCHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999 99974 799999998652
Q ss_pred -cC---------------hHHHHHhh--hccchhhccccccC-------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccc
Q psy4797 153 -RN---------------EPYLFRIK--LAPGGICRYKVKKG-------GKITGGKTIETMPCVKKKADWALRWIADEAS 207 (333)
Q Consensus 153 -v~---------------~~~~~~~~--~~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~ 207 (333)
|+ .+.+++.| +|..|..+|+++++ +++++|++++++|+|++|++|+.+||+++++
T Consensus 167 iv~~nl~~~l~~~v~~pE~~~~~~~Q~~~EaIHsesYS~il~tl~~d~~e~~~iF~~i~~~p~L~~Ka~~i~~~~~~~~~ 246 (419)
T 1jk0_A 167 IVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADA 246 (419)
T ss_dssp HHHHHHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHhccch
Confidence 11 13333444 34445558887643 2346999999999999999999999988777
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 208 ~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++++++||++++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus 247 ~~~~~lva~~~lEGI~fsg~Fa~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~ 298 (419)
T 1jk0_A 247 LFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTD 298 (419)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999984
No 7
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=100.00 E-value=1.1e-37 Score=303.07 Aligned_cols=174 Identities=17% Similarity=0.248 Sum_probs=147.9
Q ss_pred cCccCCCCccC-CCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------
Q psy4797 85 ENVETEPLLRD-NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS----------- 152 (333)
Q Consensus 85 ~~~~~e~ll~~-n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~----------- 152 (333)
....++|||+| +++|++++|+||||+|++|++++++||+||||||++|+ .||+..+||+.||+++..
T Consensus 13 ~~~~~~~i~~~~~~~~~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~-~dw~~~~Lt~~Er~~~~~~l~~~~~~D~i 91 (346)
T 1syy_A 13 VNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDI-ELWKSDRLSEDERRVILLNLGFFSTAESL 91 (346)
T ss_dssp CCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHH-HHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCcCCCCCCcceecCCccHHHHHHHHHHHHcCCcHhhcchhhhH-HHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999 77999999999999999999999999999999999999 999822599999997652
Q ss_pred cCh---------------HHHHHhhhccc--hhhcccccc----CChhhhhhhhhhcHHHHHHHHHHHHHhhhc------
Q psy4797 153 RNE---------------PYLFRIKLAPG--GICRYKVKK----GGKITGGKTIETMPCVKKKADWALRWIADE------ 205 (333)
Q Consensus 153 v~~---------------~~~~~~~~~~e--~~~~Ys~~~----~~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~------ 205 (333)
|+. +.+++.|...| |..+|++++ .++.++|++++++|+|++|++|+.++|++.
T Consensus 92 v~~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~e~f~~~~~~p~l~~k~~~i~~~y~~~~~~~~~ 171 (346)
T 1syy_A 92 VGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFR 171 (346)
T ss_dssp HHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHHTTSGGGSTTCC
T ss_pred HHHhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhccc
Confidence 221 22233333334 445788763 356789999999999999999999999753
Q ss_pred ------cchHHHHHHHH-HHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 206 ------ASSFGERVIAF-ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 206 ------~~~~~~~lVa~-~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++++++++||| +++|||+|||||+++++|+++|+|||+++++++|.|||.+|+.
T Consensus 172 ~~~~~~~~~~~~~lva~~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 232 (346)
T 1syy_A 172 TDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLN 232 (346)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Confidence 46899999999 5999999999999999999999999999999999999999985
No 8
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=100.00 E-value=9.9e-37 Score=299.22 Aligned_cols=170 Identities=24% Similarity=0.242 Sum_probs=144.5
Q ss_pred cCccCCCCccCCC---CcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh---------
Q psy4797 85 ENVETEPLLRDNP---RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS--------- 152 (333)
Q Consensus 85 ~~~~~e~ll~~n~---~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~--------- 152 (333)
.+..+||||.|++ +|+ .|++|||+|++|+++.++||+||||||++|+ .||+ +||+.||+++..
T Consensus 10 ~~~~~~~~~~g~~~n~~r~--~~~~y~~~~~lykk~~~~fW~peEIdls~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D 84 (375)
T 1mxr_A 10 NDQLKEPMFFGQPVNVARY--DQQKYDIFEKLIEKQLSFFWRPEEVDVSRDR-IDYQ--ALPEHEKHIFISNLKYQTLLD 84 (375)
T ss_dssp CCTTSSCSBSSSCCCSCCC--SCCSCHHHHHHHHHHHHTCCCGGGSCCTTHH-HHHH--TSCHHHHHHHHHHHHHHHHHH
T ss_pred CccccCcCcCCCCCChhhc--CCcccHHHHHHHHHHHhcCCCchhcchhhhH-HHHH--HCCHHHHHHHHHHHHHHHHHH
Confidence 3457899999988 454 4999999999999999999999999999999 9999 999999997652
Q ss_pred --cCh---------------HHHHHhh--hccchhhcccccc----CChhhhhhhhhhcHHHHHHHHHHHHHhhhc----
Q psy4797 153 --RNE---------------PYLFRIK--LAPGGICRYKVKK----GGKITGGKTIETMPCVKKKADWALRWIADE---- 205 (333)
Q Consensus 153 --v~~---------------~~~~~~~--~~~e~~~~Ys~~~----~~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~---- 205 (333)
|+. ..++..+ +|..|..+|++++ .++.++|++++++|+|++|++|+.++|++.
T Consensus 85 siv~~~~~~~~~~~v~~pE~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~e~f~~i~~~p~i~~Ka~~i~~~y~~~~~~~ 164 (375)
T 1mxr_A 85 SIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 (375)
T ss_dssp HHHHHHHHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhh
Confidence 111 2222222 3444555888763 356789999999999999999999999752
Q ss_pred -------------------------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 206 -------------------------ASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 206 -------------------------~~~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++++++++||++++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~G~~~~i~lI~RDE~lH~~ 243 (375)
T 1mxr_A 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 243 (375)
T ss_dssp HHHHHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999999999999999985
No 9
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.5e-36 Score=293.43 Aligned_cols=169 Identities=18% Similarity=0.244 Sum_probs=146.2
Q ss_pred cCCCCccCCCCc-ccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh
Q psy4797 88 ETEPLLRDNPRR-FVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE 155 (333)
Q Consensus 88 ~~e~ll~~n~~r-~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~ 155 (333)
.++|||.||+.+ .+++|++|||+|++|++++++||+|||||+++|+ .||+ +||+.||+++.. |+.
T Consensus 18 ~~~~i~~~~~~~~~n~~~~~y~~~~~ly~~~~~~fW~peEIdls~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D~~v~~ 94 (346)
T 2rcc_A 18 ASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDA-KQFP--TLTETEQEAFKKIIGLLAFLDSVQTD 94 (346)
T ss_dssp SCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHH-HHGG--GSCHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred ccCCCcCCCCCcccccCCCCCHHHHHHHHHHHHcCCChhhcchhhhH-HHHH--HCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999976 5699999999999999999999999999999999 9999 899999998652 221
Q ss_pred --------------HHHHHhhh--ccchhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhh-----ccch
Q psy4797 156 --------------PYLFRIKL--APGGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIAD-----EASS 208 (333)
Q Consensus 156 --------------~~~~~~~~--~~e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~-----~~~~ 208 (333)
+.+++.|. |..|..+|+++++ +++++|++++++|+|++|++|+.++|++ ++++
T Consensus 95 ~l~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~ 174 (346)
T 2rcc_A 95 YSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKT 174 (346)
T ss_dssp HHHHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred hHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCCChHH
Confidence 22233333 3344457887632 4678999999999999999999999974 3468
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 209 FGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 209 ~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++++||++++|||+|||||++++||+++|+|||+++++++|.|||.+|+.
T Consensus 175 ~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 225 (346)
T 2rcc_A 175 FLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVY 225 (346)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999985
No 10
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=100.00 E-value=1.6e-37 Score=299.53 Aligned_cols=170 Identities=22% Similarity=0.276 Sum_probs=133.8
Q ss_pred cCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------c
Q psy4797 85 ENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------R 153 (333)
Q Consensus 85 ~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v 153 (333)
+...-+|+|.+|+.|+. +|++||++|++|+|+++|||+||||||++|+ .||+ +||+.||+++.. |
T Consensus 11 ~~~~~~~~~~~~~~r~~-~p~~yp~~~~lykk~~~~fW~peEI~ls~D~-~dw~--~Lt~~Er~~~~~vl~~~~~~D~iv 86 (324)
T 4a58_A 11 ESTSLYKKAGSAMSKLL-YVRDHEGFACLTVETHRNRWFAAHIVLTKDC-GCLK--LLNERDLEFYKFLFTFLAMAEKLV 86 (324)
T ss_dssp --------------CCS-CCCCCHHHHHHHHHHHHHCCCGGGCCCHHHH-HHGG--GSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhccCHHhhc-CCccCHHHHHHHHHHHHcCCChHhcCHhhhH-HHHH--hCCHHHHHHHHHHHHHHHHhHHHH
Confidence 34456899999999985 7999999999999999999999999999999 9999 899999997652 1
Q ss_pred Ch--------------HHHHHhh--hccchhhccccccC--------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchH
Q psy4797 154 NE--------------PYLFRIK--LAPGGICRYKVKKG--------GKITGGKTIETMPCVKKKADWALRWIADEASSF 209 (333)
Q Consensus 154 ~~--------------~~~~~~~--~~~e~~~~Ys~~~~--------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~ 209 (333)
+. +.+++.| +|..|..+||++++ +++++|++++++|+|++|++|+.+||++. +++
T Consensus 87 ~~nl~~l~~~i~~pE~~~~l~~q~~~E~iHs~sYs~il~tl~~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~-~~~ 165 (324)
T 4a58_A 87 NFNIDELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMTDEALQAKISWLRDKVAAA-VTL 165 (324)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTCGGGHHHHHCCCCCHHHC-SSH
T ss_pred HhhHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCc-hhH
Confidence 21 2222333 34445558887632 23469999999999999999999999875 469
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 210 ~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
++++||++++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus 166 ~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~ 215 (324)
T 4a58_A 166 PEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTR 215 (324)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975
No 11
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=100.00 E-value=2.9e-35 Score=280.53 Aligned_cols=180 Identities=14% Similarity=0.174 Sum_probs=147.7
Q ss_pred CcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh-----------
Q psy4797 98 RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE----------- 155 (333)
Q Consensus 98 ~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~----------- 155 (333)
.+.+++||+|||+|++|+|++++||+||||||++|+ .||+ +||+.||+++.. ++.
T Consensus 16 ~~inwn~i~y~~~~~~y~k~~~~fW~peEI~ls~D~-~dw~--~Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~ 92 (296)
T 3mjo_A 16 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDI-QSWN--KMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAE 92 (296)
T ss_dssp CCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGH-HHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCS
T ss_pred ccccCCCCccHHHHHHHHHHHHcCCCHHHcChhccH-HHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 468899999999999999999999999999999999 9999 899999997652 111
Q ss_pred ----HHHHHhh--hccchhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q psy4797 156 ----PYLFRIK--LAPGGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223 (333)
Q Consensus 156 ----~~~~~~~--~~~e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI~ 223 (333)
+.+.+.| +|..|..+|+++++ ++.++|+|++++|+|++|++|+.+||++. .+++++||++++|||+
T Consensus 93 ~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~--~~~~~~va~~~lEGi~ 170 (296)
T 3mjo_A 93 TMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGD--DPLKKKVASTLLESFL 170 (296)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 1222333 33444557887643 23579999999999999999999999874 4789999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh----------ccCCHHHHHHHHhHHHHHHHHHHHH
Q psy4797 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW----------NKLTRDEKYFISHVLAFFAASDGIV 284 (333)
Q Consensus 224 FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~----------~~Ls~~Eq~~~~~iLafl~~lDslv 284 (333)
|||||++++||+++|+|||+++++++|.|||.+|+. .+++++++..++... ..+++..+
T Consensus 171 FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~~~e~~~~v--~~l~~eav 239 (296)
T 3mjo_A 171 FYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYT--FDLMYDLY 239 (296)
T ss_dssp HHHHTHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHH--HHHHHHHH
Confidence 999999999999999999999999999999999984 467777766666555 44445444
No 12
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=100.00 E-value=5e-35 Score=284.73 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=151.1
Q ss_pred CCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh---------
Q psy4797 96 NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE--------- 155 (333)
Q Consensus 96 n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~--------- 155 (333)
.-.+.+++||+|||+|++|+++++|||+||||||++|+ .||+ +||+.||+++.. |+.
T Consensus 25 ~~~~inwn~i~y~~~~~~ykk~~~nfW~peEI~ls~D~-~dw~--~Lt~~Er~~~~~vl~f~~~~Dsiv~~~~~~~~~~~ 101 (350)
T 4dr0_A 25 IYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDL-LTWK--YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEH 101 (350)
T ss_dssp CCCCSCSSSCSSSSHHHHHHHHHHTCCCGGGSCCGGGH-HHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccCCCCcccHHHHHHHHHHHHcCCChhhcChhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 34578899999999999999999999999999999999 9999 999999997652 111
Q ss_pred ------HHHHHhh--hcc-chhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhcc----chHHHHHHHH
Q psy4797 156 ------PYLFRIK--LAP-GGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEA----SSFGERVIAF 216 (333)
Q Consensus 156 ------~~~~~~~--~~~-e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~----~~~~~~lVa~ 216 (333)
+.+++.+ +|. .|..+|+++++ ++.++|++++++|+|++|++|+.+||++.. +.+++++||+
T Consensus 102 v~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~~~~e~~~~f~~~~~~p~l~~Ka~~i~~~y~~~~~~~~~~~~~~lva~ 181 (350)
T 4dr0_A 102 VDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVAS 181 (350)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 2222333 344 55568987643 346899999999999999999999998643 3699999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh----------ccCCHHHHHHHHhHHHHHHHHHHHH
Q psy4797 217 ASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW----------NKLTRDEKYFISHVLAFFAASDGIV 284 (333)
Q Consensus 217 ~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~----------~~Ls~~Eq~~~~~iLafl~~lDslv 284 (333)
+++|||+|||||++++||++||+|||+++++++|.|||.+|+. .+++++++..++... ..+++..+
T Consensus 182 ~~lEGi~FysgF~~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~e~~~e~~~~i--~~l~~eav 257 (350)
T 4dr0_A 182 VYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFA--IDLLNQLY 257 (350)
T ss_dssp HHHHHTTTHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999974 467777766655544 44444444
No 13
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=100.00 E-value=1e-34 Score=279.33 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=147.9
Q ss_pred CcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh-----------
Q psy4797 98 RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE----------- 155 (333)
Q Consensus 98 ~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~----------- 155 (333)
...+++||+|||+|++|+++++|||+||||||++|+ .||+ +||+.||+++.. ++.
T Consensus 7 ~~inwn~i~y~~~~~~y~~~~~~fW~peEi~ls~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~ 83 (319)
T 3n37_A 7 SAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDI-PAWQ--TLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDAL 83 (319)
T ss_dssp CCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGH-HHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCS
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHHhcChhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcC
Confidence 457899999999999999999999999999999999 9999 899999997652 111
Q ss_pred ----HHHHHhh--hccchhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q psy4797 156 ----PYLFRIK--LAPGGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223 (333)
Q Consensus 156 ----~~~~~~~--~~~e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI~ 223 (333)
+.+++.| +|..|..+|+++++ ++.++|+|++++|+|++|++|+.++|++. .+++++||++++|||+
T Consensus 84 ~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~--~~~~~~va~~~lEgi~ 161 (319)
T 3n37_A 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGD--DPLKKKIASVFLESFL 161 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHH
Confidence 2222333 34445557887643 23579999999999999999999999874 4889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh----------ccCCHHHHHHHHhHHHHHHHHHHHH
Q psy4797 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW----------NKLTRDEKYFISHVLAFFAASDGIV 284 (333)
Q Consensus 224 FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~----------~~Ls~~Eq~~~~~iLafl~~lDslv 284 (333)
|||||++++||+++|+|||+++++++|.|||.+|+. .+++++++..++... ..+++..+
T Consensus 162 Fys~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~~~~~~~~~e~~~~i--~~l~~eav 230 (319)
T 3n37_A 162 FYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFA--FDLLLELY 230 (319)
T ss_dssp THHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH--HHHHHHHH
Confidence 999999999999999999999999999999999984 467777766665555 44445444
No 14
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=100.00 E-value=1.7e-34 Score=278.97 Aligned_cols=180 Identities=15% Similarity=0.181 Sum_probs=147.5
Q ss_pred CcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cC------------
Q psy4797 98 RRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RN------------ 154 (333)
Q Consensus 98 ~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~------------ 154 (333)
...+++||+|||+|++|+|++++||+||||||++|+ .||+ +||+.||+++.. ++
T Consensus 17 ~~inwn~i~y~~~~~~y~~~~~~fW~peEI~ls~D~-~dw~--~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~ 93 (329)
T 3dhz_A 17 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDI-QSWN--KMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAE 93 (329)
T ss_dssp CCCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGH-HHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCS
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHhhcChhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence 357899999999999999999999999999999999 9999 899999997652 11
Q ss_pred ---hHHHHHhh--hccchhhccccccC------ChhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q psy4797 155 ---EPYLFRIK--LAPGGICRYKVKKG------GKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIF 223 (333)
Q Consensus 155 ---~~~~~~~~--~~~e~~~~Ys~~~~------~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI~ 223 (333)
.+.+++.| +|..|..+|+++++ ++.++|+|++++|+|++|++|+.++|++. .+++++||++++|||+
T Consensus 94 ~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~--~~~~~~va~~~lEGi~ 171 (329)
T 3dhz_A 94 TMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGD--DPLKKKVASTLLESFL 171 (329)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHH
Confidence 12222333 34445557887643 23579999999999999999999999874 5789999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh----------ccCCHHHHHHHHhHHHHHHHHHHHH
Q psy4797 224 FSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW----------NKLTRDEKYFISHVLAFFAASDGIV 284 (333)
Q Consensus 224 FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~----------~~Ls~~Eq~~~~~iLafl~~lDslv 284 (333)
|||||++++||+++|+|||+++++++|.|||.+|+. .+++++++..++... ..+++..+
T Consensus 172 FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~~--~~l~~eav 240 (329)
T 3dhz_A 172 FYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYT--FDLMYDLY 240 (329)
T ss_dssp THHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH--HHHHHHHH
Confidence 999999999999999999999999999999999984 467777766665555 44444444
No 15
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=99.96 E-value=7.2e-31 Score=253.01 Aligned_cols=163 Identities=12% Similarity=0.211 Sum_probs=129.8
Q ss_pred cCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh-
Q psy4797 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE- 155 (333)
Q Consensus 88 ~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~- 155 (333)
+.||||++|+.||+++|++ +|+|++++||+||||||++|+ .||+ +||+.||+++.. |+.
T Consensus 13 ~~~~~l~~~~~~~~~~p~~------ly~k~~~~fW~peEIdls~D~-~dw~--~Lt~~Er~~~~~vL~~ft~~D~iv~~n 83 (323)
T 3ee4_A 13 TRSGSLAAGGLNWASLPLK------LFAGGNAKFWHPADIDFTRDR-ADWE--KLSDDERDYATRLCTQFIAGEEAVTED 83 (323)
T ss_dssp CCCGGGSTTCCCTTSHHHH------HHHHHHHTCCCGGGSCCTTHH-HHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhccCCCCCcccchHH------HHHHHHHcCCChHhcChhhhH-HHHH--HCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5799999999999999998 999999999999999999999 9999 899999997642 111
Q ss_pred ----------------HHHHHhhh--ccchhhccccccCC---hhhhhhhhhhcHHHHHHHHHH-HHHhh-----hccch
Q psy4797 156 ----------------PYLFRIKL--APGGICRYKVKKGG---KITGGKTIETMPCVKKKADWA-LRWIA-----DEASS 208 (333)
Q Consensus 156 ----------------~~~~~~~~--~~e~~~~Ys~~~~~---~~~~f~~~~~~p~i~~Ka~~i-~~~~~-----~~~~~ 208 (333)
+.+++.|. |..|..+|+++++. ..++|++++++|++++|..+. ...|. +++++
T Consensus 84 l~~~~~~v~~e~~pE~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~~f~~~~~~p~lr~k~~~~l~~~~~~~~~~~~~~~ 163 (323)
T 3ee4_A 84 IQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELPECLNALSADPSPAA 163 (323)
T ss_dssp THHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCGGGGTTCHHHHHHHHTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 11223333 33344478876431 234999999999999986432 22232 23456
Q ss_pred HHHHHHHHH-HHHHHHhhhHHHHHH-HHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797 209 FGERVIAFA-SVEGIFFSGSFASIF-WLKKRGLMPGLTFSNELISRDEDLSHW 259 (333)
Q Consensus 209 ~~~~lVa~~-~lEGI~FysgFa~~~-~L~~~g~M~g~~~~ie~I~rDEdlh~~ 259 (333)
+++++|+|+ ++|||+|||||++++ ||+++|+|||+++++++|.|||.+|+.
T Consensus 164 ~~~~lvaf~~~lEGi~FysgF~~~~~~l~~rg~m~G~~~~i~lI~RDE~~H~~ 216 (323)
T 3ee4_A 164 QVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMA 216 (323)
T ss_dssp HHHHHHHHCCCCCTTHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 999999996 999999999997555 899999999999999999999999975
No 16
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=99.73 E-value=4e-18 Score=161.48 Aligned_cols=91 Identities=74% Similarity=1.174 Sum_probs=87.5
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
+.-+.+++|+..+|+.+|.+||++||+.++++++||+++|++|++|+...+.+.+++||++++|++|+++|+||+++||+
T Consensus 35 ~~fW~peEI~ls~D~~dw~~L~~~Er~~~~~~l~~~~~~D~iv~~~l~~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~ 114 (286)
T 3olj_A 35 ASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSL 114 (286)
T ss_dssp HTCCCGGGSCCTTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChHHcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHhcCCccc
Q psy4797 322 LIDTYIKDQEE 332 (333)
Q Consensus 322 il~tl~~d~~e 332 (333)
|+++++.|++|
T Consensus 115 il~tl~~d~~e 125 (286)
T 3olj_A 115 LIDTYIKDPKE 125 (286)
T ss_dssp HHHHHCCCHHH
T ss_pred HHHHHcCCHHH
Confidence 99999998865
No 17
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=99.68 E-value=2.8e-17 Score=159.50 Aligned_cols=91 Identities=40% Similarity=0.684 Sum_probs=78.7
Q ss_pred cccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLL 322 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~i 322 (333)
.-+.+++|+..+|+.+|.+||++||+.++++++||+++|++|++|+...+++.+++||++++|++|+++|+||+++||+|
T Consensus 55 nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~nl~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~i 134 (345)
T 1jk0_B 55 SFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMM 134 (345)
T ss_dssp TCCCGGGCCCTTTSTTTTTSCTTHHHHHHHHHHHHC---------CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHhcCCcccC
Q psy4797 323 IDTYIKDQEER 333 (333)
Q Consensus 323 l~tl~~d~~e~ 333 (333)
+++++.|+++|
T Consensus 135 l~tl~~~~~e~ 145 (345)
T 1jk0_B 135 VDAFFKDPKNI 145 (345)
T ss_dssp HHHHSCSCTTS
T ss_pred HHHHCCCHHHH
Confidence 99999888764
No 18
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=99.67 E-value=6.7e-17 Score=155.64 Aligned_cols=90 Identities=22% Similarity=0.342 Sum_probs=84.1
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+..+|+.+|.+||++||+.++++|+||+++|++|++|+. .+.+.+++||++++|++|+++|+||+++||+
T Consensus 44 ~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~~~~~~D~iv~~nl~-~l~~~i~~pE~~~~l~~q~~~E~iHs~sYs~ 122 (324)
T 4a58_A 44 RNRWFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESHDIDHYYTEQKAMENVHGETYAN 122 (324)
T ss_dssp HHCCCGGGCCCHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChHhcCHhhhHHHHHhCCHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999975 7999999999999999999999999999999
Q ss_pred HHHHhcC-Cccc
Q psy4797 322 LIDTYIK-DQEE 332 (333)
Q Consensus 322 il~tl~~-d~~e 332 (333)
|+++++. ||.|
T Consensus 123 il~tl~~~d~~e 134 (324)
T 4a58_A 123 ILNMLFDGDRAA 134 (324)
T ss_dssp HHHHHTTTCHHH
T ss_pred HHHHhcCCCHHH
Confidence 9999974 6554
No 19
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=99.67 E-value=8.3e-17 Score=153.16 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=86.0
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+...|+.+|.+||++||+.++++++||+++|++|++++...+++.++.||++++|++|+++|+||+++||+
T Consensus 37 ~~fW~peEI~ls~D~~dw~~Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pe~~~~~~~q~~~E~iHs~sYs~ 116 (296)
T 3mjo_A 37 GNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSN 116 (296)
T ss_dssp HTCCCGGGSCGGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHcChhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHhcCCcc
Q psy4797 322 LIDTYIKDQE 331 (333)
Q Consensus 322 il~tl~~d~~ 331 (333)
|+++++.|++
T Consensus 117 il~tl~~~~e 126 (296)
T 3mjo_A 117 IFMTLASTPQ 126 (296)
T ss_dssp HHHHHSCHHH
T ss_pred HHHHhCCCHH
Confidence 9999998763
No 20
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=99.67 E-value=5.1e-17 Score=155.65 Aligned_cols=90 Identities=60% Similarity=0.905 Sum_probs=79.4
Q ss_pred cccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLL 322 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~i 322 (333)
.-+.+++|+..+|+.+|.+||++||+.++++++||+++|++|++++...+.+.+++||++++|++|+++|+||+++||+|
T Consensus 60 ~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~i 139 (311)
T 2o1z_A 60 SFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLL 139 (311)
T ss_dssp TCCCGGGCCCHHHHHHHHHSCHHHHHHHHHHHHHHHHC-------CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHhcCCccc
Q psy4797 323 IDTYIKDQEE 332 (333)
Q Consensus 323 l~tl~~d~~e 332 (333)
+++++.|+.+
T Consensus 140 l~tl~~d~~e 149 (311)
T 2o1z_A 140 IDNYIKDEKE 149 (311)
T ss_dssp HHHHCCCHHH
T ss_pred HHHHCCCHHH
Confidence 9999988755
No 21
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=99.66 E-value=1e-16 Score=157.92 Aligned_cols=90 Identities=73% Similarity=1.150 Sum_probs=86.7
Q ss_pred cccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLL 322 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~i 322 (333)
.-+.+++|+..+|+.+|.+||++||+.++++++||+++|++|++++...+.++++.||+++||++|+++|+||+++|++|
T Consensus 101 nfW~peEIdls~D~~dw~~Lt~~Er~~~~~vla~fa~~Dsiv~~nl~~~~~~~v~~pE~~~~~~~Q~~~EaiHsesYS~i 180 (390)
T 1h0o_A 101 SFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 180 (390)
T ss_dssp TCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHhcCCccc
Q psy4797 323 IDTYIKDQEE 332 (333)
Q Consensus 323 l~tl~~d~~e 332 (333)
+++++.|+.+
T Consensus 181 l~tl~~d~~e 190 (390)
T 1h0o_A 181 IDTYIKDPKE 190 (390)
T ss_dssp HHHHCCCHHH
T ss_pred HHHhCCCHHH
Confidence 9999998765
No 22
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=99.66 E-value=1.2e-16 Score=156.65 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred cccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLL 322 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~i 322 (333)
.-+.+++|+..+|+.+|.+||++||++++++|+||+++|++|++++...+++.+++||++++++.|+++|+||+++|++|
T Consensus 46 ~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~Dsiv~~~~~~~~~~~v~~pE~~~~l~~~~~~E~iHs~sYs~i 125 (375)
T 1mxr_A 46 FFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 125 (375)
T ss_dssp TCCCGGGSCCTTHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHhcCCcc
Q psy4797 323 IDTYIKDQE 331 (333)
Q Consensus 323 l~tl~~d~~ 331 (333)
+++++.|++
T Consensus 126 l~tl~~~~~ 134 (375)
T 1mxr_A 126 IRNIVNDPS 134 (375)
T ss_dssp HHTTCSCHH
T ss_pred HHHHCCCHH
Confidence 999998874
No 23
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=99.66 E-value=1.6e-16 Score=152.59 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=86.0
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+...|+.+|.+||++||+.++++++|++++|++|++++...++++++.||++++|++|+++|+||+++||+
T Consensus 28 ~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pe~~~~~~~q~~~E~iHs~sYs~ 107 (319)
T 3n37_A 28 SNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSS 107 (319)
T ss_dssp HTCCCGGGSCGGGGHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHhcCCcc
Q psy4797 322 LIDTYIKDQE 331 (333)
Q Consensus 322 il~tl~~d~~ 331 (333)
|+++++.+++
T Consensus 108 il~tl~~~~e 117 (319)
T 3n37_A 108 IFSTLCQTKD 117 (319)
T ss_dssp HHHHHSCHHH
T ss_pred HHHHHCCCHH
Confidence 9999998753
No 24
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii}
Probab=99.65 E-value=4.4e-17 Score=158.35 Aligned_cols=92 Identities=59% Similarity=0.875 Sum_probs=83.1
Q ss_pred CCcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 241 PGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320 (333)
Q Consensus 241 ~g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs 320 (333)
...-+.+++|+..+|+.+|.+||++||+.++++++||+++|++|++++...+.+.+++||++++|++|+++|+||+++|+
T Consensus 59 ~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs 138 (349)
T 2p1i_A 59 EASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYS 138 (349)
T ss_dssp HTTCCCGGGTCGGGCSHHHHHSCTTTHHHHHHHHHHHTTC-----CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCchhhcCccccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHhcCCccc
Q psy4797 321 LLIDTYIKDQEE 332 (333)
Q Consensus 321 ~il~tl~~d~~e 332 (333)
+|+++++.|+.|
T Consensus 139 ~il~tl~~d~~e 150 (349)
T 2p1i_A 139 LLIDNYIKDEKE 150 (349)
T ss_dssp HHHHHHTCSHHH
T ss_pred HHHHHHCCCHHH
Confidence 999999988765
No 25
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=99.64 E-value=2.5e-16 Score=151.97 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=85.8
Q ss_pred CcccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSL 321 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~ 321 (333)
..-+.+++|+...|+.+|.+||++||+.++++|+||+++|++|++++...++++++.||++++|++|+++|+||+++||+
T Consensus 38 ~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~ 117 (329)
T 3dhz_A 38 GNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSN 117 (329)
T ss_dssp HTCCCGGGSCGGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHhcCCcc
Q psy4797 322 LIDTYIKDQE 331 (333)
Q Consensus 322 il~tl~~d~~ 331 (333)
|+++++.+++
T Consensus 118 il~tl~~~~e 127 (329)
T 3dhz_A 118 IFMTLASTPQ 127 (329)
T ss_dssp HHHHHSCHHH
T ss_pred HHHHhCCCHH
Confidence 9999998753
No 26
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=99.64 E-value=2.6e-16 Score=152.64 Aligned_cols=90 Identities=26% Similarity=0.396 Sum_probs=86.2
Q ss_pred cccchhhhhcchhhhhhc--cCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWN--KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~--~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs 320 (333)
.-+.+++|+..+|+.+|. +||++||+.++++++|++++|++|++++...+++.+++||+++||++|+++|+||+++|+
T Consensus 49 ~fW~peEIdls~D~~dw~~~~Lt~~Er~~~~~~l~~~~~~D~iv~~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs 128 (346)
T 1syy_A 49 NNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFL 128 (346)
T ss_dssp TCCCGGGSCCHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHhhcchhhhHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999 999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHhcCCccc
Q psy4797 321 LLIDTYIKDQEE 332 (333)
Q Consensus 321 ~il~tl~~d~~e 332 (333)
+|+++++.|+++
T Consensus 129 ~il~tl~~~~~e 140 (346)
T 1syy_A 129 YICESLGLDEKE 140 (346)
T ss_dssp HHHHHHTCCHHH
T ss_pred HHHHHHCCCHHH
Confidence 999999988743
No 27
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=99.64 E-value=2.6e-16 Score=152.99 Aligned_cols=88 Identities=24% Similarity=0.271 Sum_probs=84.6
Q ss_pred cccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHH-HHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN-VHSEMYSL 321 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~-IH~~sYs~ 321 (333)
.-+.+++|+..+|+.+|.+||++||++++++|+||+++|++|++++...+++.+++||++++|++|+++|+ ||+++||+
T Consensus 49 nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~f~~~~Dsiv~~~~~~~~~~~v~~pE~~~~~~~q~~~E~aiHs~sYs~ 128 (350)
T 4dr0_A 49 QFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSN 128 (350)
T ss_dssp TCCCGGGSCCGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhcCCc
Q psy4797 322 LIDTYIKDQ 330 (333)
Q Consensus 322 il~tl~~d~ 330 (333)
|+++++.++
T Consensus 129 il~tl~~~~ 137 (350)
T 4dr0_A 129 IFMTLAPTE 137 (350)
T ss_dssp HHHHHSCHH
T ss_pred HHHHHcCch
Confidence 999998543
No 28
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=99.62 E-value=1.7e-16 Score=157.53 Aligned_cols=92 Identities=62% Similarity=1.015 Sum_probs=87.5
Q ss_pred Ccccchhhhhcchhhhhhc-cCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 242 GLTFSNELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYS 320 (333)
Q Consensus 242 g~~~~ie~I~rDEdlh~~~-~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs 320 (333)
..-+.+++|+..+|+.+|. +||++||+.++++++||+++|++|++++...+.++++.||+++||++|+++|+||+++|+
T Consensus 125 anfW~peEIdls~D~~dw~~~Lt~~Er~~~~~vLa~fa~~Dsiv~~nl~~~l~~~v~~pE~~~~~~~Q~~~EaIHsesYS 204 (419)
T 1jk0_A 125 ASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYS 204 (419)
T ss_dssp TTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHTTSSHHHHHHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCchhhcchhccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999 999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHhcCCcccC
Q psy4797 321 LLIDTYIKDQEER 333 (333)
Q Consensus 321 ~il~tl~~d~~e~ 333 (333)
+|+++++.|+.+|
T Consensus 205 ~il~tl~~d~~e~ 217 (419)
T 1jk0_A 205 LLIDTYIKDPKES 217 (419)
T ss_dssp HHHHHHCCCHHHH
T ss_pred HHHHHhCCCHHHH
Confidence 9999999987653
No 29
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=99.61 E-value=1.1e-15 Score=147.13 Aligned_cols=88 Identities=17% Similarity=0.311 Sum_probs=82.9
Q ss_pred cccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcCh---HHHHHHHHHHHHHHHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQI---TEARCFYGFQIAMENVHSEMY 319 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~---pE~~~~~a~Q~~~E~IH~~sY 319 (333)
.-+.+++|+..+|+.+|.+||++||+.++++++||+++|++|++|+. .+.+.+++ ||+++||++|+++|+||+++|
T Consensus 39 ~fW~peEIdls~D~~dw~~Lt~~Er~~~~~vL~~ft~~D~iv~~nl~-~~~~~v~~e~~pE~~~~l~~q~~~EaiHs~sY 117 (323)
T 3ee4_A 39 KFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQ-PFMSAMRAEGRLADEMYLTQFAFEEAKHTQVF 117 (323)
T ss_dssp TCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhcccCChHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999986 78888875 999999999999999999999
Q ss_pred HHHHHHhcCCcc
Q psy4797 320 SLLIDTYIKDQE 331 (333)
Q Consensus 320 s~il~tl~~d~~ 331 (333)
|+|+++++.|++
T Consensus 118 s~il~tl~~~~~ 129 (323)
T 3ee4_A 118 RMWLDAVGISED 129 (323)
T ss_dssp HHHHHHHTCCSC
T ss_pred HHHHHHhCCCHH
Confidence 999999988764
No 30
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=99.60 E-value=6.3e-16 Score=149.91 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=81.6
Q ss_pred cccchhhhhcchhhhhhccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 243 LTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLL 322 (333)
Q Consensus 243 ~~~~ie~I~rDEdlh~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~i 322 (333)
.-+.+++|+..+|+.+|.+||++||+.++++++||+++|++|++++ ..+.+.++.||+++||++|+++|+||+++||+|
T Consensus 51 ~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~l-~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~i 129 (346)
T 2rcc_A 51 NFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYS-MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYV 129 (346)
T ss_dssp TCCCGGGSCCHHHHHHGGGSCHHHHHHHHHHHHHHHHTTTTCCCHH-HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999997 899999999999999999999999999999999
Q ss_pred HHHhc
Q psy4797 323 IDTYI 327 (333)
Q Consensus 323 l~tl~ 327 (333)
+++++
T Consensus 130 l~tl~ 134 (346)
T 2rcc_A 130 LSSLV 134 (346)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 99996
No 31
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=73.28 E-value=24 Score=27.54 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=54.1
Q ss_pred hccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4797 259 WNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTY 326 (333)
Q Consensus 259 ~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~il~tl 326 (333)
..+||++.+...+-+-+. ...+.+.|+...+....++|+++..+.--+-.|..|.......|..+
T Consensus 10 ~~~ls~~~~d~~rai~aL---~~EleAI~~Y~q~A~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~ 74 (95)
T 1zpy_A 10 TQELSDETRDMHRAIISL---REELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp GGGSCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999998888777643 45556777778888899999999999999999999999998888876
No 32
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=64.88 E-value=47 Score=25.90 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=53.6
Q ss_pred hccCCHHHHHHHHhHHHHHHHHHHHHhhhhhHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4797 259 WNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTY 326 (333)
Q Consensus 259 ~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~~~~~~~vt~pE~~~~~a~Q~~~E~IH~~sYs~il~tl 326 (333)
..+||++-++..+-+.+ ++..+.+.++.........+|+++..+..-+-.|--|......+|+.+
T Consensus 10 ~e~Ls~e~~d~~Rai~s---l~~EleAI~~Y~q~a~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~ 74 (95)
T 3k6c_A 10 TQELSDETRDMHRAIIS---LREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp GGGSCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35899998877776653 445666777778888889999999999999999999999998888865
No 33
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=26.99 E-value=22 Score=26.34 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.1
Q ss_pred cccceeeeeeeCCceeeecccc
Q psy4797 23 LSGAVVNTLDFGSGGWWFEPNI 44 (333)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ 44 (333)
-.|-+|-.|+.+..|||+--+.
T Consensus 27 k~Gd~VeVl~k~~~gwW~vr~~ 48 (71)
T 1v1c_A 27 REGQYVEVLDAAHPLRWLVRTK 48 (71)
T ss_dssp CTTCEEEEEEEEETTEEEEEEC
T ss_pred cCCCEEEEEEcCCCCEEEEEec
Confidence 4699999999999999997554
No 34
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Probab=25.51 E-value=2.7e+02 Score=26.09 Aligned_cols=67 Identities=16% Similarity=0.031 Sum_probs=43.7
Q ss_pred hhccCCHHHHHHHHhHHHHHHHHHHHHhhhhh-----HhHhhh--cC--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4797 258 HWNKLTRDEKYFISHVLAFFAASDGIVNENLV-----ERFTQE--VQ--ITEARCFYGFQIAMENVHSEMYSLLID 324 (333)
Q Consensus 258 ~~~~Ls~~Eq~~~~~iLafl~~lDslv~enl~-----~~~~~~--vt--~pE~~~~~a~Q~~~E~IH~~sYs~il~ 324 (333)
.|..||+++|..+...-..--..+++.-|.++ ..++.. -. ...++......+..|+-|+.++...++
T Consensus 73 ~w~~l~~eqR~~L~~~e~~~~~s~~I~~E~~lv~~~~r~i~~~~~p~~~~~~~~ya~ltei~DE~~Hs~Mf~~~~~ 148 (336)
T 3chh_A 73 LFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHMLAID 148 (336)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999888777666666666654432 222222 12 333433324445789999999999988
Done!