RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4797
(333 letters)
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase.
Length = 324
Score = 164 bits (417), Expect = 3e-48
Identities = 59/80 (73%), Positives = 68/80 (85%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL W KLT DE++FISHVLAFFAASDGIV ENL RF +EVQ+ EAR FYGFQIA+EN
Sbjct: 42 ADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIEN 101
Query: 314 VHSEMYSLLIDTYIKDQEER 333
+HSEMYSLL+DTYIKD +E+
Sbjct: 102 IHSEMYSLLLDTYIKDPKEK 121
Score = 152 bits (386), Expect = 1e-43
Identities = 59/72 (81%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 185 IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
IET+PCV KKADWALRWI D ++SF ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLT
Sbjct: 128 IETIPCVAKKADWALRWI-DSSASFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLT 186
Query: 245 FSNELISRDEDL 256
FSNELISRDE L
Sbjct: 187 FSNELISRDEGL 198
Score = 92.4 bits (230), Expect = 3e-21
Identities = 32/41 (78%), Positives = 36/41 (87%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
EPLL +NP RF +FPI+Y IW+MYKKAEASFWTAEEVDLS
Sbjct: 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLS 41
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small
subunit; Provisional.
Length = 330
Score = 157 bits (398), Expect = 2e-45
Identities = 60/86 (69%), Positives = 68/86 (79%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I DL W KL E++FI HVLAFFAASDGIV ENL +RF +EVQ+ EARCFYGF
Sbjct: 47 EEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGIVLENLAQRFMREVQVPEARCFYGF 106
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QIAMEN+HSE YSLLIDTYI D+EE+
Sbjct: 107 QIAMENIHSETYSLLIDTYITDEEEK 132
Score = 143 bits (363), Expect = 3e-40
Identities = 54/72 (75%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Query: 185 IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
IET+P +KKKA+WA +WI S F ER++AFA+VEGIFFSGSF +IFWLKKRGLMPGLT
Sbjct: 139 IETIPAIKKKAEWAAKWINSSNS-FAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLT 197
Query: 245 FSNELISRDEDL 256
FSNELISRDE L
Sbjct: 198 FSNELISRDEGL 209
Score = 91.8 bits (228), Expect = 4e-21
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLS 130
++EN E EPLL++NP RFV+FPI+Y DIW+MYKKAEASFWTAEE+DL
Sbjct: 5 MKENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLG 52
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain.
Length = 281
Score = 130 bits (328), Expect = 1e-35
Identities = 42/79 (53%), Positives = 53/79 (67%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
D+ W KL E+ F S V AF AA+DGIVNENL ER + E Q + +YG QIA+ENV
Sbjct: 41 DIPDWEKLNEAEREFYSFVFAFLAAADGIVNENLAERLSAEFQQKDILHYYGEQIAIENV 100
Query: 315 HSEMYSLLIDTYIKDQEER 333
HSE+YSL+ T D++ER
Sbjct: 101 HSEVYSLIQLTLFNDEKER 119
Score = 129 bits (326), Expect = 2e-35
Identities = 48/72 (66%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 185 IETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLT 244
IET P +++KA W LRW+ D A S E++IAFA VEGIFFS SFASI +L+KRGLMPG
Sbjct: 126 IETDPAIQRKAQWLLRWVRD-AESLAEKLIAFALVEGIFFSSSFASIAYLRKRGLMPGTC 184
Query: 245 FSNELISRDEDL 256
SNELISRDE L
Sbjct: 185 QSNELISRDEAL 196
Score = 66.2 bits (162), Expect = 2e-12
Identities = 29/42 (69%), Positives = 36/42 (85%), Gaps = 2/42 (4%)
Query: 90 EPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
EPLLR+N +RF +PIQ+ DIW++YKKAEA+ W AEEVDLSK
Sbjct: 1 EPLLRENSKRF--YPIQHPDIWELYKKAEANRWLAEEVDLSK 40
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit,
ferritin-like diiron-binding domain. Ribonucleotide
Reductase, R2/beta subunit (RNRR2) is a member of a
broad superfamily of ferritin-like diiron-carboxylate
proteins. The RNR protein catalyzes the conversion of
ribonucleotides to deoxyribonucleotides and is found in
all eukaryotes, many prokaryotes, several viruses, and
few archaea. The catalytically active form of RNR is a
proposed alpha2-beta2 tetramer. The homodimeric alpha
subunit (R1) contains the active site and redox active
cysteines as well as the allosteric binding sites. The
beta subunit (R2) contains a diiron cluster that, in its
reduced state, reacts with dioxygen to form a stable
tyrosyl radical and a diiron(III) cluster. This
essential tyrosyl radical is proposed to generate a
thiyl radical, located on a cysteine residue in the R1
active site that initiates ribonucleotide reduction. The
beta subunit is composed of 10-13 helices, the 8 longest
helices form an alpha-helical bundle; some have 2
addition beta strands. Yeast is unique in that it
assembles both homodimers and heterodimers of RNRR2. The
yeast heterodimer, Y2Y4, contains R2 (Y2) and a R2
homolog (Y4) that lacks the diiron center and is
proposed to only assist in cofactor assembly, and
perhaps stabilize R1 (Y1) in its active conformation.
Length = 288
Score = 126 bits (319), Expect = 3e-34
Identities = 48/79 (60%), Positives = 57/79 (72%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
+DL W KLT E++FI VLAF AA D IV ENLVE F++ VQI EAR FYGFQ MEN
Sbjct: 32 KDLKDWEKLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIPEARAFYGFQAFMEN 91
Query: 314 VHSEMYSLLIDTYIKDQEE 332
+HSE YS ++DT KD+E
Sbjct: 92 IHSESYSYILDTLGKDEER 110
Score = 108 bits (271), Expect = 3e-27
Identities = 44/74 (59%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 185 IETMPCVKKKADWALRWIAD----EASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLM 240
IET P +KKKADW LRW + SF ER++AFA +EGIFF FA+IFWL +RG M
Sbjct: 117 IETDPALKKKADWILRWYDNLDDNTKESFAERLVAFAILEGIFFYSGFAAIFWLARRGKM 176
Query: 241 PGLTFSNELISRDE 254
PGL ELISRDE
Sbjct: 177 PGLAEIIELISRDE 190
Score = 63.0 bits (154), Expect = 2e-11
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 100 FVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
F + PI+Y W++YKKAEA+FWT EE+DLSK
Sbjct: 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSK 32
>gnl|CDD|223286 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide
transport and metabolism].
Length = 348
Score = 97.4 bits (243), Expect = 5e-23
Identities = 27/79 (34%), Positives = 35/79 (44%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
D+ W KL+ DEK I VLAF D I N V + V E Q ME
Sbjct: 58 NDIKDWKKLSDDEKDLIIRVLAFLTLLDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEA 117
Query: 314 VHSEMYSLLIDTYIKDQEE 332
+H+ YS + DT ++E
Sbjct: 118 IHARSYSYIFDTLGPTEDE 136
Score = 87.0 bits (216), Expect = 2e-19
Identities = 49/216 (22%), Positives = 72/216 (33%), Gaps = 58/216 (26%)
Query: 88 ETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVD------------------- 128
E + + PI+Y ++YKK A+FW EE+D
Sbjct: 15 EPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKKLSDDEKDLI 74
Query: 129 --------LSKVVVTNFEIRAL----KTGEEKAS----------HSRNEPYLFRIKLAPG 166
L + N + AL T EE+A H+R+ Y+F
Sbjct: 75 IRVLAFLTLLDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTE 134
Query: 167 GICRYKVKKGGKITGGKTIETMPCVKKKADWALR--------WIADEASSFGERVIAFAS 218
+ T +++KA+ LR + V+A
Sbjct: 135 DEDEVFDDW---------VATNEILQEKAEIILRYYDDLGDDPDDPLEEFLLKLVVASVI 185
Query: 219 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 254
+EGI F FA +L +RG MPG LI RDE
Sbjct: 186 LEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDE 221
>gnl|CDD|236591 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta;
Reviewed.
Length = 324
Score = 56.4 bits (137), Expect = 6e-09
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
DL W KL+ +EK + V D + N N + ++ E ME
Sbjct: 43 NDLKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPDITTPEEEAVLANIAFMEA 102
Query: 314 VHSEMYSLLIDTYIKDQEE 332
VH++ YS + T +E
Sbjct: 103 VHAKSYSYIFSTLCSPEEI 121
Score = 30.9 bits (71), Expect = 0.83
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 212 RVIAFASV--EGIFFSGSFASIFWLKKRGLMPGLTFSNELIS---RDE 254
R A ASV EG F F +L ++G M G + ++I RDE
Sbjct: 154 RKAAVASVFLEGFLFYSGFYYPLYLARQGKMTG---TAQIIRLIIRDE 198
Score = 28.6 bits (65), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 104 PIQYQDIWKMYKKAEASFWTAEEVDLSK 131
I+ ++ +K+ A+FW EEV LS
Sbjct: 16 KIEDPWDYEAWKRLTANFWLPEEVPLSN 43
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
gluaredoxin/ribonucleoside-diphosphate reductase subunit
beta; Provisional.
Length = 410
Score = 47.3 bits (112), Expect = 6e-06
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 250 ISRDEDLSHWN--KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
I ED++ W K+T+ EK +I+++L F SD V +N ++F + E R G
Sbjct: 125 IDLSEDVTDWKNGKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLFKNNEIRNMLGS 184
Query: 308 QIAMENVHSEMYSLLIDT 325
A E +H Y+LL DT
Sbjct: 185 FAAREGIHQRAYALLNDT 202
>gnl|CDD|235968 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit
beta; Validated.
Length = 369
Score = 40.4 bits (95), Expect = 8e-04
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 189 PCVKKKADWAL---RWIADEASSFG---------ERVIAFASV-EGIFFSGSFASIFWLK 235
P ++ K ++ + R + D G +IAF + EGIFF F I L
Sbjct: 170 PSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLG 229
Query: 236 KRGLMPGLTFSNELISRDEDLSHWN 260
++ M G+ + I RDE + H N
Sbjct: 230 RQNKMTGIAEQYQYILRDESM-HLN 253
Score = 32.3 bits (74), Expect = 0.37
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 255 DLSHW---NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAM 311
D++ W N LT DE+ + L FF+ +D +V N+V + + E R + Q
Sbjct: 81 DIALWKSPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFE 140
Query: 312 ENVHSEMYSLLIDTYIKDQEE 332
E +H+ Y ++++ D+ E
Sbjct: 141 EAIHTHAYQYIVESLGLDEGE 161
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1.
The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
Length = 171
Score = 30.6 bits (70), Expect = 0.60
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 247 NELISRDEDLSHWNKLTRDE-KYFISHVLAFFAASDGIVNENLVERFTQEVQITEA 301
E+IS + +++ ++ K +L F E+LVE+ Q +
Sbjct: 103 PEIISVLNSCTEHGQVSEEKRKKIYKFLLEFITKD--KQKESLVEKLCQRFLAANS 156
>gnl|CDD|213892 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate reductase, class
1b, beta subunit. Members of this family are NrdF, the
beta subunit of class 1b ribonucleotide reductase. This
form uses a dimanganese moiety associated with a
tyrosine radical to reduce the cellular requirement for
iron [Purines, pyrimidines, nucleosides, and
nucleotides, 2'-Deoxyribonucleotide metabolism].
Length = 313
Score = 30.6 bits (70), Expect = 0.94
Identities = 14/72 (19%), Positives = 25/72 (34%)
Query: 255 DLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENV 314
DL W L+ +E+ V D + + + + ME+V
Sbjct: 36 DLDSWRTLSPEEQDLYKKVFGGLTLLDTLQGTVGMPALIPDADTLHEKAVLNNMGFMESV 95
Query: 315 HSEMYSLLIDTY 326
H++ YS + T
Sbjct: 96 HAKSYSSIFSTL 107
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 30.5 bits (69), Expect = 1.1
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 130 SKVVVTNFEIRALKTGEE-KASHSRNEPYLFRIK-LAPGGICRYK-VKKGGKIT 180
S VV N++ L G+E S++R EP FR+ + PG K +KKGGKI
Sbjct: 164 SDTVVVNYK-GTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIK 216
>gnl|CDD|163627 cd07384, MPP_Cdc1_like, Saccharomyces cerevisiae CDC1 and related
proteins, metallophosphatase domain. Cdc1 (also known
as XlCdc1 in Xenopus laevis) is an endoplasmic
reticulum-localized transmembrane lipid phosphatase with
a metallophosphatase domain facing the ER lumen. In
budding yeast, the gene encoding CDC1 is essential while
nonlethal mutations cause defects in Golgi inheritance
and actin polarization. Cdc1 mutant cells accumulate an
unidentified phospholipid, suggesting that Cdc1 is a
lipid phosphatase. Cdc1 mutant cells also have highly
elevated intracellular calcium levels suggesting a
possible role for Cdc1 in calcium regulation. The 5'
flanking region of Cdc1 is a regulatory region with
conserved binding site motifs for AP1, AP2, Sp1, NF-1
and CREB. DNA polymerase delta consists of at least
four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group
also contains Saccharomyces cerevisiae TED1 (Trafficking
of Emp24p/Erv25p-dependent cargo disrupted 1), which
acts together with Emp24p and Erv25p in cargo exit from
the ER, and human MPPE1. The human MPPE1 gene is a
candidate susceptibility gene for bipolar disorder.
These proteins belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 171
Score = 29.6 bits (67), Expect = 1.3
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 228 FASIFWLKKRGLMPGLTFS---NELISRDEDLSHWNKLTRDEKYFI--SHV 273
F IF+L GL + N I E +S + R E+YFI +H+
Sbjct: 74 FKKIFFLPSNGLEDIPVYYVPGNHDIGYGEVISFPEVVDRFERYFILLTHI 124
>gnl|CDD|192528 pfam10307, DUF2410, Hypothetical protein (DUF2410). This is a
family of proteins conserved in fungi. The function is
not known.There are two characteristic sequence motifs,
GGWW and TGR.
Length = 200
Score = 29.6 bits (67), Expect = 1.8
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 24 SGAVVNTL----DFGSGGWWFEPNI 44
+G + L F +GGWW +P I
Sbjct: 11 NGPTIGLLQSPESFANGGWWHDPRI 35
>gnl|CDD|145868 pfam02938, GAD, GAD domain. This domain is found in some members
of the GatB and aspartyl tRNA synthetases.
Length = 94
Score = 27.6 bits (62), Expect = 3.4
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 159 FRIKLAPGGICR-YKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFA 217
F L GG + V G ++ K I+ L A FG + +A+
Sbjct: 1 FSEALKKGGSVKALCVPGGAGLSR-KQID-----------ELE---RFAKEFGAKGLAWI 45
Query: 218 SVEGIFFSGSFASIF 232
VEG +G A
Sbjct: 46 KVEGGGHTGPIAKFL 60
>gnl|CDD|225955 COG3421, COG3421, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 812
Score = 29.1 bits (65), Expect = 4.2
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 22 NLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSA 81
NLS + L S + + + F QN +L LQ I + +
Sbjct: 258 NLSFDDLENLFNHSRNAFNKAAKSFFDKQNHTPNLVALLQNKFKESVQINNNNE------ 311
Query: 82 PVQENVETEPLL-----RDNPRRFVIFPI 105
+E E+ LL RDNP R VIF +
Sbjct: 312 --KELEESMLLLNSLEDRDNPIR-VIFSV 337
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta;
Reviewed.
Length = 376
Score = 28.0 bits (63), Expect = 8.0
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 220 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
E I F SFA F +R LM G LI+RDE L
Sbjct: 205 EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241
>gnl|CDD|236242 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit
beta; Validated.
Length = 311
Score = 27.7 bits (62), Expect = 8.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAA 279
D W KL+ +E+ + + + A F A
Sbjct: 48 RDAEDWEKLSDEERDYATRLCAQFIA 73
>gnl|CDD|235663 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1244
Score = 27.9 bits (63), Expect = 9.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 305 YGFQIAMENVHSEMYSLLIDTYIKDQEER 333
+G+ V MY + DTY+ D+E R
Sbjct: 1168 FGWDATTGVVDDWMYEAVADTYVLDEENR 1196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.410
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,026,004
Number of extensions: 1633492
Number of successful extensions: 1377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 43
Length of query: 333
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 236
Effective length of database: 6,635,264
Effective search space: 1565922304
Effective search space used: 1565922304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)