RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4797
(333 letters)
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 117 bits (293), Expect = 2e-31
Identities = 108/212 (50%), Positives = 122/212 (57%), Gaps = 46/212 (21%)
Query: 87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFWTAEEVDLSK
Sbjct: 1 VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHF 60
Query: 132 ------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG 167
V E R + + +E Y I
Sbjct: 61 ISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 120
Query: 168 ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
+ IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGS
Sbjct: 121 PKEREYLF-------NAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGS 173
Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259
FASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 174 FASIFWLKKRGLMPGLTFSNELISRDEGLHCD 205
Score = 69.8 bits (170), Expect = 2e-14
Identities = 65/83 (78%), Positives = 73/83 (87%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + +D+ HW L DE++FISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct: 39 EEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 98
Query: 308 QIAMENVHSEMYSLLIDTYIKDQ 330
QIAMEN+HSEMYSLLIDTYIKD
Sbjct: 99 QIAMENIHSEMYSLLIDTYIKDP 121
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 110 bits (275), Expect = 3e-28
Identities = 98/311 (31%), Positives = 145/311 (46%), Gaps = 51/311 (16%)
Query: 54 KDLTNNLQQSKLSDSPIKDKSTLKQVSAP---VQENVETEPLLRDNPRRFVIFPIQYQDI 110
+ +++ + KLS K+ LK ++E + EPLL ++ R V+FPI+Y +I
Sbjct: 12 NRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEI 71
Query: 111 WKMYKKAEASFWTAE------------------EVDLSKVVVTNFEIRALKTGEEKASHS 152
W+ YK+AEASFWTAE E V+ F E +
Sbjct: 72 WQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENF 131
Query: 153 RNEPYLFRIKLAPGGIC---------------RYKVKKGGKITGGKTIETMPCVKKKADW 197
E + K G Y I T+P + +KA+W
Sbjct: 132 STEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEW 191
Query: 198 ALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLS 257
ALRWI D + FGER++AFAS+EG+FFSGSFASIFWLKKRG+MPGLTFSNELI RDE L
Sbjct: 192 ALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGL- 250
Query: 258 HWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSE 317
+ L F + + + T+ V+I + +A+ ++++
Sbjct: 251 ----------HTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNAD 300
Query: 318 MYSLLIDTYIK 328
+ ++ Y++
Sbjct: 301 L----MNQYVE 307
Score = 73.2 bits (179), Expect = 3e-15
Identities = 57/87 (65%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 248 ELISRDEDLSHWN-KLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYG 306
E I +D+ WN ++ +E++FIS VLAFFAASDGIVNENLVE F+ EVQI EA+ FYG
Sbjct: 86 EEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYG 145
Query: 307 FQIAMENVHSEMYSLLIDTYIKDQEER 333
FQI +EN+HSE YSLLIDTYIKD +E
Sbjct: 146 FQIMIENIHSETYSLLIDTYIKDPKES 172
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 91.4 bits (226), Expect = 7e-22
Identities = 62/206 (30%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTA-----------------E 125
++E + E LL +N RRFV+FPI+Y +IW YKK EASFWTA +
Sbjct: 8 MKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDD 67
Query: 126 EVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVK----------- 174
+ ++ + + + K G +
Sbjct: 68 QKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDA 127
Query: 175 ---KGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASI 231
I K I +P VK KA + RWI+++ S + ER++AFA+ EGIF +G++AS+
Sbjct: 128 FFKDPKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASM 187
Query: 232 FWLKKRGLMPGLTFSNELISRDEDLS 257
FWL + +MPGL +N I RD
Sbjct: 188 FWLTDKKIMPGLAMANRNICRDRGAY 213
Score = 64.4 bits (156), Expect = 2e-12
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I +D + KLT D+K +I ++LA +SD +VN+ L+E F+ ++Q E + FYGF
Sbjct: 50 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 109
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEER 333
QI MEN++SE+YS+++D + KD +
Sbjct: 110 QIMMENIYSEVYSMMVDAFFKDPKNI 135
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 80.6 bits (198), Expect = 1e-17
Identities = 16/84 (19%), Positives = 27/84 (32%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D + L EK+ L + D I + + I E +
Sbjct: 51 EEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 110
Query: 308 QIAMENVHSEMYSLLIDTYIKDQE 331
E +HS Y+ +I + D
Sbjct: 111 WAFSETIHSRSYTHIIRNIVNDPS 134
Score = 54.4 bits (130), Expect = 5e-09
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 77 KQVSAPVQENVETEPLLRDNPRRFVIF-PIQYQDIWKMYKKAEASFWTAEEVDLSK 131
+ + + EP+ P + +Y K+ +K + FW EEVD+S+
Sbjct: 2 YTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSR 57
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 74.8 bits (183), Expect = 6e-16
Identities = 17/85 (20%), Positives = 26/85 (30%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E + D+ W L+ E+ V D I N +
Sbjct: 29 EKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSN 88
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEE 332
ME VH+ YS + T + +E
Sbjct: 89 ISFMEAVHARSYSSIFSTLCQTKEV 113
Score = 55.2 bits (132), Expect = 2e-09
Identities = 37/228 (16%), Positives = 67/228 (29%), Gaps = 33/228 (14%)
Query: 105 IQYQDIWKMYKKAEASFW-----------------TAEEVDLSKVVVTNF---------- 137
IQ +++ + ++FW +A E L+ V T
Sbjct: 9 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIA 68
Query: 138 ----EIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKK 193
+ T E+A S + I + E P +++
Sbjct: 69 GAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQR 128
Query: 194 KADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
KA L + ++ IA +E F F + RG + LI RD
Sbjct: 129 KAQIILAHY--VSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 186
Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEA 301
E + + + + + L+E + E++ TEA
Sbjct: 187 EAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEA 234
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 72.5 bits (177), Expect = 4e-15
Identities = 19/85 (22%), Positives = 29/85 (34%)
Query: 248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
E I D+ WNK+T E+ V D I + + Y
Sbjct: 31 EKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTN 90
Query: 308 QIAMENVHSEMYSLLIDTYIKDQEE 332
ME+VH++ YS + T +
Sbjct: 91 IAFMESVHAKSYSNIFMTLASTPQI 115
Score = 61.7 bits (149), Expect = 1e-11
Identities = 24/186 (12%), Positives = 53/186 (28%), Gaps = 33/186 (17%)
Query: 105 IQYQDIWKMYKKAEASFWTAEEVDLSK-----------------VVVTNFEIRALKTGEE 147
I + +++ + +FW E++ +S V T + G
Sbjct: 11 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTV 70
Query: 148 KASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGG--------------KTIETMPCVKK 193
A + + I + + + E +++
Sbjct: 71 GAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQR 130
Query: 194 KADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 253
KA + + + ++ +A +E F F +L R + LI RD
Sbjct: 131 KAKIIMSYYNGD--DPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRD 188
Query: 254 EDLSHW 259
E + +
Sbjct: 189 ESVHGY 194
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 68.6 bits (167), Expect = 1e-13
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 248 ELISRDEDLSHW--NKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFY 305
I +D+ W ++L+ DE+ I L FF+ ++ +V N+V + V EAR +
Sbjct: 53 TEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYL 112
Query: 306 GFQIAMENVHSEMYSLLIDTYIKDQEE 332
Q E VH+ + + ++ D++E
Sbjct: 113 LRQAFEEAVHTHTFLYICESLGLDEKE 139
Score = 59.0 bits (142), Expect = 2e-10
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 102 IFPIQYQDIWKMYKKAEASFWTAEEVDLSK 131
+ PI+Y+ W+ Y A+ W E+ + K
Sbjct: 30 LVPIKYKWAWEHYLNGCANNWLPTEIPMGK 59
Score = 50.1 bits (119), Expect = 1e-07
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 184 TIETMPCVKKKADWALRWIA------------DEASSFGERVIAFASVE-GIFFSGSFAS 230
+K K D+ + + F + ++ + + GIFF F
Sbjct: 143 AYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVM 202
Query: 231 IFWLKKRGLMPGLTFSNELISRDEDLS 257
I ++ M G+ + I RDE +
Sbjct: 203 ILSFHRQNKMIGIGEQYQYILRDETIH 229
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
[TaxId: 274]}
Length = 145
Score = 27.1 bits (60), Expect = 1.7
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 140 RALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWAL 199
A K +EK + + ++ + ++ G +E P +++ AL
Sbjct: 34 DACKIIQEKTGQEPLKVFKQAVE-NVKPRMEVRSRRVGGANYQVPMEVSP--RRQQSLAL 90
Query: 200 RWIADEASSFGERVIAFA 217
RW+ A+ ER A
Sbjct: 91 RWLVQAANQRPERRAAVR 108
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 26.0 bits (57), Expect = 4.0
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 131 KVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPC 190
+V + E A ++G+ + R K ++ G T +E P
Sbjct: 39 SIVYSALETLAQRSGKSELEAFEVALENVRPT------VEVKSRRVGGSTYQVPVEVRP- 91
Query: 191 VKKKADWALRWIADEASSFGER 212
++ A+RWI + A G++
Sbjct: 92 -VRRNALAMRWIVEAARKRGDK 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.410
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,823
Number of extensions: 57947
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 24
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)