BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4798
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
Length = 482
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 200/331 (60%), Gaps = 53/331 (16%)
Query: 238 GKSLGKAIFLRKALLKINKDNLGFPA----------LLVCNGLPYFWSKSEELGETYFGF 287
G+ + F + L +++K F + +L+ G+PY W S Y GF
Sbjct: 56 GQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGRFC-GYAGF 114
Query: 288 HKN-EIVTSCLFIVLFNIFSTVIGLPISFYHHFVLEEKHGFNKQTYGFFVKDQIKSFIVS 346
EI S +F++L +FS + GLP S Y+ FV+EEKHGFN+QT GF
Sbjct: 115 GPEYEITQSLVFLLLATLFSALAGLPWSLYNTFVIEEKHGFNQQTLGF------------ 162
Query: 347 LILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWV 406
F+KD IK F+V+ + +P++ ++YII++GG+ F+Y W+
Sbjct: 163 --------------------FMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWL 202
Query: 407 FIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSE 466
F +++SL L+TIY ++IAPLFDK+TPLP+G+LK IE ++ S+ FPL K+YVVEGSKRS
Sbjct: 203 FTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSS 262
Query: 467 HSNAYFYGFFKNKRIVLFDTLLKDYVPLNAD---------KKDKAGDSEPLISTEGANKK 517
HSNAYFYGFFKNKRIVLFDTLL++Y LN D + ++ G+SE + + K+
Sbjct: 263 HSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQ 322
Query: 518 GCDTEEVLAVLAHELGHWKYNHVLKSMILKK 548
GC EEVLAVL HELGHWK H +K++I+ +
Sbjct: 323 GCKNEEVLAVLGHELGHWKLGHTVKNIIISQ 353
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/190 (55%), Positives = 136/190 (71%), Gaps = 9/190 (4%)
Query: 82 SSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNAD---------KKDKSGDSEPLIST 132
SKRS HSNAYFYGFFKNKRIVLFDTLL++Y LN D + ++ G+SE + +
Sbjct: 257 GSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAK 316
Query: 133 EGANKKGCDTEEVLAVLAHELGHWKYNHVLKSMIVMQLNLLFMLYSFQYLFQYPPLYSAF 192
K+GC EEVLAVL HELGHWK H +K++I+ Q+N + F L L++AF
Sbjct: 317 VKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAF 376
Query: 193 GFYDSQPILLGLIIVLQYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSLGKAIFLRKALL 252
GFYDSQP L+GL+I+ Q++F+PYN+++ F +T ++RRFEFQADAF K LGKA L AL+
Sbjct: 377 GFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALI 436
Query: 253 KINKDNLGFP 262
K+NKDNLGFP
Sbjct: 437 KLNKDNLGFP 446
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 2 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYS 61
E E +IF ++ FSW V+L+E +L+ RQRR+Y TT VP ++ MD+E+FEKSR Y
Sbjct: 12 EMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQ 71
Query: 62 LDKNVFSMFKETVSNVMNTV 81
LDK+ FS + S T+
Sbjct: 72 LDKSTFSFWSGLYSETEGTL 91
>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
Length = 482
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 199/331 (60%), Gaps = 53/331 (16%)
Query: 238 GKSLGKAIFLRKALLKINKDNLGFPA----------LLVCNGLPYFWSKSEELGETYFGF 287
G+ + F + L +++K F + +L+ G+PY W S Y GF
Sbjct: 56 GQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGRFC-GYAGF 114
Query: 288 HKN-EIVTSCLFIVLFNIFSTVIGLPISFYHHFVLEEKHGFNKQTYGFFVKDQIKSFIVS 346
EI S +F++L +FS + GLP S Y+ FV+EEKHGFN+QT GF
Sbjct: 115 GPEYEITQSLVFLLLATLFSALAGLPWSLYNTFVIEEKHGFNQQTLGF------------ 162
Query: 347 LILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWV 406
F+KD IK F+V+ + +P++ ++YII++GG+ F+Y W+
Sbjct: 163 --------------------FMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWL 202
Query: 407 FIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLKKLYVVEGSKRSE 466
F +++SL L+TIY ++IAPLFDK+TPLP+G+LK IE ++ S+ FPL K+YVVEGSKRS
Sbjct: 203 FTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSS 262
Query: 467 HSNAYFYGFFKNKRIVLFDTLLKDYVPLNAD---------KKDKAGDSEPLISTEGANKK 517
HSNAYFYGFFKNKRIVLFDTLL++Y LN D + ++ G+SE + + K+
Sbjct: 263 HSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQ 322
Query: 518 GCDTEEVLAVLAHELGHWKYNHVLKSMILKK 548
GC EEVLAVL H LGHWK H +K++I+ +
Sbjct: 323 GCKNEEVLAVLGHALGHWKLGHTVKNIIISQ 353
Score = 218 bits (555), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 104/190 (54%), Positives = 135/190 (71%), Gaps = 9/190 (4%)
Query: 82 SSKRSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNAD---------KKDKSGDSEPLIST 132
SKRS HSNAYFYGFFKNKRIVLFDTLL++Y LN D + ++ G+SE + +
Sbjct: 257 GSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAK 316
Query: 133 EGANKKGCDTEEVLAVLAHELGHWKYNHVLKSMIVMQLNLLFMLYSFQYLFQYPPLYSAF 192
K+GC EEVLAVL H LGHWK H +K++I+ Q+N + F L L++AF
Sbjct: 317 VKNKKQGCKNEEVLAVLGHALGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAF 376
Query: 193 GFYDSQPILLGLIIVLQYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSLGKAIFLRKALL 252
GFYDSQP L+GL+I+ Q++F+PYN+++ F +T ++RRFEFQADAF K LGKA L AL+
Sbjct: 377 GFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALI 436
Query: 253 KINKDNLGFP 262
K+NKDNLGFP
Sbjct: 437 KLNKDNLGFP 446
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 2 EFTLEFQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYS 61
E E +IF ++ FSW V+L+E +L+ RQRR+Y TT VP ++ MD+E+FEKSR Y
Sbjct: 12 EMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQ 71
Query: 62 LDKNVFSMFKETVSNVMNTV 81
LDK+ FS + S T+
Sbjct: 72 LDKSTFSFWSGLYSETEGTL 91
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
Length = 461
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 143/283 (50%), Gaps = 66/283 (23%)
Query: 271 PYFWSKSEELGETYFG--FHK-NEIVTSCLFIVLFNIFSTVIGLPISFYHHFVLEEKHGF 327
P W + L FH + + S F+ L + ST++ LP+S+Y HFVLEEK GF
Sbjct: 94 PKIWHMAVTLSNAVLPVRFHMVSTVAQSLCFLGLLSSMSTLVDLPLSYYSHFVLEEKFGF 153
Query: 328 NKQTYGFFVKDQIKSFIVSLILSIPLTGAVVYI-IQTYGFFVKDQIKSFIVSLILSIPLT 386
NK T ++ D IK SL L+ + G ++Y+ ++ + F D
Sbjct: 154 NKLTVKLWITDMIK----SLTLAYAIGGPILYLFLKIFDKFPTD---------------- 193
Query: 387 GAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPLPDGELKSRIEQLS 446
Y+ VF+ ++ + MTI P FI PLF+K+TPL DGELK IE L+
Sbjct: 194 -------------FLWYIMVFLFVVQILAMTIIPVFIMPLFNKFTPLEDGELKKSIESLA 240
Query: 447 ASVKFPLKKLYVVEGSKRSEHSNAYFYGF-FKNKRIVLFDTLLKDYVPLNADKKDKAGDS 505
V FPL K++V++GSKRS HSNAYF G F +KRIVLFDTL+
Sbjct: 241 DRVGFPLDKIFVIDGSKRSSHSNAYFTGLPFTSKRIVLFDTLV----------------- 283
Query: 506 EPLISTEGANKKGCDTEEVLAVLAHELGHWKYNHVLKSMILKK 548
T+E+ AVLAHE+GHW+ NH++ +I +
Sbjct: 284 -----------NSNSTDEITAVLAHEIGHWQKNHIVNMVIFSQ 315
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 44/193 (22%)
Query: 83 SKRSEHSNAYFYGF-FKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCD 141
SKRS HSNAYF G F +KRIVLFDTL+
Sbjct: 256 SKRSSHSNAYFTGLPFTSKRIVLFDTLV----------------------------NSNS 287
Query: 142 TEEVLAVLAHELGHWKYNHVLKSMIVMQLNLLFMLYSFQYLFQYPPLYSAFGFYDSQ--- 198
T+E+ AVLAHE+GHW+ NH++ +I QL+ + F +++ Y+ FGF+ +
Sbjct: 288 TDEITAVLAHEIGHWQKNHIVNMVIFSQLHTFLIFSLFTSIYRNSSFYNTFGFFVEKSSS 347
Query: 199 -----------PILLGLIIVLQYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSLGKAIFL 247
PI++G ++ + P +QF+M+ ++R E+QADA+ K LG L
Sbjct: 348 GFVDPVITKEFPIIIGFML-FNDLLTPLECAMQFIMSLISRTHEYQADAYAKKLGYKQNL 406
Query: 248 RKALLKINKDNLG 260
+AL+ + NL
Sbjct: 407 CRALIDLQIKNLS 419
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 13 IIGFSWIVFLFEFYLSIRQRRVYHETTIVPHQIAHGMDAESFEKSRRYSLDKNVFSMFKE 72
I FS F FE YL+ RQ + ET + P + +D E+F KSR YS K FS+F +
Sbjct: 19 ISAFSIAQFSFESYLTYRQYQKLSETKL-PPVLEDEIDDETFHKSRNYSRAKAKFSIFSD 77
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 188 LYSAFGFYDSQPILLGLIIVLQYVFAPYNQLVQFLMT-----CMTRRFEFQADAFGKSLG 242
LY+ G++ P++ L + L YV + + + +++ C+T+ + K G
Sbjct: 82 LYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAG 141
Query: 243 KAIFLRKALLKINKDNLGFPALLVCNGLPYFWS-----KSEELGETYFGFHKNEIVTSCL 297
I L I L PA+L FW ++ E GE Y F N VT
Sbjct: 142 MMIAAAWVLSFI----LWAPAIL-------FWQFIVGVRTVEDGECYIQFFSNAAVTFGT 190
Query: 298 FIVLFNIFSTVIGLPISFYH 317
I F + VI + + ++H
Sbjct: 191 AIAAF--YLPVIIMTVLYWH 208
>pdb|3COJ|X Chain X, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|A Chain A, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|B Chain B, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|C Chain C, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|D Chain D, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|E Chain E, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|F Chain F, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|G Chain G, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
Length = 235
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 70 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 129
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 130 E-SQDRKIF 137
>pdb|3PXE|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|B Chain B, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|C Chain C, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|D Chain D, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
Length = 214
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|3PXB|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: T1700a
Length = 214
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERALKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|3PXC|X Chain X, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1699q
Length = 214
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCEQTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|2ING|X Chain X, X-Ray Structure Of The Brca1 Brct Mutant M1775k
Length = 213
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 48 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 107
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 108 E-SQDRKIF 115
>pdb|3PXD|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1835p
Length = 214
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|1JNX|X Chain X, Crystal Structure Of The Brct Repeat Region From The
Breast Cancer Associated Protein, Brca1
pdb|1T15|A Chain A, Crystal Structure Of The Brca1 Brct Domains In Complex
With The Phosphorylated Interacting Region From Bach1
Helicase
pdb|1T29|A Chain A, Crystal Structure Of The Brca1 Brct Repeats Bound To A
Phosphorylated Bach1 Peptide
pdb|1T2V|A Chain A, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|B Chain B, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|C Chain C, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|D Chain D, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|E Chain E, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1Y98|A Chain A, Structure Of The Brct Repeats Of Brca1 Bound To A Ctip
Phosphopeptide
Length = 214
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|3K0H|A Chain A, The Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-terminus
pdb|3K0K|A Chain A, Crystal Structure Of Brca1 Brct In Complex With A Minimal
Recognition Tetrapeptide With A Free Carboxy C-Terminus
Length = 215
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 50 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 109
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 110 E-SQDRKIF 117
>pdb|1N5O|X Chain X, Structural Consequences Of A Cancer-Causing Brca1-Brct
Missense Mutation
Length = 214
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|1T2U|A Chain A, Structural Basis Of Phosphopeptide Recognition By The Brct
Domain Of Brca1: Structure Of Brca1 Missense Variant
V1809f
Length = 214
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|3PXA|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: G1656d
Length = 214
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 49 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 108
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 109 E-SQDRKIF 116
>pdb|3K15|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K16|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 EFTLE--FQIFYGIIGFSWIVFLFEFYLSIRQRRVYHETTI-VPHQIAHGMDAESFEKSR 58
EF E + F GI G W+V F SI++R++ +E V + +G + + +++R
Sbjct: 50 EFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR 109
Query: 59 RYSLDKNVF 67
S D+ +F
Sbjct: 110 E-SQDRKIF 117
>pdb|1XR5|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase 3d
From Human Rhinovirus Serotype 14
Length = 466
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 227 TRRFEFQADAFGKSLGKAIFLRKALLKINKDNLGFPALLVCNGLPYFWSKSEELGETYFG 286
T + +F D +G L +++ L ++K LG L+ + L + +LG Y
Sbjct: 138 TEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRLGKSRLIEASSLNDSVNMRMKLGNLYKA 197
Query: 287 FHKNE-IVTSCLFIVLFNIFSTVI 309
FH+N ++T ++F +VI
Sbjct: 198 FHQNPGVLTGSAVGCDPDVFWSVI 221
>pdb|2Q14|A Chain A, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|B Chain B, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|C Chain C, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|D Chain D, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|E Chain E, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|F Chain F, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|G Chain G, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|H Chain H, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
Length = 410
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 526 AVLAHELGHWKYNHVLKSMILKKEFGVANKEREASVMRYVTKE 568
A+L H++GH ++HVL+ I++ GV+++E + KE
Sbjct: 92 AILLHDIGHGPFSHVLEDTIVQ---GVSHEEISLXLXERXNKE 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,347,266
Number of Sequences: 62578
Number of extensions: 716416
Number of successful extensions: 1797
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 31
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)