RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4798
(623 letters)
>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48.
Length = 223
Score = 99.8 bits (249), Expect = 7e-24
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 35/143 (24%)
Query: 407 FIILMSLFLMTIYPEFIAPLFDK-YTPLPDGELKSRIEQLSASV--KFPLKKLYVVEGSK 463
++L SL L TI +IA L + TPL + L+ +E+L+ S FP ++YVV+
Sbjct: 2 LLLLSSLVLATIGAPYIAQLLNGFPTPLRNARLQRVVERLADSAGAGFPPWEVYVVD--- 58
Query: 464 RSEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKAGDSEPLISTEGANKKGCDTEE 523
S NA+ G KNKR+V+ LL +E
Sbjct: 59 -SPQPNAFALGGGKNKRVVVTTGLL--------LALT--------------------EDE 89
Query: 524 VLAVLAHELGHWKYNHVLKSMIL 546
+ AVL HE+GH K H ++SM
Sbjct: 90 LAAVLGHEIGHIKARHSVESMSQ 112
Score = 97.9 bits (244), Expect = 4e-23
Identities = 46/190 (24%), Positives = 69/190 (36%), Gaps = 58/190 (30%)
Query: 86 SEHSNAYFYGFFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEV 145
S NA+ G KNKR+V+ LL +E+
Sbjct: 59 SPQPNAFALGGGKNKRVVVTTGLL--------LALT--------------------EDEL 90
Query: 146 LAVLAHELGHWKYNHVLKSMIVMQLN--LLFMLYSFQYLFQYPPLYSAFGFYDSQPILLG 203
AVL HE+GH K H ++SM L LL + + ++A GF + I L
Sbjct: 91 AAVLGHEIGHIKARHSVESMSQGLLLNLLLLLGAAALGGRAL--GFNANGFLTALGIFLL 148
Query: 204 LIIVLQYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSLGKAIFL----------RKALLK 253
+++L Y +R+ E++AD G LG L K L K
Sbjct: 149 QLLLLPY----------------SRKQEYEADEAGARLGGDKDLARAGYKPRAAVKFLAK 192
Query: 254 INKDNLGFPA 263
+ +NL +
Sbjct: 193 LAAENLSRVS 202
>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function
[Posttranslational modification, protein turnover,
chaperones].
Length = 302
Score = 73.4 bits (180), Expect = 3e-14
Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 41/166 (24%)
Query: 90 NAYFYG-FFKNKRIVLFDTLLKDYVPLNADKKDKSGDSEPLISTEGANKKGCDTEEVLAV 148
NA+ G KN R+V+ LL + +E+ AV
Sbjct: 129 NAFALGGGPKNGRVVVTTGLLD----------------------------LLNDDELEAV 160
Query: 149 LAHELGHWKYNHVLKSMIVMQLNLLFMLYSFQYLFQYPPLYSAFGFYDSQPILLGLIIVL 208
LAHELGH K H L + + L + A L L+++L
Sbjct: 161 LAHELGHIKNRHTLVRLTLRGLLASAFVL---------LATLALAAGLLGEAALALLLLL 211
Query: 209 QYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSLGKAIFLRKALLKI 254
+ L+ +R+ E++AD F L L AL K+
Sbjct: 212 LLLALFLATLLVLA---FSRKREYEADRFAAKLTGPEKLASALQKL 254
Score = 58.8 bits (142), Expect = 2e-09
Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 50/213 (23%)
Query: 340 IKSFIVSLILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQ--VGG 397
++ F++ LI S L A+ ++ G + ++ ++ + +I +
Sbjct: 11 LRLFLLLLISSFSLNLALTSLLLALGPSL------LLLLGGIAAASALGRLLLIALLLAF 64
Query: 398 NMVFLYLWV--FIILMSLFLMTI-YPEFIAPLFDKYTPLPDGELKSRIEQLSASVKFPLK 454
+ + L ++L SL +T+ P +AP L ++ +L+ P
Sbjct: 65 AALLISLLFSKALVLKSLGALTLSEPILLAPRLYA-------VLLLKVAELARQAGIPHM 117
Query: 455 KLYVVEGSKRSEHSNAYFYG-FFKNKRIVLFDTLLKDYVPLNADKKDKAGDSEPLISTEG 513
+ + + NA+ G KN R+V+ LL
Sbjct: 118 PEVYILETPQP---NAFALGGGPKNGRVVVTTGLLD------------------------ 150
Query: 514 ANKKGCDTEEVLAVLAHELGHWKYNHVLKSMIL 546
+ +E+ AVLAHELGH K H L + L
Sbjct: 151 ----LLNDDELEAVLAHELGHIKNRHTLVRLTL 179
>gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional.
Length = 288
Score = 46.9 bits (112), Expect = 1e-05
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 143 EEVLAVLAHELGHWKYNHVLKSMIVMQLNLLFMLYSFQYLFQYPPLYSAFGFYDSQPI-L 201
+E+ V+AHEL H K L I L M + + + G D
Sbjct: 123 DELEGVIAHELTHIKNRDTLIQTIAATLAGAIMYLA--QWLSWGLWFGGGGRDDRNGGNP 180
Query: 202 LGLIIVLQYVFAPYN-QLVQFLMTCMTRRFEFQADAFGKSL-GKAIFLRKALLKINK 256
+G ++++ + AP L+QF ++R+ EF AD G L G + L AL K+ K
Sbjct: 181 IGSLLLI--ILAPIAATLIQF---AISRQREFSADEGGARLTGNPLALANALQKLEK 232
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional.
Length = 336
Score = 45.9 bits (109), Expect = 4e-05
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 141 DTEEVLAVLAHELGHWKYNHVLKSMIVMQLNLLFMLYSFQYLFQYPPLYSAFGFYDSQ-- 198
D +E+ AV+AHEL H ++ + ++ V L+ + ML +LF YS G +
Sbjct: 169 DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNI-MLIVADFLF-----YSFMGNRRNSGA 222
Query: 199 PILLGLIIVLQYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSLGKAIFLR------KALL 252
+I++L+YV P L LM ++R E+ ADA G +R +AL
Sbjct: 223 NRARMIILILRYVL-PI--LTVLLMLFLSRTREYMADA-----GAVELMRDNEPMARALQ 274
Query: 253 KINKD 257
KI+ D
Sbjct: 275 KISND 279
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 39.2 bits (91), Expect = 0.006
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 546 LKKEFGVANKEREASVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAKLKVLSTD 605
L+ E G A E+ A+ SEL ARQ+REA ++ A + +L L+
Sbjct: 86 LRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQ 145
Query: 606 KARLTQ 611
L
Sbjct: 146 AQDLQT 151
>gnl|CDD|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional.
Length = 296
Score = 36.8 bits (86), Expect = 0.025
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 141 DTEEVLAVLAHELGHWKYNHVLKSMIVMQL-----NLLFMLYSFQYLFQYPPLYSAFGFY 195
D +E+ AVLAHEL H K + + VM + + F++ + + F + G
Sbjct: 129 DPDELEAVLAHELSHVKN----RDVAVMTIASFLSTIAFLIVRWGFYFG---GFGGRGGG 181
Query: 196 DSQPILLGLIIVLQYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSL-GKAIFLRKALLKI 254
+L +I+V V+A + L+ ++R EF AD + G+ L AL+KI
Sbjct: 182 GGGGGILVVILVSLVVWA----ISFLLIRALSRYREFAADRGAAIITGRPSALASALMKI 237
>gnl|CDD|192111 pfam08647, BRE1, BRE1 E3 ubiquitin ligase. BRE1 is an E3 ubiquitin
ligase that has been shown to act as a transcriptional
activator through direct activator interactions.
Length = 96
Score = 34.2 bits (79), Expect = 0.026
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 546 LKKEFGVANKEREASVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAKLKVLST 604
L+K F + V E + + ++ A++KY AM+ KD + A+ K L+T
Sbjct: 8 LEKAFKELSSLALKKVAELTILEQKKLRLTAEKAKADQKYFAAMRSKDALDAENKKLNT 66
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 34.5 bits (80), Expect = 0.10
Identities = 21/137 (15%), Positives = 57/137 (41%), Gaps = 22/137 (16%)
Query: 289 KNEIVTS-CLFIVLFNIFSTVIGLPISFYHHFVLEEKHGFNKQTYGFFVKDQIKSFIVSL 347
+ EIV S LF ++ + +I I+F + + + + ++ L
Sbjct: 75 RKEIVLSKYLFSLILGLIGIIISFLIAFIVSLIFGN----------ITISELLLILLIGL 124
Query: 348 ILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFL----- 402
I+++ + GA++ + ++ K I+ +I+ + + I ++ ++ L
Sbjct: 125 IIAL-IFGAILLPL----YYKFGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLINNSS 179
Query: 403 -YLWVFIILMSLFLMTI 418
L + ++++ + L I
Sbjct: 180 LLLIIILLVIIIILYII 196
Score = 31.5 bits (72), Expect = 0.87
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 374 SFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKYTPL 433
++ ++ I ++ + +I+ + + + + I+L+ L + I+ + PL+ K+
Sbjct: 85 FSLILGLIGIIISFLIAFIVSLIFGNITISELLLILLIGLIIALIFGAILLPLYYKF--- 141
Query: 434 PDGELKSRI 442
G K RI
Sbjct: 142 --GYEKGRI 148
>gnl|CDD|235102 PRK03072, PRK03072, heat shock protein HtpX; Provisional.
Length = 288
Score = 34.6 bits (80), Expect = 0.13
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 141 DTEEVLAVLAHELGHWKYNH-VLKSMIVMQLNLLFMLYSFQYLFQYPPLYSAFGFYDSQ- 198
+ E+ VL HEL H YN +L S + L + YL FG
Sbjct: 123 NERELRGVLGHELSH-VYNRDILISSVAGALASVIT-----YLANMAMFAGMFGGRRDND 176
Query: 199 -PILLGLIIVLQYVFAPYNQLVQFLMTCMTRRFEFQADAFGKSL-GKAIFLRKALLKI 254
P L L++V + P V L +R E+QAD G L G + L AL KI
Sbjct: 177 GPNPLALLLVS--LLGPIAATVIQLAISRSR--EYQADESGAELTGDPLALASALRKI 230
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 34.8 bits (81), Expect = 0.16
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 334 FFVKDQIKSFIVSLILSIPLTGAVVYIIQTYGFFVKDQ---------IKSFIVSLILSIP 384
F D +++ ++ L + G + II T FFV+ + IVS ILSI
Sbjct: 240 LFGADGVQAGVL-FPLLVAAVGIIASIIGT--FFVRTGKGANPMKALNRGLIVSAILSIV 296
Query: 385 LTGAVVYIIQVGGNMVFLYLWVFI-ILMSLFLMTIYPEF 422
T Y + FL+ +F+ +L+ L +
Sbjct: 297 ATYFATYWLLPAAGKGFLWWNLFLAVLIGLVAGALIGLI 335
>gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional.
Length = 317
Score = 34.2 bits (79), Expect = 0.17
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 143 EEVLAVLAHELGHWKYNHVLKSMIVMQL-NLLFMLYSFQYLFQYPPLYSAFGFYDSQPIL 201
EEV V+AHEL H K L I L + ML +F + F G ++
Sbjct: 122 EEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFG--------GNRENNNGP 173
Query: 202 LGLI-IVLQYVFAPYN-QLVQFLMTCMTRRFEFQADAFGKSL-GKAIFLRKALLKI 254
LGL+ + + AP LVQ ++R E+ AD G + G ++L AL KI
Sbjct: 174 LGLVGTLAAMIVAPLAAMLVQM---AISRTREYAADRRGAEICGNPLWLASALGKI 226
>gnl|CDD|227123 COG4784, COG4784, Putative Zn-dependent protease [General function
prediction only].
Length = 479
Score = 34.4 bits (79), Expect = 0.20
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 520 DTEEVLAVLAHELGHWKYNHVLKSMILKKEFGVANK 555
D+ EV AVLAHE+GH NH ++ + +A++
Sbjct: 120 DSSEVAAVLAHEMGHVTANHGIQRQQREAAEVIASR 155
Score = 32.1 bits (73), Expect = 0.91
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 141 DTEEVLAVLAHELGHWKYNH 160
D+ EV AVLAHE+GH NH
Sbjct: 120 DSSEVAAVLAHEMGHVTANH 139
>gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional.
Length = 283
Score = 33.1 bits (76), Expect = 0.33
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 141 DTEEVLAVLAHELGHWKYNHVLKSMIVMQL-NLLFMLYSFQYLFQYPPLYSAFGFYDSQP 199
E+ V+AHEL H K+ +L S I + + L +F F G ++
Sbjct: 120 SEREIRGVMAHELAHVKHRDILISTISATMAGAISALANFAMFFG--------GRDENGR 171
Query: 200 ---ILLGLIIVLQYVFAPY-NQLVQFLMTCMTRRFEFQADAFGKSL-GKAIFLRKALLKI 254
+ G+ + + AP L+Q M ++R EF+AD G + G L AL KI
Sbjct: 172 PVNPIAGIAVAI---LAPLAASLIQ--MA-ISRAREFEADRGGARISGDPQALASALDKI 225
Query: 255 NKDNLGFP 262
++ G P
Sbjct: 226 HRYASGIP 233
Score = 29.2 bits (66), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 520 DTEEVLAVLAHELGHWKYNHVLKSMI 545
E+ V+AHEL H K+ +L S I
Sbjct: 120 SEREIRGVMAHELAHVKHRDILISTI 145
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 32.5 bits (75), Expect = 0.37
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 347 LILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYII----QVGGNMVFL 402
L L + LT AV Y++ + ++ F V L+L + L V + + +
Sbjct: 11 LALGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALA 70
Query: 403 YLWVFIILMSLFLMTIYPEFIAP 425
L++F +L L L I + A
Sbjct: 71 LLFLFTLLEGLTLGPILLVYTAG 93
>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed.
Length = 439
Score = 33.3 bits (77), Expect = 0.39
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 343 FIVSLILSIPLTGAVVYII---QTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQV 395
F + L+ +T ++I Q GF +++ I L+L I A +I+++
Sbjct: 139 FGIPLLQGALITALDTFLILMLQRRGF---RPLEAIIGGLLLVI----AAAFIVEL 187
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 33.1 bits (76), Expect = 0.42
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 141 DTE-EVLAVLAHELGHWKYNHVLKSMIVMQLNLLFML 176
+ E E+ V+AHE+GH H+ +SM Q +
Sbjct: 125 ENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAI 161
Score = 32.8 bits (75), Expect = 0.57
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 520 DTE-EVLAVLAHELGHWKYNHVLKSM 544
+ E E+ V+AHE+GH H+ +SM
Sbjct: 125 ENESELAGVIAHEIGHVAQRHLARSM 150
>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed.
Length = 285
Score = 32.6 bits (75), Expect = 0.59
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 333 GFFVKDQIKSFIVSLILSIPLTGAVVYIIQTYGFFVKDQ--IKSFIVSLILSIPLTGAVV 390
G ++ I +LI IPL ++Y + K K+ +VSL+ ++ V
Sbjct: 94 GAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRL-KRIPLFKNLVVSLLWALSPLILGV 152
Query: 391 YIIQVGGNMVFLYLWVFIILMSL 413
Y Q+ + L VFI L S
Sbjct: 153 YYYQLTIFSLLLLYAVFIFLKSF 175
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 32.4 bits (75), Expect = 0.79
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 345 VSLILSIPLTGAVVYIIQTYGFFVKDQ---------IKSFIVSLILSIPLTGAVVYIIQV 395
V L I G + II FFV+ + IV+ +LSI LT Y +
Sbjct: 236 VLFPLLIAAVGIIASIIGI--FFVRLGKGGNPMKALNRGLIVTAVLSIVLTYFATYWLLG 293
Query: 396 GGNMVFLYLWVFII 409
G F +L +F
Sbjct: 294 DGADGFTWLNLFGA 307
>gnl|CDD|132059 TIGR03014, EpsL, exopolysaccharide biosynthesis operon protein
EpsL. The epsL gene is described as a component of the
methanolan exopolysaccharide biosynthesis operon in
Methylobacillus sp strain 12S , although no other
information regarding its possible function is
suggested. Homologs of this gene are found in several
other exopolysaccharide operons in a small number of
species. These operons contain a subset of the
methanolan operon genes by homology and synteny,
including the epsH gene which is proposed to act as an
"exosortase" directing proteins with a C-terminal tag
(PEP-CTERM) to the exopolysaccharide layer. Each of the
genomes in which these genes and epsL are found also
encode genes with these C-terminal tags.
Length = 381
Score = 32.1 bits (73), Expect = 0.85
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 50 DAESFEKSRRYSLDKNVFSMFKETVSNVMNTVSSKRSEHSNAYFYGFFKNKRI----VLF 105
D SF S Y+ D N+F + S+ T SS RS+ N G NKR
Sbjct: 6 DTLSFTASLTYTYDDNLFR-LDSSESSQALTGSSDRSDQINVTTAGVSVNKRYSRQRFKV 64
Query: 106 DTLLKDYVPLNADKKDKSG 124
D L + N D D G
Sbjct: 65 DARLSKHRYQNYDFLDFDG 83
>gnl|CDD|224866 COG1955, FlaJ, Archaeal flagella assembly protein J [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 527
Score = 31.9 bits (73), Expect = 1.1
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 340 IKSFIVSLILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNM 399
I SL +S TG + II + + + + I+ +ILSI G + ++ G
Sbjct: 439 ISGIFSSLNVSQLGTGEIFSIIPSSSIDLLEIL-LLIILIILSI-ANGLAIKVVDGGSKY 496
Query: 400 VFLYLWVFIILMSLFLMTIYPEFIA 424
LY +V ++ +S M I P +
Sbjct: 497 NSLYYFVLLLWISAISMYIGPPLVK 521
>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 569
Score = 32.0 bits (73), Expect = 1.1
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 24/150 (16%)
Query: 292 IVTSCLFIVL----FNIFSTVIGLPISFYHHFVLEEKHGFNKQTYGFFVKDQIKSFIVSL 347
+ LF++L F +F + LP S + G F + +VS
Sbjct: 249 GGLAALFVLLALSMFGLFE--LQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSP 306
Query: 348 ILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGN--------- 398
+ PL GA++YI Q+ G + + + + L + +PL +I V GN
Sbjct: 307 CTAPPLAGALLYIAQS-GNALLGGLALYALGLGMGLPLL-----LIGVFGNRLLPKPGPW 360
Query: 399 M-VFLYLWVFIIL-MSLFLMTIY-PEFIAP 425
M + F++L +++L+ PE A
Sbjct: 361 MNTVKQAFGFVLLATAIWLLWRVLPEVGAL 390
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional.
Length = 216
Score = 31.2 bits (71), Expect = 1.1
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 408 IILMSLFLMTIYPEFIAPLFDKY----TPLPDGE-LKSRIEQLSASVKFPLKK 455
L S L+ P + P +K T + + ++ +I +L +SVKF LKK
Sbjct: 108 AFLASQSLLPQIPRLLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKK 160
>gnl|CDD|224372 COG1455, CelB, Phosphotransferase system cellobiose-specific
component IIC [Carbohydrate transport and metabolism].
Length = 432
Score = 31.8 bits (73), Expect = 1.3
Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 54/217 (24%)
Query: 230 FEFQADAFGKSLGKAIFLRKALLKINKDNLGFPALLVCNGLPYFWSKSEELGETYFGFHK 289
F F AD GK G L+++ G +LLV G+ Y +KS + G
Sbjct: 53 FLFGADFLGKPFGNGWKG--ILMQVYNGTFGIMSLLVAFGIAYSLAKSYGVDALAAGL-- 108
Query: 290 NEIVTSCLFIVLFNIFSTVIG--LPISFYHHFVLEEKHGFNKQTYGFFVKDQIKSFIVSL 347
+ + FIV + V + ++ G F + I++L
Sbjct: 109 --LSLAAFFIVTPLSIAVVPAGAVGAAWL-------------GGKGLFT-----AIIIAL 148
Query: 348 ILSIPLTGAVVYIIQTYGFFVKDQI-------------KSF--IVSLILSIPLTGAVVYI 392
+ V I Y F VK I KSF ++ + + + G + +
Sbjct: 149 V--------TVEI---YTFLVKRNITIKMPESVPPAVSKSFEALIPGFIILSIFGLINIL 197
Query: 393 IQVGGNMVFLYLWVFIILMSLFLM--TIYPEFIAPLF 427
+ + L I LF + ++ I
Sbjct: 198 LNSITGGNLITLIYTAIQAPLFGLGDSLPGVLIIAFL 234
>gnl|CDD|217638 pfam03611, EIIC-GAT, PTS system sugar-specific permease component.
This family includes bacterial transmembrane proteins
with a putative sugar-specific permease function,
including and analogous to the IIC component of the PTS
system. It has been suggested that this permease may
form part of an L-ascorbate utilisation pathway, with
proposed specificity for 3-keto-L-gulonate (formed by
hydrolysis of L-ascorbate). This family includes the IIC
component of the galactitol specific GAT family PTS
system.
Length = 406
Score = 31.3 bits (72), Expect = 1.5
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 25/104 (24%)
Query: 352 PLTGAVVYIIQTYG------FFVKDQIKSFIVSLIL-------SIPLTGAVVYIIQ--VG 396
P A+ + Q +G + F+V+++L I LTG + +
Sbjct: 78 PAAAAIAALAQNFGSPVALIMIL-----GFLVNILLARFTKFTYIFLTGHIWNFWAFMIA 132
Query: 397 GNMVFLYL--WVFIILMSLFL---MTIYPEFIAPLFDKYTPLPD 435
G +V+ W IIL ++ L M I P AP K T L
Sbjct: 133 GVLVYAGTGNWWLIILGAVILGLYMLILPALTAPFVRKVTGLDG 176
>gnl|CDD|185102 PRK15180, PRK15180, Vi polysaccharide biosynthesis protein TviD;
Provisional.
Length = 831
Score = 31.6 bits (71), Expect = 1.7
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 557 REASVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAKLKVLSTDKARLTQLYDDK 616
+ AS+ + KE + R + +KK + + E +V+ LK + D +RL + Y
Sbjct: 682 QNASMNKLFEKECRNVATRALKYVRQKKTEGRLDEALSVLISLKRIEPDVSRLMREYKQI 741
Query: 617 VRMYN 621
+R++N
Sbjct: 742 IRLFN 746
>gnl|CDD|114751 pfam06047, SynMuv_product, Ras-induced vulval development
antagonist. This family is from synthetic multi-vulval
genes which encode chromatin-associated proteins
involved in transcriptional repression. This protein has
a role in antagonising Ras-induced vulval development.
Length = 105
Score = 29.3 bits (66), Expect = 2.1
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 551 GVANKEREASVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAKLKVL 602
G +K A +R KE+++ +A + R A Y+E K ++ ++++ K L
Sbjct: 53 GSRHKRMNAVRIR---KENQVYSAEEKRALAMFNYEERAKRENKILSQFKEL 101
>gnl|CDD|235098 PRK03007, PRK03007, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 428
Score = 30.7 bits (70), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 139 GCDTEEV-LAVLAHELGHWKYNH 160
GCD + V LA LAH++GH Y H
Sbjct: 90 GCDPDLVDLAGLAHDIGHPPYGH 112
Score = 30.7 bits (70), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 518 GCDTEEV-LAVLAHELGHWKYNH 539
GCD + V LA LAH++GH Y H
Sbjct: 90 GCDPDLVDLAGLAHDIGHPPYGH 112
>gnl|CDD|222391 pfam13803, DUF4184, Domain of unknown function (DUF4184). This
domain of unknown function contains several highly
conserved histidines.
Length = 246
Score = 30.3 bits (69), Expect = 2.5
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 304 IFSTVIGLPISFYHHFVLEEKHGFNKQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQT 363
S+++GL + + + + V +IK F +++ + L G ++Y +
Sbjct: 158 HGSSLLGLLLLAW--MIW---RYLRRHPQKPQVPAKIKLFYWIVVILLGLLGFLLYALYF 212
Query: 364 YGFFVKDQIKSF---IVSLILSIPLTGAVVYII 393
+ F IV+ I + + +V I+
Sbjct: 213 PLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 30.4 bits (68), Expect = 2.7
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 548 KEFGVANKEREASVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAKLKV 601
K FG+ NK R V + + I +E EKK K M+EK K +
Sbjct: 28 KTFGLKNKNRSTKVQAIIKQ----IETLNLKEQLEKKEKMRMEEKRREPEKQVI 77
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Flap endonuclease-1 (FEN1) is
involved in multiple DNA metabolic pathways, including
DNA replication processes (5' flap DNA endonuclease
activity and double stranded DNA 5'-exonuclease
activity) and DNA repair processes (long-patch base
excision repair) in eukaryotes and archaea. Interaction
between FEN1 and PCNA (Proliferating cell nuclear
antigen) is an essential prerequisite to FEN1's DNA
replication functionality and stimulates FEN1 nuclease
activity by 10-50 fold. FEN1 belongs to the
FEN1-EXO1-like family of structure-specific, 5'
nucleases. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain) of variable length (approximately 45 residues in
FEN1 PIN domains) and a H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region.
Both the H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. Nucleases
within this group also have a carboxylate-rich active
site that is involved in binding essential divalent
metal ion cofactors (Mg2+/Mn2+). FEN1 has a C-terminal
extension containing residues forming the consensus
PIP-box - Qxx(M/L/I)xxF(Y/F) which serves to anchor FEN1
to PCNA.
Length = 261
Score = 30.2 bits (69), Expect = 2.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 567 KESELITARQDREAAEKKYKEAMKEKDNVMAK 598
K EL R+ RE AE+K +EA +E D A+
Sbjct: 88 KSGELEKRRERREEAEEKLEEAKEEGDAEEAR 119
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.9 bits (69), Expect = 3.0
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 498 KKDKAGDSEPLISTEGANKKGCDTEEVLAVLAHELGHWKYNHVLKSMILKKEFGVANKER 557
K D+A +E + A KK EE A A E K+ KK+ A K
Sbjct: 1291 KADEAKKAEEKKKADEAKKKA---EE--AKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
Query: 558 EASVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAK 598
EA+ E A + EAAEKK +EA K+ D K
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
>gnl|CDD|224509 COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large
permease component [Carbohydrate transport and
metabolism].
Length = 379
Score = 30.2 bits (69), Expect = 3.1
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 376 IVSLILSI----PLTGAVVYIIQVGGNMVFLYL------WVFIILMSLFLMTIYPEFIAP 425
+ L LSI P G V+++ G + + ++ +++ L L+T +PE
Sbjct: 314 VFVLNLSIGLITPPVGMVLFVASAVGKVPIEAVIKAILPFLVALILVLLLITYFPELSLW 373
Query: 426 L 426
L
Sbjct: 374 L 374
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 30.5 bits (69), Expect = 3.5
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 546 LKKEFGVANKE-REASVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAKLKVLST 604
KE E RE + + + K EA +E N+ +L+ L
Sbjct: 155 ALKELKELEAEIREVQL------------KTRTWKDLVKALDEAEEELANLRKELRQLEK 202
Query: 605 DKARLTQL 612
+K RL +L
Sbjct: 203 EKQRLERL 210
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 30.1 bits (68), Expect = 3.6
Identities = 13/78 (16%), Positives = 36/78 (46%)
Query: 342 SFIVSLILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVF 401
+ +V LI+ + +++ ++ +GF S ++ + S L G V+ I + + +F
Sbjct: 113 ALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLLSISLLISSLF 172
Query: 402 LYLWVFIILMSLFLMTIY 419
+ +++ + L+
Sbjct: 173 SSSSLALLVSIILLLLFI 190
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 30.1 bits (68), Expect = 3.7
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 252 LKINKDNLGFPALLVCNGLPYFWSKSEEL 280
L +N D L FPA+ +CN PY +SK + L
Sbjct: 65 LSVNSDKLTFPAVTLCNLNPYRYSKVKHL 93
>gnl|CDD|223911 COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].
Length = 1009
Score = 30.3 bits (69), Expect = 4.3
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 335 FVKDQIKSFIVSLILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYIIQ 394
F+K I+ I +L +I L V+Y+ F+ + + I + L++P++
Sbjct: 323 FIKASIEEVIKTLFEAIVLVVLVMYL------FLGNLRATLIPA--LAVPVS-------- 366
Query: 395 VGGNMVFLYLWVFII-LMSLFLMTI 418
+ G +Y + F + ++LF + +
Sbjct: 367 LLGTFAVMYAFGFSLNTLTLFALVL 391
>gnl|CDD|204637 pfam11391, DUF2798, Protein of unknown function (DUF2798). This
family of proteins has no known function.
Length = 60
Score = 27.1 bits (61), Expect = 4.6
Identities = 10/55 (18%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 343 FIVSLILSIPLTGAVVYIIQTYGF---FVKDQIKSFIVSLILSIPLTGAVVYIIQ 394
++SL++S+ ++G + + GF F+ +K+++++ ++ P+ V +++
Sbjct: 1 LLMSLLMSLIMSGVITLL--NLGFGDGFLSRWLKAWLLAWPVAFPIVLLVAPLVR 53
>gnl|CDD|189014 cd09607, M3B_PepF_2, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 581
Score = 29.8 bits (68), Expect = 5.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 146 LAVLAHELGHWKYNHVLKSM 165
++ LAHELGH +N VL+ +
Sbjct: 372 VSTLAHELGHAYHNWVLRDL 391
Score = 29.8 bits (68), Expect = 5.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 525 LAVLAHELGHWKYNHVLKSM 544
++ LAHELGH +N VL+ +
Sbjct: 372 VSTLAHELGHAYHNWVLRDL 391
>gnl|CDD|214819 smart00793, AgrB, Accessory gene regulator B. The accessory gene
regulator (agr) of Staphylococcus aureus is the central
regulatory system that controls the gene expression for
a large set of virulence factors. The arg locus consists
of two transcripts: RNAII and RNAIII. RNAII encodes four
genes (agrA, B, C, and D) whose gene products assemble a
quorum sensing system. At low cell density, the agr
genes are continuously expressed at basal levels. A
signal molecule, autoinducing peptide (AIP), produced
and secreted by the bacteria, accumulates outside of the
cells. When the cell density increases and the AIP
concentration reaches a threshold, it activates the agr
response, i.e. activation of secreted protein gene
expression and subsequent repression of cell
wall-associated protein genes. AgrB and AgrD are
essential for the production of the autoinducing peptide
which functions as a signal for quorum sensing. AgrB is
a transmembrane protein. AgrB is involved in the
proteolytic processing of AgrD and may have both
proteolytic enzyme activity and a transporter
facilitating the export of the processed AgrD peptide.
Length = 184
Score = 28.8 bits (65), Expect = 5.5
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 373 KSFIVSLILSIPLTGAVVYIIQVGGNMVF-LYLWVFIILMSLFLMTIYPEFIAPLFDKYT 431
KS ++ +LSI + + ++I+ + L + + L+ L L+ IY AP +
Sbjct: 74 KSSLLCTLLSIIIFVGIPFLIK---FLDLNLPFILGLFLIGLVLIYIY----APADTEKQ 126
Query: 432 PLPDGELKSRIEQLS 446
P+ +LK ++++ S
Sbjct: 127 PVIPEKLKKKLKKKS 141
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 29.4 bits (67), Expect = 5.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 567 KESELITARQDREAAEKKYKEAMKEKD 593
K E+ R+ RE AE+KY+EA +E D
Sbjct: 40 KAEEIEERREVREEAEEKYEEAKEEGD 66
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
Length = 473
Score = 29.7 bits (67), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 7 FQIFYGIIGFSWIVFLFE-FYLSIRQRR 33
FQIFYG++G SW +L Y+ R R+
Sbjct: 82 FQIFYGLLG-SWTAYLISVLYVEYRARK 108
>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional.
Length = 591
Score = 29.4 bits (66), Expect = 7.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 364 YGFFVKDQIKSFIVSLILSIPLTGAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFI 423
YGF + ++ LI+ +PL GA+V +++G N + I+L +F +P
Sbjct: 247 YGFVI-------LIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFP--- 296
Query: 424 APLFDKYTPLPDGELKS 440
FD P D + K+
Sbjct: 297 LTTFDGKRPHDDSDGKA 313
>gnl|CDD|191366 pfam05757, PsbQ, Oxygen evolving enhancer protein 3 (PsbQ). This
family consists of the plant specific oxygen evolving
enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a
pigment-protein complex, which consists of at least 25
different protein subunits, at present denoted PsbA-Z
according to the genes that encode them. PsbQ plays an
important role in the lumenal oxygen-evolving activity
of PSII from higher plants and green algae.
Length = 203
Score = 28.6 bits (64), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 577 DREAAEKKYKEAMKEKDNVMAKL 599
D AEK Y++ D V+AKL
Sbjct: 180 DVYEAEKYYEKTKSSLDEVLAKL 202
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 29.1 bits (66), Expect = 7.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 567 KESELITARQDREAAEKKYKEAMKEKD 593
K L R+ RE AE+K++EA+++ D
Sbjct: 87 KAETLEERREIREEAEEKWEEALEKGD 113
>gnl|CDD|224537 COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit
2 [Energy production and conversion].
Length = 247
Score = 28.9 bits (65), Expect = 7.7
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 340 IKSFIVSLILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILSIPLTGAVVYII 393
I S ++ L++ +P+ +VY Y + + L I T + I+
Sbjct: 35 ILSTLLMLVIVLPVIVLLVYFAWKYRASNNAAPPQWHHNTKLEIVWTVIPILIV 88
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix metalloproteinases
(MMPs), serralysins, and the astacin_like family of
proteases.
Length = 165
Score = 28.2 bits (63), Expect = 7.9
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 522 EEVLAVLAHELGH---WKYNHVLKSMILKKEFGVANKEREASVMRY 564
+ HELGH ++N +A K +SVM Y
Sbjct: 92 ARLRNTAEHELGHALGLRHNFAASDRD-DNVDLLAEKGDTSSVMDY 136
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 29.1 bits (65), Expect = 8.1
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 536 KYNHVLKSMILKKEFGVANKEREASVM--RYVTKESELITARQD-----REAAEKKYKEA 588
N VL +I+K++ N E + S+M V + RQD R A+ +
Sbjct: 338 NMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSNG 397
Query: 589 MKEKDNVMAKLKVLSTDKARLTQLYD 614
K +++ + D+ L + D
Sbjct: 398 KSLKSSLIEAGILKYIDEKTLDRAMD 423
>gnl|CDD|148764 pfam07343, DUF1475, Protein of unknown function (DUF1475). This
family consists of several hypothetical plant proteins
of around 250 residues in length. Members of this family
seem to be found exclusively in Arabidopsis thaliana.
The function of this family is unknown.
Length = 254
Score = 28.8 bits (64), Expect = 8.2
Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 293 VTSCLFIVLFNIFSTVIGLPISFYHHFVLEEKHGFNKQTYGFFVKDQIK---------SF 343
+ S + +L F ++ F F ++ + F++D IK SF
Sbjct: 73 IGSFFWTILLICFGSIATCAYLFLKLFEIKNQEASEDPLDLLFLRDSIKDGDGLEDKNSF 132
Query: 344 IVSL-----ILSIPLTGAVVYIIQTYGF-FVKDQIKSFIVSLILSIPLTGAV--VYIIQV 395
++ L + A++Y T G F KD + ++ +L++ + A V++
Sbjct: 133 VIIARFIFGALGAMMAAALIYTCFTDGLPFHKDLLTPWMAALLIDFYIDVAAISVWVAHK 192
Query: 396 GGNMVFLYLWVFIIL 410
N++ +W+ +++
Sbjct: 193 ESNLIIGAIWIALLI 207
>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease. This super-family of
metalloproteases contains two major branches, the
astacin-like proteases and the
adamalysin/reprolysin-like proteases. Both branches have
wide phylogenetic distribution, and contain
sub-families, which are involved in vertebrate
development and disease.
Length = 167
Score = 28.3 bits (63), Expect = 8.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 138 KGCDTEEVLAVLAHELGHW 156
T+E +AHELGH
Sbjct: 89 NQSGTKEGAQTIAHELGHA 107
Score = 28.3 bits (63), Expect = 8.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 517 KGCDTEEVLAVLAHELGHW 535
T+E +AHELGH
Sbjct: 89 NQSGTKEGAQTIAHELGHA 107
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional.
Length = 284
Score = 28.6 bits (65), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 141 DTEEVLAVLAHELGH 155
+EV AVLAHE+ H
Sbjct: 130 SRDEVEAVLAHEISH 144
Score = 28.6 bits (65), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 520 DTEEVLAVLAHELGH 534
+EV AVLAHE+ H
Sbjct: 130 SRDEVEAVLAHEISH 144
>gnl|CDD|224194 COG1275, TehA, Tellurite resistance protein and related permeases
[Inorganic ion transport and metabolism].
Length = 329
Score = 28.8 bits (65), Expect = 9.0
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 343 FIVSLILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSLILS-IPLTGAVVYIIQVG-GNMV 400
F +L + L + + Y V + +VS + P+ ++ + G +
Sbjct: 45 FYFALAIFFLLLIVWILKLIKYPNTVIADLNHPVVSSFVPTFPIATMLLSSYLLYPGLPL 104
Query: 401 FLY-LWVFIILMSLFLMTIYP 420
Y LW F + + LF +
Sbjct: 105 LAYVLWWFGVALQLFFSAWFI 125
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 28.7 bits (65), Expect = 9.2
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 555 KEREASVMRYVT-----KESELITARQDREAAEKKYKEAMKEKDNVMAKLKVLST-DKAR 608
KERE + +R + EL R D E + KE KEK+ + + +AR
Sbjct: 180 KEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAR 239
Query: 609 LTQLYDDKVRM 619
Q+ + + R+
Sbjct: 240 EEQIEEKEERL 250
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal
structure and biogenesis].
Length = 234
Score = 28.4 bits (64), Expect = 9.5
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 515 NKKGCDTEEVLAVLAHELGHWKYNHVLKSMI-----LKKEFGVANKEREASVMRYVTKES 569
K D EEVLA + K LKK FG + + + + K+
Sbjct: 33 EGKEVDLEEVLAT------ETVFKDASKGEKASEEDLKKAFGTTDPDE---IAEEILKKG 83
Query: 570 EL-ITARQDREAAEKKYKE 587
E+ +TA Q RE E+K ++
Sbjct: 84 EIQLTAEQRREMLEEKKRQ 102
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 28.7 bits (65), Expect = 9.9
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 332 YGFFVKDQIKSFIVSLILSIPLTGAVVYIIQTYGFFVKDQIKSFIVSL-----ILSIPLT 386
G I + + L++ T V+ I+ G +K + I+ I +I L
Sbjct: 110 LGILGLSLIAALFLGAALALSSTAIVLKILMELG-LLKTREGQLILGALVFDDIAAILL- 167
Query: 387 GAVVYIIQVGGNMVFLYLWVFIILMSLFLMTIYPEFIAPLFDKY 430
A+V + GG + + ++L L + + L
Sbjct: 168 LAIVPAL-AGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPL 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.411
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,160,911
Number of extensions: 3278717
Number of successful extensions: 5805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5688
Number of HSP's successfully gapped: 261
Length of query: 623
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 520
Effective length of database: 6,369,140
Effective search space: 3311952800
Effective search space used: 3311952800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)