RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4798
         (623 letters)



>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux
           transporter AcrB transmembrane domain {Escherichia coli
           [TaxId: 562]}
          Length = 222

 Score = 27.8 bits (61), Expect = 3.9
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 364 YGFFVKDQIKSFIVSLILSIPLTGAVVYI--------IQVGGNMVFLYLWVFIILMSLFL 415
           Y   V   ++S    L+L + +   + Y+        +   GN       + +I++ L L
Sbjct: 15  YTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDSGNQAPSLYAISLIVVFLCL 74

Query: 416 MTIYPEFIAPL 426
             +Y  +  P 
Sbjct: 75  AALYESWSIPF 85


>d2gy9t1 a.7.6.1 (T:4-86) Ribosomal protein S20 {Escherichia coli
           [TaxId: 562]}
          Length = 83

 Score = 25.7 bits (57), Expect = 5.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 560 SVMRYVTKESELITARQDREAAEKKYKEAMKEKDNVMAKLKVL-----STDKARLTQ 611
           S+MR   K+        D+ AA+K + E     D   A   ++     +  KA LT 
Sbjct: 22  SMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR-QAAKGLIHKNKAARHKANLTA 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,280,770
Number of extensions: 108953
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 11
Length of query: 623
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 532
Effective length of database: 1,158,166
Effective search space: 616144312
Effective search space used: 616144312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.8 bits)