BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy480
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 145 RFPQFILFLQS-RQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQL 203
+ +++ F ++ R M +S G ++ PVQ+ ++ L L +LL +T H D ++
Sbjct: 228 KLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEA 287
Query: 204 ALTQLESLAELLNERKREAE 223
AL ++++A+L+NERKR E
Sbjct: 288 ALHAMKNVAQLINERKRRLE 307
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 146 FPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLAL 205
F +F+ L S LS F ++KP+QR ++ L ++ +L +T H D SL+LAL
Sbjct: 143 FKEFLKKLASDPRCKGMPLSSF--LLKPMQRITRYPLLIRSILENTPESHADHSSLKLAL 200
Query: 206 TQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLAD 246
+ E L +NE RE E + D L+ I + LA+
Sbjct: 201 ERAEELCSQVNEGVREKENS----DRLEWIQAHVQCEGLAE 237
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 146 FPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLAL 205
F +F+ L S LS F ++KP+QR ++ L ++ +L +T H D SL+LAL
Sbjct: 214 FKEFLKKLASDPRCKGMPLSSF--LLKPMQRITRYPLLIRSILENTPESHADHSSLKLAL 271
Query: 206 TQLESLAELLNERKREAEQT 225
+ E L +NE RE E +
Sbjct: 272 ERAEELCSQVNEGVREKENS 291
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 164 LSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAE 223
+S G ++ PVQ+ ++ L L +LL +T H D ++ AL +++A+L+NERKR E
Sbjct: 285 ISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAXKNVAQLINERKRRLE 344
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQT 225
++KP+QR ++ L ++++L +T HPD L+ AL + E L +NE RE E +
Sbjct: 220 ILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENS 275
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 154 QSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAE 213
+ Q ++ R + L++ P+QR ++ L LQ+L+ HT ++ +L+LAL + LA+
Sbjct: 313 ECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEAM-EKENLRLALDAMRDLAQ 371
Query: 214 LLNERKREAEQTQAFKDILKSISG 237
+NE KR+ E + + SI
Sbjct: 372 CVNEVKRDNETLRQITNFQLSIEN 395
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 146 FPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLAL 205
F +F+ L+ LS F ++KP+QR ++ L ++++L +T HPD L+ AL
Sbjct: 125 FKEFVKRLEMDPRCKGMPLSSF--ILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHAL 182
Query: 206 TQLESLAELLNERKREAEQT 225
+ E L +NE RE E +
Sbjct: 183 EKAEELCSQVNEGVREKENS 202
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQT 225
++KP+QR ++ L ++++L +T HPD L+ AL + E L +NE RE E +
Sbjct: 147 ILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENS 202
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 157 QNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLN 216
Q ++ R + L++ P+QR ++ L LQ+L+ HT ++ +L+LAL + LA+ +N
Sbjct: 144 QRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDA-TEKENLRLALDAMRDLAQCVN 202
Query: 217 ERKREAEQTQAFKDILKSI 235
E KR+ E + + SI
Sbjct: 203 EVKRDNETLRQITNFQLSI 221
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 157 QNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLN 216
Q ++ R + L++ P+QR ++ L LQ+L+ HT ++ +L+LAL + LA+ +N
Sbjct: 125 QRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEA-MEKENLRLALDAMRDLAQCVN 183
Query: 217 ERKREAEQTQAFKDILKSISG 237
E KR+ E + + SI
Sbjct: 184 EVKRDNETLRQITNFQLSIEN 204
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 145 RFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLA 204
R+ F F R M ++ G ++ PVQ+ ++ L L +LL +T H D + A
Sbjct: 154 RYQHF--FEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAA 211
Query: 205 LTQLESLAELLNERKREAE 223
L + ++ + +NERKR E
Sbjct: 212 LAVMRNVTQQINERKRRLE 230
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 157 QNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLN 216
Q ++ R + L++ P+QR ++ L LQ+L+ HT ++ +L+LAL + LA+ +N
Sbjct: 146 QRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDA-TEKENLRLALDAMRDLAQCVN 204
Query: 217 ERKR 220
E KR
Sbjct: 205 EVKR 208
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 139 MVKPVQRFP-QFILFLQ-SRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHP 196
++K QR +F LF+Q + + RL L++ +QR ++ L L+ ++ HT G
Sbjct: 134 LIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTS 193
Query: 197 DRMSLQLALTQLESLAELLNERKREAE---QTQAFKDILKSISGKLSTRPLA 245
+ L A Q + + +NE ++ E + + ++ L + + + ++ PLA
Sbjct: 194 EHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLA 245
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 139 MVKPVQRFP-QFILFLQ-SRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHP 196
++K QR +F LF+Q + + RL L++ +QR ++ L L+ ++ HT G
Sbjct: 129 LIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTS 188
Query: 197 DRMSLQLALTQLESLAELLNERKREAE---QTQAFKDILKSISGKLSTRPLA 245
+ L A Q + + +NE ++ E + + ++ L + + + ++ PLA
Sbjct: 189 EHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLA 240
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 139 MVKPVQRFP-QFILFLQ-SRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHP 196
++K QR +F LF+Q + + RL L++ +QR ++ L L+ ++ HT G
Sbjct: 171 LIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTS 230
Query: 197 DRMSLQLALTQLESLAELLNERKREAE---QTQAFKDILKSISGKLSTRPLA 245
+ L A Q + + +NE ++ E + + ++ L + + + ++ PLA
Sbjct: 231 EHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLA 282
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 147 PQFILFLQSRQNSSMDR-LSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLAL 205
P+ FLQ S R L + + P R ++ L L+++L HT HPD L+ A+
Sbjct: 142 PRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAI 201
Query: 206 TQLESLAELLNERKREAEQTQAFKDILKSI 235
++ + +N +K E+E Q + D L+ +
Sbjct: 202 LIIQGVLSDINLKKGESE-CQYYIDKLEYL 230
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 152 FLQSRQNSSMDR-LSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLES 210
FLQ S R L + + P R ++ L L+++L HT + +PD+ L+ A+ ++
Sbjct: 134 FLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQG 193
Query: 211 LAELLNERKREAE 223
+ +N + E+E
Sbjct: 194 IVAEINTKTGESE 206
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 152 FLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGH--GHPDRMSLQLALTQLE 209
F Q Q +LS ++KPVQR ++ L L+++L ++ H G D LQ AL+ +
Sbjct: 126 FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAED---LQEALSSIL 182
Query: 210 SLAELLNE 217
+ + +N+
Sbjct: 183 GILKAVND 190
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 152 FLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGH--GHPDRMSLQLALTQLE 209
F Q Q +LS ++KPVQR ++ L L+++L ++ H G D LQ AL+ +
Sbjct: 126 FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAED---LQEALSSIL 182
Query: 210 SLAELLNE 217
+ + +N+
Sbjct: 183 GILKAVND 190
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 152 FLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGH--GHPDRMSLQLALTQLE 209
F Q Q +LS ++KPVQR ++ L L+++L ++ H G D LQ AL+ +
Sbjct: 126 FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAED---LQEALSSIL 182
Query: 210 SLAELLNE 217
+ + +N+
Sbjct: 183 GILKAVND 190
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 152 FLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGH--GHPDRMSLQLALTQLE 209
F Q Q +LS ++KPVQR ++ L L++ L ++ H G D LQ AL+ +
Sbjct: 126 FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEXLKYSKHCEGAED---LQEALSSIL 182
Query: 210 SLAELLNE 217
+ + +N+
Sbjct: 183 GILKAVND 190
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLAL 205
RL L++KPVQR ++ L L+D L + D L+ A+
Sbjct: 133 RLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAV 175
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 152 FLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESL 211
F++++ SS L + KP R ++ L++L H H DR +Q ++ ++L
Sbjct: 127 FMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNL 186
Query: 212 AELLNE-RKREAEQTQAFKDILK 233
+ E RKR+ + Q + ++
Sbjct: 187 SAQCQEVRKRKELELQILTEAIR 209
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 149 FILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQL 208
F FL ++ + ++KP+QR ++ L L++L T + L +A+
Sbjct: 136 FKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTX 195
Query: 209 ESLAELLNERKREAEQTQAFKDIL 232
+A +NE ++ E+ A D L
Sbjct: 196 NKVASHINEXQKIHEEFGAVFDQL 219
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 28/97 (28%)
Query: 59 SFSKSIVLEIYSEP--------------WPIGTGIIRLVMCFKSI-------------VL 91
+F++S++ EIY E WP+ TG +V+C+K+ V
Sbjct: 50 AFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVS 109
Query: 92 EIYSEFINNFSAAMD-VARGESKKKPALAEFFKSRQN 127
+ + I N + A D + E + P +EFF R+
Sbjct: 110 WVQKDQIPNLNLAYDMLPLMEMMEAPDKSEFFYPRRT 146
>pdb|3CSY|I Chain I, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|K Chain K, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|M Chain M, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|O Chain O, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
Length = 334
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 243 PLADVHRVLLRQDDVTQLVSALVARSSGKLEGAGLNFSGD 282
PL +H +L+ DV +LV S+ +L GLN G+
Sbjct: 19 PLGVIHNSVLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGN 58
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFK 229
+++ VQR Q+ + L D LN+ + + Q AL+ + + + N+ + E Q
Sbjct: 166 LLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSXEQGENLQKLV 225
Query: 230 DILKSISGK 238
I S+ G+
Sbjct: 226 HIEHSVRGQ 234
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 27.7 bits (60), Expect = 7.8, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 231 ILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVARSSG 270
I +I+ K+S P AD+ +++R D ++ V A + + +G
Sbjct: 6 IFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAG 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,363,980
Number of Sequences: 62578
Number of extensions: 268395
Number of successful extensions: 675
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 39
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)