Query psy480
Match_columns 283
No_of_seqs 134 out of 1591
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:04:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4424|consensus 100.0 2.6E-31 5.7E-36 253.8 16.8 151 90-273 144-301 (623)
2 KOG3523|consensus 99.9 2.1E-26 4.5E-31 221.1 14.8 201 6-264 287-488 (695)
3 smart00325 RhoGEF Guanine nucl 99.9 1.3E-24 2.8E-29 184.5 14.1 147 11-217 33-180 (180)
4 KOG3520|consensus 99.9 6.7E-25 1.4E-29 224.4 14.4 201 14-267 428-637 (1167)
5 cd00160 RhoGEF Guanine nucleot 99.9 8.3E-24 1.8E-28 179.8 14.6 144 12-216 37-181 (181)
6 KOG4305|consensus 99.9 9.6E-23 2.1E-27 207.9 15.0 187 17-262 380-570 (1029)
7 PF00621 RhoGEF: RhoGEF domain 99.9 3.4E-22 7.3E-27 168.5 15.0 149 10-217 32-180 (180)
8 KOG3522|consensus 99.8 3.2E-20 7E-25 184.1 11.5 189 15-282 43-243 (925)
9 KOG2996|consensus 99.8 2.3E-18 5.1E-23 165.1 14.2 173 29-264 247-419 (865)
10 KOG3518|consensus 99.7 3.2E-17 7E-22 149.0 15.2 184 19-240 124-326 (521)
11 KOG3521|consensus 99.7 1.4E-15 3E-20 148.0 14.7 128 75-238 262-389 (846)
12 COG5422 ROM1 RhoGEF, Guanine n 99.6 1.7E-16 3.6E-21 158.0 7.1 189 14-261 526-716 (1175)
13 KOG3524|consensus 99.6 3.6E-15 7.8E-20 145.9 7.1 155 89-277 464-627 (850)
14 KOG3519|consensus 99.5 1.7E-14 3.7E-19 147.7 9.8 188 14-262 375-572 (756)
15 KOG3531|consensus 99.4 9E-14 1.9E-18 138.3 3.4 182 29-275 585-779 (1036)
16 KOG2070|consensus 99.4 5.2E-12 1.1E-16 119.9 12.4 160 15-238 140-299 (661)
17 KOG0689|consensus 98.9 5.2E-10 1.1E-14 107.4 4.4 129 22-219 113-241 (448)
18 KOG4240|consensus 98.8 1.1E-08 2.5E-13 105.4 7.3 126 26-221 686-811 (1025)
19 KOG4269|consensus 98.2 1.4E-06 3.1E-11 88.3 5.1 191 18-279 381-588 (1112)
20 KOG3524|consensus 94.0 0.097 2.1E-06 53.0 5.6 156 16-231 429-584 (850)
21 KOG0931|consensus 91.4 0.51 1.1E-05 45.9 6.4 103 168-281 341-458 (627)
22 cd01218 PH_phafin2 Phafin2 Pl 90.5 0.2 4.3E-06 39.2 2.3 33 248-280 1-38 (104)
23 cd01228 PH_BCR-related BCR (br 89.9 0.14 3E-06 39.3 0.9 30 249-278 1-35 (96)
24 KOG3522|consensus 83.6 5.2 0.00011 41.8 8.3 67 16-109 54-120 (925)
25 cd01220 PH_CDEP Chondrocyte-de 76.2 1.9 4E-05 33.3 1.9 30 250-279 1-35 (99)
26 KOG2099|consensus 57.5 2.2E+02 0.0047 29.3 12.3 56 162-217 557-634 (843)
27 cd01219 PH_FGD FGD (faciogenit 49.3 8.4 0.00018 29.5 1.0 28 250-277 1-35 (101)
28 COG1391 GlnE Glutamine synthet 32.5 4.6E+02 0.01 28.4 10.7 13 177-189 583-595 (963)
29 cd01226 PH_exo84 Exocyst compl 31.9 31 0.00066 26.8 1.7 32 250-281 1-40 (100)
30 PF12210 Hrs_helical: Hepatocy 28.2 2E+02 0.0044 22.1 5.5 51 173-223 37-87 (96)
31 PRK12334 nucleoside triphospha 26.2 94 0.002 28.6 4.1 79 12-95 79-160 (277)
32 PF09779 Ima1_N: Ima1 N-termin 24.2 1.6E+02 0.0035 23.7 4.7 30 181-210 84-114 (131)
33 PF06971 Put_DNA-bind_N: Putat 21.6 66 0.0014 21.6 1.6 18 173-190 7-24 (50)
No 1
>KOG4424|consensus
Probab=99.97 E-value=2.6e-31 Score=253.84 Aligned_cols=151 Identities=21% Similarity=0.352 Sum_probs=141.4
Q ss_pred HHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhh
Q psy480 90 VLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGL 169 (283)
Q Consensus 90 ~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (283)
|+++|++|+.||++|+.++..+.++++.|++++.++++++ .|+++.|+++
T Consensus 144 FLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~------------------------------~cg~l~Lqhh 193 (623)
T KOG4424|consen 144 FLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQP------------------------------ECGGLKLQHH 193 (623)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhch------------------------------hcCCccchhh
Confidence 6799999999999999999999999999999999998764 7899999999
Q ss_pred hhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCc
Q psy480 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHR 249 (283)
Q Consensus 170 Li~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R 249 (283)
|+.||||||||.|||+++++++|++.||+.+++.|++.|...+.++|.+++++|+.++|++++.++.+- +++++|+|
T Consensus 194 MiePVQRIPRYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~e---~dIV~Psr 270 (623)
T KOG4424|consen 194 MIEPVQRVPRYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGNE---EDIVSPSR 270 (623)
T ss_pred eechhhhhhHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---ccccCcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 67999999
Q ss_pred eEEEecceeeccccccC---C----ccccee
Q psy480 250 VLLRQDDVTQLVSALVA---R----SSGKLE 273 (283)
Q Consensus 250 ~LI~eG~l~~~~~~~~~---r----~~~~l~ 273 (283)
+||+||.+.+++..... | |||+++
T Consensus 271 eLiKEG~l~Kis~k~~~~qeRylfLFNd~~l 301 (623)
T KOG4424|consen 271 ELIKEGQLQKISAKNGTTQERYLFLFNDILL 301 (623)
T ss_pred HHhhccceeeeeccCCCcceeEEEEehhHHH
Confidence 99999999999876432 3 777654
No 2
>KOG3523|consensus
Probab=99.94 E-value=2.1e-26 Score=221.11 Aligned_cols=201 Identities=20% Similarity=0.260 Sum_probs=182.4
Q ss_pred ccccCCChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHH
Q psy480 6 STSSATSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMC 85 (283)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (283)
.--++|-...|.|.||-+|.+++ +.+.+|+..|+.|+++.--...|+||..+|+.+
T Consensus 287 ~~l~~~Ls~~d~~~LFSni~~V~-~~Serfl~dLE~r~e~ni~i~dicDiv~~ha~~----------------------- 342 (695)
T KOG3523|consen 287 KELRSTLSASDRHHLFSNIQDVR-EVSERFLCDLEARLEENIFIDDICDIVEDHAAK----------------------- 342 (695)
T ss_pred HHHHHhcChHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhCchhhHHHHHHHHhccc-----------------------
Confidence 33467788889999999999996 889999999999998776678899999997755
Q ss_pred hhhHHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCC
Q psy480 86 FKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLS 165 (283)
Q Consensus 86 f~~~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (283)
++.+|+.||.|.-.-..++..++..|++|.+.++..+.++ .|.+++
T Consensus 343 ----~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p------------------------------~C~~Lp 388 (695)
T KOG3523|consen 343 ----HFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSP------------------------------KCQGLP 388 (695)
T ss_pred ----ccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCc------------------------------cccCCC
Confidence 5799999999999999999999999999999999988765 799999
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccc
Q psy480 166 FFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISG-KLSTRPL 244 (283)
Q Consensus 166 L~~lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g-~~~~~~L 244 (283)
|.+|||.|+|||+|||||++.+++.|++.+.+|.....|+..+++++..+|+..+++|.+..|..|.++|+- +....+|
T Consensus 389 l~SFLiLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PL 468 (695)
T KOG3523|consen 389 LRSFLILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPL 468 (695)
T ss_pred chhhhhchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 3223579
Q ss_pred cccCceEEEecceeeccccc
Q psy480 245 ADVHRVLLRQDDVTQLVSAL 264 (283)
Q Consensus 245 ~~~~R~LI~eG~l~~~~~~~ 264 (283)
+...|+|++.|+|+.+....
T Consensus 469 iS~sRwLvk~GELt~l~~~~ 488 (695)
T KOG3523|consen 469 VSQSRWLVKRGELTQLVERR 488 (695)
T ss_pred ccchhhhhhccccceeeccc
Confidence 99999999999999887433
No 3
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.92 E-value=1.3e-24 Score=184.53 Aligned_cols=147 Identities=32% Similarity=0.541 Sum_probs=130.9
Q ss_pred CChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCC-CCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhH
Q psy480 11 TSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWD-RDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSI 89 (283)
Q Consensus 11 ~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~-~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 89 (283)
...+++...+|+++-+++ ++|..|+..|+++..+|+ ....|||+|.++ ..
T Consensus 33 ~~~~~~~~~iF~~i~~i~-~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~-~~--------------------------- 83 (180)
T smart00325 33 LLSPNELETLFGNIEEIY-EFHRDFLDELEERIEEWDDSPERIGDVFLKL-EE--------------------------- 83 (180)
T ss_pred CCCHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHhcccccccHHHHHHHHh-hH---------------------------
Confidence 356678889999876664 888999999999999984 678899999985 22
Q ss_pred HHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhh
Q psy480 90 VLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGL 169 (283)
Q Consensus 90 ~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (283)
+++.|..||.+++.+...+.. +++|+.|..|++.++..+ .+++++|.+|
T Consensus 84 ~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~------------------------------~~~~~~l~~~ 132 (180)
T smart00325 84 FFKIYSEYCSNHPDALELLKK-LKKNPRFQKFLKEIESSP------------------------------QCRRLTLESL 132 (180)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-hhcChhHHHHHHHHhCCh------------------------------hhccCCHHHH
Confidence 469999999999999999999 688999999999987653 3467899999
Q ss_pred hhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy480 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNE 217 (283)
Q Consensus 170 Li~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~ 217 (283)
|++||||++||++||++|+++||++|+||..+.+|++.++.++..||+
T Consensus 133 L~~PvqRl~rY~lll~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 133 LLKPVQRLTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred HhHHHHHhccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999985
No 4
>KOG3520|consensus
Probab=99.92 E-value=6.7e-25 Score=224.35 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=173.6
Q ss_pred HHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCC-CCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHH
Q psy480 14 EEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDR-DHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLE 92 (283)
Q Consensus 14 ~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~-~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~ 92 (283)
.+++..|||.+-++ .++|..|+..|+++..+|.. ...|||+++.+|+.+... .+.+
T Consensus 428 ~~~l~~LFP~LdeL-~eiH~~f~~~lk~rr~e~~~vI~~IGDlLl~~FsGe~ae----------------------~L~~ 484 (1167)
T KOG3520|consen 428 QEELNKLFPCLDEL-IEIHSSFLQRLKERRKESLVVIKRIGDLLLDQFSGENAE----------------------RLKK 484 (1167)
T ss_pred HHHHHHhcccHHHH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCchHHH----------------------HHHH
Confidence 45777899965555 79999999999999999977 688999999999876543 2358
Q ss_pred hHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhc
Q psy480 93 IYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVK 172 (283)
Q Consensus 93 ~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~ 172 (283)
+|+.||+++..|++.++.+..++++|+.|++++++++ .|+++.|.++++.
T Consensus 485 ~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p------------------------------~cRRL~lkd~I~~ 534 (1167)
T KOG3520|consen 485 TYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNP------------------------------VCRRLGLKDCILL 534 (1167)
T ss_pred HHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcch------------------------------HHHhhcchHHHHH
Confidence 9999999999999999999999999999999998764 7899999999999
Q ss_pred ccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----C----Cccc
Q psy480 173 PVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKL----S----TRPL 244 (283)
Q Consensus 173 PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~----~----~~~L 244 (283)
.+|||++|||||+.|+|||..+..|++.|.+|++..++++.+||+.++++|+..+|.+|+++++-.. . -..+
T Consensus 535 v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~s~~~~~~~~~F~kl 614 (1167)
T KOG3520|consen 535 VTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAKSLSKYKNGEEFRKL 614 (1167)
T ss_pred HHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998221 0 0122
Q ss_pred cccCceEEEecceeeccccccCC
Q psy480 245 ADVHRVLLRQDDVTQLVSALVAR 267 (283)
Q Consensus 245 ~~~~R~LI~eG~l~~~~~~~~~r 267 (283)
--..|+|||+|.|++........
T Consensus 615 dLt~rkLihdG~Ltwk~~~gk~~ 637 (1167)
T KOG3520|consen 615 DLTRRKLIHDGPLTWKTARGKTK 637 (1167)
T ss_pred hhhhhheeccCceEEeeccCchh
Confidence 23389999999999876544443
No 5
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.91 E-value=8.3e-24 Score=179.75 Aligned_cols=144 Identities=30% Similarity=0.480 Sum_probs=129.8
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCC-CCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHH
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWD-RDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIV 90 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~-~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 90 (283)
..++++..+|+++-++ .++|..|+..|+++..+|. ....||++|.++.. +
T Consensus 37 ~~~~~~~~iF~~i~~i-~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~~~----------------------------~ 87 (181)
T cd00160 37 LSPEEVELLFGNIEEI-YEFHRIFLKSLEERVEEWDKSGPRIGDVFLKLAP----------------------------F 87 (181)
T ss_pred CCHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHhccCcccchHHHHHHHhhh----------------------------H
Confidence 5578889999987666 4888899999999999997 67889999998653 3
Q ss_pred HHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhh
Q psy480 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLM 170 (283)
Q Consensus 91 l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lL 170 (283)
+++|..||.+++.+...+..+.+.++.|.+|++.++. .+++.+|.++|
T Consensus 88 ~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~--------------------------------~~~~~~l~~~L 135 (181)
T cd00160 88 FKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES--------------------------------ECGRLKLESLL 135 (181)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH--------------------------------hcccCCHHHHh
Confidence 6999999999999999999999899999999998764 13678999999
Q ss_pred hcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy480 171 VKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLN 216 (283)
Q Consensus 171 i~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in 216 (283)
++||||++||++||++|+|+||++||||..+..|++.+++++..||
T Consensus 136 ~~PvQRl~rY~lLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 136 LKPVQRLTKYPLLLKELLKHTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred hhhHHHhchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999987
No 6
>KOG4305|consensus
Probab=99.89 E-value=9.6e-23 Score=207.89 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=165.3
Q ss_pred hhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHHH
Q psy480 17 CHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSE 96 (283)
Q Consensus 17 ~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~~ 96 (283)
+...|-.+-++ ..+|..||.+|..|...-+.+..|||||+.++.+ ++.|..
T Consensus 380 i~~vF~n~~~i-i~ln~~LL~aL~~r~k~~G~V~~IGdIll~~lp~----------------------------~~~yi~ 430 (1029)
T KOG4305|consen 380 IAHVFGNIEEI-IQLNEKLLKALRVRQKLSGVVEGIGDILLAWLPK----------------------------AEPYIS 430 (1029)
T ss_pred HHHHHhhHHHH-HHHHHHHHHHHHHhhccCCccchHHHHHHHHhhh----------------------------hhHHHH
Confidence 55566665555 5888999999999998888889999999997754 467999
Q ss_pred HHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcccch
Q psy480 97 FINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQR 176 (283)
Q Consensus 97 Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~PvQR 176 (283)
||++++.|...++..++.|++|+.|+++|++++ .|++++|.+||.+|+||
T Consensus 431 Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp------------------------------~~rkl~L~~FL~kp~sR 480 (1029)
T KOG4305|consen 431 YGANQAYAKALIEQKKKQNPRFARFLKECESSP------------------------------ESRKLDLVSFLTKPTSR 480 (1029)
T ss_pred HHhhhHHHHHHHHHHhccCchHHHHHHHHHhCh------------------------------hhhccchhhhhccccch
Confidence 999999999999999999999999999999875 57889999999999999
Q ss_pred hhhHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCccccccCceEE
Q psy480 177 FPQFILFLQDLLNHT-GHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSIS---GKLSTRPLADVHRVLL 252 (283)
Q Consensus 177 i~RY~LLL~~Llk~T-p~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~---g~~~~~~L~~~~R~LI 252 (283)
+.||||||++++||| |.+|||++.|.+|+..++.++..+|...+++|+..++.++..++. |......+.+|.|.|+
T Consensus 481 l~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qllfe~~e~~~L~l~d~~R~l~ 560 (1029)
T KOG4305|consen 481 LQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLLFEPGEAVNLGLNDPERKLI 560 (1029)
T ss_pred hheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhhccccccccccccChhhhcc
Confidence 999999999999999 677799999999999999999999999999999999999999885 3333357888999999
Q ss_pred Eecceeeccc
Q psy480 253 RQDDVTQLVS 262 (283)
Q Consensus 253 ~eG~l~~~~~ 262 (283)
.+|.|.+...
T Consensus 561 fkgil~~~~~ 570 (1029)
T KOG4305|consen 561 FKGILKRKEL 570 (1029)
T ss_pred eeeeeeeccc
Confidence 9998876543
No 7
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.89 E-value=3.4e-22 Score=168.54 Aligned_cols=149 Identities=30% Similarity=0.521 Sum_probs=131.0
Q ss_pred CCChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhH
Q psy480 10 ATSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSI 89 (283)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 89 (283)
....+.+...+++++-+++ ++|..|+..|+.++++|.....||++|++ +..
T Consensus 32 ~~l~~~~~~~lf~~i~~l~-~~h~~ll~~L~~~~~~~~~~~~i~~if~~-~~~--------------------------- 82 (180)
T PF00621_consen 32 PLLSEDEIKSLFGNIEELI-EIHQQLLESLEERMKEWSNIQSIGDIFLK-FEP--------------------------- 82 (180)
T ss_dssp TSSHHHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHTTSSGGGHHHHHHH-HTT---------------------------
T ss_pred ccCCHHHHHHHhcchhhhh-hHHHHHHHHHHHHHHhhhccchhhhhhhh-ccc---------------------------
Confidence 4456677888887766664 77888888899988889888999999998 433
Q ss_pred HHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhh
Q psy480 90 VLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGL 169 (283)
Q Consensus 90 ~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (283)
++++|..||.+++.+...++++.+.+..|..|++.++.++ ..+..++.++
T Consensus 83 ~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------------~~~~~~l~~~ 132 (180)
T PF00621_consen 83 FLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSP------------------------------ESKRLSLSSL 132 (180)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSH------------------------------HCTTSTHHHH
T ss_pred cccceeccchheechhhhhhHHHhhccccccccccccccc------------------------------cccCCCHHHH
Confidence 3589999999999999999998888888999999887643 4567899999
Q ss_pred hhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy480 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNE 217 (283)
Q Consensus 170 Li~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~ 217 (283)
|.+|+||++||+++|++|+++||++|+|+..+..|+..+++++..||+
T Consensus 133 l~~Piqrl~rY~lll~~llk~t~~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 133 LIKPIQRLPRYPLLLKRLLKNTPPDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999996
No 8
>KOG3522|consensus
Probab=99.82 E-value=3.2e-20 Score=184.10 Aligned_cols=189 Identities=39% Similarity=0.555 Sum_probs=159.5
Q ss_pred HHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhH
Q psy480 15 EECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIY 94 (283)
Q Consensus 15 ~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y 94 (283)
.|+++.+|++++.||+|..+ ++.+...|+..+.+|+.|..+|+++.+ ..+|
T Consensus 43 ~eif~~i~ell~~he~fl~~----l~s~~~~w~~qq~vga~~v~~fSk~~v-------------------------~~~Y 93 (925)
T KOG3522|consen 43 DEIFQNIPELLEIHEDFLEQ----LCSRDQQWDEQQKVGASFVYSFSKTAV-------------------------LAAY 93 (925)
T ss_pred HHHHHhhHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHhhhHHHH-------------------------HHHH
Confidence 47888899999999888777 889999999999999999999998775 5999
Q ss_pred HHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhccc
Q psy480 95 SEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPV 174 (283)
Q Consensus 95 ~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~Pv 174 (283)
..||+|+.+|...+.... .++|..|++ ++++|
T Consensus 94 ~~y~nn~~~A~~~l~~~~--rpaf~~Fl~---------------------------------------------l~~kP- 125 (925)
T KOG3522|consen 94 SKYVNNFKRAKCALRNKK--RPAFSKFLE---------------------------------------------LMIKP- 125 (925)
T ss_pred HHHHhchhHHHHHHHHhc--chHHHHHHH---------------------------------------------HHhcc-
Confidence 999999999999997633 777777755 47789
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CccccccCceEEE
Q psy480 175 QRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLS-TRPLADVHRVLLR 253 (283)
Q Consensus 175 QRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~-~~~L~~~~R~LI~ 253 (283)
|+|||.||++ |+||||.+|||+..|+.|+..++.++..+|+.++.++...++.+..+.|++..+ ...|..+.|.|+.
T Consensus 126 -r~P~y~lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl 203 (925)
T KOG3522|consen 126 -RFPRYELLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLL 203 (925)
T ss_pred -CCchHHHHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHH
Confidence 9999999999 999999999999999999999999999999999999888888777777765433 2568888999998
Q ss_pred ecceeeccccccCC-----------cccceeccccCCCCC
Q psy480 254 QDDVTQLVSALVAR-----------SSGKLEGAGLNFSGD 282 (283)
Q Consensus 254 eG~l~~~~~~~~~r-----------~~~~l~~a~~~~~~~ 282 (283)
+..+....-..+++ +++.|.|+..++.++
T Consensus 204 ~dl~se~vy~~rk~d~~~~~~rd~i~~~~Lk~~sg~~r~~ 243 (925)
T KOG3522|consen 204 QDLVSETVYTGRKKDRKAFLFRDLIVNTDLKRASGSSRKP 243 (925)
T ss_pred HHHhhhhhhccccchhhheeeeeeeeeeeeeeeeceecCC
Confidence 87777666555544 677777777777665
No 9
>KOG2996|consensus
Probab=99.78 E-value=2.3e-18 Score=165.10 Aligned_cols=173 Identities=23% Similarity=0.353 Sum_probs=143.4
Q ss_pred HHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHHHHHHcHHHHHHHH
Q psy480 29 EDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVA 108 (283)
Q Consensus 29 ~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~~Y~~n~~~a~~~l 108 (283)
-.+|..|+.+++..+..- ...+|+.||.+. ++. +-+|..||+|.+.|.+.+
T Consensus 247 ~klHt~ll~ei~~sv~v~-~~qtl~qVFiky--ker--------------------------~liYG~YCS~~e~a~k~l 297 (865)
T KOG2996|consen 247 NKLHTALLAEIEYSVKVA-GGQTLYQVFIKY--KER--------------------------LLIYGKYCSNVESARKLL 297 (865)
T ss_pred HHHHHHHHHHhHHHhhCC-CcccHHHHHHHH--HHH--------------------------HhhhhhhhccchHHHHHH
Confidence 356666666677766432 347899999983 222 359999999999999999
Q ss_pred HHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcccchhhhHHHHHHHHH
Q psy480 109 RGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLL 188 (283)
Q Consensus 109 ~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~PvQRi~RY~LLL~~Ll 188 (283)
.+..+.++.++.-+++|.... +.+++.|.++|..|+||+.+|+|||++|.
T Consensus 298 n~llktrEdv~~kleEct~r~------------------------------nngkF~l~DLL~VPmQRvlKYhLLLkEL~ 347 (865)
T KOG2996|consen 298 NELLKTREDVSRKLEECTARA------------------------------NNGKFTLRDLLVVPMQRVLKYHLLLKELV 347 (865)
T ss_pred HHHHHHhHHHHHHHHHHHhhh------------------------------cCCceeeceeeeeeHHHHHHHHHHHHHHH
Confidence 999999999999999986543 44789999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceEEEecceeeccccc
Q psy480 189 NHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSAL 264 (283)
Q Consensus 189 k~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~LI~eG~l~~~~~~~ 264 (283)
|||....++. .|..|++.|+.++.+||+.+++.|....+-+++..|++.. .+|..-+|.=| .|++...+-..
T Consensus 348 kht~~a~ek~-~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL~--~pl~~~GRpki-DGElki~s~~~ 419 (865)
T KOG2996|consen 348 KHTDEASEKR-NLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENLS--QPLHDFGRPKI-DGELKITSTQA 419 (865)
T ss_pred HhcccCChhh-hHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhhc--chHHHhCCCCc-CceEEEeehhc
Confidence 9998865554 9999999999999999999999999999999999999864 35777888776 78887655433
No 10
>KOG3518|consensus
Probab=99.75 E-value=3.2e-17 Score=149.00 Aligned_cols=184 Identities=20% Similarity=0.321 Sum_probs=140.1
Q ss_pred hhccCchhHHHHHhHHHHHHhhhhhhcCCC---------------CCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHH
Q psy480 19 QLHPSSGSEHEDLSSDVDSESNNPVANWDR---------------DHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLV 83 (283)
Q Consensus 19 ~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~---------------~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (283)
++.-++++..+-+..++-..++..++-... -++|-|||- |+++.+.++... +.....+.
T Consensus 124 riaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifa--fnkel~n~ldaa----dld~v~ia 197 (521)
T KOG3518|consen 124 RIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFA--FNKELLNDLDAA----DLDCVAIA 197 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHH--HHHHHHHHHhhc----ccchHHHH
Confidence 355567777666666665555544432211 155667765 667666555432 22345566
Q ss_pred HHhhh--HHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhcccc
Q psy480 84 MCFKS--IVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSM 161 (283)
Q Consensus 84 ~~f~~--~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (283)
.||.+ .-+..|.+||.||++.+.++.+|+ .|+-.+.++++++. ...
T Consensus 198 ~cfve~s~efe~yieyctny~rmmatl~~~~-q~~ilaka~qerq~-------------------------------al~ 245 (521)
T KOG3518|consen 198 ECFVEKSEEFEDYIEYCTNYHRMMATLTECM-QNKILAKAFQERQE-------------------------------ALK 245 (521)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHH-HhHHHHHHHHHHHH-------------------------------HHh
Confidence 77766 456899999999999999998854 56677777766543 234
Q ss_pred CCCChhhhhhcccchhhhHHHHHHHHHHhcCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy480 162 DRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHG-HPD-RMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKL 239 (283)
Q Consensus 162 ~~~~L~~lLi~PvQRi~RY~LLL~~Llk~Tp~~-~pd-~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~ 239 (283)
..++|.+||++|||||.+|+|+|.++.++.|.+ ||+ +..+.+|.+.|+.++-+||+.++++|...++-+|+..+..|.
T Consensus 246 hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwk 325 (521)
T KOG3518|consen 246 HSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWK 325 (521)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999965 555 889999999999999999999999999999999999999885
Q ss_pred C
Q psy480 240 S 240 (283)
Q Consensus 240 ~ 240 (283)
.
T Consensus 326 a 326 (521)
T KOG3518|consen 326 A 326 (521)
T ss_pred c
Confidence 4
No 11
>KOG3521|consensus
Probab=99.66 E-value=1.4e-15 Score=148.02 Aligned_cols=128 Identities=20% Similarity=0.386 Sum_probs=117.6
Q ss_pred chhhHHHHHHHhhhHHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHH
Q psy480 75 IGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQ 154 (283)
Q Consensus 75 ~~~~~~~~~~~f~~~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (283)
+-.||..|...| ..|..||..+..++..++++.+.|+.|++|+..|+++.
T Consensus 262 lq~GFl~f~s~f-----~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk------------------------- 311 (846)
T KOG3521|consen 262 LQNGFLDFGSWF-----RPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQK------------------------- 311 (846)
T ss_pred HHHHHHHHHHhh-----hHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhh-------------------------
Confidence 345788888765 99999999999999999999999999999999999864
Q ss_pred hhhccccCCCChhhhhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy480 155 SRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKS 234 (283)
Q Consensus 155 ~~~~~~~~~~~L~~lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~ 234 (283)
.|+++.|.+.|++|+|||+||+|||+.++|+|++ -.+.+.+..+++.++..+.+||..++..+..++|...-++
T Consensus 312 -----~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t~d-~~e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~r 385 (846)
T KOG3521|consen 312 -----NCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVTTD-EREREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRR 385 (846)
T ss_pred -----hhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 7899999999999999999999999999999976 4678889999999999999999999999999999999999
Q ss_pred hcCC
Q psy480 235 ISGK 238 (283)
Q Consensus 235 i~g~ 238 (283)
|++.
T Consensus 386 Ie~y 389 (846)
T KOG3521|consen 386 IEGY 389 (846)
T ss_pred cCcc
Confidence 9853
No 12
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.65 E-value=1.7e-16 Score=157.99 Aligned_cols=189 Identities=16% Similarity=0.188 Sum_probs=166.1
Q ss_pred HHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHh
Q psy480 14 EEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEI 93 (283)
Q Consensus 14 ~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~ 93 (283)
++..+..+..+.+.| ..+.+|+.+|..+..--+-+..|||||++++. +++.
T Consensus 526 ~~Fik~vf~~i~~i~-avn~k~~~AL~~rQ~lsPiv~~I~DifL~~vP----------------------------~Fep 576 (1175)
T COG5422 526 RNFIKHVFANINEIY-AVNSKLLKALTNRQCLSPIVNGIADIFLDYVP----------------------------KFEP 576 (1175)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHhhcccccccccchHHHHHhhhh----------------------------hhhH
Confidence 346677888888887 89999999999998777778999999998654 3589
Q ss_pred HHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcc
Q psy480 94 YSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKP 173 (283)
Q Consensus 94 Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~P 173 (283)
+..|..+.+.|.-..+.+...|+.|+.|..+.+.-. ...++.++.||.+|
T Consensus 577 fiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~------------------------------~s~k~~ld~yLtk~ 626 (1175)
T COG5422 577 FIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLD------------------------------ESRKLELDGYLTKP 626 (1175)
T ss_pred HHHhhcccchhheeeeeccccCcchhhhhHHHHhcc------------------------------hhhhhcccceecCC
Confidence 999999999999999998889999999999987422 34678899999999
Q ss_pred cchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccccccCceE
Q psy480 174 VQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLS--TRPLADVHRVL 251 (283)
Q Consensus 174 vQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~--~~~L~~~~R~L 251 (283)
+-|++||+||+++++++|+++.||++.+.++++.++++...+|.....+|+..-+..+..+|.-+++ ...|.++.|++
T Consensus 627 ~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~fk~e~~~lgl~D~~rki 706 (1175)
T COG5422 627 TTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKPEYVNLGLNDEYRKI 706 (1175)
T ss_pred cccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhccCchhhcccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988876653 25788999999
Q ss_pred EEecceeecc
Q psy480 252 LRQDDVTQLV 261 (283)
Q Consensus 252 I~eG~l~~~~ 261 (283)
|++|.+.+..
T Consensus 707 i~kgvlk~ka 716 (1175)
T COG5422 707 IFKGVLKRKA 716 (1175)
T ss_pred HHhhhhhhhh
Confidence 9999776543
No 13
>KOG3524|consensus
Probab=99.56 E-value=3.6e-15 Score=145.92 Aligned_cols=155 Identities=25% Similarity=0.402 Sum_probs=135.8
Q ss_pred HHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhh
Q psy480 89 IVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFG 168 (283)
Q Consensus 89 ~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 168 (283)
...+.|-+|++-|+.....+..|-+.||+|++|++.-++. |.|++++|.+
T Consensus 464 el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~k------------------------------pecgRq~l~d 513 (850)
T KOG3524|consen 464 ELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSK------------------------------PECGRQKLTD 513 (850)
T ss_pred HHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccc------------------------------hhhhhhcccc
Confidence 3568999999999999999999999999999999986543 3689999999
Q ss_pred hhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccC
Q psy480 169 LMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVH 248 (283)
Q Consensus 169 lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~ 248 (283)
+++.|+||+|--.|||++|.| -.+++|...+.+|...+++|..+||+.++.+|+.-...+.-..++|+|+ .|+..+
T Consensus 514 lmirpvqrlpsvilllndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa--~lvssn 589 (850)
T KOG3524|consen 514 LMIRPVQRLPSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPA--ILVSSN 589 (850)
T ss_pred hhccchhhhhHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCch--hheecc
Confidence 999999999999999999999 4567899999999999999999999999999999999999999999985 699999
Q ss_pred ceEEEeccee-eccccccCC--------cccceecccc
Q psy480 249 RVLLRQDDVT-QLVSALVAR--------SSGKLEGAGL 277 (283)
Q Consensus 249 R~LI~eG~l~-~~~~~~~~r--------~~~~l~~a~~ 277 (283)
|.||.+-++. .+++..-+| |+|++.-+.+
T Consensus 590 rsfi~~lev~i~l~~~~~~rg~~~~l~lf~dvlei~k~ 627 (850)
T KOG3524|consen 590 RSFIRELEVSIALTSPGLQRGAKMKLFLFHDVLEITKI 627 (850)
T ss_pred chHHHHhhhhhhhcCcccccccceeeehhhhHHHHHHH
Confidence 9999987773 555555555 7777765543
No 14
>KOG3519|consensus
Probab=99.54 E-value=1.7e-14 Score=147.75 Aligned_cols=188 Identities=24% Similarity=0.304 Sum_probs=144.1
Q ss_pred HHHhhhhccCchhHHHHHhHHHHHHhhhhhhcC---CCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHH
Q psy480 14 EEECHQLHPSSGSEHEDLSSDVDSESNNPVANW---DRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIV 90 (283)
Q Consensus 14 ~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~---~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 90 (283)
.+....++-+ ++.--.|+..|+..|++.+..- +....||.+|+.+.+.
T Consensus 375 ~~~~~~~f~n-i~~i~~f~~~fl~~L~~~~~~~~~~~~~~~ig~~fL~~~~~---------------------------- 425 (756)
T KOG3519|consen 375 VNQLDLLFGN-IEDILRFQKEFLKTLEQQINPELIPPSLSEIGPVFLEQLDV---------------------------- 425 (756)
T ss_pred HHHHHHHccC-HHHHHHHHHHHHHHHHHhcchhhcchhHhHHHHHHHHhccc----------------------------
Confidence 3344444444 3333477788888888887533 3346689999886543
Q ss_pred HHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhh
Q psy480 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLM 170 (283)
Q Consensus 91 l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lL 170 (283)
+.+|.+||++++.+...+.. .++++++..|+..|.... .....+|+++|
T Consensus 426 f~~ys~yc~~h~~~~~~l~~-~~~~~~~~~~l~~~~~~~------------------------------~~~~~~L~s~l 474 (756)
T KOG3519|consen 426 FKIYSEYCNNHPKAQKKLSK-LKKKKKVKEFLEACNLLQ------------------------------QHSNSSLSSFL 474 (756)
T ss_pred ceeechhhhccchHHHHHHH-Hhhhhhhhhhhhhhhhhh------------------------------ccccCCchhhh
Confidence 47888899999999999987 567789999999986542 22338999999
Q ss_pred hcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCCCcc
Q psy480 171 VKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKS-------ISGKLSTRP 243 (283)
Q Consensus 171 i~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~-------i~g~~~~~~ 243 (283)
++|+||+.+|||++.++++.|+.++.||..+..|...|+.++..||+.++..|....+.+-... +.++.. ..
T Consensus 475 ~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~~~~~~~~~~-~~ 553 (756)
T KOG3519|consen 475 LKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSGSNSLELSEG-EL 553 (756)
T ss_pred ccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhccchhhhccCC-Cc
Confidence 9999999999999999999999999999999999999999999999999999996555443333 444433 44
Q ss_pred ccccCceEEEecceeeccc
Q psy480 244 LADVHRVLLRQDDVTQLVS 262 (283)
Q Consensus 244 L~~~~R~LI~eG~l~~~~~ 262 (283)
+......++..|+..+...
T Consensus 554 ~~~~Ss~l~~~~~~~~~~q 572 (756)
T KOG3519|consen 554 LLDNSSELLLSGPSLKIRQ 572 (756)
T ss_pred ccccccceeeccchhhhhh
Confidence 5557777777777766543
No 15
>KOG3531|consensus
Probab=99.41 E-value=9e-14 Score=138.31 Aligned_cols=182 Identities=18% Similarity=0.264 Sum_probs=156.9
Q ss_pred HHHhHHHHHHhhhhhhcCCCC--------CchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHHHHHHc
Q psy480 29 EDLSSDVDSESNNPVANWDRD--------HKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINN 100 (283)
Q Consensus 29 ~~~~~~ll~~L~~~~~~~~~~--------~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~~Y~~n 100 (283)
.+++..||..+++|+..|+.. ..||||.+++.-. +++|.+|...
T Consensus 585 ~k~h~~fLk~ieeria~weGrsnani~~~~~igDVmLk~m~~----------------------------l~i~~~~~q~ 636 (1036)
T KOG3531|consen 585 TKFHEGFLKEIEERIALWEGRSNANIVIEQRIGDVMLKNMRS----------------------------LKITTTTTQR 636 (1036)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCceeeeeccCCcchhhhhc----------------------------cchhhhhHHh
Confidence 378888888999999999752 4589999985422 4899999999
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcccchhhhH
Q psy480 101 FSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQF 180 (283)
Q Consensus 101 ~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~PvQRi~RY 180 (283)
|.+...+++.-.+...+|..+.++.+... ...++++.||.+|++|+..|
T Consensus 637 h~~~l~~~t~~~k~~~r~~~v~kefelqk-------------------------------vcyLP~~~fllkpL~rllhy 685 (1036)
T KOG3531|consen 637 HAETLTTLTTTSKVLTRLEAVYKEFELQK-------------------------------VCYLPLNTFLLKPLSRLLHY 685 (1036)
T ss_pred HHHHHHHHhhcchhhhhHHhhhccHHhhh-------------------------------ccccccchhhhccccHHHHH
Confidence 99999999998888999999988876542 24689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceEEEecceeec
Q psy480 181 ILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQL 260 (283)
Q Consensus 181 ~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~LI~eG~l~~~ 260 (283)
.+.|+.|..|.+++|.||.....+...+-+....|...+.+.| +|.+|++.+.|- .+|+.|+|++|++|.+.+.
T Consensus 686 q~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~l~Elkrdl~s~---e~LV~p~rE~ir~g~llK~ 759 (1036)
T KOG3531|consen 686 QLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---KLRELKRDLASI---ENLVHPGREFIRSGCLLKL 759 (1036)
T ss_pred HHHHHHhhcccCCCccchHHHhhcccccccccccccccchhHH---HHHHHHHhhhcc---ccccCcchhhhhcCCchhh
Confidence 9999999999999999999999999999999999888888887 899999999976 5799999999999999998
Q ss_pred cc-cccCC----cccceecc
Q psy480 261 VS-ALVAR----SSGKLEGA 275 (283)
Q Consensus 261 ~~-~~~~r----~~~~l~~a 275 (283)
+. +..+| ++|+|+-.
T Consensus 760 skkgLqqrmfFLfsdillyt 779 (1036)
T KOG3531|consen 760 SKKGLQQRMFFLFSDILLYT 779 (1036)
T ss_pred ccccchhhhhhhhhhhheec
Confidence 75 55555 78887654
No 16
>KOG2070|consensus
Probab=99.37 E-value=5.2e-12 Score=119.95 Aligned_cols=160 Identities=19% Similarity=0.279 Sum_probs=125.8
Q ss_pred HHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhH
Q psy480 15 EECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIY 94 (283)
Q Consensus 15 ~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y 94 (283)
.|..+|.-+.-++ -.|++++...|+++.+.-.+..+||.+|+..... +..+|
T Consensus 140 ~ey~~LmgNfeeI-~t~~qdL~~qlEec~~~~~~q~RVGg~fln~ap~---------------------------mkt~~ 191 (661)
T KOG2070|consen 140 AEYSYLMGNFEEI-CTFQQDLVQQLEECTKLPEAQQRVGGCFLNLAPQ---------------------------MKTLY 191 (661)
T ss_pred HHHHHHhcchHHh-HhHHHHHHHHHHHhhcCchhhhhhhhHHHhhhHH---------------------------HHHHH
Confidence 4566666664333 5777888888999887767788999999985433 56999
Q ss_pred HHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhccc
Q psy480 95 SEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPV 174 (283)
Q Consensus 95 ~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~Pv 174 (283)
..||.|||.|+..|.+ .+..+.+|++....+. .+-+-|---|.+|.
T Consensus 192 ~aYcanHP~AV~VL~k---~~dELek~me~Qgass-------------------------------pg~lvLttgLSkPf 237 (661)
T KOG2070|consen 192 LAYCANHPSAVNVLTK---HSDELEKFMETQGASS-------------------------------PGILVLTTGLSKPF 237 (661)
T ss_pred HHHHhcCchhhhHHHH---hHHHHHHHHHhcCCCC-------------------------------CCeEEEecccchHH
Confidence 9999999999999965 5667788888765432 24455667789999
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy480 175 QRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGK 238 (283)
Q Consensus 175 QRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~ 238 (283)
.|+-||+-||++|-+|++..|||+.+++++....+++...+.+..++.|-...+ +..-+.+|
T Consensus 238 rrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEleLqi--Lt~~i~~w 299 (661)
T KOG2070|consen 238 RRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELELQI--LTEPIRNW 299 (661)
T ss_pred HHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hccccccc
Confidence 999999999999999999999999999999999999999998877776654333 33445555
No 17
>KOG0689|consensus
Probab=98.95 E-value=5.2e-10 Score=107.42 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=97.2
Q ss_pred cCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHHHHHHcH
Q psy480 22 PSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNF 101 (283)
Q Consensus 22 ~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~~Y~~n~ 101 (283)
-.++++|... |+.+++.+.. +...+|.+|.+|..+- --.|..||.|.
T Consensus 113 ~~i~~~h~~~---fl~e~e~~~r---~~~~~~~~f~kh~~k~---------------------------~~~y~~y~q~k 159 (448)
T KOG0689|consen 113 KEIYEFHKKE---FLPELERCER---DPLELGQAFAKHERKN---------------------------SVLYVTYCQNK 159 (448)
T ss_pred HHHHHhhccc---CcchHHHhhh---CHHHHHHHHHHHHHHh---------------------------hhhhhhhhcCC
Confidence 3456666555 5666666554 3567899999987651 12999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcccchhhhHH
Q psy480 102 SAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFI 181 (283)
Q Consensus 102 ~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~PvQRi~RY~ 181 (283)
|.....+.+ -.+..|.+.+... ...++++.+||++||||+++|.
T Consensus 160 p~s~~~~~~-----~~~~~~f~~~~~~-------------------------------~~~~l~l~~~l~kPiQR~~kYq 203 (448)
T KOG0689|consen 160 PKSDYLLAE-----YDNEAFFQEYQTQ-------------------------------LGHKLDLSSYLIKPVQRIMKYQ 203 (448)
T ss_pred CCCccccee-----cccchhhHHHhhh-------------------------------cccccccchhhhhhhHHHHHHH
Confidence 998433322 1223455555442 3467899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy480 182 LFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERK 219 (283)
Q Consensus 182 LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~ 219 (283)
+||+++++.+.....|+..+.+|.+.|+.+...+|+.+
T Consensus 204 lLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~ 241 (448)
T KOG0689|consen 204 LLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMM 241 (448)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhh
Confidence 99999999999888999999999999999998877754
No 18
>KOG4240|consensus
Probab=98.78 E-value=1.1e-08 Score=105.38 Aligned_cols=126 Identities=22% Similarity=0.267 Sum_probs=88.3
Q ss_pred hHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHHHHHHcHHHHH
Q psy480 26 SEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAM 105 (283)
Q Consensus 26 ~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~~Y~~n~~~a~ 105 (283)
++-+.=+..||..|++.-..| ..||++|+.+.+ ++++|..||.|.|.+.
T Consensus 686 eiy~fhn~~~L~eLe~y~~~p---E~Vg~~fle~~d----------------------------~fqly~~Yc~nke~S~ 734 (1025)
T KOG4240|consen 686 EIYEFHNDIFLSELEKYEQLP---EDVGHCFLERAD----------------------------DFQLYAKYCQNKELSN 734 (1025)
T ss_pred HHHHHHhhHHHHHhhhhccCH---HHHHHHHHHHHH----------------------------HHHHHHHHHhCCcchH
Confidence 333333555666676654433 567777776443 2499999999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcccchhhhHHHHHH
Q psy480 106 DVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQ 185 (283)
Q Consensus 106 ~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~PvQRi~RY~LLL~ 185 (283)
........ ..|..+++.. ..-.+++.+||++|||||++|-+||+
T Consensus 735 ql~~~~a~-----~~ff~e~qr~-------------------------------~~l~l~~~S~l~kpvqritkYqlllk 778 (1025)
T KOG4240|consen 735 QLIRLHAG-----CSFFQEIQRR-------------------------------HGLELSISSYLIKPVQRITKYQLLLK 778 (1025)
T ss_pred HHHHhccc-----ccccHHHHHH-------------------------------hhhhhhhHHHHhHHHHHHHHHHHHHH
Confidence 88865321 1233343321 11234899999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy480 186 DLLNHTGHGHPDRMSLQLALTQLESLAELLNERKRE 221 (283)
Q Consensus 186 ~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~ 221 (283)
+++++-... -..+++|++.|-.|...+|+.+.-
T Consensus 779 ell~~c~e~---~~~lkd~l~~ml~v~k~~nd~mh~ 811 (1025)
T KOG4240|consen 779 ELLKCCCEG---TGDLKDALEVMLSVPKKVNDSMHL 811 (1025)
T ss_pred HHHHhhhhc---hHHHHHHHHHHHhhhhhcccccCH
Confidence 999954433 456899999999999999988753
No 19
>KOG4269|consensus
Probab=98.21 E-value=1.4e-06 Score=88.32 Aligned_cols=191 Identities=21% Similarity=0.256 Sum_probs=138.7
Q ss_pred hhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHHHH
Q psy480 18 HQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEF 97 (283)
Q Consensus 18 ~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~~Y 97 (283)
.--++.+++.|..+... +..+..+|+.....|+.|....+. +..|..|
T Consensus 381 ~~k~s~i~~~hk~~~~~----l~pk~q~~~sqs~~~~~~~~L~S~----------------------------l~n~~af 428 (1112)
T KOG4269|consen 381 FNKFSPIYEIHKEFYDN----LHPKVQQWKSQSNSGGLFQKLASQ----------------------------LGNYLAF 428 (1112)
T ss_pred cccCCCchhhhhhhccc----cCchhhhhhhhhccCccchhhhhh----------------------------cchhhhh
Confidence 33567888888777766 889999999999999999986543 5799999
Q ss_pred HHc--HHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcccc
Q psy480 98 INN--FSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQ 175 (283)
Q Consensus 98 ~~n--~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~PvQ 175 (283)
+.+ |..|+..-..|...++.|+..-....- .....+-+ .....+....|.+|+-
T Consensus 429 ~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~-~~n~~s~~-----------------------sst~~~~~~~l~rpi~ 484 (1112)
T KOG4269|consen 429 VDNESYLVALEMAEKCASSSPQFQCISEQLVV-GVNKDSKD-----------------------SSTWKDEEWLLYRPID 484 (1112)
T ss_pred hcchhhhhhcccccchhhcchhhhhhhhhhee-cccccccc-----------------------cCCccchhhhhccchh
Confidence 999 999999999999999998654333211 11111100 3345678899999999
Q ss_pred hhhhHHHHHHHHHHhcCCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q psy480 176 RFPQFILFLQDLLNHTGHGHPDRM----------SLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLA 245 (283)
Q Consensus 176 Ri~RY~LLL~~Llk~Tp~~~pd~~----------~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~ 245 (283)
|.++..+-|.+++|++|-.|||+. .+++|++.....+..||+.....+ +......
T Consensus 485 ~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~~r----~~~f~ks----------- 549 (1112)
T KOG4269|consen 485 RVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEPRR----LLEFLKS----------- 549 (1112)
T ss_pred hhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhh----hhhhccc-----------
Confidence 999999999999999999999998 899999999999999998765421 1111111
Q ss_pred ccCceEEEecceeecccccc-CC----cccceeccccCC
Q psy480 246 DVHRVLLRQDDVTQLVSALV-AR----SSGKLEGAGLNF 279 (283)
Q Consensus 246 ~~~R~LI~eG~l~~~~~~~~-~r----~~~~l~~a~~~~ 279 (283)
...|++++.+-...+..+.. +| +.+.|+|+++-+
T Consensus 550 ~~~rq~L~d~f~~~v~~~~~~~~~~~~~~~~ll~tk~~~ 588 (1112)
T KOG4269|consen 550 GELRQLLKDVFFVEVEEAQRKLRHVFLFTNSLLCTKLKK 588 (1112)
T ss_pred chhHhhhhhheeeccccccccchhhHHHhhccchhhhhh
Confidence 12466777666665554332 23 677777776644
No 20
>KOG3524|consensus
Probab=94.03 E-value=0.097 Score=53.01 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=115.3
Q ss_pred HhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHH
Q psy480 16 ECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYS 95 (283)
Q Consensus 16 ~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~ 95 (283)
++...+-+.+++| ..+..+.+.+..-..+|......++.+..- ++ .|++.|.
T Consensus 429 eiktifgn~l~I~-~vh~k~~D~l~~l~~nw~e~k~el~kaypp--------------------------yv-nffet~k 480 (850)
T KOG3524|consen 429 EIKTIFGNTLLIV-VVHKKNDDKLLDLAQNWIEAKEELKKAYPP--------------------------YV-NFFETIK 480 (850)
T ss_pred hhcccccCchhhh-hhhccchHHHHHHHHhhHHHHHHHHHhccc--------------------------hh-hHHHHhH
Confidence 4455555555554 444555555555556665555444444431 11 2568899
Q ss_pred HHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcccc
Q psy480 96 EFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQ 175 (283)
Q Consensus 96 ~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~PvQ 175 (283)
+++.-++.....+..+++.|+.+.+|.+.-. .++||+|+|+-| .++.|+|
T Consensus 481 e~~~~cdre~prfhaflKinq~kpecgRq~l---------~dlmirpvqrlp---------------------svillln 530 (850)
T KOG3524|consen 481 ELFDKCDRENPRFHAFLKINQSKPECGRQKL---------TDLMIRPVQRLP---------------------SVILLLN 530 (850)
T ss_pred HHHHHHhccchHHHHHHHccccchhhhhhcc---------cchhccchhhhh---------------------HHHHHHH
Confidence 9998888888889888999999999988754 367888888654 4678999
Q ss_pred hhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy480 176 RFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDI 231 (283)
Q Consensus 176 Ri~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l 231 (283)
++++ +...++.+++....++...+..++...++..+.+++-.+..+.......+
T Consensus 531 dl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa~ 584 (850)
T KOG3524|consen 531 DMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPAI 584 (850)
T ss_pred HHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCchh
Confidence 9999 88899999999999999999999999999999999988877776554443
No 21
>KOG0931|consensus
Probab=91.43 E-value=0.51 Score=45.87 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=68.8
Q ss_pred hhhhcccchhhhHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy480 168 GLMVKPVQRFPQFILFLQDLLNHT----GHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRP 243 (283)
Q Consensus 168 ~lLi~PvQRi~RY~LLL~~Llk~T----p~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~ 243 (283)
+--++|=|++ .|.+.+|+. ..++.+++.|..-++.|++=-- +...+....+....+.|.|+.. +.
T Consensus 341 SPnVKperkM-----~leDFikNLRGvDnGeDIpRell~GIYeRIqk~EL-----ktndDHVsqVqkVer~IVGkk~-~v 409 (627)
T KOG0931|consen 341 SPNVKPERKM-----KLEDFIKNLRGVDNGEDIPRELLVGIYERIQKREL-----KTNDDHVSQVQKVERAIVGKKP-PV 409 (627)
T ss_pred CCCCCHHHhh-----hHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhc-----ccCcchHHHHHHHHHHHhcCCC-cc
Confidence 3334555554 344555543 3445557777666666654322 2233455677778899999854 56
Q ss_pred ccccCceEEEecceeeccccccC-------C----cccceeccccCCCC
Q psy480 244 LADVHRVLLRQDDVTQLVSALVA-------R----SSGKLEGAGLNFSG 281 (283)
Q Consensus 244 L~~~~R~LI~eG~l~~~~~~~~~-------r----~~~~l~~a~~~~~~ 281 (283)
|-.|+|+|||...|+.+++.... | |||.||-++|.-++
T Consensus 410 Ls~phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~kk 458 (627)
T KOG0931|consen 410 LSLPHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQKK 458 (627)
T ss_pred cccCCceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhccC
Confidence 88999999999999999875542 3 99999999886544
No 22
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.50 E-value=0.2 Score=39.23 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=26.2
Q ss_pred CceEEEecceeeccc-cccCC----cccceeccccCCC
Q psy480 248 HRVLLRQDDVTQLVS-ALVAR----SSGKLEGAGLNFS 280 (283)
Q Consensus 248 ~R~LI~eG~l~~~~~-~~~~r----~~~~l~~a~~~~~ 280 (283)
+|.||+||.|+++.. +...| |||+|+.+.+...
T Consensus 1 gR~li~eG~L~K~~rk~~~~R~ffLFnD~LvY~~~~~~ 38 (104)
T cd01218 1 GRVLVGEGVLTKMCRKKPKQRQFFLFNDILVYGNIVIS 38 (104)
T ss_pred CCEEEecCcEEEeecCCCceEEEEEecCEEEEEEeecC
Confidence 699999999999973 34446 9999999876533
No 23
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.89 E-value=0.14 Score=39.31 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=25.2
Q ss_pred ceEEEecceeeccccccC-C----cccceeccccC
Q psy480 249 RVLLRQDDVTQLVSALVA-R----SSGKLEGAGLN 278 (283)
Q Consensus 249 R~LI~eG~l~~~~~~~~~-r----~~~~l~~a~~~ 278 (283)
|.||.+|-|+++..+... | |||+|+||.|.
T Consensus 1 r~Lv~eg~lvel~~~~rK~R~~FLFnDlLvc~~ik 35 (96)
T cd01228 1 RQLVKDSFLVELVEGSRKLRHLFLFTDVLLCAKLK 35 (96)
T ss_pred CcccccceeeeehhCCCcceEEEeeccEEEEEEee
Confidence 789999999999855443 4 99999999985
No 24
>KOG3522|consensus
Probab=83.62 E-value=5.2 Score=41.82 Aligned_cols=67 Identities=7% Similarity=-0.111 Sum_probs=43.5
Q ss_pred HhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHhHH
Q psy480 16 ECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYS 95 (283)
Q Consensus 16 ~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~Y~ 95 (283)
+||..|-+-++. .+-+.++.+.+-.++-.|..+.-|+++|.+.+++... .+.|.
T Consensus 54 ~~he~fl~~l~s-~~~~w~~qq~vga~~v~~fSk~~v~~~Y~~y~nn~~~-------------------------A~~~l 107 (925)
T KOG3522|consen 54 EIHEDFLEQLCS-RDQQWDEQQKVGASFVYSFSKTAVLAAYSKYVNNFKR-------------------------AKCAL 107 (925)
T ss_pred HHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhH-------------------------HHHHH
Confidence 444444443333 3455556666777777888888899999997766332 47788
Q ss_pred HHHHcHHHHHHHHH
Q psy480 96 EFINNFSAAMDVAR 109 (283)
Q Consensus 96 ~Y~~n~~~a~~~l~ 109 (283)
.|.. -+...+.++
T Consensus 108 ~~~~-rpaf~~Fl~ 120 (925)
T KOG3522|consen 108 RNKK-RPAFSKFLE 120 (925)
T ss_pred HHhc-chHHHHHHH
Confidence 8777 555555554
No 25
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=76.22 E-value=1.9 Score=33.32 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=22.9
Q ss_pred eEEEecceeecccccc-CC----cccceeccccCC
Q psy480 250 VLLRQDDVTQLVSALV-AR----SSGKLEGAGLNF 279 (283)
Q Consensus 250 ~LI~eG~l~~~~~~~~-~r----~~~~l~~a~~~~ 279 (283)
+||+||.|++++.... .| |||+|+.+....
T Consensus 1 ~~ikEG~L~K~~~k~~~~R~~FLFnD~LlY~~~~~ 35 (99)
T cd01220 1 EFIRQGCLLKLSKKGLQQRMFFLFSDLLLYTSKSP 35 (99)
T ss_pred CeeeEEEEEEEeCCCCceEEEEEccceEEEEEeec
Confidence 4899999999874333 35 999999887643
No 26
>KOG2099|consensus
Probab=57.47 E-value=2.2e+02 Score=29.26 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=38.2
Q ss_pred CCCChhhhhhcccchhhhHHHHHHHHHHh---------------cC-------CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy480 162 DRLSFFGLMVKPVQRFPQFILFLQDLLNH---------------TG-------HGHPDRMSLQLALTQLESLAELLNE 217 (283)
Q Consensus 162 ~~~~L~~lLi~PvQRi~RY~LLL~~Llk~---------------Tp-------~~~pd~~~L~~A~~~i~~v~~~in~ 217 (283)
-.++-++++..-|.||..|...|..++.- +| ..-|-|...+.-+..+..|+..||.
T Consensus 557 v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~e~~k~fvprtvm~GGKaapgY~mAK~Iiklit~V~dvVN~ 634 (843)
T KOG2099|consen 557 VKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKEEPAKAFVPRTVMIGGKAAPGYHMAKLIIKLITAVADVVNN 634 (843)
T ss_pred cccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCceEEEEcCccCchhHHHHHHHHHHHHHHHHhcC
Confidence 34556778888899999998866554431 12 2346677777777778888877764
No 27
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=49.35 E-value=8.4 Score=29.49 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=22.0
Q ss_pred eEEEecceeecccccc---CC----cccceecccc
Q psy480 250 VLLRQDDVTQLVSALV---AR----SSGKLEGAGL 277 (283)
Q Consensus 250 ~LI~eG~l~~~~~~~~---~r----~~~~l~~a~~ 277 (283)
+||+||.|++++.... .| |||+|+.+..
T Consensus 1 e~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~ 35 (101)
T cd01219 1 ELLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVP 35 (101)
T ss_pred CcccceEEEEEecCCCCceeEEEEEeCCEEEEEEc
Confidence 4899999999986543 35 8999998874
No 28
>COG1391 GlnE Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms]
Probab=32.53 E-value=4.6e+02 Score=28.42 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHH
Q psy480 177 FPQFILFLQDLLN 189 (283)
Q Consensus 177 i~RY~LLL~~Llk 189 (283)
|.|||.+|++|+.
T Consensus 583 lar~P~llDelld 595 (963)
T COG1391 583 LARYPILLDELLD 595 (963)
T ss_pred HHhCcHHHHHhcC
Confidence 5688888888887
No 29
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=31.87 E-value=31 Score=26.80 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=24.5
Q ss_pred eEEEecceeeccccccC---C-----cccceeccccCCCC
Q psy480 250 VLLRQDDVTQLVSALVA---R-----SSGKLEGAGLNFSG 281 (283)
Q Consensus 250 ~LI~eG~l~~~~~~~~~---r-----~~~~l~~a~~~~~~ 281 (283)
.+|++|++.++...... | +||.|+-|.++.++
T Consensus 1 ~~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~ 40 (100)
T cd01226 1 KVILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAG 40 (100)
T ss_pred CEEEcCcEEEechhhCCccceEEEEEeccEEEEEEecccc
Confidence 37899999998765543 2 89999999887543
No 30
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=28.21 E-value=2e+02 Score=22.10 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=32.9
Q ss_pred ccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy480 173 PVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAE 223 (283)
Q Consensus 173 PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E 223 (283)
-.|.|+--+--|...+......-..|+.|++-+..+++.-..++....+..
T Consensus 37 LF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~eAR~AlDalR~eH~ 87 (96)
T PF12210_consen 37 LFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKEARAALDALREEHR 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444444444444445688999999999988888887655443
No 31
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=26.20 E-value=94 Score=28.62 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=51.1
Q ss_pred ChHHHh--hhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcC-CCCchhhHHHHHHHhhh
Q psy480 12 SWEEEC--HQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSE-PWPIGTGIIRLVMCFKS 88 (283)
Q Consensus 12 ~~~~~~--~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~ 88 (283)
+|+.+- ..+.+.+++.-.++...+ +..- .-.-..-+||++++.+......+...+ .+.++..+..+..+|+.
T Consensus 79 pWd~~QTh~sl~~~l~EE~~El~eAI----~~~d-~~~l~EELGDlLfqVvf~Aria~~~~e~~F~~~dvl~~~~~Kfir 153 (277)
T PRK12334 79 PWESEQTHRSLARYLLEETYELLDAI----ESGD-RDELREELGDVLLQVLFHARIAEEAPEDPFDIDDVAATLVAKLVR 153 (277)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHH----HcCC-HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Confidence 677643 356666666554444432 2110 000124599999998777777666666 79999999999999987
Q ss_pred HHHHhHH
Q psy480 89 IVLEIYS 95 (283)
Q Consensus 89 ~~l~~Y~ 95 (283)
.+-.++.
T Consensus 154 RhPhVf~ 160 (277)
T PRK12334 154 RHPHVFA 160 (277)
T ss_pred HhHHhcc
Confidence 6666654
No 32
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=24.16 E-value=1.6e+02 Score=23.69 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcC-CCCCCHHHHHHHHHHHHH
Q psy480 181 ILFLQDLLNHTG-HGHPDRMSLQLALTQLES 210 (283)
Q Consensus 181 ~LLL~~Llk~Tp-~~~pd~~~L~~A~~~i~~ 210 (283)
.|.+..|..+.| ++||||....+.+...+.
T Consensus 84 ~L~~~~LA~f~P~~e~p~y~~~~~e~~~Yr~ 114 (131)
T PF09779_consen 84 HLKINQLASFLPDPEDPEYANYEEELPEYRR 114 (131)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Confidence 467788888888 578999866666555543
No 33
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=21.58 E-value=66 Score=21.61 Aligned_cols=18 Identities=22% Similarity=0.704 Sum_probs=15.9
Q ss_pred ccchhhhHHHHHHHHHHh
Q psy480 173 PVQRFPQFILFLQDLLNH 190 (283)
Q Consensus 173 PvQRi~RY~LLL~~Llk~ 190 (283)
-++|+|.|...|+.|...
T Consensus 7 ti~RL~~Y~r~L~~l~~~ 24 (50)
T PF06971_consen 7 TIRRLPLYLRYLEQLKEE 24 (50)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 479999999999999874
Done!