Query psy480
Match_columns 283
No_of_seqs 134 out of 1591
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:04:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xcg_A PDZ-rhogef, RHO guanine 100.0 5.1E-33 1.7E-37 260.6 21.4 212 12-276 57-284 (368)
2 2dfk_A Collybistin II; DH doma 100.0 1.4E-32 4.6E-37 261.4 21.4 205 12-277 78-290 (402)
3 3t06_A PDZ-rhogef, RHO guanine 100.0 4.1E-32 1.4E-36 258.6 22.7 213 11-276 98-326 (418)
4 3mpx_A FYVE, rhogef and PH dom 100.0 5.2E-33 1.8E-37 265.8 16.2 205 11-277 66-275 (434)
5 2pz1_A RHO guanine nucleotide 100.0 1E-31 3.4E-36 259.5 20.4 205 12-277 155-367 (466)
6 3p6a_A RHO guanine nucleotide 100.0 1.6E-31 5.3E-36 251.1 20.6 212 11-276 62-290 (377)
7 2z0q_A XPLN, RHO guanine nucle 100.0 2.2E-32 7.4E-37 254.5 13.7 202 12-277 55-260 (346)
8 2vrw_B P95VAV, VAV1, proto-onc 100.0 3.1E-31 1.1E-35 251.9 18.6 200 13-276 60-266 (406)
9 1txd_A RHO guanine nucleotide 100.0 8.2E-31 2.8E-35 247.2 20.5 210 12-276 60-288 (385)
10 3odw_A RHO guanine nucleotide 100.0 2.7E-30 9.4E-35 254.0 20.8 212 11-276 215-443 (536)
11 1dbh_A Protein (human SOS 1); 100.0 6E-31 2E-35 245.4 11.1 207 12-278 40-277 (354)
12 3ky9_A Proto-oncogene VAV; cal 100.0 1.1E-29 3.8E-34 252.1 15.4 199 14-276 233-438 (587)
13 3jv3_A Intersectin-1; SH3 doma 100.0 1.5E-28 5.3E-33 222.0 16.3 164 11-233 117-283 (283)
14 1foe_A T-lymphoma invasion and 100.0 6.1E-28 2.1E-32 227.0 16.7 188 12-261 47-248 (377)
15 1by1_A Protein (PIX); RHO-GTPa 100.0 2.4E-28 8.1E-33 212.5 12.4 151 13-225 50-200 (209)
16 3jzy_A Intersectin 2; C2 domai 100.0 4.5E-30 1.5E-34 249.5 0.0 204 12-277 63-282 (510)
17 3ksy_A SOS-1, SON of sevenless 99.9 7.1E-27 2.4E-31 245.2 8.0 207 12-278 237-474 (1049)
18 1kz7_A Guanine nucleotide exch 99.9 1.8E-25 6E-30 208.9 16.1 181 15-278 56-255 (353)
19 2rgn_B RHOA/RAC/CDC42 exchange 99.9 5E-25 1.7E-29 205.9 15.9 181 15-278 53-246 (354)
20 1nty_A Triple functional domai 99.9 6.7E-24 2.3E-28 194.6 15.1 177 15-277 52-238 (311)
21 2lg1_A A-kinase anchor protein 98.5 5.6E-09 1.9E-13 88.9 -2.8 84 190-275 2-101 (185)
22 1zc3_B Exocyst complex protein 89.2 0.15 5.2E-06 39.2 1.9 34 245-278 2-43 (113)
23 4gou_A EHRGS-rhogef; RGS domai 85.1 13 0.00046 32.9 12.1 107 90-218 267-373 (518)
24 3mpx_A FYVE, rhogef and PH dom 31.5 62 0.0021 29.5 5.5 104 14-157 72-184 (434)
25 3f1i_H Hepatocyte growth facto 24.0 1.9E+02 0.0067 21.2 5.8 33 196-230 62-94 (98)
26 3p6a_A RHO guanine nucleotide 22.2 1.4E+02 0.0047 26.5 5.9 27 15-41 69-95 (377)
No 1
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=100.00 E-value=5.1e-33 Score=260.55 Aligned_cols=212 Identities=17% Similarity=0.233 Sum_probs=182.0
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHH
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVL 91 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l 91 (283)
..++++..+|.++-+++ ++|..|+..|+++..+|+....|||+|++++.... ...++
T Consensus 57 l~~~~~~~iF~ni~~i~-~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~~~----------------------~~~~~ 113 (368)
T 1xcg_A 57 MPREELARLFPNLPELI-EIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPA----------------------REELQ 113 (368)
T ss_dssp SCHHHHHHHSSSHHHHH-HHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHHH----------------------HHHHH
T ss_pred CCHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHccchh----------------------HHHHH
Confidence 34678899999987775 89999999999999999888999999999765310 01256
Q ss_pred HhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhh
Q psy480 92 EIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMV 171 (283)
Q Consensus 92 ~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi 171 (283)
++|..||.||+.|...+.++.++|+.|+.|++.|+..+ .|++++|.+||+
T Consensus 114 ~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~------------------------------~~~~l~L~~~Li 163 (368)
T 1xcg_A 114 QVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHP------------------------------QCRRLQLRDLII 163 (368)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSG------------------------------GGTTCCHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhCh------------------------------hhccCChHHHhh
Confidence 99999999999999999999889999999999987653 578999999999
Q ss_pred cccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CC
Q psy480 172 KPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKL----------ST 241 (283)
Q Consensus 172 ~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~----------~~ 241 (283)
+|||||+||+|||++|+|+||++||||..|..|++.|+.++..||+.+++.|+..++.+++++|.++. ..
T Consensus 164 ~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~pl~~~~ 243 (368)
T 1xcg_A 164 SEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEF 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHSCSCTTTGGG
T ss_pred hHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhcccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998631 01
Q ss_pred ccccccCceEEEecceeeccccccCC------cccceeccc
Q psy480 242 RPLADVHRVLLRQDDVTQLVSALVAR------SSGKLEGAG 276 (283)
Q Consensus 242 ~~L~~~~R~LI~eG~l~~~~~~~~~r------~~~~l~~a~ 276 (283)
..|..++|+||++|.+++..+....+ |+|.|+.+.
T Consensus 244 ~~l~~~~R~li~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k 284 (368)
T 1xcg_A 244 KSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQ 284 (368)
T ss_dssp GGCCGGGSCEEEEEEEEECCSSSCCCEEEEEEESSEEEEEE
T ss_pred hhcccccceEEeecceEeeecCCCeeEEEEEcccccHHHhh
Confidence 24677899999999998654332222 899888775
No 2
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=1.4e-32 Score=261.39 Aligned_cols=205 Identities=20% Similarity=0.215 Sum_probs=179.5
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCC-CchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHH
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRD-HKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIV 90 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~-~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 90 (283)
..++++..+|.++-+++ ++|..|+..|++++..|.+. ..|||+|++++..
T Consensus 78 l~~~~~~~iF~ni~~I~-~~h~~fL~~Le~~~~~~~~~~~~ig~ifl~~~~~---------------------------- 128 (402)
T 2dfk_A 78 FSDEQLKVIFGNIEDIY-RFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDG---------------------------- 128 (402)
T ss_dssp CCHHHHHHHHTTHHHHH-HHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTTTG----------------------------
T ss_pred CCHHHHHHHHhcHHHHH-HHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhh----------------------------
Confidence 44678999999987775 89999999999999888654 7899999997543
Q ss_pred HHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhh
Q psy480 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLM 170 (283)
Q Consensus 91 l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lL 170 (283)
+++|..||.||+.|...+.++.+ ++.|..|++.|+..+ .+.+++|.+||
T Consensus 129 f~~Y~~Y~~n~~~a~~~l~~~~~-~~~f~~fl~~~~~~~------------------------------~~~~l~L~s~L 177 (402)
T 2dfk_A 129 FWIYSEYCNNHLDACMELSKLMK-DSRYQHFFEACRLLQ------------------------------QMIDIAIDGFL 177 (402)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHT------------------------------TCCSCCHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHc-ChHHHHHHHHHHhhh------------------------------hcccCCHHHHH
Confidence 38999999999999999988665 789999999986532 46789999999
Q ss_pred hcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCce
Q psy480 171 VKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRV 250 (283)
Q Consensus 171 i~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~ 250 (283)
++|||||+||+|||++|+|+||++||||..|..|++.|+.++..||+.+++.|+..++.+++.+|.|+.. .+++.++|+
T Consensus 178 i~PvQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~-~~l~~~~r~ 256 (402)
T 2dfk_A 178 LTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEG-DDILDRSSE 256 (402)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSBTCCS-SCGGGTCCC
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854 568999999
Q ss_pred EEEecceeecccc-ccC--C----cccceecccc
Q psy480 251 LLRQDDVTQLVSA-LVA--R----SSGKLEGAGL 277 (283)
Q Consensus 251 LI~eG~l~~~~~~-~~~--r----~~~~l~~a~~ 277 (283)
||++|.++++... ... | |+|.|+.+.-
T Consensus 257 Li~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~ 290 (402)
T 2dfk_A 257 LIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKK 290 (402)
T ss_dssp EEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEE
T ss_pred eEEeceEEEEeccCCceEEEEEEeeCCEEEEEEe
Confidence 9999999988652 111 2 8999987764
No 3
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=258.58 Aligned_cols=213 Identities=16% Similarity=0.224 Sum_probs=184.6
Q ss_pred CChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHH
Q psy480 11 TSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIV 90 (283)
Q Consensus 11 ~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 90 (283)
...++++..+|.++-+++ ++|..|+..|+++..+|.....|||+|+++++.. +...+
T Consensus 98 ~l~~~~~~~iF~ni~~I~-~~h~~fl~~L~~~~~~~~~~~~ig~ifl~~~~~~----------------------~~~~~ 154 (418)
T 3t06_A 98 LMPREELARLFPNLPELI-EIHNSWCEAMKKLREEGPIIKEISDLMLARFDGP----------------------AREEL 154 (418)
T ss_dssp SSCHHHHHHHSSSHHHHH-HHHHHHHHHHHHHGGGCSSCCCCHHHHHHHHSTH----------------------HHHHH
T ss_pred CCCHHHHHHHHccHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHhcchh----------------------hhHHH
Confidence 345678889999987775 8999999999999999988899999999976541 01124
Q ss_pred HHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhh
Q psy480 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLM 170 (283)
Q Consensus 91 l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lL 170 (283)
+++|..||.||+.|...+..+.++|+.|+.|++.++..+ .|++++|.+||
T Consensus 155 ~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~------------------------------~~~~l~L~s~L 204 (418)
T 3t06_A 155 QQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHP------------------------------QCRRLQLRDLI 204 (418)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSG------------------------------GGTTCCHHHHT
T ss_pred hhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHhCc------------------------------ccccCCHHHHH
Confidence 689999999999999999999899999999999997653 57899999999
Q ss_pred hcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------
Q psy480 171 VKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLS---------- 240 (283)
Q Consensus 171 i~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~---------- 240 (283)
++|||||+||+|||++|+|+||++|+||..|++|++.++.++..||+.+++.|+..++.+++++|.++..
T Consensus 205 i~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~~~~~~ 284 (418)
T 3t06_A 205 ISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAE 284 (418)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCTTSSCSCTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987521
Q ss_pred CccccccCceEEEecceeeccccccCC------cccceeccc
Q psy480 241 TRPLADVHRVLLRQDDVTQLVSALVAR------SSGKLEGAG 276 (283)
Q Consensus 241 ~~~L~~~~R~LI~eG~l~~~~~~~~~r------~~~~l~~a~ 276 (283)
...+..++|+||++|.+++.......+ |+|.|+.+.
T Consensus 285 ~~~l~~~~r~li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k 326 (418)
T 3t06_A 285 FKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQ 326 (418)
T ss_dssp TSSCCGGGSCEEEEEEEEECCBTTBCCEEEEEEESSEEEEEE
T ss_pred hcccccccceeEEeceEEEEeCCCCeEEEEEEecCCEEEEEE
Confidence 134667899999999999776443332 899998775
No 4
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=265.83 Aligned_cols=205 Identities=21% Similarity=0.244 Sum_probs=179.7
Q ss_pred CChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHH
Q psy480 11 TSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIV 90 (283)
Q Consensus 11 ~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 90 (283)
...++++..+|.++-+++ ++|..|+..|++++.+|+....|||+|+++...
T Consensus 66 ~l~~~~~~~iF~ni~~I~-~~h~~fL~~L~~~~~~~~~~~~ig~ifl~~~~~---------------------------- 116 (434)
T 3mpx_A 66 TLAREELRQGLSELPAIH-DLHQGILEELEERLSNWESQQKVADVFLAREQG---------------------------- 116 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTCCCCTHHHHTTTTT----------------------------
T ss_pred CCCHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHhccCcccHHHHHHHhhHH----------------------------
Confidence 445678888998877775 889999999999999999999999999997543
Q ss_pred HHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhh
Q psy480 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLM 170 (283)
Q Consensus 91 l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lL 170 (283)
+++|..||.||+.|...+.++.++|+.|..|++.++..+ .+++++|.+||
T Consensus 117 ~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~------------------------------~~~~l~L~s~L 166 (434)
T 3mpx_A 117 FDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSV------------------------------QGGSQTAKHRL 166 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------------------------------CHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHcCc------------------------------ccCCCCHHHHH
Confidence 589999999999999999999999999999999987653 56789999999
Q ss_pred hcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCce
Q psy480 171 VKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRV 250 (283)
Q Consensus 171 i~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~ 250 (283)
++|||||+||+|||++|+|+||++||||..+..|++.|+.++..+|+.+++.|+..++.+++++|.|+ .+|+.++|.
T Consensus 167 i~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~l~~~i~~~---~~l~~~~r~ 243 (434)
T 3mpx_A 167 LRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQ---GDLLQPGRE 243 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHEETC---CCCCCTTCC
T ss_pred hhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---cccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 469999999
Q ss_pred EEEecceeecccccc-CC----cccceecccc
Q psy480 251 LLRQDDVTQLVSALV-AR----SSGKLEGAGL 277 (283)
Q Consensus 251 LI~eG~l~~~~~~~~-~r----~~~~l~~a~~ 277 (283)
||++|.++++..... .| |+|.|+.+..
T Consensus 244 li~~g~l~~~~~~~~~~r~~fLF~d~Ll~~k~ 275 (434)
T 3mpx_A 244 FLKEGTLMKVTGKNRRPRHLFLMNDVLLYTYP 275 (434)
T ss_dssp EEECCEEEEEETTEEEEEEEEEESSEEEEEEE
T ss_pred eEecceEEEEeCCCceEEEEEEECCEEEEEEe
Confidence 999999988764321 23 8999988764
No 5
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.98 E-value=1e-31 Score=259.54 Aligned_cols=205 Identities=21% Similarity=0.238 Sum_probs=178.5
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCC-CchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHH
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRD-HKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIV 90 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~-~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 90 (283)
..++++..+|.++-+++ ++|..|+..|++++..|.+. ..|||+|+++...
T Consensus 155 l~~~~~~~iF~ni~~I~-~~h~~fL~~Le~~~~~~~~~~~~ig~~fl~~~~~---------------------------- 205 (466)
T 2pz1_A 155 FSEEQLRTIFGNIEDIY-RCQKAFVKALEQRFNRERPHLSELGACFLEHQAD---------------------------- 205 (466)
T ss_dssp CCHHHHHHHHTTHHHHH-HHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTHHH----------------------------
T ss_pred CCHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHccCCCccchHHHHHHHhhHH----------------------------
Confidence 45678999999987775 89999999999999887654 7899999986532
Q ss_pred HHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhh
Q psy480 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLM 170 (283)
Q Consensus 91 l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lL 170 (283)
+++|..||.||+.|...+.++.+ ++.|..|++.|+..+ .+.+++|.+||
T Consensus 206 f~~Y~~Y~~n~~~a~~~l~~~~~-~~~f~~f~~~~~~~~------------------------------~~~~l~L~~~L 254 (466)
T 2pz1_A 206 FQIYSEYCNNHPNACVELSRLTK-LSKYVYFFEACRLLQ------------------------------KMIDISLDGFL 254 (466)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH------------------------------TCCSCCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHh-ccHHHHHHHHHHHhh------------------------------hhccCCHHHHh
Confidence 48999999999999999988765 678999999986422 46789999999
Q ss_pred hcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCce
Q psy480 171 VKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRV 250 (283)
Q Consensus 171 i~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~ 250 (283)
++|||||+||+|||++|+|+||++||||..|..|++.|+.++..||+.+++.|+..++.+++.+|.|+.. .+|+.++|+
T Consensus 255 i~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~-~~l~~~~r~ 333 (466)
T 2pz1_A 255 LTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEG-EDLLVRSSE 333 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTCCS-SCHHHHCSC
T ss_pred hhHHHHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854 568899999
Q ss_pred EEEecceeeccccc-c--CC----cccceecccc
Q psy480 251 LLRQDDVTQLVSAL-V--AR----SSGKLEGAGL 277 (283)
Q Consensus 251 LI~eG~l~~~~~~~-~--~r----~~~~l~~a~~ 277 (283)
||++|.++++.... . .| |+|.|+.+.-
T Consensus 334 li~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~ 367 (466)
T 2pz1_A 334 LIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKK 367 (466)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEETTEEEEEEE
T ss_pred eEEeeeEEEEecCCCCeeEEEEEEECCEEEEEEe
Confidence 99999999886421 1 22 8999887764
No 6
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.98 E-value=1.6e-31 Score=251.06 Aligned_cols=212 Identities=20% Similarity=0.205 Sum_probs=178.4
Q ss_pred CChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCC-CCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhH
Q psy480 11 TSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWD-RDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSI 89 (283)
Q Consensus 11 ~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~-~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 89 (283)
...++++..+|.++-+++ ++|..|+..|+++..+|+ ....|||+|++++++.. .+.
T Consensus 62 ~l~~~~~~~iF~ni~~I~-~~h~~fl~~L~~~~~~~~~~~~~ig~~fl~~~~~~~----------------------~~~ 118 (377)
T 3p6a_A 62 FFPLEELQNIFPSLDELI-EVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE----------------------GSW 118 (377)
T ss_dssp SSCHHHHHHHSTTHHHHH-HHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHSHHH----------------------HHH
T ss_pred CCCHHHHHHHHccHHHHH-HHHHHHHHHHHHHHhccCCCCCcHHHHHHHHhcchh----------------------hHH
Confidence 345678899999887775 899999999999887664 46799999999775411 012
Q ss_pred HHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhh
Q psy480 90 VLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGL 169 (283)
Q Consensus 90 ~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (283)
|+++|..||.||+.|...+.++.++|+.|..|++.++..+ .|++++|.+|
T Consensus 119 ~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~------------------------------~~~~l~L~~~ 168 (377)
T 3p6a_A 119 FQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRP------------------------------RCRRLQLKDM 168 (377)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTSG------------------------------GGTTCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCc------------------------------ccCCCCHHHH
Confidence 4689999999999999999999999999999999997653 6789999999
Q ss_pred hhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------
Q psy480 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKL---------- 239 (283)
Q Consensus 170 Li~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~---------- 239 (283)
|++|||||+||+|||++|+|+||+ ||||..+..|++.++.++..||+.+++.|+..++.+++++|.+..
T Consensus 169 Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~iq~~l~~~~~~~~~~~~~~ 247 (377)
T 3p6a_A 169 IPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLS 247 (377)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCGGGS
T ss_pred HHHHHHHhhhHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchhh
Confidence 999999999999999999999998 899999999999999999999999999999999999999997520
Q ss_pred CCccccccCceEEEecceeeccccccC--C----cccceeccc
Q psy480 240 STRPLADVHRVLLRQDDVTQLVSALVA--R----SSGKLEGAG 276 (283)
Q Consensus 240 ~~~~L~~~~R~LI~eG~l~~~~~~~~~--r----~~~~l~~a~ 276 (283)
....+..++|+||++|.+......... | |+|.|+.+.
T Consensus 248 ~~~~l~~~~r~li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k 290 (377)
T 3p6a_A 248 EFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQ 290 (377)
T ss_dssp SSTTCCCTTSCEEEEEEEEEESSSSCEEEEEEEEESSEEEEEE
T ss_pred hhcccccccceEEEECCcEEEecCCCeEEEEEEeeCCEEEEEE
Confidence 013455688999999999776543322 2 899988775
No 7
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.98 E-value=2.2e-32 Score=254.46 Aligned_cols=202 Identities=20% Similarity=0.256 Sum_probs=163.8
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHH
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVL 91 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l 91 (283)
..++++..+|.++-+++ ++|..|+..|+++...|+....|||+|+++++. +
T Consensus 55 l~~~~~~~iF~ni~~i~-~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~----------------------------~ 105 (346)
T 2z0q_A 55 MTEQELNQIFGTLDSLI-PLHEELLSQLRDVRKPDGSTEHVGPILVGWLPC----------------------------L 105 (346)
T ss_dssp SCHHHHHHHHTTHHHHH-HHHHHHHHHHHHHCCTTSCCSCCHHHHHHHGGG----------------------------G
T ss_pred CCHHHHHHHhccHHHHH-HHHHHHHHHHHHHhccCCccchHHHHHHHHhhH----------------------------H
Confidence 34678889999877774 899999999999999999899999999997643 4
Q ss_pred HhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhh
Q psy480 92 EIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMV 171 (283)
Q Consensus 92 ~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi 171 (283)
++|..||.||+.|...+++ .++|+.|++|++.|+..+ .+++++|.+||+
T Consensus 106 ~~Y~~Y~~n~~~a~~~l~~-~~~~~~f~~fl~~~~~~~------------------------------~~~~l~L~~~L~ 154 (346)
T 2z0q_A 106 SSYDSYCSNQVAAKALLDH-KKQDHRVQDFLQRCLESP------------------------------FSRKLDLWNFLD 154 (346)
T ss_dssp GHHHHHHHHHHHHHHHHHH-HTTCHHHHCC-------------------------------------------CTTTGGG
T ss_pred HHHHHHHHCHHHHHHHHHH-hhcCHHHHHHHHHHHhCc------------------------------cCCCCCHHHHHH
Confidence 8999999999999999988 578999999999986543 567899999999
Q ss_pred cccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceE
Q psy480 172 KPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVL 251 (283)
Q Consensus 172 ~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~L 251 (283)
+|||||+||+|||++|+|+||++||||..|..|++.|+.++..||+.+++.|+..++..++...+|+. .+++.++|.|
T Consensus 155 ~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~~~~~~e~~~~~~~l~~~~~~~~--~~l~~~~r~l 232 (346)
T 2z0q_A 155 IPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQK--DSLIDSSRVL 232 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCSTTCC--CHHHHTCCCE
T ss_pred HHHHHHhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CccccCCeEE
Confidence 99999999999999999999999999999999999999999999999999999887766554444542 4688999999
Q ss_pred EEecceeeccccccCC----cccceecccc
Q psy480 252 LRQDDVTQLVSALVAR----SSGKLEGAGL 277 (283)
Q Consensus 252 I~eG~l~~~~~~~~~r----~~~~l~~a~~ 277 (283)
|++|.+.... + ..| |+|.|+.++-
T Consensus 233 i~~G~l~~~~-~-~~~~~fLF~d~Ll~~k~ 260 (346)
T 2z0q_A 233 CCHGELKNNR-G-VKLHVFLFQEVLVITRA 260 (346)
T ss_dssp EEEEEEEETT-S-CEEEEEEESSEEEEEEE
T ss_pred EEeceeEECC-C-cEEEEEECCCcEEEEEE
Confidence 9999998532 1 223 8999888764
No 8
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.97 E-value=3.1e-31 Score=251.87 Aligned_cols=200 Identities=18% Similarity=0.235 Sum_probs=173.9
Q ss_pred hHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHH
Q psy480 13 WEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLE 92 (283)
Q Consensus 13 ~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~ 92 (283)
.++++..+|.++-+++ ++|..|+..|++++.+| ....|||+|+++... ++
T Consensus 60 ~~~~~~~iF~ni~~i~-~~h~~fl~~L~~~~~~~-~~~~ig~~f~~~~~~----------------------------~~ 109 (406)
T 2vrw_B 60 KPQDMETIFVNIEELF-SVHTHFLKELKDALAGP-GATTLYQVFIKYKER----------------------------FL 109 (406)
T ss_dssp CHHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHSG-GGTTHHHHHHHHTTG----------------------------GG
T ss_pred CHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHH----------------------------HH
Confidence 4678888999877775 88899999999999888 467899999986543 48
Q ss_pred hHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhc
Q psy480 93 IYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVK 172 (283)
Q Consensus 93 ~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~ 172 (283)
+|..||.||+.|...++++.+.|+.|++|++.++..+ .+++++|.+||++
T Consensus 110 ~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~------------------------------~~~~l~L~~~Li~ 159 (406)
T 2vrw_B 110 VYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRA------------------------------NNGRFTLRDLLMV 159 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH------------------------------HTTSCCHHHHTTH
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhcc------------------------------ccCCcchHHHhhh
Confidence 9999999999999999999889999999999986532 4678999999999
Q ss_pred ccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceEE
Q psy480 173 PVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLL 252 (283)
Q Consensus 173 PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~LI 252 (283)
|||||+||+|||++|+|+| ++||||..|..|++.|+.++..||+.+++.|+..++.+++.+|+|+.. +|..++| ++
T Consensus 160 PvQRi~rY~LLL~~llk~t-~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~--~l~~~gr-li 235 (406)
T 2vrw_B 160 PMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQ--SLANYGR-PK 235 (406)
T ss_dssp HHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEESCSS--CGGGGCS-EE
T ss_pred HHHHHhhHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cccccCc-cc
Confidence 9999999999999999999 899999999999999999999999999999999999999999999853 4777777 89
Q ss_pred EecceeeccccccC---C----cccceeccc
Q psy480 253 RQDDVTQLVSALVA---R----SSGKLEGAG 276 (283)
Q Consensus 253 ~eG~l~~~~~~~~~---r----~~~~l~~a~ 276 (283)
++|.+......... | |+|.|+.++
T Consensus 236 ~~G~l~~~~~~~~~~~~~~~fLF~d~Ll~~k 266 (406)
T 2vrw_B 236 IDGELKITSVERRSKTDRYAFLLDKALLICK 266 (406)
T ss_dssp EEEEEEEECSSCCSCEEEEEEEESSEEEEEE
T ss_pred ccccEEEEecCCCccceEEEEecCCEEEEEE
Confidence 99999876432222 2 888887764
No 9
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.97 E-value=8.2e-31 Score=247.24 Aligned_cols=210 Identities=16% Similarity=0.183 Sum_probs=173.6
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhc---CCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhh
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVAN---WDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKS 88 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~---~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 88 (283)
..++++..+|.++-+++ ++| .|+..|++++.. |+....|||+|+++++... ..
T Consensus 60 l~~~~~~~iF~ni~~I~-~~h-~fL~~l~~~~~~~~~~~~~~~ig~~fl~~~~~~~----------------------~~ 115 (385)
T 1txd_A 60 LSPSELRKIFSNLEDIL-QLH-IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPG----------------------EE 115 (385)
T ss_dssp SCHHHHHHHHTTHHHHH-HHH-HHHHHHHHHHHTTCTTCCCCCCHHHHHHHHSTHH----------------------HH
T ss_pred CCHHHHHHHhcCHHHHH-HHH-HHHHHHHHHHHHhhcCCCcccHHHHHHHHccchh----------------------HH
Confidence 34668888998877775 788 788888887643 4456789999999765310 01
Q ss_pred HHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhh
Q psy480 89 IVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFG 168 (283)
Q Consensus 89 ~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 168 (283)
.|+++|..||.||+.|...+.++.++|+.|++|++.|+..+ .|++++|.+
T Consensus 116 ~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~------------------------------~~~~l~L~~ 165 (385)
T 1txd_A 116 KLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNP------------------------------LCRRLQLKD 165 (385)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSG------------------------------GGTTCCHHH
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHHhCc------------------------------cccCCChHH
Confidence 25699999999999999999999999999999999987653 578999999
Q ss_pred hhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----C---
Q psy480 169 LMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLS----T--- 241 (283)
Q Consensus 169 lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~----~--- 241 (283)
||++|||||+||+|||++|+|+||++ +||..|.+|++.|+.++..||+.++++|+..++.+++++|++..- .
T Consensus 166 ~Li~PvQRi~rY~LLL~~llk~t~~~-~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~p~~ 244 (385)
T 1txd_A 166 IIPTQMQRLTKYPLLLDNIAKYTEWP-TEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNV 244 (385)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC-------C
T ss_pred HhhhHHhHhhhHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhcccccccch
Confidence 99999999999999999999999996 899999999999999999999999999999999999999985310 0
Q ss_pred ---ccccccCceEEEecceeeccccccC--C----cccceeccc
Q psy480 242 ---RPLADVHRVLLRQDDVTQLVSALVA--R----SSGKLEGAG 276 (283)
Q Consensus 242 ---~~L~~~~R~LI~eG~l~~~~~~~~~--r----~~~~l~~a~ 276 (283)
..+..++|+||++|.++........ | |+|.|+.+.
T Consensus 245 ~~~~~l~~~~R~li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k 288 (385)
T 1txd_A 245 EELRNLDLTKRKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQ 288 (385)
T ss_dssp HHHHTCCGGGSCEEEEEEEEEESSSSCBCCEEEEEESSEEEEEE
T ss_pred hhhhhcccccceEEEECcEEEEcCCCCeEEEEEEecCCeeEEEE
Confidence 1356689999999999865432222 2 889888765
No 10
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.97 E-value=2.7e-30 Score=254.00 Aligned_cols=212 Identities=20% Similarity=0.201 Sum_probs=177.4
Q ss_pred CChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcC-CCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhH
Q psy480 11 TSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANW-DRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSI 89 (283)
Q Consensus 11 ~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~-~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 89 (283)
...++++..+|.++-+++ ++|..|+..|+++..+| .....|||+|++++++.. ...
T Consensus 215 ~l~~~~~~~IF~nie~I~-~~h~~fL~~L~~~~~~~~~~~~~Igdifl~~~~~~~----------------------~~~ 271 (536)
T 3odw_A 215 FFPLEELQNIFPSLDELI-EVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE----------------------GSW 271 (536)
T ss_dssp SSCHHHHHHHSTTHHHHH-HHHHHHHHHHHHHHHTC---CCCCHHHHHHHHSHHH----------------------HHH
T ss_pred CCCHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhcCcccccHHHHHHHHcchhh----------------------hHH
Confidence 345678899999887775 89999999999988765 446899999999775411 012
Q ss_pred HHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhh
Q psy480 90 VLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGL 169 (283)
Q Consensus 90 ~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (283)
|+++|..||.||+.|...+.+++++|+.|..|++.++..+ .|++++|.+|
T Consensus 272 f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~------------------------------~~~~l~L~s~ 321 (536)
T 3odw_A 272 FQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRP------------------------------RCRRLQLKDM 321 (536)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSG------------------------------GGTTCCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhhCc------------------------------ccccCCHHHH
Confidence 4689999999999999999999999999999999987653 5789999999
Q ss_pred hhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------
Q psy480 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKL---------- 239 (283)
Q Consensus 170 Li~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~---------- 239 (283)
|++|||||+||+|||++|+|+||. |+||..|.+|+..|+.++..||+.+++.|+..++.+++++|.+..
T Consensus 322 Li~PvQRi~rY~LLL~~LlK~T~~-~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~kL~~iq~~L~~~~~~~~~~~~i~ 400 (536)
T 3odw_A 322 IPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLS 400 (536)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECTTTTTC---CCT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 999999999999999999999987 899999999999999999999999999999999999999997531
Q ss_pred CCccccccCceEEEecceeeccccccCC------cccceeccc
Q psy480 240 STRPLADVHRVLLRQDDVTQLVSALVAR------SSGKLEGAG 276 (283)
Q Consensus 240 ~~~~L~~~~R~LI~eG~l~~~~~~~~~r------~~~~l~~a~ 276 (283)
....+..++|+||++|.+.........+ |+|.|+.+.
T Consensus 401 ~~~~ldl~~R~LI~eG~l~~~~~~~k~~~r~~fLF~D~LL~~k 443 (536)
T 3odw_A 401 EFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQ 443 (536)
T ss_dssp TSSSCCCTTSCEEEEEEEEEESCC---CEEEEEEESSEEEEEE
T ss_pred hhcccccccceeeeecceEEEecCCCeeEEEEEEcCCEEEEEE
Confidence 0123555799999999998776433322 899988775
No 11
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.97 E-value=6e-31 Score=245.44 Aligned_cols=207 Identities=15% Similarity=0.200 Sum_probs=167.5
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcC---CCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhh
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANW---DRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKS 88 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~---~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 88 (283)
..++++..+|.++-+++ ++|..|+..|++++..| .+...|||+|+++....
T Consensus 40 l~~~~~~~iF~ni~~I~-~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~------------------------- 93 (354)
T 1dbh_A 40 FSANDVENIFSRIVDIH-ELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEEL------------------------- 93 (354)
T ss_dssp CCHHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHTCCTTSSSCCCHHHHHHHHHTT-------------------------
T ss_pred CCHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHhccccCCccchHHHHHHHHhHHh-------------------------
Confidence 45778999999987775 89999999999988765 44478999999865421
Q ss_pred HHHHhHHHHHHcH--HHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCCh
Q psy480 89 IVLEIYSEFINNF--SAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSF 166 (283)
Q Consensus 89 ~~l~~Y~~Y~~n~--~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 166 (283)
++++|..||.|| +.|...+.++ .+++.|..|++++.... +.+++++|
T Consensus 94 -~f~~Y~~Y~~n~~~~~a~~~l~~~-~~~~~f~~~l~~~~~~~-----------------------------~~~~~~~L 142 (354)
T 1dbh_A 94 -AFDPYESYARDILRPGFHDRFLSQ-LSKPGAALYLQSIGEGF-----------------------------KEAVQYVL 142 (354)
T ss_dssp -TTHHHHHHHHHHTSTTHHHHHHHH-HHSTTHHHHHHHHCTTH-----------------------------HHHHHHTH
T ss_pred -hhhHHHHHHHhccchHHHHHHHHH-hcChHHHHHHHHHHHHH-----------------------------HHHhcCCH
Confidence 248999999999 6667999886 68999999998853211 13467899
Q ss_pred hhhhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH
Q psy480 167 FGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNE----------------------RKREAEQ 224 (283)
Q Consensus 167 ~~lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~----------------------~~~~~E~ 224 (283)
.+||++||||||||+|||++|+|+||. ||||..|.+|++.|+.++..||+ .+++.|+
T Consensus 143 ~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~r~~~e~~~~~~~ne~~r~~e~ 221 (354)
T 1dbh_A 143 PRLLLAPVYHCLHYFELLKQLEEKSED-QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLA 221 (354)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-------------C
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhHHH
Confidence 999999999999999999999999985 99999999999999999998876 6677788
Q ss_pred HHHHHHHHHHhcCCCCCccccccCceEEEecceeeccccccCC----cccceeccccC
Q psy480 225 TQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVAR----SSGKLEGAGLN 278 (283)
Q Consensus 225 ~~~l~~l~~~i~g~~~~~~L~~~~R~LI~eG~l~~~~~~~~~r----~~~~l~~a~~~ 278 (283)
..++.+++++|.|+.. .+|..++|+||++|.+.+++ ....| |+|+|+.+.-.
T Consensus 222 ~~~l~~lq~~i~~~~~-~~l~~~~r~li~eG~l~~~g-~~~~~~~fLF~d~Ll~~k~~ 277 (354)
T 1dbh_A 222 IKKMNEIQKNIDGWEG-KDIGQCCNEFIMEGTLTRVG-AKHERHIFLFDGLMICCKSN 277 (354)
T ss_dssp THHHHHHHTTEESCCS-SCGGGTCCCEEEEEEEEETT-CSSCEEEEEESSEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCC-cccccccceEEEEeeEEEEe-cCceEEEEEeCCEEEEEecC
Confidence 8999999999999864 57999999999999999883 22223 99999887754
No 12
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.96 E-value=1.1e-29 Score=252.08 Aligned_cols=199 Identities=17% Similarity=0.218 Sum_probs=172.6
Q ss_pred HHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHh
Q psy480 14 EEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEI 93 (283)
Q Consensus 14 ~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~ 93 (283)
+++...+|.++-+++ ++|..|+..|++++.+| ....|||+|+++... +++
T Consensus 233 ~~~~~~iF~ni~~I~-~~h~~fL~~L~~~~~~~-~~~~ig~if~~~~~~----------------------------f~~ 282 (587)
T 3ky9_A 233 PQDIEIIFINIEDLL-RVHTHFLKEMKEALGTP-GAANLYQVFIKYKER----------------------------FLV 282 (587)
T ss_dssp TTTSHHHHHHHHHHH-HHHHHHHHHHHHHHHSS-TTCSHHHHHHHTTTG----------------------------GGH
T ss_pred HHHHHHHHhcHHHHH-HHHHHHHHHHHHHHhcc-CccHHHHHHHHHHHh----------------------------cch
Confidence 456777887766664 78888999999999988 578899999986543 489
Q ss_pred HHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcc
Q psy480 94 YSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKP 173 (283)
Q Consensus 94 Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~P 173 (283)
|..||.||+.|...++++.+.++.|+.|++.++..+ .+++++|.+||++|
T Consensus 283 Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~------------------------------~~~~l~L~s~Li~P 332 (587)
T 3ky9_A 283 YGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRA------------------------------NNGRFTLRDLLMVP 332 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHHH------------------------------HSSSCCHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhcc------------------------------ccCCCCHHHHHhHH
Confidence 999999999999999999999999999999986543 56889999999999
Q ss_pred cchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceEEE
Q psy480 174 VQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLR 253 (283)
Q Consensus 174 vQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~LI~ 253 (283)
||||+||+|||++|+|+|| +||||..|..|++.++.++..||+.+++.|+..++.+++++|+|+. ..|..++| +++
T Consensus 333 vQRi~rY~LLL~~Llk~T~-~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~--~~l~~~gr-ll~ 408 (587)
T 3ky9_A 333 MQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLD--QSLAHYGR-PKI 408 (587)
T ss_dssp HHHHTTHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEETCC--SCGGGGCC-EEE
T ss_pred HHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--cchhhcCc-eEE
Confidence 9999999999999999998 6999999999999999999999999999999999999999999985 35788888 899
Q ss_pred ecceeeccccccC---C----cccceeccc
Q psy480 254 QDDVTQLVSALVA---R----SSGKLEGAG 276 (283)
Q Consensus 254 eG~l~~~~~~~~~---r----~~~~l~~a~ 276 (283)
+|.+......... | |+|.|+.+.
T Consensus 409 ~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k 438 (587)
T 3ky9_A 409 DGELKITSVERRSKMDRYAFLLDKALLICK 438 (587)
T ss_dssp EEEEEEECSSCCSCEEEEEEEETTEEEEEE
T ss_pred EeeEEEEeccCCCcceEEEEEECCEEEEEE
Confidence 9999876533222 2 888888664
No 13
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.96 E-value=1.5e-28 Score=221.97 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=142.9
Q ss_pred CChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcC---CCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhh
Q psy480 11 TSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANW---DRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFK 87 (283)
Q Consensus 11 ~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~---~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 87 (283)
...++++..+|.++-+++ .+|..|+..|+.+...| .+...|||+|.+++..
T Consensus 117 ~l~~~~~~~iF~ni~~i~-~~~~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~------------------------- 170 (283)
T 3jv3_A 117 LLTEKEVAMIFVNWKELI-MCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH------------------------- 170 (283)
T ss_dssp SSCHHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHGGG-------------------------
T ss_pred CCCHHHHHHHccCHHHHH-HHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHhh-------------------------
Confidence 345678889999987775 88899999999888643 3457899999986543
Q ss_pred hHHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChh
Q psy480 88 SIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFF 167 (283)
Q Consensus 88 ~~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 167 (283)
+++|..||.||+.|...+..+.++|+.|+.|++.++..+ .|++++|.
T Consensus 171 ---~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~~~~~~------------------------------~~~~l~L~ 217 (283)
T 3jv3_A 171 ---MQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDP------------------------------RCKGMPLS 217 (283)
T ss_dssp ---GTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSG------------------------------GGTTCCHH
T ss_pred ---chhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHHHHhCc------------------------------cccCCCHH
Confidence 479999999999999999999999999999999987653 57889999
Q ss_pred hhhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy480 168 GLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILK 233 (283)
Q Consensus 168 ~lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~ 233 (283)
+||++|||||+||+|||++|+|+||++||||..|..|++.|+.++..||+.+++.|+..++.+||.
T Consensus 218 s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe~~r~~e~~~~l~~iQs 283 (283)
T 3jv3_A 218 SFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQA 283 (283)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-----
T ss_pred HHhhhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999998863
No 14
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.95 E-value=6.1e-28 Score=227.01 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=153.3
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCC-------------CchHHHHHhhhhhhHHHhhhcCCCCchhh
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRD-------------HKIGDVFVASFSKSIVLEIYSEPWPIGTG 78 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~-------------~~igdifl~~~~~~~~~~~~~~~~~~~~~ 78 (283)
..++++..+|+++-+++ ++|..|+..|+++...|+.. ..|||+|+.+...
T Consensus 47 l~~~~~~~iF~ni~~I~-~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~ig~~f~~~~~~---------------- 109 (377)
T 1foe_A 47 LTQDELDVLFGNLTEMV-EFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADR---------------- 109 (377)
T ss_dssp SCHHHHHHHHSSHHHHH-HHHHHHHHHHHHHHTTSSCGGGCCSGGGGHHHHHHHHHHHHHHTTG----------------
T ss_pred CCHHHHHHHHhCHHHHH-HHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHHHHHHHHHH----------------
Confidence 34678999999977775 89999999999999888542 3578888875432
Q ss_pred HHHHHHHhhhHHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhc
Q psy480 79 IIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQN 158 (283)
Q Consensus 79 ~~~~~~~f~~~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (283)
+++|..||.||+.|...+.++ ++|+.|+.|++.++..
T Consensus 110 ------------f~~Y~~Y~~n~~~a~~~l~~~-~~~~~f~~fl~~~~~~------------------------------ 146 (377)
T 1foe_A 110 ------------FKLYSAFCASHTKVPKVLVKA-KTDTAFKAFLDAQNPR------------------------------ 146 (377)
T ss_dssp ------------GGGHHHHHHHTTTHHHHHTTT-TTCHHHHHHHHHHCTT------------------------------
T ss_pred ------------HHHHHHHHHhHHHHHHHHHHH-hcCHHHHHHHHHHhhc------------------------------
Confidence 489999999999999999874 7899999999998543
Q ss_pred cccCCCChhhhhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcC
Q psy480 159 SSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDI-LKSISG 237 (283)
Q Consensus 159 ~~~~~~~L~~lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l-~~~i~g 237 (283)
.+++++|.+||++|||||+||+|||++|+|+||++||||..|..|++.|+.++..||+.++..|+..++.+. ...+.|
T Consensus 147 -~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe~~r~~e~~~~~~~~l~~~~~~ 225 (377)
T 1foe_A 147 -QQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTG 225 (377)
T ss_dssp -CCGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred -cccCcCHHHHhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 246789999999999999999999999999999999999999999999999999999999999998887653 334444
Q ss_pred CCCCccccccCceEEEecceeecc
Q psy480 238 KLSTRPLADVHRVLLRQDDVTQLV 261 (283)
Q Consensus 238 ~~~~~~L~~~~R~LI~eG~l~~~~ 261 (283)
..........+ +|+.+|.++.+.
T Consensus 226 ~~~~~~~~~~g-~ll~~~~~~~~~ 248 (377)
T 1foe_A 226 EKKEVADLSMG-DLLLHTSVIWLN 248 (377)
T ss_dssp CSCSSCCCCGG-GEEEEEEEEESS
T ss_pred ccccccccCcc-ceeeecceeecc
Confidence 43211233444 478899888664
No 15
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.95 E-value=2.4e-28 Score=212.47 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=132.3
Q ss_pred hHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHH
Q psy480 13 WEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLE 92 (283)
Q Consensus 13 ~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~ 92 (283)
.++++..+|.++-+++ ++|..|+..|+++...|+....|||+|+++++. |.+
T Consensus 50 ~~~~~~~iF~ni~~i~-~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~---------------------------f~~ 101 (209)
T 1by1_A 50 SSANISYLMGNLEEIC-SFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQ---------------------------MKT 101 (209)
T ss_dssp SSSGGGTTHHHHHHHH-HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH---------------------------HHH
T ss_pred CHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH---------------------------HHH
Confidence 3457888888876664 888899999999999998889999999986543 235
Q ss_pred hHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhc
Q psy480 93 IYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVK 172 (283)
Q Consensus 93 ~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~ 172 (283)
+|..||.||+.|...+.++ ++.|++|++.++.. .+++++|.+||++
T Consensus 102 ~Y~~Y~~n~~~a~~~l~~~---~~~f~~fl~~~~~~-------------------------------~~~~l~L~s~Li~ 147 (209)
T 1by1_A 102 LYLTYCANHPSAVNVLTEH---SEELGEFMETKGAS-------------------------------SPGILVLTTGLSK 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TTTHHHHTTTTCCC-------------------------------SSTTTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHh---CHHHHHHHHHhcCC-------------------------------CCCcCCHHHHhhH
Confidence 9999999999999999875 78899998887432 4567999999999
Q ss_pred ccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy480 173 PVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQT 225 (283)
Q Consensus 173 PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~ 225 (283)
||||||||+|||++|+|+||++||||..+..|++.+++++..||+.+++.|+.
T Consensus 148 PvQRi~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~ 200 (209)
T 1by1_A 148 PFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELE 200 (209)
T ss_dssp TTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHhHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877653
No 16
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.95 E-value=4.5e-30 Score=249.47 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCC---CCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhh
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWD---RDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKS 88 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~---~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 88 (283)
..++++..+|.++-+++ ++|..|+..|+.+...|+ +...|||+|++++..
T Consensus 63 l~~~~~~~iF~ni~~i~-~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~-------------------------- 115 (510)
T 3jzy_A 63 LTEGEMALIFVNWKELI-MSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSH-------------------------- 115 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHccCHHHHH-HHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHhHH--------------------------
Confidence 44567888888876664 788888889999887654 357899999986543
Q ss_pred HHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhh
Q psy480 89 IVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFG 168 (283)
Q Consensus 89 ~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 168 (283)
+++|..||.||+.|...+.++.++|+.|+.|++.++..+ .|++++|.+
T Consensus 116 --~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~------------------------------~~~~l~L~~ 163 (510)
T 3jzy_A 116 --MQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDP------------------------------RCKGMPLSS 163 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCc------------------------------cccCCCHHH
Confidence 489999999999999999999999999999999987643 577899999
Q ss_pred hhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccc-
Q psy480 169 LMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSIS--GKLSTRPLA- 245 (283)
Q Consensus 169 lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~--g~~~~~~L~- 245 (283)
||++|||||+||+|||++|+|+||++||||..|.+|++.++.++..||+.+++.|+..++.++++++. |... .++
T Consensus 164 ~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~l~~~l~~~g~~~--~l~~ 241 (510)
T 3jzy_A 164 FLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAE--QLIF 241 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc--cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 4321 222
Q ss_pred ------ccCceEEEecceeeccccccCC----cccceecccc
Q psy480 246 ------DVHRVLLRQDDVTQLVSALVAR----SSGKLEGAGL 277 (283)
Q Consensus 246 ------~~~R~LI~eG~l~~~~~~~~~r----~~~~l~~a~~ 277 (283)
.++|+||++|.+++... ...| |+|.|+.+..
T Consensus 242 ~~~~~~~~~r~li~eG~l~~~~~-~~~~~~fLF~d~Ll~~k~ 282 (510)
T 3jzy_A 242 NSLTNCLGPRKLLHSGKLYKTKS-NKELHGFLFNDFLLLTYM 282 (510)
T ss_dssp ------------------------------------------
T ss_pred cccccccccceeEEeceEEEcCC-CcEEEEEcccceeEEeee
Confidence 57899999999987632 2233 8999998763
No 17
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.93 E-value=7.1e-27 Score=245.19 Aligned_cols=207 Identities=15% Similarity=0.210 Sum_probs=170.9
Q ss_pred ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCC---CCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhh
Q psy480 12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDR---DHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKS 88 (283)
Q Consensus 12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~---~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 88 (283)
..++++..+|.++-+++ ++|..|+..|++++..|+. ...|||+|+++....
T Consensus 237 l~~~~~~~IF~Ni~~I~-~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~~------------------------- 290 (1049)
T 3ksy_A 237 FSANDVENIFSRIVDIH-ELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEEL------------------------- 290 (1049)
T ss_dssp SCHHHHHHHHSSHHHHH-HHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHTT-------------------------
T ss_pred CCHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHh-------------------------
Confidence 46788999999988885 8999999999999987644 488999999865321
Q ss_pred HHHHhHHHHHHcH--HHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCCh
Q psy480 89 IVLEIYSEFINNF--SAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSF 166 (283)
Q Consensus 89 ~~l~~Y~~Y~~n~--~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 166 (283)
.+++|..||.|| +.|...++++. +++.|..|++.+.... +.|++++|
T Consensus 291 -~F~~Y~~Yc~ny~~~~a~~~l~~l~-~~~~f~~fl~~~~~~~-----------------------------~~~~~l~L 339 (1049)
T 3ksy_A 291 -AFDPYESYARDILRPGFHDRFLSQL-SKPGAALYLQSIGEGF-----------------------------KEAVQYVL 339 (1049)
T ss_dssp -TTSHHHHHHHHHHCTTHHHHHHTTS-SSTTHHHHHHHHCTTH-----------------------------HHHHHHTH
T ss_pred -hhhHHHHHHHhhccHHHHHHHHHHh-cChHHHHHHHHHHhhh-----------------------------hhhhcCCh
Confidence 248999999997 89999999877 7899999999843221 14567899
Q ss_pred hhhhhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH
Q psy480 167 FGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNE----------------------RKREAEQ 224 (283)
Q Consensus 167 ~~lLi~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~----------------------~~~~~E~ 224 (283)
.+||++|||||+||+|||++|+|+||. |+||..|.+|++.|+.++..||+ .+++.|+
T Consensus 340 ~s~LikPvQRI~rY~LLL~~LlK~Tp~-~~D~~~L~~Al~~i~~v~~~VNe~~~~~~~k~r~~e~~~~~~~n~~kr~~e~ 418 (1049)
T 3ksy_A 340 PRLLLAPVYHCLHYFELLKQLEEKSED-QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLA 418 (1049)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTHHHHHHHHHHTTSTTHHHHHHHHC-------------C
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999985 59999999999999999999997 3346677
Q ss_pred HHHHHHHHHHhcCCCCCccccccCceEEEecceeeccccccCC----cccceeccccC
Q psy480 225 TQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVAR----SSGKLEGAGLN 278 (283)
Q Consensus 225 ~~~l~~l~~~i~g~~~~~~L~~~~R~LI~eG~l~~~~~~~~~r----~~~~l~~a~~~ 278 (283)
..++.+++..+.|+.. .++..++|+||++|.+++.+.+ ..| |+|+|+.++-.
T Consensus 419 ~~~l~~lq~~i~~~~~-~~l~~~~r~Li~eG~l~~~~~k-~~r~~FLF~D~Ll~~K~~ 474 (1049)
T 3ksy_A 419 IKKMNEIQKNIDGWEG-KDIGQCCNEFIMEGTLTRVGAK-HERHIFLFDGLMICCKSN 474 (1049)
T ss_dssp CSHHHHHHHTSSSCCS-SCGGGTCSCCCCEEEEEETTCS-SCEEEEEETTEEEEEECC
T ss_pred HHHHHHHHHHhhcCCc-cccccccceEEEeceEEEEccC-ceEEEEeeCCeEEEEEec
Confidence 7899999999999854 6799999999999999987743 333 99999988765
No 18
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.93 E-value=1.8e-25 Score=208.90 Aligned_cols=181 Identities=20% Similarity=0.235 Sum_probs=144.1
Q ss_pred HHhhhhccCchhHHHHHhH-HHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHh
Q psy480 15 EECHQLHPSSGSEHEDLSS-DVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEI 93 (283)
Q Consensus 15 ~~~~~l~~~~l~~h~~~~~-~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~ 93 (283)
+++..+|.++-+++ ++|. .|+..|+++..+| ..|||+|+++.+. +++
T Consensus 56 ~~~~~iF~ni~~I~-~~h~~~fl~~Le~~~~~~---~~ig~~fl~~~~~----------------------------f~~ 103 (353)
T 1kz7_A 56 NKKNILFGNMEEIY-HFHNRIFLRELESCIDCP---ELVGRCFLERMEE----------------------------FQI 103 (353)
T ss_dssp HTHHHHHTTHHHHH-HHHHHTHHHHHHTTTTCG---GGHHHHHHTTTTG----------------------------GGH
T ss_pred hhHHHHHhCHHHHH-HHHHHHHHHHHHHHhcCH---HHHHHHHHHhhHH----------------------------HHH
Confidence 57888999877775 7875 7999999988654 6899999986643 389
Q ss_pred HHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcc
Q psy480 94 YSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKP 173 (283)
Q Consensus 94 Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~P 173 (283)
|..||.||+.|..+++++. .+ .|++.|... .+++++|.+||++|
T Consensus 104 Y~~Y~~n~~~a~~~l~~~~-~~----~f~~~~~~~-------------------------------~~~~l~L~~~Li~P 147 (353)
T 1kz7_A 104 YEKYCQNKPRSESLWRQCS-DC----PFFQECQKK-------------------------------LDHKLSLDSYLLKP 147 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TC----HHHHHHHHH-------------------------------HTCSSCHHHHHTHH
T ss_pred HHHHHhChHHHHHHHHHhh-cc----hHHHHHHHh-------------------------------cCCCCCHHHHHHHH
Confidence 9999999999999998754 33 455555431 25789999999999
Q ss_pred cchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceEEE
Q psy480 174 VQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLR 253 (283)
Q Consensus 174 vQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~LI~ 253 (283)
||||+||+|||++|+|+||+ ||||..|..|++.|+.++..||+.++. ..|.|+.. +|.. .|+||+
T Consensus 148 vQRi~rY~LLL~~llk~t~~-~~d~~~L~~Al~~i~~v~~~iN~~~~~-----------~~i~~~~~--~L~~-~g~ll~ 212 (353)
T 1kz7_A 148 VQRITKYQLLLKEMLKYSKH-CEGAEDLQEALSSILGILKAVNDSMHL-----------IAITGYDG--NLGD-LGKLLM 212 (353)
T ss_dssp HHHHHHHHHHHHHHHHTCTT-STTHHHHHHHHHHHHHHHHHHHHHHHH-----------TTEESCCS--CGGG-GCCEEE
T ss_pred HHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCC--ChhH-hhhhhe
Confidence 99999999999999999995 799999999999999999999998753 25788853 3544 455999
Q ss_pred ecceeeccccccC--------------C----cccceeccccC
Q psy480 254 QDDVTQLVSALVA--------------R----SSGKLEGAGLN 278 (283)
Q Consensus 254 eG~l~~~~~~~~~--------------r----~~~~l~~a~~~ 278 (283)
+|.+..+.....| | |+|.|+.++-.
T Consensus 213 ~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~ 255 (353)
T 1kz7_A 213 QGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKR 255 (353)
T ss_dssp EEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEE
T ss_pred ecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEec
Confidence 9999865432111 2 88998887654
No 19
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.92 E-value=5e-25 Score=205.88 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=141.4
Q ss_pred HHhhhhccCchhHHHHHhHH-HHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHh
Q psy480 15 EECHQLHPSSGSEHEDLSSD-VDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEI 93 (283)
Q Consensus 15 ~~~~~l~~~~l~~h~~~~~~-ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~ 93 (283)
+++..+|.++-+++ ++|.. |+..|+++..+| ..|||+|+++... +++
T Consensus 53 ~~~~~iF~ni~~I~-~~h~~~fl~~L~~~~~~~---~~ig~~fl~~~~~----------------------------f~~ 100 (354)
T 2rgn_B 53 GRDRIVFGNIQQIY-EWHRDYFLQELQRCLKDP---DWLAQLFIKHERR----------------------------LHM 100 (354)
T ss_dssp GGHHHHHTTHHHHH-HHHHHTHHHHHHHHHSCG---GGHHHHHHHTTTT----------------------------THH
T ss_pred hhHHHHhhCHHHHH-HHHHHHHHHHHHHHHcCH---HHHHHHHHHhHHH----------------------------HHH
Confidence 45678888876665 78888 899999988765 6799999986543 489
Q ss_pred HHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcc
Q psy480 94 YSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKP 173 (283)
Q Consensus 94 Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~P 173 (283)
|..||.||+.|..++.++. ++.|.++.+. .+++++|.+||++|
T Consensus 101 Y~~Y~~n~~~a~~~l~~~~--~~~f~~~~~~-----------------------------------~~~~l~L~s~Li~P 143 (354)
T 2rgn_B 101 YVVYCQNKPKSEHVVSEFG--DSYFEELRQQ-----------------------------------LGHRLQLNDLLIKP 143 (354)
T ss_dssp HHHHHHTSHHHHHHHTTTS--HHHHHHHHHH-----------------------------------HCCSSCHHHHTTHH
T ss_pred HHHHHhCcHHHHHHHHHHH--HHHHHHHHHh-----------------------------------cCCCCCHHHHhhhH
Confidence 9999999999999997753 2233333221 35789999999999
Q ss_pred cchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceEEE
Q psy480 174 VQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLR 253 (283)
Q Consensus 174 vQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~LI~ 253 (283)
||||+||+|||++|+|+||++||||..+..|++.|+.++..+|+.++. .+|.|+.. .+...+.||+
T Consensus 144 vQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~~~~~-----------~~i~~~~~---~l~~~~~Ll~ 209 (354)
T 2rgn_B 144 VQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMMTL-----------GRLRGFEG---KLTAQGKLLG 209 (354)
T ss_dssp HHHHTSHHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHHHHHG-----------GGCBSCCS---CSTTSCCEEE
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCChh---hhhhhccccc
Confidence 999999999999999999999999999999999999999999997642 36777742 3445677899
Q ss_pred ecceeecccc------ccCC------cccceeccccC
Q psy480 254 QDDVTQLVSA------LVAR------SSGKLEGAGLN 278 (283)
Q Consensus 254 eG~l~~~~~~------~~~r------~~~~l~~a~~~ 278 (283)
+|.+...... ..++ |+|.|+.+...
T Consensus 210 ~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~ 246 (354)
T 2rgn_B 210 QDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEAL 246 (354)
T ss_dssp EEEEEEECC-------CCCCEEEEEEESSEEEEEEEC
T ss_pred cceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEec
Confidence 9987644321 1122 99999888654
No 20
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.91 E-value=6.7e-24 Score=194.63 Aligned_cols=177 Identities=16% Similarity=0.170 Sum_probs=135.7
Q ss_pred HHhhhhccCchhHHHHHhHH-HHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHHHh
Q psy480 15 EECHQLHPSSGSEHEDLSSD-VDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEI 93 (283)
Q Consensus 15 ~~~~~l~~~~l~~h~~~~~~-ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~ 93 (283)
+++..+|.++-+++ ++|.+ |+..|+++...| ..|||+|+++.+. +++
T Consensus 52 ~~~~~iF~ni~~i~-~~h~~~fl~~L~~~~~~~---~~ig~~f~~~~~~----------------------------~~~ 99 (311)
T 1nty_A 52 NKELIIFGNMQEIY-EFHNNIFLKELEKYEQLP---EDVGHCFVTWADK----------------------------FQM 99 (311)
T ss_dssp TCHHHHHTTHHHHH-HHHHHTHHHHHHHTTTCG---GGTHHHHHHTTTT----------------------------THH
T ss_pred hhHHHhhcCHHHHH-HHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHH----------------------------hHH
Confidence 45778888876664 78885 899999887543 6899999987643 489
Q ss_pred HHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhhcc
Q psy480 94 YSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKP 173 (283)
Q Consensus 94 Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi~P 173 (283)
|..||.||+.|...+.+.. ..|++.+... .+.+++|.+||++|
T Consensus 100 Y~~Y~~n~~~a~~~l~~~~------~~f~~~~~~~-------------------------------~~~~l~L~~~Li~P 142 (311)
T 1nty_A 100 YVTYCKNKPDSTQLILEHA------GSYFDEIQQR-------------------------------HGLANSISSYLIKP 142 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHT------TTHHHHHHHH-------------------------------HTCSSCHHHHHTHH
T ss_pred HHHHHhCcHHHHHHHHHHH------HHHHHHHHHh-------------------------------ccCCCCHHHHhhhh
Confidence 9999999999999997532 2355554332 12468999999999
Q ss_pred cchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCceEEE
Q psy480 174 VQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLR 253 (283)
Q Consensus 174 vQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R~LI~ 253 (283)
|||||||||||++|+|+||++|+| +++|++.|+.++..+|+.++. ..++|+.. .+...|+|+.
T Consensus 143 vQRi~rY~LLL~~llk~t~~~h~~---l~~Al~~~~~v~~~~N~~~~~-----------~~l~~~~~---~l~~~g~li~ 205 (311)
T 1nty_A 143 VQRITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRANDAMHL-----------SMLEGFDE---NIESQGELIL 205 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHHHHHH-----------TTEESCCS---CSGGGCCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHH---HHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCC---ChHhcCCcee
Confidence 999999999999999999999987 789999999999999997752 34677732 3455667999
Q ss_pred ecceeecccc---ccCC------cccceecccc
Q psy480 254 QDDVTQLVSA---LVAR------SSGKLEGAGL 277 (283)
Q Consensus 254 eG~l~~~~~~---~~~r------~~~~l~~a~~ 277 (283)
+|.+...... ..++ |+|.|+.++-
T Consensus 206 ~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~ 238 (311)
T 1nty_A 206 QESFQVWDPKTLIRKGRERHLFLFEMSLVFSKE 238 (311)
T ss_dssp EEEEEEECSSSSSCCEEEEEEEEESSEEEEEEE
T ss_pred eeeEEEEcCcccccccceeEEEeccCeEEEEEe
Confidence 9988766422 1122 8999888753
No 21
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=98.48 E-value=5.6e-09 Score=88.88 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=68.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----------ccccccCceEEEecceee
Q psy480 190 HTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLST----------RPLADVHRVLLRQDDVTQ 259 (283)
Q Consensus 190 ~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~----------~~L~~~~R~LI~eG~l~~ 259 (283)
||+++|+||..|.+|++.++.++.+||+.++++|+.++|.+|+++|++.... .+| .+|+||++|.|.+
T Consensus 2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe~vre~E~~~rL~eiq~~l~~~~~~~~~~~~~f~~~dL--~~R~Ll~eG~L~~ 79 (185)
T 2lg1_A 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDL--KRKKLVRDGSVFL 79 (185)
T ss_dssp CSSTTTSCCTTSCCSSSSSTTTSGGGGGGHHHHHHHHHHHHHHHSSCSSCCEECTTSCEECHHHH--TTSCEEEEEEEEE
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccccccccccccccc--CCCceeeeceEEE
Confidence 7999999999999999999999999999999999999999999999864210 112 4699999999985
Q ss_pred ccccccC--C----cccceecc
Q psy480 260 LVSALVA--R----SSGKLEGA 275 (283)
Q Consensus 260 ~~~~~~~--r----~~~~l~~a 275 (283)
....... + |+|+|+..
T Consensus 80 k~~~~~~~d~~~fLf~D~Ll~~ 101 (185)
T 2lg1_A 80 KNAAGRLKEVQAVLLTDILVFL 101 (185)
T ss_dssp ECTTCCEEEEEEEEESSEEECC
T ss_pred eccCCCeeeEEEEeecCEEEEE
Confidence 5433221 2 78877655
No 22
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=89.21 E-value=0.15 Score=39.17 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=24.7
Q ss_pred cccCceEEEecceeecccccc---CC-----cccceeccccC
Q psy480 245 ADVHRVLLRQDDVTQLVSALV---AR-----SSGKLEGAGLN 278 (283)
Q Consensus 245 ~~~~R~LI~eG~l~~~~~~~~---~r-----~~~~l~~a~~~ 278 (283)
-.|+|.||+||+++++..... .| |||.|+-|...
T Consensus 2 ~~pgR~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~ 43 (113)
T 1zc3_B 2 ETPGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWL 43 (113)
T ss_dssp ---CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEE
T ss_pred CCCCeEEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEe
Confidence 468999999999999875332 12 99999988764
No 23
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=85.14 E-value=13 Score=32.85 Aligned_cols=107 Identities=16% Similarity=0.274 Sum_probs=68.3
Q ss_pred HHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhh
Q psy480 90 VLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGL 169 (283)
Q Consensus 90 ~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (283)
|+-.|.-|..+.|.....+-..-..++ .+- |--+-|+--+.++-.... ..++++....
T Consensus 267 flvlyryylrhvpkniaklcsigmtde--------iev---------grelyplpvieefdkqqk-----mtkkmsvlqm 324 (518)
T 4gou_A 267 FLVLYRYYLRHVPKNIAKLCSIGMTDE--------IEV---------GRELYPLPVIEEFDKQQK-----MTKKMSVLQM 324 (518)
T ss_dssp GGGGGHHHHTTTTHHHHHHHHHHTSCG--------GGT---------TTTTCSHHHHHHHHHHHH-----HHTSCCHHHH
T ss_pred ehHHHHHHHHhccHHHHHHccCCCcch--------hhc---------cccccCcchHHHHHHHHH-----HHHHHHHHHH
Confidence 467899999999887766643221110 000 001112222222221111 2357788999
Q ss_pred hhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy480 170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNER 218 (283)
Q Consensus 170 Li~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~ 218 (283)
|.-|--|+..|..-..+.+|-|..++.+...+.-...++.-.-..||..
T Consensus 325 lvypyfrvrtyqayvddfikitkkdsqevkelevvhsqlaifqelinty 373 (518)
T 4gou_A 325 LVYPYFRVRTYQAYVDDFIKITKKDSQEVKELEVVHSQLAIFQELINTY 373 (518)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhheehhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998888777766666665555555543
No 24
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=31.54 E-value=62 Score=29.51 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred HHHhhhhccCchhHHHHHhHHHHHHhhh---------hhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHH
Q psy480 14 EEECHQLHPSSGSEHEDLSSDVDSESNN---------PVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVM 84 (283)
Q Consensus 14 ~~~~~~l~~~~l~~h~~~~~~ll~~L~~---------~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (283)
-..++.-++.|++.|+.|...|...+.. .+..|.+.-.+...|...+..
T Consensus 72 ~~~iF~ni~~I~~~h~~fL~~L~~~~~~~~~~~~ig~ifl~~~~~~~~Y~~Y~~n~~~---------------------- 129 (434)
T 3mpx_A 72 LRQGLSELPAIHDLHQGILEELEERLSNWESQQKVADVFLAREQGFDHHATHILQFDR---------------------- 129 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCTHHHHTTTTTHHHHHHHHHHHHH----------------------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhhHHHHHHHHHHHhHHH----------------------
Confidence 3556777889999999999999988754 223333322233333332221
Q ss_pred HhhhHHHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhh
Q psy480 85 CFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQ 157 (283)
Q Consensus 85 ~f~~~~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (283)
....+..++.+.+.....++.+.+ ++. +. +..+.++.++|+|+.++--.+++..-
T Consensus 130 -----a~~~l~~~~~~~~~f~~~l~~~~~-~~~-------~~-----~l~L~s~Li~PvQRi~rY~LLL~~ll 184 (434)
T 3mpx_A 130 -----YLGLLSENCLHSPRLAAAVREFEQ-SVQ-------GG-----SQTAKHRLLRVVQRLFQYQVLLTDYL 184 (434)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHT-C------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhChHHHHHHHHHHc-Ccc-------cC-----CCCHHHHHhhhHHhhhHHHHHHHHHH
Confidence 235556666666666666665432 221 00 12334567889999999877777543
No 25
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=23.97 E-value=1.9e+02 Score=21.17 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy480 196 PDRMSLQLALTQLESLAELLNERKREAEQTQAFKD 230 (283)
Q Consensus 196 pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~ 230 (283)
.-|+.|++-+.++++.-..++.-..+ ...++..
T Consensus 62 ~~yE~LQDkL~qi~eAR~ALdaLR~e--H~~Klrr 94 (98)
T 3f1i_H 62 LYYEGLQDKLAQIRDARGALSALREE--HREKLRR 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 34888999999998888888775443 3555543
No 26
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=22.21 E-value=1.4e+02 Score=26.52 Aligned_cols=27 Identities=4% Similarity=-0.103 Sum_probs=21.4
Q ss_pred HHhhhhccCchhHHHHHhHHHHHHhhh
Q psy480 15 EECHQLHPSSGSEHEDLSSDVDSESNN 41 (283)
Q Consensus 15 ~~~~~l~~~~l~~h~~~~~~ll~~L~~ 41 (283)
..++.-++.|++.|+.|...+......
T Consensus 69 ~~iF~ni~~I~~~h~~fl~~L~~~~~~ 95 (377)
T 3p6a_A 69 QNIFPSLDELIEVHSLFLDRLMKRRQE 95 (377)
T ss_dssp HHHSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHhc
Confidence 446667888999999999999876554
Done!