RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy480
(283 letters)
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 117 bits (294), Expect = 2e-30
Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 61/218 (27%)
Query: 43 VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
++NW+ K+ DVF+A + ++ I F
Sbjct: 97 LSNWESQQKVADVFLAREQG----------------------------FDHHATHILQFD 128
Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
+ + P LA + + Q+
Sbjct: 129 RYLGLLSENCLHSPRLAAAVREFE------------------------------QSVQGG 158
Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREA 222
+ +++ VQR Q+ + L D LN+ + + Q AL+ + + + N+ +
Sbjct: 159 SQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQG 218
Query: 223 EQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQL 260
E Q I S+ G+ L R L++ + ++
Sbjct: 219 ENLQKLVHIEHSVRGQ---GDLLQPGREFLKEGTLMKV 253
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 106 bits (268), Expect = 3e-28
Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 62/192 (32%)
Query: 43 VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
+ ++G F+ + K++ Y + N
Sbjct: 79 TKLPEAQQRVGGCFLNLMPQ-----------------------MKTL----YLTYCANHP 111
Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
+A++V + L EF +++ SS L L +
Sbjct: 112 SAVNVLT---EHSEELGEFMETKGASSPGILV------------------LTT------- 143
Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREA 222
+ KP R ++ L++L H H DR +Q ++ ++L+ E ++
Sbjct: 144 ------GLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRK 197
Query: 223 E-QTQAFKDILK 233
E + Q + ++
Sbjct: 198 ELELQILTEAIR 209
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 100 bits (252), Expect = 2e-25
Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 59/204 (28%)
Query: 28 HEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFK 87
+ L + IGD+ A
Sbjct: 137 NIKLLKALR-VRKKMSGEKMPVKMIGDILSAQLPH------------------------- 170
Query: 88 SIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFP 147
++ Y F + + + ++ + P EF K
Sbjct: 171 ---MQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAM-------------------- 207
Query: 148 QFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQ 207
+ + ++KP+QR ++ L ++++L +T HPD L+ AL +
Sbjct: 208 ----------DPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEK 257
Query: 208 LESLAELLNERKREAEQTQAFKDI 231
E L +NE RE E + + I
Sbjct: 258 AEELCSQVNEGVREKENSDRLEWI 281
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 100 bits (250), Expect = 2e-24
Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 67/231 (29%)
Query: 28 HEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFK 87
H ++ P + VF+ +
Sbjct: 78 HTHFLKELKDALAGP-----GATTLYQVFIKYKER------------------------- 107
Query: 88 SIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFP 147
+Y + + +A + + + +
Sbjct: 108 ---FLVYGRYCSQVESASKHLDQVATAREDVQMKLE------------------------ 140
Query: 148 QFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQ 207
+ Q ++ R + L++ P+QR ++ L LQ+L+ HT ++ +L+LAL
Sbjct: 141 ------ECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDA 193
Query: 208 LESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVT 258
+ LA+ +NE KR+ E + + SI + LA+ R ++
Sbjct: 194 MRDLAQCVNEVKRDNETLRQITNFQLSIENL--DQSLANYGR-PKIDGELK 241
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 95.9 bits (238), Expect = 2e-22
Identities = 35/231 (15%), Positives = 72/231 (31%), Gaps = 67/231 (29%)
Query: 28 HEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFK 87
H ++ P A + VF+ +
Sbjct: 250 HTHFLKEMKEALGTPGAA-----NLYQVFIKYKER------------------------- 279
Query: 88 SIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFP 147
+Y + + +A + + + +
Sbjct: 280 ---FLVYGRYCSQVESASKHLDRVAAAREDVQMKLE------------------------ 312
Query: 148 QFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQ 207
+ Q ++ R + L++ P+QR ++ L LQ+L+ HT ++ +L+LAL
Sbjct: 313 ------ECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QEAMEKENLRLALDA 365
Query: 208 LESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVT 258
+ LA+ +NE KR+ E + + SI + LA R ++
Sbjct: 366 MRDLAQCVNEVKRDNETLRQITNFQLSIENL--DQSLAHYGR-PKIDGELK 413
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 91.7 bits (228), Expect = 1e-21
Identities = 33/214 (15%), Positives = 66/214 (30%), Gaps = 61/214 (28%)
Query: 45 NWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAA 104
+G + V L Y + +N AA
Sbjct: 87 PDGSTEHVGPILVGWLPC----------------------------LSSYDSYCSNQVAA 118
Query: 105 MDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRL 164
+ K+ + +F + S R +L
Sbjct: 119 KALLD-HKKQDHRVQDFLQRCLESPFSR------------------------------KL 147
Query: 165 SFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQ 224
+ + P R ++ L L+++L HT + +PD+ L+ A+ ++ + +N + E+E
Sbjct: 148 DLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESEC 207
Query: 225 TQAFKDILKSISGKLSTRPLADVHRVLLRQDDVT 258
+ +L G+ L D RVL ++
Sbjct: 208 RYYKERLLYLEEGQ--KDSLIDSSRVLCCHGELK 239
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 91.9 bits (228), Expect = 2e-21
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 34/178 (19%)
Query: 85 CFKSIV--LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKP 142
CF IYSE+ NN A + K FF++ +
Sbjct: 121 CFLEHQDGFWIYSEYCNNHLDACMELS-KLMKDSRYQHFFEACRLLQQMI---------- 169
Query: 143 VQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQ 202
++ G ++ PVQ+ ++ L L +LL +T H D +
Sbjct: 170 --------------------DIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVA 209
Query: 203 LALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQL 260
AL + ++ + +NERKR E S+ + D L+ ++ +
Sbjct: 210 AALAVMRNVTQQINERKRRLENIDKIAQWQASVLD-WEGDDILDRSSELIYTGEMAWI 266
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 89.7 bits (222), Expect = 9e-21
Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 32/181 (17%)
Query: 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFI 150
++YS F + + V ++K A F ++ +
Sbjct: 110 FKLYSAFCASHTKVPKVLV-KAKTDTAFKAFLDAQNPRQQHSST---------------- 152
Query: 151 LFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLES 210
L+S ++KP+QR ++ L L++L T + L +A+ +
Sbjct: 153 --LES-------------YLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNK 197
Query: 211 LAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVARSSG 270
+A +NE ++ E+ A D L + LL V L
Sbjct: 198 VASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLSMGDLLLHTSVIWLNPPASLGKWK 257
Query: 271 K 271
K
Sbjct: 258 K 258
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 88.5 bits (219), Expect = 5e-20
Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 63/233 (27%)
Query: 28 HEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFK 87
+ ++ N ++G F+ +
Sbjct: 174 QKAFVKALEQRFNRE---RPHLSELGACFLEHQAD------------------------- 205
Query: 88 SIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFP 147
+IYSE+ NN A K FF++ +
Sbjct: 206 ---FQIYSEYCNNHPNACVELS-RLTKLSKYVYFFEACRLLQKMI--------------- 246
Query: 148 QFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQ 207
+ L ++ PVQ+ ++ L L +LL +T H D ++ AL
Sbjct: 247 --DISLDG-------------FLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHA 291
Query: 208 LESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQL 260
++++A+L+NERKR E SI L L+ ++T++
Sbjct: 292 MKNVAQLINERKRRLENIDKIAQWQSSIED-WEGEDLLVRSSELIYSGELTRV 343
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 87.6 bits (217), Expect = 5e-20
Identities = 33/230 (14%), Positives = 73/230 (31%), Gaps = 62/230 (26%)
Query: 43 VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
+I D+ +A F E+ ++ ++F + S
Sbjct: 87 REEGPIIKEISDLMLARFDGPAREEL----------------------QQVAAQFCSYQS 124
Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
A+++ + + +K+ F + ++ R
Sbjct: 125 IALELIKTKQRKESRFQLFMQEAESHPQCR------------------------------ 154
Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREA 222
RL L++ +QR ++ L L+ ++ HT G + L A Q + + +NE ++
Sbjct: 155 RLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQT 214
Query: 223 EQTQAFKDILKSISGKLSTRP----------LADVHRVLLRQDDVTQLVS 262
E + K + R L R ++ + +T +S
Sbjct: 215 ENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRIS 264
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 88.2 bits (218), Expect = 7e-20
Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 39/202 (19%)
Query: 66 LEIYSEPWPIGTGIIRLVMCFKSIV--LEIYSEFINNFSAAMDVARGESKKKPALAEFFK 123
L + + + + + + ++ Y F + + + ++ + EF K
Sbjct: 89 LRVRKKTGGEKMPVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLK 148
Query: 124 SRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILF 183
+ + + ++KP+QR ++ L
Sbjct: 149 KLASDPRCK------------------------------GMPLSSFLLKPMQRITRYPLL 178
Query: 184 LQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRP 243
++ +L +T H D SL+LAL + E L +NE RE E + + I + +
Sbjct: 179 IRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQ 238
Query: 244 LADV-------HRVLLRQDDVT 258
L R LL +
Sbjct: 239 LIFNSLTNCLGPRKLLHSGKLY 260
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 86.5 bits (214), Expect = 2e-19
Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 62/230 (26%)
Query: 43 VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
+I D+ +A F + + ++ ++F + S
Sbjct: 129 REEGPIIKEISDLMLARFDGP----------------------AREELQQVAAQFCSYQS 166
Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
A+++ + + +K+ F + ++ R
Sbjct: 167 IALELIKTKQRKESRFQLFMQEAESHPQCR------------------------------ 196
Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREA 222
RL L++ +QR ++ L L+ ++ HT G + L A Q + + +NE ++
Sbjct: 197 RLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQT 256
Query: 223 EQTQAFKDILKSISGKLSTRP----------LADVHRVLLRQDDVTQLVS 262
E + K + R L R ++ + +T +S
Sbjct: 257 ENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRIS 306
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 81.1 bits (200), Expect = 9e-18
Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 63/229 (27%)
Query: 44 ANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSA 103
+ +IGDV +A F + S +I S F + S
Sbjct: 95 ESGYLIEEIGDVLLARFDGA----------------------EGSWFQKISSRFCSRQSF 132
Query: 104 AMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDR 163
A++ + + +K P F + ++ R R
Sbjct: 133 ALEQLKAKQRKDPRFCAFVQEAESRPRCR------------------------------R 162
Query: 164 LSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAE 223
L ++ +QR ++ L LQ + +T +R ++LA + +N+ R+ E
Sbjct: 163 LQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTEREKVELAAECCREILHHVNQAVRDME 221
Query: 224 QTQAFKDILKSISGKLSTRP----------LADVHRVLLRQDDVTQLVS 262
KD + + + L + L+ + +T V+
Sbjct: 222 DLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVT 270
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 78.8 bits (194), Expect = 8e-17
Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 65/241 (26%)
Query: 28 HEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFK 87
H L+ + + +IG+ + FS +
Sbjct: 79 HIGLNEQMKAVRKR--NETSVIDQIGEDLLTWFSGP----------------------GE 114
Query: 88 SIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFP 147
+ + F +N A+++ + KK F + +++ + R
Sbjct: 115 EKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCR--------------- 159
Query: 148 QFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQ 207
RL ++ +QR ++ L L ++ +T +R ++ A
Sbjct: 160 ---------------RLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPTEREKVKKAADH 203
Query: 208 LESLAELLNERKREAEQTQAFKDILKSISGK----------LSTRPLADVHRVLLRQDDV 257
+ +N+ +EAE Q +D + + R L R ++ + +
Sbjct: 204 CRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRKMIHEGPL 263
Query: 258 T 258
Sbjct: 264 V 264
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 77.4 bits (190), Expect = 3e-16
Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 63/229 (27%)
Query: 44 ANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSA 103
+ +IGDV +A F + S +I S F + S
Sbjct: 248 ESGYLIEEIGDVLLARFDGA----------------------EGSWFQKISSRFCSRQSF 285
Query: 104 AMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDR 163
A++ + + +K P F + ++ R R
Sbjct: 286 ALEQLKAKQRKDPRFCAFVQEAESRPRCR------------------------------R 315
Query: 164 LSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAE 223
L ++ +QR ++ L LQ + +T +R ++LA + +N+ R+ E
Sbjct: 316 LQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTEREKVELAAECCREILHHVNQAVRDME 374
Query: 224 QTQAFKDILKSISGKLST----------RPLADVHRVLLRQDDVTQLVS 262
KD + + + L + L+ + +T V+
Sbjct: 375 DLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVT 423
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 73.4 bits (180), Expect = 4e-15
Identities = 23/212 (10%), Positives = 60/212 (28%), Gaps = 35/212 (16%)
Query: 66 LEIYSEPWPIGTGIIRLVMCF----KSIVLEIYSEFINNFSAAMDVARGESKK-KPALAE 120
+E E G+ + CF + + + Y + + R S+ KP A
Sbjct: 66 IEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAAL 125
Query: 121 FFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQF 180
+ +S + L++ PV +
Sbjct: 126 YLQSIG-----------------------------EGFKEAVQYVLPRLLLAPVYHCLHY 156
Query: 181 ILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLS 240
L+ L + D+ L+ A+T L ++ + + ++ + + +
Sbjct: 157 FELLKQLEEKS-EDQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQM 215
Query: 241 TRPLADVHRVLLRQDDVTQLVSALVARSSGKL 272
+ ++ Q ++ + + +
Sbjct: 216 KGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEF 247
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 64.9 bits (158), Expect = 3e-12
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 39/145 (26%)
Query: 81 RLVMCFKSIV--LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGL 138
L F L +Y + N + V ++EF S
Sbjct: 86 WLAQLFIKHERRLHMYVVYCQNKPKSEHV----------VSEFGDS-------------- 121
Query: 139 MVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDR 198
+ + + RL L++KPVQR ++ L L+D L + D
Sbjct: 122 -------------YFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDT 168
Query: 199 MSLQLALTQLESLAELLNERKREAE 223
L+ A+ + + + N+
Sbjct: 169 ADLEQAVEVMCFVPKRCNDMMTLGR 193
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 59.8 bits (145), Expect = 1e-10
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 42/145 (28%)
Query: 81 RLVMCFKSIV--LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGL 138
+ CF + ++Y + N + + +
Sbjct: 85 DVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGS------------------------ 120
Query: 139 MVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDR 198
+ Q S ++KPVQR ++ L L++LL G +
Sbjct: 121 -------------YFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE- 166
Query: 199 MSLQLALTQLESLAELLNERKREAE 223
++ L + S+ + N+ +
Sbjct: 167 --IKDGLEVMLSVPKRANDAMHLSM 189
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 56.9 bits (137), Expect = 2e-09
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 39/155 (25%)
Query: 81 RLVMCFKSIV--LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGL 138
+ CF + +IY ++ N + + R S
Sbjct: 89 LVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCP----------------------- 125
Query: 139 MVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDR 198
F Q Q +LS ++KPVQR ++ L L+++L ++ H
Sbjct: 126 -------------FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKH-CEGA 171
Query: 199 MSLQLALTQLESLAELLNERKREAEQTQAFKDILK 233
LQ AL+ + + + +N+ T ++
Sbjct: 172 EDLQEALSSILGILKAVNDSMHLIAITGYDGNLGD 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 1e-08
Identities = 43/267 (16%), Positives = 87/267 (32%), Gaps = 57/267 (21%)
Query: 47 DRDHK-IGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFIN-----N 100
+ D K + D+ + SK + I + +G +RL S E+ +F+ N
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAV-SGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 101 FSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKP--VQRFPQFILFLQS--R 156
+ M + E ++ + + DRL + V R Q L L+
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALL 145
Query: 157 QNSSMDRLSFFGLMV--------------KPVQRFPQFILF----------------LQD 186
+ + G ++ VQ F +F LQ
Sbjct: 146 ELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 187 LLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKD---ILKSISGKLSTRP 243
LL P+ S + ++ + R +++ +++ +L ++ +
Sbjct: 205 LLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 244 LADVH-RVLL--RQDDVTQLVSALVAR 267
++ ++LL R VT +SA
Sbjct: 262 F-NLSCKILLTTRFKQVTDFLSAATTT 287
Score = 39.1 bits (90), Expect = 0.002
Identities = 49/288 (17%), Positives = 81/288 (28%), Gaps = 95/288 (32%)
Query: 10 ATSWEEECHQLHPSSG-----SEHEDLSSDVDSESNNPVANWDRDHKI------------ 52
+ + E Q PS + + L +D + V+ R
Sbjct: 95 MSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRP 149
Query: 53 -GDVFV---ASFSKSIVL----------------EIYSEPWPIGTGIIRLVMCFK-SIVL 91
+V + K+ + +I+ W + L C VL
Sbjct: 150 AKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIF---W------LNLKNCNSPETVL 199
Query: 92 EIYSEFINNFSAAMD---VARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQ 148
E+ + +D +R + K R +S L L KP +
Sbjct: 200 EM----LQKLLYQIDPNWTSRSDHSSNI------KLRIHSIQAELRRL-LKSKP---YEN 245
Query: 149 FILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILF------LQDLLNHTGHGHPDRMSLQ 202
+L L + QN+ + F L K IL + D L+ H
Sbjct: 246 CLLVLLNVQNAKA--WNAFNLSCK--------ILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 203 LALTQLES---LAELLNERK----REAEQTQAFKDILKSISGKLSTRP 243
+ LT E L + L+ R RE T L I+ +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAESIRDGL 341
Score = 36.4 bits (83), Expect = 0.009
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 177 FPQFIL---FLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQ-TQAFKDIL 232
F L FL+ + H S+ L QL+ + + + E+ A D L
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 233 KSISGKLSTRPLADVHRVLLRQDD 256
I L D+ R+ L +D
Sbjct: 553 PKIEENLICSKYTDLLRIALMAED 576
Score = 30.6 bits (68), Expect = 0.78
Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 52/197 (26%)
Query: 48 RDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCF-KSIVLEIYSEFINNFSAAMD 106
R ++ D A+ + I L+ +S V + ++++ D
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMT-------------LTPDEVKSLLLKYLDC--RPQD 317
Query: 107 VAR-------------GESKKK-PALAEFFKSRQNSSMDRL---SFFGLMVKPV---QRF 146
+ R ES + A + +K + + S L +P + F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMF 375
Query: 147 PQFILFLQSRQNS--SMDRLSFFGLMVKPVQRFPQFI---LFLQDLLNHTGHGHPDRMSL 201
+ +F ++ LS + ++ + L L+ P ++
Sbjct: 376 DRLSVF---PPSAHIPTILLSL--IWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTI 426
Query: 202 QLALTQLESLAELLNER 218
+ LE +L NE
Sbjct: 427 SIPSIYLELKVKLENEY 443
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 1e-06
Identities = 56/265 (21%), Positives = 87/265 (32%), Gaps = 75/265 (28%)
Query: 40 NNPVAN--WDR-DHKIGDVFVASFSKSIVLEIYSE-PWPIGTGIIRLVMCF-----KSIV 90
+ A W+R D+ D + FS +L+I P + L + F K I
Sbjct: 1638 TSKAAQDVWNRADNHFKDTY--GFS---ILDIVINNP-------VNLTIHFGGEKGKRIR 1685
Query: 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFG---LMVKPVQRFP 147
E YS I F +D G+ K + E N +F L+ +F
Sbjct: 1686 -ENYSAMI--FETIVD---GKLKTEKIFKEI-----NEHSTSYTFRSEKGLLSAT--QFT 1732
Query: 148 QFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSL----QL 203
Q L L + F + K P F GH SL L
Sbjct: 1733 QPALTLME--------KAAFEDL-KSKGLIPADATFA---------GH----SLGEYAAL 1770
Query: 204 A-----LTQLESLAELLNERKR-EAEQTQAFKDIL-KSISGKLSTRPLADVHRVLLRQDD 256
A ++ +ESL E++ R Q +D L +S G ++ P Q+
Sbjct: 1771 ASLADVMS-IESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVA--ASFSQEA 1825
Query: 257 VTQLVSALVARSSGKLEGAGLNFSG 281
+ +V + R+ +E N
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVEN 1850
Score = 43.9 bits (103), Expect = 4e-05
Identities = 37/263 (14%), Positives = 72/263 (27%), Gaps = 84/263 (31%)
Query: 29 EDLSSDVDSESNN-----PVANW--DRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIR 81
+L + W + + ++ S S P+ G+I+
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS---------CPL-IGVIQ 245
Query: 82 LVMCFKSIVLEIY----SEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFG 137
L + + ++ E + A ++G + + + SFF
Sbjct: 246 LA-HY-VVTAKLLGFTPGELRSYLKGATGHSQG------LVTAVAIA---ETDSWESFFV 294
Query: 138 LMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFIL---FLQDLLNHTGHG 194
+ K + +LF F G+ + +P L L+D L + G
Sbjct: 295 SVRKAIT-----VLF-------------FIGVRCY--EAYPNTSLPPSILEDSLEN-NEG 333
Query: 195 HPDRM-SLQ-LALTQLESLAELLNERKREAEQ--------TQAFKDILKSISG------- 237
P M S+ L Q++ N +Q + +SG
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-----VVSGPPQSLYG 388
Query: 238 ------KLSTRPLADVHRVLLRQ 254
K D R+ +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSE 411
Score = 40.4 bits (94), Expect = 5e-04
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 16/94 (17%)
Query: 183 FLQDLLNHT-GHGHPDRMSLQLALTQLESLAELLN--ERKREAEQTQAFKDILKSISGKL 239
F + L T G D + T E + + L E + F +L
Sbjct: 37 FNKILPEPTEGFAADDEPT-----TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC---- 87
Query: 240 STRPLADVHRVLLRQDDVTQLVSALVARSSGKLE 273
L + L +D+ L + L+ + L
Sbjct: 88 ----LTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Score = 36.2 bits (83), Expect = 0.011
Identities = 49/312 (15%), Positives = 93/312 (29%), Gaps = 109/312 (34%)
Query: 2 SHGA-------STSS---AT-SWEEECHQLH-PSSGSEHED-LSSDVDSESNNPVANWDR 48
SHG+ T+S A+ E+ L P+ G +D ++ +
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE------------ 59
Query: 49 DHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEF---------IN 99
V F + + EP +G F ++ +EF I+
Sbjct: 60 -------LVGKFLGYVSSLV--EPSKVGQ--------FDQVLNLCLTEFENCYLEGNDIH 102
Query: 100 NFSAAM--DVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQ 157
+A + + K K + + +R + +P + LF +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARI-----------MAKRPFDKKSNSALFRAVGE 151
Query: 158 NSSMDRLSFFGLMVKPVQRFPQF------ILFLQDL--LNHTGHGHPDRMSLQLALTQLE 209
++ +L F + ++L L T H + ++
Sbjct: 152 GNA--QL------------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDL--------IK 189
Query: 210 SLAELLNERKREAEQTQAFK----DILKSISGKLSTRPLAD------VHRVLLRQDDVTQ 259
AE L+E R + +IL+ + S P D + L+ V Q
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKDYLLSIPISCPLI---GVIQ 245
Query: 260 LVS-ALVARSSG 270
L + A+ G
Sbjct: 246 LAHYVVTAKLLG 257
Score = 33.9 bits (77), Expect = 0.062
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 22/68 (32%)
Query: 5 ASTSSATSWEE-----------------ECHQLHPSSGSEHEDLSSDVDSESNNP----- 42
+ + SWE C++ +P++ L +++ P
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 43 VANWDRDH 50
++N ++
Sbjct: 341 ISNLTQEQ 348
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 40.5 bits (94), Expect = 2e-04
Identities = 7/54 (12%), Positives = 20/54 (37%)
Query: 189 NHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTR 242
+ T ++ L +L+ ++ + ++ + E+ +I K R
Sbjct: 1 SMTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMR 54
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 29.5 bits (67), Expect = 1.3
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 190 HTGHGHPDRMS-LQ--LALTQLESLAELLNERKREAEQ-TQAFKDILK 233
H +G+ R+S + + + Q+E L + + +++ E + +
Sbjct: 221 HLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYFS 268
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.4
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 22/41 (53%)
Query: 91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMD 131
L++Y A D A PALA ++M+
Sbjct: 29 LKLY---------ADDSA-------PALA------IKATME 47
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural
genomics, PSI-2, protein structure initiative; HET: PGE;
1.86A {Staphylococcus aureus subsp}
Length = 282
Score = 27.2 bits (60), Expect = 5.5
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 218 RKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVAR 267
Q K + ++GK+ST + L + D A+VA
Sbjct: 227 TNELLRQHPELKTTINKLTGKISTSEMQR----LNYEADGKGKEPAVVAE 272
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 26.8 bits (60), Expect = 8.1
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 190 HTGHGHPDRMS-LQ--LALTQLESLAELLNERKREAEQ-TQAFKDI 231
G +MS + LT L++ E+++ +R + D+
Sbjct: 235 SPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADL 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.378
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,049,764
Number of extensions: 231540
Number of successful extensions: 550
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 53
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)