RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy480
(283 letters)
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 81.3 bits (200), Expect = 4e-19
Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 34/161 (21%)
Query: 66 LEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSR 125
LE ++ + + + +Y + N +A++V
Sbjct: 75 LEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLT---------------- 118
Query: 126 QNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQ 185
+ + F++++ SS L + KP R ++ L+
Sbjct: 119 ------------------EHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLK 160
Query: 186 DLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQ 226
+L H H DR +Q ++ ++L+ E ++ E
Sbjct: 161 ELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELEL 201
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 78.3 bits (192), Expect = 6e-18
Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 53/222 (23%)
Query: 14 EEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPW 73
EE +L P+ E ++ + +I D+ +A F
Sbjct: 59 REELARLFPNL-PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGP---------- 107
Query: 74 PIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRL 133
+ + ++ ++F + S A+++ + + +K+ F +
Sbjct: 108 ------------AREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQ---------- 145
Query: 134 SFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGH 193
++ + RL L++ +QR ++ L L+ ++ HT
Sbjct: 146 --------------------EAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEG 185
Query: 194 GHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSI 235
G + L A Q + + +NE ++ E + K +
Sbjct: 186 GTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRL 227
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 77.9 bits (191), Expect = 7e-18
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 117 ALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQN-SSMDRLSFFGLMVKPVQ 175
A + +L+ L+ + P F F++ + + ++KP+Q
Sbjct: 93 AQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQ 152
Query: 176 RFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDI 231
R ++ L ++++L +T HPD L+ AL + E L +NE RE E + + I
Sbjct: 153 RVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWI 208
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 74.4 bits (182), Expect = 1e-16
Identities = 17/85 (20%), Positives = 38/85 (44%)
Query: 139 MVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDR 198
++ + F FL ++ + ++KP+QR ++ L L++L T +
Sbjct: 122 VLVKAKTDTAFKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEH 181
Query: 199 MSLQLALTQLESLAELLNERKREAE 223
L +A+ + +A +NE ++ E
Sbjct: 182 YHLDVAIKTMNKVASHINEMQKIHE 206
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 72.5 bits (177), Expect = 8e-16
Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 32/195 (16%)
Query: 45 NWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGII-RLVMCFKSIVLEIYSEFINNFSA 103
N + ++ S IG ++ + + + F +N
Sbjct: 69 NLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPF 128
Query: 104 AMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDR 163
A+++ + KK F + +++ + R R
Sbjct: 129 ALEMIKSRQKKDSRFQTFVQDAESNPLCR------------------------------R 158
Query: 164 LSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAE 223
L ++ +QR ++ L L ++ +T +R ++ A + +N+ +EAE
Sbjct: 159 LQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPTEREKVKKAADHCRQILNFVNQAVKEAE 217
Query: 224 QTQAFKDILKSISGK 238
Q +D + +
Sbjct: 218 NKQRLEDYQRRLDTS 232
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 71.7 bits (175), Expect = 1e-15
Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 31/158 (19%)
Query: 66 LEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSR 125
LE I IYSE+ NN A + K FF++
Sbjct: 77 LEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNHLDACMELS-KLMKDSRYQHFFEAC 135
Query: 126 QNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQ 185
+ ++ G ++ PVQ+ ++ L L
Sbjct: 136 RLLQQMI------------------------------DIAIDGFLLTPVQKICKYPLQLA 165
Query: 186 DLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAE 223
+LL +T H D + AL + ++ + +NERKR E
Sbjct: 166 ELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLE 203
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 64.0 bits (155), Expect = 7e-13
Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 32/148 (21%)
Query: 73 WPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDR 132
P T + ++ + +K +Y + + +A + + + +
Sbjct: 93 GPGATTLYQVFIKYKE-RFLVYGRYCSQVESASKHLDQVATAREDVQMKLE--------- 142
Query: 133 LSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTG 192
+ Q ++ R + L++ P+QR ++ L LQ+L+ HT
Sbjct: 143 ---------------------ECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT- 180
Query: 193 HGHPDRMSLQLALTQLESLAELLNERKR 220
++ +L+LAL + LA+ +NE KR
Sbjct: 181 QDATEKENLRLALDAMRDLAQCVNEVKR 208
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 61.3 bits (148), Expect = 7e-12
Identities = 19/167 (11%), Positives = 45/167 (26%), Gaps = 37/167 (22%)
Query: 66 LEIYSEPWPIGTGIIRLVMCFKSIV----LEIYSEFINNFS--AAMDVARGESKKKPALA 119
+E E G+ + CF+ + + Y + + D + K A
Sbjct: 66 IEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAAL 125
Query: 120 EFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQ 179
+ + L++ PV
Sbjct: 126 YLQSIGEGFKEAV------------------------------QYVLPRLLLAPVYHCLH 155
Query: 180 FILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQ 226
+ L+ L + D+ L+ A+T L ++ + + ++ +
Sbjct: 156 YFELLKQLEEKS-EDQEDKECLKQAITALLNVQSGMEKICSKSLAKR 201
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 58.2 bits (140), Expect = 7e-11
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 152 FLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESL 211
F Q Q +LS ++KPVQR ++ L L+++L ++ H LQ AL+ + +
Sbjct: 124 FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKH-CEGAEDLQEALSSILGI 182
Query: 212 AELLNERKR 220
+ +N+
Sbjct: 183 LKAVNDSMH 191
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 53.6 bits (128), Expect = 2e-09
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 147 PQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALT 206
+ Q S ++KPVQR ++ L L++LL G + ++ L
Sbjct: 110 EHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---IKDGLE 166
Query: 207 QLESLAELLNE 217
+ S+ + N+
Sbjct: 167 VMLSVPKRAND 177
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 416
Score = 30.0 bits (66), Expect = 0.38
Identities = 15/138 (10%), Positives = 38/138 (27%), Gaps = 10/138 (7%)
Query: 96 EFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQS 155
+ ++ + S + S +F +V+ +
Sbjct: 267 TNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFY 326
Query: 156 RQNSSMDRLSFFGLMVK-------PVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQL 208
S +GL V P++R+ + L P ++ ++
Sbjct: 327 SGAYSYPDFRHYGLAVDIYTHFTSPIRRYCD--VVAHRQLAGAIGYEPLSLT-HRDKNKM 383
Query: 209 ESLAELLNERKREAEQTQ 226
+ + +N + R A+
Sbjct: 384 DMICRNINRKHRNAQFAG 401
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
{Thermotoga maritima [TaxId: 2336]}
Length = 173
Score = 27.5 bits (60), Expect = 1.4
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 205 LTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTR 242
LT E++ +L+ A+ + K L+++ G L
Sbjct: 3 LTSAEAVRDLIE-----AKSETSLKLSLRNLKGGLRDF 35
>d2h4oa1 d.368.1.1 (A:2-63) Uncharacterized protein YonK {Bacillus
subtilis [TaxId: 1423]}
Length = 62
Score = 25.1 bits (54), Expect = 2.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 215 LNERKREAEQTQAFKDILKSISGK 238
+ E+ +EAE T FK+IL +GK
Sbjct: 21 VTEQTKEAEYTYDFKEILSEFNGK 44
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.1 bits (57), Expect = 6.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 199 MSLQLALTQLESLAELLNERKREAEQTQAFKDILKS 234
+ LQ LT LE +LL+E K +Q IL S
Sbjct: 432 LRLQ-KLTGLEHE-KLLDEYKELLDQIAELLRILGS 465
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis
[TaxId: 1423]}
Length = 118
Score = 24.8 bits (54), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 196 PDRMSLQLALTQLESLAELLNERKREAEQ 224
R S Q+ +L + LL+E+ R+AEQ
Sbjct: 16 EKRYS-QMTPHELNTEIALLSEKARKAEQ 43
>d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 120
Score = 24.6 bits (53), Expect = 9.8
Identities = 4/74 (5%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 170 MVKPVQRFPQFILFLQDLLNH--------TGHGHPDRMSLQLALTQLESLAELLNERKRE 221
+K + + F + + + + + + + + +L + +
Sbjct: 42 GIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKN 101
Query: 222 AEQTQAFKDILKSI 235
+ ++I+
Sbjct: 102 TDHFVTVEEIVTQY 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.378
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 960,619
Number of extensions: 41126
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 26
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)