BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4800
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 71/106 (66%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
+ HG A L+DEVQTGGG GKFW HEH+ L++ D++TFSKKM GG+F K EF P Y
Sbjct: 289 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPY 348
Query: 64 RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
R+FNTW+GDP K LLL +I+ I E+LL G +LL L L
Sbjct: 349 RIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 394
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
L+ DEVQTG G G W ++ D+ +PDIV F KK Q+ G + V + A VF
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67 ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
+TW G+ ++ + I++ I E L +R + G L
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
L+ DEVQTG G G W ++ D+ +PDIV F KK Q+ G + V + A VF
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67 ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
+TW G+ ++ + I++ I E L +R + G L
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
L+ DEVQTG G G W ++ D+ +PDIV F KK Q+ G + V + A VF
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67 ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
+TW G+ ++ + I++ I E L +R + G L
Sbjct: 325 SRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
L+ DEVQTG G G W ++ D+ +PDIV F KK Q+ G + V + A VF
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67 ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
++W G+ ++ + I++ I E L +R + G L
Sbjct: 325 SRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
HG+ L+ DEV G G GK + ++D++ PDI+T +K + L V ++ Y
Sbjct: 248 HGALLISDEVICGFGRTGKAFGFXNYDVK--PDIITXAKGITSAYLPLSATAVKREIYEA 305
Query: 66 F------------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
F NT+ G+P L ++ I NENL++R + G +LL
Sbjct: 306 FKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQXGSLLL 355
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
L+IDEVQTG G G+F+ ++HF+L+ PD++ +K + GG + ++ + F
Sbjct: 209 LIIDEVQTGIGRTGEFYAYQHFNLK--PDVIALAKGLG-GGVPIGAILAREEVAQSFTPG 265
Query: 67 ---NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGD 100
+T+ G+P ++D + E LL V++ G+
Sbjct: 266 SHGSTFGGNPLACRAGTVVVDEV--EKLLPHVREVGN 300
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
H + L+ DEVQTG G G+ + + H+ + +PD++T +K + GG+ + ++ RV
Sbjct: 216 HNALLIFDEVQTGVGRTGELYAYMHYGV--TPDLLTTAKALG-GGFPVGALLATEECARV 272
Query: 66 F------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL------LNVRLGLGQE 112
T+ G+P + +++ I+ +L+ V++ D +N R GL E
Sbjct: 273 MTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSE 331
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
HG L+ DEVQ+G G G + E + +PD+ TF+K + L G + E +
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62 AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
A + T+ G+P + ++ ENLL + G L + L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
HG L+ DEVQ+G G G + E + +PD+ TF+K + L G + E +
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62 AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
A + T+ G+P + ++ ENLL + G L + L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
HG L+ DEVQ+G G G + E + +PD+ TF+K + L G + E +
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62 AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
A + T+ G+P + ++ ENLL + G L + L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
G+ L++DE+QTG G GK + EHF + PDI+T +K LGG
Sbjct: 219 GALLILDEIQTGMGRTGKRFAFEHFGI--VPDILTLAKA--LGG 258
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
K + + DEVQTG G GK C H++++ PD++ K + G Y +
Sbjct: 243 KKYNVLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKALSGGHYPISAVLANDDIM 300
Query: 64 RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
V +T+ G+P + ++ + NE L + +K G L
Sbjct: 301 LVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 346
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
K + + DEVQTG G GK C H+ ++ PD++ K + G Y +
Sbjct: 224 KKYNVLFVADEVQTGLGRTGKLLCTHHYGVK--PDVILLGKALSGGHYPISAILANDDVM 281
Query: 64 RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTG 99
V +T+ G+P + + + NE L + K G
Sbjct: 282 LVLKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLG 323
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
HG L+ DE Q+G G G + E + +PD+ TF+K + L G + E +
Sbjct: 232 HGIMLIADEAQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62 AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
A + T+ G+P + ++ ENLL + G L + L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG---GYFLKPEFVPQQAYRVF 66
L+ DE+Q G G GKF+ +EH + PDI T +K + G G F+ + V +
Sbjct: 216 LIADEIQCGXGRSGKFFAYEHAQI--LPDIXTSAKALGCGLSVGAFVINQKVASNSLEAG 273
Query: 67 N---TWMGDPGKVLLLKGIIDTIHNENLLDRVQK 97
+ T+ G+P + + + E +L+ V K
Sbjct: 274 DHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNK 307
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----KPEFVP- 59
+G+ + DEVQTG G + EH ++ PD++ +K + GG L + E +
Sbjct: 261 NGAVFVADEVQTGFARTGALFACEHENV--VPDLIVTAKGIA-GGLPLSAVTGRAEIMDG 317
Query: 60 QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108
Q+ + T+ G+P +IDTI ENL+ R + G+ +L+ RLG
Sbjct: 318 PQSGGLGGTYGGNPLACAAALAVIDTIERENLVARARAIGETMLS-RLG 365
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG---GYFLKPEFVPQQA- 62
G L++DE QTG G G + + + +PDI+T SK + G + + ++A
Sbjct: 235 GMLLILDEAQTGVGRTGTMFACQRDGV--TPDILTLSKTLGAGLPLAAIVTSAAIEERAH 292
Query: 63 ---YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
Y + T + DP + ++D + + L+ R GD L
Sbjct: 293 ELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRL 335
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG---GYFLKPEFVPQQA- 62
G L++DE QTG G G + + + +PDI+T SK + G + + ++A
Sbjct: 237 GMLLILDEAQTGVGRTGTMFACQRDGV--TPDILTLSKTLGAGLPLAAIVTSAAIEERAH 294
Query: 63 ---YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
Y + T + DP + ++D + + L+ R GD L
Sbjct: 295 ELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRL 337
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG---GYFLKPEFVPQQA- 62
G L++DE QTG G G + + + +PDI+T SK + G + + ++A
Sbjct: 237 GMLLILDEAQTGVGRTGTMFACQRDGV--TPDILTLSKTLGAGLPLAAIVTSAAIEERAH 294
Query: 63 ---YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
Y + T + DP + ++D + + L+ R GD L
Sbjct: 295 ELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRL 337
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG---GYFLKPEFVPQQA- 62
G L++DE QTG G G + + + +PDI+T SK + G + + ++A
Sbjct: 236 GMLLILDEAQTGVGRTGTMFACQRDGV--TPDILTLSKTLGAGLPLAAIVTSAAIEERAH 293
Query: 63 ---YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
Y + T + DP + ++D + + L+ R GD L
Sbjct: 294 ELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRL 336
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
H + DE+QTG G++ ++ ++ PDIV K + G Y +
Sbjct: 256 HQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKALSGGLYPVSAVLCDDDIMLT 313
Query: 66 ------FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
F+T+ G+P + ++ + ENL + K G IL N
Sbjct: 314 IKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKP--E 56
K +G L+ DEVQ G G GK + E+F+ PD++T +K M +G + +
Sbjct: 243 KKYGILLVDDEVQMGLGRTGKLFAIENFN--TVPDVITLAKALGGGIMPIGATIFRKDLD 300
Query: 57 FVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
F P NT+ G+ + +ID + ++LL V + G I GL +
Sbjct: 301 FKPGMHS---NTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQGLADD 351
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
+ + L+ DEVQ G G GK + ++ + + PD++T +K + GG + V ++A +
Sbjct: 204 YDALLVFDEVQCGMGRTGKLFAYQKYGV--VPDVLTTAKGLG-GGVPIGAVIVNERANVL 260
Query: 66 F-----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
T+ G+P +I + E L+ V++ G+ L+
Sbjct: 261 EPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLM 303
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF-LKPEFVPQQAYRVF 66
+++DEV TG G GK + EH +++ PD++ K + GGY + F + Y+ F
Sbjct: 248 MIVDEVATGFGRTGKMFACEHENVQ--PDLMAAGKGIT-GGYLPIAVTFATEDIYKAF 302
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF-LKPEFVPQQAYRVF 66
+++DEV TG G GK + EH +++ PD++ K + GGY + F + Y+ F
Sbjct: 248 MIVDEVATGFGRTGKMFACEHENVQ--PDLMAAGKGIT-GGYLPIAVTFATEDIYKAF 302
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 32.3 bits (72), Expect = 0.070, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ K + G L ++
Sbjct: 239 GILLIADEIATGFGATGKLFACEHAEI--APDILCLGKALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SNGEAGCFMHGPTFMGNP 314
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
H + DE+QTG G++ ++ ++ PDIV K + G Y +
Sbjct: 219 HQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKALSGGLYPVSAVLCDDDIMLT 276
Query: 66 F------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
+T+ G+P + ++ + ENL + K G IL N
Sbjct: 277 IKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 321
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
H + DE+QTG G++ ++ ++ PDIV K + G Y +
Sbjct: 256 HQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKALSGGLYPVSAVLCDDDIMLT 313
Query: 66 F------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
+T+ G+P + ++ + ENL + K G IL N
Sbjct: 314 IKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
H + DE+QTG G++ ++ ++ PDIV K + G Y +
Sbjct: 256 HQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKALSGGLYPVSAVLCDDDIMLT 313
Query: 66 F------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
+T+ G+P + ++ + ENL + K G IL N
Sbjct: 314 IKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF-LKPEFVPQQAYR 64
H L+ DEV TG G G + +H+ LE PDI+T + K Y L V + ++
Sbjct: 253 HDILLVADEVVTGFGRLGTXFGSDHYGLE--PDIITIAXKGLTSAYAPLSGSIVSDKVWK 310
Query: 65 VFNTWMGDPGKV 76
V + G +
Sbjct: 311 VLEQGTDENGPI 322
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ K + G L ++
Sbjct: 239 GILLIADEIATGFGRTGKLFACEHAEI--APDILCLGKALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SDGEAGCFMHGPTFMGNP 314
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ K + G L ++
Sbjct: 239 GILLIADEIATGFGRTGKLFACEHAEI--APDILCLGKALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SNGEAGCFMHGPTFMGNP 314
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ K + G L ++
Sbjct: 239 GILLIADEIATGFGRTGKLFACEHAEI--APDILCLGKALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SNGEAGCFMHGPTFMGNP 314
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
+ + L+ DEVQ G G GK + ++ + + PD++T +K + GG + V ++A +
Sbjct: 216 YDALLVFDEVQCGXGRTGKLFAYQKYGV--VPDVLTTAKGLG-GGVPIGAVIVNERANVL 272
Query: 66 -----FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
T+ G+P +I + E L+ V++ G+ L
Sbjct: 273 EPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYL 314
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG 49
H + DEV TG G CG+++ E PDI+TF+K + G
Sbjct: 254 HDILYISDEVVTGFGRCGEWFASEKV-FGVVPDIITFAKGVTSG 296
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQ------AY 63
L+ DEV G G G+++ H+HF + PD+ T +K + G + FV ++ A
Sbjct: 256 LVADEVICGFGRTGEWFGHQHFGFQ--PDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG 313
Query: 64 RVFN---TWMGDPGKVLLLKGIIDTIHNENLLDRVQ 96
FN T+ G P + + + +E ++ RV+
Sbjct: 314 GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVK 349
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ + G L ++
Sbjct: 239 GILLIADEIATGFGKTGKLFACEHAEI--APDILCLGXALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SNGEAGCFMHGPTFMGNP 314
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ + G L ++
Sbjct: 239 GILLIADEIATGFGRTGKLFACEHAEI--APDILCLGXALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SNGEAGCFMHGPTFMGNP 314
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ + G L ++
Sbjct: 239 GILLIADEIATGFGRTGKLFACEHAEI--APDILCLGXALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SNGEAGCFMHGPTFMGNP 314
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G L+ DE+ TG G GK + EH ++ +PDI+ + G L ++
Sbjct: 239 GILLIADEIATGFGRTGKLFACEHAEI--APDILCLGXALTGGTMTLSATLTTREVAETI 296
Query: 67 N-----------TWMGDP 73
+ T+MG+P
Sbjct: 297 SNGEAGCFMHGPTFMGNP 314
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 21 PCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVL 77
PC + H L D+ T+ K Y L PE + F+ W+ +P ++L
Sbjct: 162 PCKYSFLDNHKKLTPRRDVPTYPK------YLLSPETIEALRKPTFDVWLWEPNEML 212
>pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM
RHODOBACTER Sphaeroides
Length = 249
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 42 FSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIH 87
F +K++ G+F PE P + N W ++ L + + T+H
Sbjct: 190 FEEKLEAAGFFFPPEKAPGXKLNLRNXW----ARLPLTRADVQTLH 231
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT----FSKKMQLGGYFLKPEFVPQ-QAYR 64
+ DEVQTG G + EH ++ PD++ + + L + E +
Sbjct: 264 FIADEVQTGFARTGAMFACEHEGID--PDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSG 321
Query: 65 VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108
+ T+ G+P I+TI +E L+ R Q+ I+ + RLG
Sbjct: 322 LGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKD-RLG 364
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS 43
+G + DEVQTG G ++ EH + PDIVT +
Sbjct: 258 NGVVFIADEVQTGFARTGAWFASEHEGI--VPDIVTMA 293
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G + DEV +G G CG + +PDI K + G L Q Y
Sbjct: 225 GIIFIADEVMSGMGRCGSPLALSRWS-GVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETV 283
Query: 67 N----------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
T+ G P V ++D + E+L ++ G LL
Sbjct: 284 MGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLL 330
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
L+ DEV TG G G + +H+ ++ PD++T + K Y
Sbjct: 258 LVADEVVTGFGRLGTXFGSDHYGIK--PDLITIAXKGLTSAY 297
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 56 EFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHN 88
EF +Q RV T G+P KVLL K D +
Sbjct: 69 EFFKKQGKRVITTHKGEPRKVLLKKLSFDRLAR 101
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDI----VTFSKKMQLGGYFLKPEFVP 59
+ HG ++ DEV+ G G+ C EH PDI + L E +
Sbjct: 245 RAHGILVVCDEVKVGLARSGRLHCFEHEGF--VPDILVLGKGLGGGLPLSAVIAPAEILD 302
Query: 60 QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117
+ T G+P +++TI ++L ++ G +L R GL + + P
Sbjct: 303 CASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLL---RDGLSELAKRHP 357
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG 49
+ K G + DEVQ+G G+++ +H + PDI+T +K + G
Sbjct: 255 WAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV--VPDIITMAKGIAGG 300
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDI----VTFSKKMQLGGYFLKPEFVP 59
+ HG ++ DEV+ G G+ C EH PDI + L E +
Sbjct: 232 RAHGILVVCDEVKVGLARSGRLHCFEHEGF--VPDILVLGKGLGGGLPLSAVIAPAEILD 289
Query: 60 QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117
+ T G+P +++TI ++L ++ G +L R GL + + P
Sbjct: 290 CASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLL---RDGLSELAKRHP 344
>pdb|2GU0|A Chain A, Crystal Structure Of Human Rotavirus Nsp2 (Group C Bristol
Strain)
pdb|2GU0|B Chain B, Crystal Structure Of Human Rotavirus Nsp2 (Group C Bristol
Strain)
Length = 312
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 78 LLKGIIDTIHNENLLDRVQKTGDIL-LNVRLGL 109
++K ++ H ENLL R++ DIL NV+L +
Sbjct: 101 IVKTVVQVRHLENLLCRIKDVNDILNANVKLRV 133
>pdb|3C1D|A Chain A, X-Ray Crystal Structure Of Recx
pdb|3C1D|B Chain B, X-Ray Crystal Structure Of Recx
Length = 159
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 26 WCHEHFDLEESPDIVTFSKKMQLGGY 51
WCHEH L++S + F GY
Sbjct: 55 WCHEHGYLDDSRFVARFIASRSRKGY 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,204,340
Number of Sequences: 62578
Number of extensions: 178064
Number of successful extensions: 518
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 53
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)