Query psy4800
Match_columns 119
No_of_seqs 203 out of 1482
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 18:05:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4992 ArgD Ornithine/acetylo 100.0 3.1E-38 6.7E-43 240.5 10.1 114 1-118 212-331 (404)
2 COG0160 GabT 4-aminobutyrate a 100.0 1.2E-36 2.6E-41 236.0 10.1 114 1-117 250-368 (447)
3 COG0161 BioA Adenosylmethionin 100.0 1.7E-34 3.6E-39 223.5 9.1 114 1-117 243-368 (449)
4 KOG1402|consensus 100.0 7.8E-34 1.7E-38 211.3 7.6 116 1-119 235-357 (427)
5 KOG1404|consensus 100.0 1.2E-33 2.7E-38 213.5 5.7 115 1-118 240-361 (442)
6 PRK06938 diaminobutyrate--2-ox 100.0 6.5E-33 1.4E-37 217.5 9.8 114 1-117 259-377 (464)
7 PRK07482 hypothetical protein; 100.0 1.1E-32 2.4E-37 216.0 10.0 114 1-117 248-375 (461)
8 PRK06931 diaminobutyrate--2-ox 100.0 1.4E-32 3E-37 215.4 9.5 114 1-117 253-371 (459)
9 PRK07483 hypothetical protein; 100.0 1.8E-32 4E-37 213.9 9.1 114 1-117 228-352 (443)
10 PRK05965 hypothetical protein; 100.0 2.5E-32 5.3E-37 214.0 9.5 112 1-116 243-368 (459)
11 PRK07678 aminotransferase; Val 100.0 3.3E-32 7.3E-37 212.8 8.9 113 1-116 241-366 (451)
12 PF00202 Aminotran_3: Aminotra 100.0 7E-32 1.5E-36 204.4 10.2 113 1-116 205-323 (339)
13 TIGR03372 putres_am_tran putre 100.0 5.6E-32 1.2E-36 211.1 9.8 112 1-115 252-372 (442)
14 TIGR00699 GABAtrns_euk 4-amino 100.0 1.1E-31 2.4E-36 210.4 10.7 115 1-115 279-394 (464)
15 PRK06943 adenosylmethionine--8 100.0 8.6E-32 1.9E-36 210.6 9.4 112 1-116 250-374 (453)
16 PRK11522 putrescine--2-oxoglut 100.0 8.6E-32 1.9E-36 210.9 9.2 112 1-115 259-379 (459)
17 PRK07030 adenosylmethionine--8 100.0 1.4E-31 3.1E-36 210.0 9.7 112 1-116 243-368 (466)
18 PRK07481 hypothetical protein; 100.0 1E-31 2.2E-36 210.0 8.6 114 1-117 241-368 (449)
19 PLN02760 4-aminobutyrate:pyruv 100.0 2.1E-31 4.5E-36 210.7 9.4 113 1-117 288-414 (504)
20 PRK12403 putative aminotransfe 100.0 2.4E-31 5.2E-36 208.4 9.5 114 1-117 250-375 (460)
21 PRK07480 putative aminotransfe 100.0 3.7E-31 7.9E-36 207.2 9.0 113 1-117 247-371 (456)
22 PRK06062 hypothetical protein; 100.0 3.7E-31 8E-36 207.0 9.0 113 1-116 242-364 (451)
23 PRK08742 adenosylmethionine--8 100.0 4.7E-31 1E-35 207.4 9.4 113 1-117 265-390 (472)
24 PRK06082 4-aminobutyrate amino 100.0 6.7E-31 1.4E-35 205.9 10.2 113 1-117 256-376 (459)
25 PRK06105 aminotransferase; Pro 100.0 4.3E-31 9.4E-36 207.0 8.7 113 1-117 246-372 (460)
26 TIGR00709 dat 2,4-diaminobutyr 100.0 1.5E-30 3.3E-35 203.0 10.2 114 1-117 234-352 (442)
27 PRK07036 hypothetical protein; 100.0 2E-30 4.3E-35 203.6 9.5 112 1-116 248-374 (466)
28 PRK06916 adenosylmethionine--8 100.0 1.9E-30 4.2E-35 203.3 9.3 112 1-116 252-377 (460)
29 PRK06058 4-aminobutyrate amino 100.0 2.5E-30 5.4E-35 201.8 9.8 113 1-116 247-365 (443)
30 PRK06917 hypothetical protein; 100.0 2.4E-30 5.3E-35 202.2 9.6 113 1-116 228-351 (447)
31 PRK05639 4-aminobutyrate amino 100.0 2.8E-30 6.1E-35 202.3 9.7 113 1-116 250-367 (457)
32 PRK06148 hypothetical protein; 100.0 4.8E-30 1E-34 215.8 10.5 114 1-117 812-933 (1013)
33 PRK08297 L-lysine aminotransfe 100.0 4.3E-30 9.3E-35 200.6 9.5 115 1-117 253-373 (443)
34 PRK03715 argD acetylornithine 100.0 6.2E-30 1.4E-34 197.1 10.3 111 1-114 207-322 (395)
35 PRK06173 adenosylmethionine--8 100.0 9.6E-30 2.1E-34 198.0 10.4 112 1-116 235-358 (429)
36 PRK07986 adenosylmethionine--8 100.0 6.8E-30 1.5E-34 198.8 8.6 112 1-116 233-356 (428)
37 PRK05630 adenosylmethionine--8 100.0 1E-29 2.2E-34 197.4 9.5 112 1-116 229-353 (422)
38 PRK12389 glutamate-1-semialdeh 100.0 1.1E-29 2.4E-34 197.4 9.7 113 1-117 228-349 (428)
39 PRK06149 hypothetical protein; 100.0 1.6E-29 3.5E-34 212.0 10.2 113 1-116 772-892 (972)
40 PRK13360 omega amino acid--pyr 100.0 2.7E-29 5.8E-34 196.1 9.2 112 1-116 243-368 (442)
41 PLN02974 adenosylmethionine-8- 100.0 3.2E-29 6.9E-34 206.5 9.6 114 1-117 613-743 (817)
42 PRK09221 beta alanine--pyruvat 100.0 7.4E-29 1.6E-33 193.7 9.0 112 1-116 246-371 (445)
43 KOG1401|consensus 100.0 1.1E-28 2.4E-33 187.4 8.4 115 1-118 234-357 (433)
44 PRK08593 4-aminobutyrate amino 100.0 2.8E-28 6E-33 190.5 10.1 113 1-116 235-353 (445)
45 TIGR03251 LAT_fam L-lysine 6-t 100.0 4.7E-28 1E-32 188.5 10.0 114 1-116 246-365 (431)
46 PRK06541 hypothetical protein; 100.0 5.6E-28 1.2E-32 189.5 10.2 112 1-116 249-371 (460)
47 PLN02482 glutamate-1-semialdeh 100.0 3.5E-28 7.6E-33 191.2 9.0 109 1-113 274-391 (474)
48 PRK00615 glutamate-1-semialdeh 99.9 1.3E-27 2.8E-32 186.3 9.9 108 1-112 229-345 (433)
49 PRK05769 4-aminobutyrate amino 99.9 1.3E-27 2.8E-32 186.6 9.5 112 1-116 249-365 (441)
50 PRK09264 diaminobutyrate--2-ox 99.9 3.4E-27 7.3E-32 183.3 10.1 114 1-116 226-345 (425)
51 TIGR02407 ectoine_ectB diamino 99.9 3.3E-27 7.1E-32 182.8 9.7 113 1-115 222-340 (412)
52 TIGR00508 bioA adenosylmethion 99.9 4.4E-27 9.5E-32 182.9 10.2 111 1-115 236-358 (427)
53 PRK08117 4-aminobutyrate amino 99.9 4.7E-27 1E-31 182.7 9.8 114 1-117 235-354 (433)
54 PRK07495 4-aminobutyrate amino 99.9 4.6E-27 9.9E-32 182.8 9.6 114 1-117 226-345 (425)
55 TIGR03246 arg_catab_astC succi 99.9 7.2E-27 1.6E-31 179.9 10.1 113 1-116 207-325 (397)
56 PRK09792 4-aminobutyrate trans 99.9 9.5E-27 2.1E-31 180.7 10.7 114 1-117 226-345 (421)
57 PRK04013 argD acetylornithine/ 99.9 1.3E-26 2.9E-31 177.2 8.8 94 1-98 190-285 (364)
58 KOG1403|consensus 99.9 1.4E-26 3.1E-31 171.4 8.3 113 3-118 239-360 (452)
59 PLN00144 acetylornithine trans 99.9 2.7E-26 5.8E-31 176.2 10.2 114 1-117 195-314 (382)
60 PRK06777 4-aminobutyrate amino 99.9 3.4E-26 7.5E-31 177.6 10.3 113 1-116 226-344 (421)
61 PRK05964 adenosylmethionine--8 99.9 2.6E-26 5.7E-31 178.1 9.2 112 1-116 228-352 (423)
62 PRK04612 argD acetylornithine 99.9 8.7E-26 1.9E-30 174.8 10.5 113 1-116 215-333 (408)
63 PRK07046 aminotransferase; Val 99.9 6.2E-26 1.3E-30 177.7 9.7 111 1-116 246-371 (453)
64 KOG1405|consensus 99.9 4.5E-26 9.8E-31 171.3 7.7 118 1-118 299-416 (484)
65 TIGR00700 GABAtrnsam 4-aminobu 99.9 1.6E-25 3.5E-30 173.6 10.2 113 1-116 225-343 (420)
66 PRK12381 bifunctional succinyl 99.9 4.4E-25 9.6E-30 170.4 10.2 113 1-116 211-329 (406)
67 PRK08360 4-aminobutyrate amino 99.9 5.6E-25 1.2E-29 171.9 10.3 113 1-116 232-350 (443)
68 PRK06209 glutamate-1-semialdeh 99.9 6E-25 1.3E-29 171.1 9.5 112 1-116 211-336 (431)
69 PLN02624 ornithine-delta-amino 99.9 8.6E-25 1.9E-29 172.0 10.2 113 1-116 252-371 (474)
70 PRK06918 4-aminobutyrate amino 99.9 3E-24 6.6E-29 167.9 10.4 113 1-116 247-365 (451)
71 COG0001 HemL Glutamate-1-semia 99.9 2.3E-24 4.9E-29 166.0 8.0 110 1-114 228-347 (432)
72 PRK00062 glutamate-1-semialdeh 99.9 3.2E-24 7E-29 166.7 7.9 113 1-117 225-346 (426)
73 PRK03244 argD acetylornithine 99.9 2.3E-23 5E-28 159.8 9.9 110 1-115 211-326 (398)
74 TIGR00713 hemL glutamate-1-sem 99.9 1.3E-23 2.8E-28 162.6 8.4 112 1-116 223-343 (423)
75 PRK01278 argD acetylornithine 99.9 3.8E-23 8.3E-28 158.3 9.6 112 1-115 203-320 (389)
76 PRK04073 rocD ornithine--oxo-a 99.9 2.1E-22 4.6E-27 154.8 10.1 107 1-109 214-326 (396)
77 TIGR01885 Orn_aminotrans ornit 99.9 2.7E-22 5.9E-27 154.3 8.9 108 1-110 214-327 (401)
78 PRK02936 argD acetylornithine 99.9 8.3E-22 1.8E-26 150.1 10.3 113 1-116 195-313 (377)
79 PRK04260 acetylornithine amino 99.9 1.7E-21 3.7E-26 148.7 10.0 113 1-116 193-311 (375)
80 PRK05093 argD bifunctional N-s 99.8 5E-21 1.1E-25 147.5 10.2 112 1-115 212-329 (403)
81 PTZ00125 ornithine aminotransf 99.8 8.7E-21 1.9E-25 145.4 9.7 112 1-115 206-324 (400)
82 PRK08088 4-aminobutyrate amino 99.8 1.8E-20 3.8E-25 145.6 10.4 113 1-116 227-345 (425)
83 PRK02627 acetylornithine amino 99.8 2.1E-20 4.6E-25 142.9 9.9 113 1-116 210-328 (396)
84 cd00610 OAT_like Acetyl ornith 99.8 2.4E-20 5.1E-25 143.0 9.1 111 1-114 219-337 (413)
85 PRK00854 rocD ornithine--oxo-a 99.8 7.2E-20 1.6E-24 140.6 9.5 107 1-110 215-328 (401)
86 COG0156 BioF 7-keto-8-aminopel 99.7 4.9E-18 1.1E-22 130.7 8.7 106 1-108 195-312 (388)
87 PLN02822 serine palmitoyltrans 99.7 2.5E-17 5.5E-22 130.0 8.1 108 1-109 269-387 (481)
88 PLN03227 serine palmitoyltrans 99.7 1.2E-16 2.7E-21 123.2 8.6 109 1-114 162-284 (392)
89 PRK09064 5-aminolevulinate syn 99.7 2.5E-16 5.5E-21 121.2 9.0 107 1-109 202-319 (407)
90 TIGR00707 argD acetylornithine 99.7 7.1E-16 1.5E-20 117.2 10.3 110 1-113 198-313 (379)
91 PLN02955 8-amino-7-oxononanoat 99.7 3E-16 6.4E-21 123.5 7.9 103 1-105 273-386 (476)
92 TIGR01821 5aminolev_synth 5-am 99.6 1.4E-15 3E-20 117.1 9.6 107 1-109 201-318 (402)
93 KOG1359|consensus 99.6 1.7E-15 3.7E-20 112.4 8.0 114 1-116 217-347 (417)
94 PRK13393 5-aminolevulinate syn 99.6 2.5E-15 5.4E-20 115.9 9.1 107 1-109 201-318 (406)
95 KOG1360|consensus 99.5 1.2E-13 2.7E-18 106.0 7.1 107 1-109 327-446 (570)
96 PRK13392 5-aminolevulinate syn 99.5 2.5E-13 5.4E-18 104.9 8.8 107 1-109 202-319 (410)
97 PRK07505 hypothetical protein; 99.4 5.5E-13 1.2E-17 102.8 8.0 89 1-91 203-304 (402)
98 PLN02483 serine palmitoyltrans 99.4 3.8E-12 8.3E-17 100.9 8.7 107 1-109 264-388 (489)
99 PRK07179 hypothetical protein; 99.3 1.7E-11 3.7E-16 94.6 9.1 107 1-109 205-322 (407)
100 PRK05958 8-amino-7-oxononanoat 99.3 2.7E-11 5.9E-16 91.9 9.1 108 1-109 192-310 (385)
101 TIGR01825 gly_Cac_T_rel pyrido 99.2 5.8E-11 1.3E-15 90.5 8.9 107 1-109 187-304 (385)
102 PRK05937 8-amino-7-oxononanoat 99.2 5.9E-11 1.3E-15 90.7 7.8 106 1-108 167-283 (370)
103 PRK13580 serine hydroxymethylt 99.2 8.7E-11 1.9E-15 93.1 7.5 106 1-109 242-358 (493)
104 KOG1357|consensus 99.2 8.4E-11 1.8E-15 91.4 6.8 107 1-109 300-424 (519)
105 TIGR01822 2am3keto_CoA 2-amino 99.1 5.4E-10 1.2E-14 85.4 8.9 107 1-109 194-312 (393)
106 TIGR00858 bioF 8-amino-7-oxono 99.1 5.5E-10 1.2E-14 83.8 8.8 108 1-109 170-288 (360)
107 PRK06939 2-amino-3-ketobutyrat 99.1 1.1E-09 2.3E-14 83.5 9.1 107 1-109 198-316 (397)
108 PLN03226 serine hydroxymethylt 99.0 1.9E-09 4.1E-14 85.4 7.5 104 1-109 205-333 (475)
109 TIGR03576 pyridox_MJ0158 pyrid 98.9 2.5E-09 5.5E-14 81.5 6.3 101 1-109 162-273 (346)
110 PRK03317 histidinol-phosphate 98.8 9E-09 1.9E-13 78.4 6.2 105 1-108 184-297 (368)
111 PRK13034 serine hydroxymethylt 98.8 1.1E-08 2.3E-13 79.8 6.2 105 1-109 190-305 (416)
112 cd06454 KBL_like KBL_like; thi 98.8 4E-08 8.6E-13 73.7 8.2 107 1-109 156-273 (349)
113 cd00609 AAT_like Aspartate ami 98.6 8.5E-08 1.8E-12 71.2 4.5 109 1-110 159-279 (350)
114 cd00613 GDC-P Glycine cleavage 98.5 3.8E-07 8.2E-12 69.8 7.2 103 1-110 183-328 (398)
115 TIGR02539 SepCysS Sep-tRNA:Cys 98.5 5.4E-07 1.2E-11 68.9 7.8 103 1-110 170-288 (370)
116 PTZ00094 serine hydroxymethylt 98.5 6.4E-07 1.4E-11 70.5 7.9 105 1-109 204-322 (452)
117 KOG1358|consensus 98.4 3.7E-07 8E-12 70.4 4.6 107 1-109 257-375 (467)
118 cd06502 TA_like Low-specificit 98.4 2.5E-07 5.5E-12 69.1 2.6 105 1-109 153-267 (338)
119 PRK00011 glyA serine hydroxyme 98.3 1.6E-06 3.5E-11 67.0 6.9 104 1-109 187-302 (416)
120 PRK06225 aspartate aminotransf 98.3 8.4E-07 1.8E-11 67.9 5.1 104 1-108 184-296 (380)
121 cd00616 AHBA_syn 3-amino-5-hyd 98.3 1.8E-06 3.9E-11 64.9 5.7 101 1-109 127-251 (352)
122 cd00615 Orn_deC_like Ornithine 98.3 1.3E-06 2.9E-11 64.9 4.5 106 1-108 177-294 (294)
123 TIGR01140 L_thr_O3P_dcar L-thr 98.2 4.3E-06 9.2E-11 63.0 7.2 107 1-114 152-265 (330)
124 TIGR02006 IscS cysteine desulf 98.2 1E-05 2.2E-10 62.6 8.5 102 1-109 166-282 (402)
125 PF00155 Aminotran_1_2: Aminot 98.2 3.7E-06 8E-11 63.5 5.6 106 2-109 176-295 (363)
126 PRK08153 histidinol-phosphate 98.2 5.3E-06 1.2E-10 63.4 6.4 97 6-110 186-290 (369)
127 PRK07324 transaminase; Validat 98.2 5E-06 1.1E-10 63.8 6.2 82 1-84 180-268 (373)
128 PRK09331 Sep-tRNA:Cys-tRNA syn 98.2 8.3E-06 1.8E-10 62.8 7.5 103 1-109 182-299 (387)
129 PRK06108 aspartate aminotransf 98.2 3.5E-06 7.5E-11 64.2 5.2 108 1-109 185-305 (382)
130 TIGR01814 kynureninase kynuren 98.1 1.3E-05 2.9E-10 61.9 7.5 102 1-109 195-328 (406)
131 TIGR03235 DNA_S_dndA cysteine 98.1 1.7E-05 3.8E-10 59.9 7.9 102 1-109 162-280 (353)
132 PRK07682 hypothetical protein; 98.1 6.8E-06 1.5E-10 62.8 5.5 109 1-109 181-299 (378)
133 cd00378 SHMT Serine-glycine hy 98.1 7.2E-06 1.6E-10 63.0 5.3 102 1-109 183-298 (402)
134 TIGR03301 PhnW-AepZ 2-aminoeth 98.0 1.7E-05 3.6E-10 59.5 6.6 102 1-109 149-278 (355)
135 PRK02948 cysteine desulfurase; 98.0 2.3E-05 5.1E-10 59.8 7.4 102 1-109 162-276 (381)
136 PRK00950 histidinol-phosphate 98.0 1.8E-05 4E-10 59.9 5.8 100 1-107 182-287 (361)
137 cd06453 SufS_like Cysteine des 98.0 5.7E-05 1.2E-09 57.3 8.3 102 1-109 163-294 (373)
138 TIGR03392 FeS_syn_CsdA cystein 97.9 6.3E-05 1.4E-09 57.8 8.2 102 1-109 181-312 (398)
139 PRK13520 L-tyrosine decarboxyl 97.9 3.9E-05 8.3E-10 58.1 6.4 103 1-109 175-302 (371)
140 cd00614 CGS_like CGS_like: Cys 97.9 9.5E-06 2.1E-10 62.2 3.1 99 1-109 149-257 (369)
141 PRK06460 hypothetical protein; 97.9 2.2E-05 4.7E-10 60.6 5.0 98 1-108 154-260 (376)
142 TIGR01977 am_tr_V_EF2568 cyste 97.9 0.00011 2.3E-09 55.9 8.4 102 1-109 161-289 (376)
143 TIGR01141 hisC histidinol-phos 97.9 2.8E-05 6E-10 58.6 5.1 103 2-109 167-280 (346)
144 TIGR03402 FeS_nifS cysteine de 97.8 0.00014 3.1E-09 55.5 8.8 100 1-108 160-273 (379)
145 PRK09295 bifunctional cysteine 97.8 9.6E-05 2.1E-09 57.1 7.9 102 1-109 188-320 (406)
146 TIGR01976 am_tr_V_VC1184 cyste 97.8 9.3E-05 2E-09 56.7 7.7 102 1-109 180-313 (397)
147 PRK05664 threonine-phosphate d 97.8 4.2E-05 9.2E-10 57.7 5.5 102 2-109 152-262 (330)
148 PRK05764 aspartate aminotransf 97.8 4.2E-05 9.1E-10 58.6 5.3 108 1-109 191-311 (393)
149 TIGR02326 transamin_PhnW 2-ami 97.8 9.7E-05 2.1E-09 56.1 7.1 102 1-109 153-283 (363)
150 TIGR01325 O_suc_HS_sulf O-succ 97.8 3.1E-05 6.8E-10 59.7 4.0 97 1-108 163-269 (380)
151 PRK02731 histidinol-phosphate 97.7 9.4E-05 2E-09 56.2 6.4 97 6-108 185-294 (367)
152 PRK07777 aminotransferase; Val 97.7 6.8E-05 1.5E-09 57.5 5.5 108 1-109 186-305 (387)
153 TIGR03812 tyr_de_CO2_Arch tyro 97.7 9.7E-05 2.1E-09 56.0 6.3 108 1-109 177-307 (373)
154 PRK10874 cysteine sulfinate de 97.7 0.0003 6.5E-09 54.2 8.8 102 1-109 184-315 (401)
155 PRK10534 L-threonine aldolase; 97.7 4.7E-05 1E-09 57.1 4.2 102 1-109 154-266 (333)
156 PRK07550 hypothetical protein; 97.7 8.1E-05 1.7E-09 57.1 5.3 108 1-109 190-309 (386)
157 PLN00175 aminotransferase fami 97.7 9.9E-05 2.2E-09 57.4 5.7 108 1-109 214-332 (413)
158 PRK09082 methionine aminotrans 97.6 9.3E-05 2E-09 56.8 5.1 108 1-109 190-309 (386)
159 PLN02721 threonine aldolase 97.6 9.2E-05 2E-09 55.6 5.0 104 1-109 165-277 (353)
160 cd06451 AGAT_like Alanine-glyo 97.6 0.00015 3.3E-09 54.7 6.1 102 1-109 148-278 (356)
161 PLN02509 cystathionine beta-ly 97.6 0.00013 2.7E-09 58.1 5.6 97 1-108 241-348 (464)
162 PRK09276 LL-diaminopimelate am 97.6 9.5E-05 2.1E-09 56.6 4.6 109 1-109 193-312 (385)
163 TIGR03540 DapC_direct LL-diami 97.6 9.3E-05 2E-09 56.6 4.3 109 1-109 191-310 (383)
164 PRK13479 2-aminoethylphosphona 97.6 0.00053 1.1E-08 52.1 8.4 102 1-109 155-284 (368)
165 TIGR01328 met_gam_lyase methio 97.6 9.6E-05 2.1E-09 57.3 4.4 97 1-108 168-276 (391)
166 PRK05942 aspartate aminotransf 97.6 0.00011 2.4E-09 56.5 4.6 109 1-109 197-316 (394)
167 PRK03158 histidinol-phosphate 97.6 0.00021 4.4E-09 54.2 5.9 96 6-106 182-285 (359)
168 PRK06290 aspartate aminotransf 97.6 0.00016 3.6E-09 56.2 5.4 108 1-109 206-323 (410)
169 PRK07681 aspartate aminotransf 97.6 0.00014 3.1E-09 56.0 5.1 109 1-109 193-312 (399)
170 PRK08361 aspartate aminotransf 97.6 0.00016 3.4E-09 55.6 5.3 106 1-108 193-311 (391)
171 PRK06767 methionine gamma-lyas 97.5 5.9E-05 1.3E-09 58.3 2.9 97 1-109 170-278 (386)
172 PRK14012 cysteine desulfurase; 97.5 0.00063 1.4E-08 52.6 8.6 102 1-109 168-284 (404)
173 PRK08249 cystathionine gamma-s 97.5 9.6E-05 2.1E-09 57.5 4.0 98 1-108 173-279 (398)
174 PRK06425 histidinol-phosphate 97.5 0.00035 7.6E-09 52.7 6.9 105 1-109 149-262 (332)
175 PRK08960 hypothetical protein; 97.5 0.00027 5.9E-09 54.2 6.3 104 1-108 192-307 (387)
176 TIGR01324 cysta_beta_ly_B cyst 97.5 0.00018 3.9E-09 55.6 5.3 97 1-108 159-265 (377)
177 PRK08912 hypothetical protein; 97.5 0.00015 3.2E-09 55.7 4.8 108 1-109 186-305 (387)
178 PRK08175 aminotransferase; Val 97.5 0.00015 3.3E-09 55.9 4.8 108 1-109 191-310 (395)
179 TIGR03537 DapC succinyldiamino 97.5 0.00019 4E-09 54.4 5.2 106 1-109 163-278 (350)
180 PRK08068 transaminase; Reviewe 97.5 0.0002 4.3E-09 55.0 5.3 108 1-109 194-313 (389)
181 PRK07309 aromatic amino acid a 97.5 0.00019 4.1E-09 55.3 5.1 109 1-109 193-310 (391)
182 PRK06348 aspartate aminotransf 97.5 0.00018 3.9E-09 55.3 4.6 106 1-108 189-306 (384)
183 TIGR03588 PseC UDP-4-keto-6-de 97.5 0.00028 6E-09 54.1 5.7 103 1-109 142-278 (380)
184 PLN02855 Bifunctional selenocy 97.5 0.00055 1.2E-08 53.2 7.3 102 1-109 197-328 (424)
185 cd01494 AAT_I Aspartate aminot 97.5 9.7E-05 2.1E-09 49.2 2.7 43 1-47 116-160 (170)
186 TIGR01979 sufS cysteine desulf 97.5 0.0008 1.7E-08 51.7 8.1 102 1-109 183-314 (403)
187 TIGR03403 nifS_epsilon cystein 97.5 0.0011 2.5E-08 50.6 8.9 101 1-109 164-278 (382)
188 PRK03321 putative aminotransfe 97.5 0.00023 4.9E-09 53.8 4.9 80 2-84 170-260 (352)
189 PLN02651 cysteine desulfurase 97.4 0.00073 1.6E-08 51.5 7.4 101 1-108 162-277 (364)
190 PRK07568 aspartate aminotransf 97.4 0.00042 9.2E-09 53.1 6.1 106 1-108 189-307 (397)
191 cd06452 SepCysS Sep-tRNA:Cys-t 97.4 0.0003 6.4E-09 53.5 5.2 102 1-109 163-280 (361)
192 PLN02242 methionine gamma-lyas 97.4 0.0002 4.3E-09 56.1 4.2 98 1-109 187-297 (418)
193 PRK08056 threonine-phosphate d 97.4 0.0006 1.3E-08 51.8 6.7 103 1-109 169-283 (356)
194 PRK07865 N-succinyldiaminopime 97.4 0.00036 7.7E-09 53.1 5.4 107 1-108 175-294 (364)
195 PRK07683 aminotransferase A; V 97.4 0.00058 1.3E-08 52.5 6.3 107 1-109 188-306 (387)
196 PRK14809 histidinol-phosphate 97.4 0.00042 9.2E-09 52.6 5.5 94 7-106 186-285 (357)
197 PRK09148 aminotransferase; Val 97.4 0.00031 6.6E-09 54.5 4.6 106 1-108 192-310 (405)
198 TIGR03539 DapC_actino succinyl 97.3 0.00033 7.2E-09 53.2 4.7 108 1-108 169-288 (357)
199 PRK08574 cystathionine gamma-s 97.3 0.00021 4.4E-09 55.4 3.6 97 1-108 161-268 (385)
200 PRK06959 putative threonine-ph 97.3 0.00042 9.1E-09 52.6 5.2 101 3-109 159-268 (339)
201 PRK07503 methionine gamma-lyas 97.3 0.00048 1E-08 53.7 5.5 98 1-108 174-282 (403)
202 PRK07504 O-succinylhomoserine 97.3 0.00026 5.6E-09 55.1 3.9 97 1-108 174-281 (398)
203 PRK05387 histidinol-phosphate 97.3 0.00062 1.4E-08 51.3 5.9 104 2-109 169-283 (353)
204 TIGR01264 tyr_amTase_E tyrosin 97.3 0.00082 1.8E-08 51.8 6.2 108 1-109 195-319 (401)
205 TIGR02080 O_succ_thio_ly O-suc 97.3 0.00045 9.8E-09 53.5 4.7 97 1-108 160-267 (382)
206 cd06450 DOPA_deC_like DOPA dec 97.3 0.00097 2.1E-08 50.0 6.3 91 1-109 172-267 (345)
207 COG0079 HisC Histidinol-phosph 97.2 0.00084 1.8E-08 51.7 6.0 100 3-109 174-282 (356)
208 PTZ00433 tyrosine aminotransfe 97.2 0.00095 2.1E-08 51.8 6.2 107 1-108 204-327 (412)
209 PRK13238 tnaA tryptophanase/L- 97.2 0.0019 4E-08 51.3 7.9 114 1-116 205-340 (460)
210 PRK07337 aminotransferase; Val 97.2 0.00091 2E-08 51.3 5.9 105 1-109 190-306 (388)
211 PRK07811 cystathionine gamma-s 97.2 0.00045 9.7E-09 53.5 4.2 98 1-108 170-277 (388)
212 PRK07582 cystathionine gamma-l 97.2 0.00047 1E-08 53.0 4.3 98 1-109 156-264 (366)
213 PLN02409 serine--glyoxylate am 97.2 0.0011 2.4E-08 51.4 6.3 100 3-109 165-292 (401)
214 PRK08363 alanine aminotransfer 97.2 0.0011 2.4E-08 51.1 6.2 106 1-108 193-314 (398)
215 PRK06358 threonine-phosphate d 97.2 0.0017 3.7E-08 49.4 7.1 105 1-108 168-283 (354)
216 PRK05957 aspartate aminotransf 97.2 0.0016 3.4E-08 50.2 6.9 19 1-19 187-205 (389)
217 PRK12414 putative aminotransfe 97.2 0.00067 1.5E-08 52.1 4.8 107 1-109 189-307 (384)
218 COG0436 Aspartate/tyrosine/aro 97.1 0.00061 1.3E-08 53.0 4.3 109 1-109 190-312 (393)
219 PRK07810 O-succinylhomoserine 97.1 0.00044 9.6E-09 53.9 3.5 98 1-108 179-286 (403)
220 PRK06234 methionine gamma-lyas 97.1 0.0008 1.7E-08 52.3 4.8 98 1-108 173-283 (400)
221 PRK05968 hypothetical protein; 97.1 0.00067 1.5E-08 52.6 4.1 96 1-108 171-278 (389)
222 PRK11706 TDP-4-oxo-6-deoxy-D-g 97.1 0.0012 2.6E-08 50.7 5.5 101 1-109 140-270 (375)
223 PRK08247 cystathionine gamma-s 97.1 0.00064 1.4E-08 52.2 3.9 97 1-108 160-267 (366)
224 PRK06084 O-acetylhomoserine am 97.1 0.0013 2.7E-08 51.8 5.5 98 1-108 167-307 (425)
225 PLN02187 rooty/superroot1 97.0 0.0025 5.5E-08 50.5 7.1 19 1-19 231-249 (462)
226 TIGR01265 tyr_nico_aTase tyros 97.0 0.0028 6.1E-08 49.0 7.1 106 1-108 196-320 (403)
227 PRK07366 succinyldiaminopimela 97.0 0.0014 3E-08 50.3 5.3 19 1-19 192-210 (388)
228 PRK06207 aspartate aminotransf 97.0 0.003 6.5E-08 49.0 7.0 19 1-19 205-223 (405)
229 PRK07590 L,L-diaminopimelate a 97.0 0.0018 3.9E-08 50.2 5.7 19 1-19 203-221 (409)
230 PRK05994 O-acetylhomoserine am 97.0 0.0027 6E-08 49.9 6.7 39 1-47 172-212 (427)
231 PLN02368 alanine transaminase 97.0 0.0014 2.9E-08 51.3 5.0 109 1-109 237-377 (407)
232 PRK08636 aspartate aminotransf 97.0 0.0018 4E-08 50.0 5.6 19 1-19 202-220 (403)
233 PRK09105 putative aminotransfe 97.0 0.0031 6.7E-08 48.4 6.8 95 6-109 196-302 (370)
234 COG0075 Serine-pyruvate aminot 97.0 0.0056 1.2E-07 47.7 8.0 102 1-109 155-284 (383)
235 PRK09147 succinyldiaminopimela 96.9 0.0025 5.4E-08 49.1 6.1 19 1-19 193-211 (396)
236 TIGR01437 selA_rel uncharacter 96.9 0.0041 8.9E-08 47.7 7.3 100 1-109 173-282 (363)
237 PRK15481 transcriptional regul 96.9 0.0031 6.7E-08 49.2 6.4 80 1-84 239-327 (431)
238 KOG2862|consensus 96.9 0.0073 1.6E-07 46.0 7.9 100 1-110 167-302 (385)
239 COG1168 MalY Bifunctional PLP- 96.9 0.0044 9.5E-08 48.0 6.7 107 1-109 185-307 (388)
240 PRK08776 cystathionine gamma-s 96.9 0.0017 3.6E-08 50.8 4.6 98 1-108 169-276 (405)
241 TIGR02379 ECA_wecE TDP-4-keto- 96.9 0.0065 1.4E-07 46.9 7.7 101 1-109 140-271 (376)
242 PRK15407 lipopolysaccharide bi 96.9 0.0043 9.3E-08 49.0 6.8 41 67-109 288-328 (438)
243 PRK07269 cystathionine gamma-s 96.8 0.0011 2.5E-08 51.0 3.3 98 1-108 160-267 (364)
244 PRK01688 histidinol-phosphate 96.8 0.0031 6.8E-08 47.9 5.6 101 3-109 174-285 (351)
245 TIGR03538 DapC_gpp succinyldia 96.8 0.0029 6.3E-08 48.6 5.5 108 1-108 192-315 (393)
246 PRK14808 histidinol-phosphate 96.8 0.0032 6.8E-08 47.7 5.5 100 5-109 165-272 (335)
247 PRK07392 threonine-phosphate d 96.8 0.0062 1.3E-07 46.3 7.0 80 1-84 172-260 (360)
248 PRK01533 histidinol-phosphate 96.8 0.0028 6.2E-08 48.6 5.0 100 2-108 179-287 (366)
249 TIGR00474 selA seryl-tRNA(sec) 96.7 0.0049 1.1E-07 49.0 6.3 49 1-54 239-300 (454)
250 PRK04311 selenocysteine syntha 96.7 0.0052 1.1E-07 49.0 6.4 52 1-54 244-305 (464)
251 PRK06107 aspartate aminotransf 96.7 0.0061 1.3E-07 47.1 6.7 106 1-108 193-313 (402)
252 PRK08354 putative aminotransfe 96.7 0.0061 1.3E-07 45.6 6.5 46 1-54 144-196 (311)
253 TIGR01329 cysta_beta_ly_E cyst 96.7 0.0018 3.9E-08 50.0 3.7 96 1-107 155-261 (378)
254 PRK11658 UDP-4-amino-4-deoxy-L 96.7 0.0031 6.8E-08 48.6 4.9 101 1-109 142-274 (379)
255 PRK06855 aminotransferase; Val 96.7 0.0033 7.1E-08 49.3 5.1 19 1-19 198-216 (433)
256 PLN02656 tyrosine transaminase 96.7 0.005 1.1E-07 47.8 6.0 19 1-19 196-214 (409)
257 PRK14807 histidinol-phosphate 96.7 0.0049 1.1E-07 46.8 5.8 102 1-108 172-281 (351)
258 PRK08133 O-succinylhomoserine 96.7 0.002 4.4E-08 49.9 3.7 98 1-108 170-276 (390)
259 TIGR03531 selenium_SpcS O-phos 96.6 0.0061 1.3E-07 48.4 6.1 109 1-115 229-350 (444)
260 PTZ00376 aspartate aminotransf 96.6 0.0044 9.6E-08 48.0 5.3 19 1-19 203-221 (404)
261 cd00617 Tnase_like Tryptophana 96.6 0.0081 1.8E-07 47.5 6.5 105 1-109 180-310 (431)
262 PF00266 Aminotran_5: Aminotra 96.5 0.0094 2E-07 45.4 6.2 99 1-109 163-294 (371)
263 PRK07049 methionine gamma-lyas 96.5 0.0034 7.5E-08 49.3 3.8 93 6-108 209-310 (427)
264 PF01041 DegT_DnrJ_EryC1: DegT 96.4 0.013 2.9E-07 44.8 6.7 102 1-110 134-261 (363)
265 PLN03026 histidinol-phosphate 96.4 0.011 2.3E-07 45.5 6.0 102 2-109 200-310 (380)
266 PRK08045 cystathionine gamma-s 96.4 0.0099 2.2E-07 46.1 5.7 98 1-108 161-268 (386)
267 COG1104 NifS Cysteine sulfinat 96.3 0.028 6.1E-07 43.9 8.1 100 1-109 165-279 (386)
268 PLN02376 1-aminocyclopropane-1 96.3 0.011 2.3E-07 47.4 6.0 19 1-19 226-244 (496)
269 PRK04366 glycine dehydrogenase 96.3 0.028 6.1E-07 44.8 8.2 103 1-109 232-368 (481)
270 PRK09257 aromatic amino acid a 96.3 0.012 2.6E-07 45.4 5.8 20 1-20 199-218 (396)
271 PRK07671 cystathionine beta-ly 96.3 0.0064 1.4E-07 47.0 4.3 98 1-108 158-265 (377)
272 PRK03967 histidinol-phosphate 96.3 0.0082 1.8E-07 45.4 4.7 76 2-84 165-248 (337)
273 TIGR03542 DAPAT_plant LL-diami 96.3 0.011 2.4E-07 45.7 5.5 19 1-19 200-218 (402)
274 PRK04781 histidinol-phosphate 96.2 0.016 3.4E-07 44.4 6.2 99 6-109 183-292 (364)
275 TIGR01326 OAH_OAS_sulfhy OAH/O 96.2 0.01 2.2E-07 46.5 5.1 39 1-47 166-206 (418)
276 PLN02397 aspartate transaminas 96.2 0.012 2.6E-07 46.0 5.4 19 1-19 221-239 (423)
277 PRK05839 hypothetical protein; 96.2 0.017 3.7E-07 44.2 6.2 19 1-19 182-200 (374)
278 PRK04635 histidinol-phosphate 96.1 0.013 2.9E-07 44.5 5.2 98 7-109 178-286 (354)
279 PTZ00377 alanine aminotransfer 96.1 0.011 2.4E-07 46.9 4.9 19 1-19 245-263 (481)
280 PRK08861 cystathionine gamma-s 96.1 0.0087 1.9E-07 46.6 4.2 97 1-108 162-269 (388)
281 PRK09265 aminotransferase AlaT 96.1 0.011 2.5E-07 45.6 4.8 19 1-19 195-213 (404)
282 PRK06702 O-acetylhomoserine am 96.0 0.014 3E-07 46.2 4.9 98 1-108 171-309 (432)
283 PLN00143 tyrosine/nicotianamin 96.0 0.018 3.9E-07 44.7 5.4 19 1-19 197-215 (409)
284 PRK06176 cystathionine gamma-s 95.9 0.0065 1.4E-07 47.0 2.7 39 1-47 158-198 (380)
285 PRK07050 cystathionine beta-ly 95.9 0.0084 1.8E-07 46.6 3.3 98 1-108 174-281 (394)
286 PLN02450 1-aminocyclopropane-1 95.9 0.021 4.5E-07 45.4 5.5 19 1-19 218-236 (468)
287 PLN02271 serine hydroxymethylt 95.9 0.043 9.2E-07 45.0 7.2 104 1-109 320-454 (586)
288 PRK07812 O-acetylhomoserine am 95.8 0.021 4.6E-07 45.2 5.3 39 1-47 179-219 (436)
289 COG0520 csdA Selenocysteine ly 95.8 0.074 1.6E-06 41.7 8.2 102 1-109 186-319 (405)
290 PF01276 OKR_DC_1: Orn/Lys/Arg 95.8 0.085 1.8E-06 41.7 8.4 105 1-109 191-317 (417)
291 PRK13237 tyrosine phenol-lyase 95.8 0.072 1.6E-06 42.6 8.1 105 1-109 205-335 (460)
292 PRK13355 bifunctional HTH-doma 95.7 0.017 3.7E-07 46.3 4.5 19 1-19 308-326 (517)
293 COG1921 SelA Selenocysteine sy 95.7 0.024 5.2E-07 44.3 5.1 86 1-90 181-273 (395)
294 PLN00145 tyrosine/nicotianamin 95.7 0.048 1E-06 42.8 6.8 19 1-19 217-235 (430)
295 PRK07908 hypothetical protein; 95.6 0.037 8E-07 41.8 5.9 102 2-109 164-276 (349)
296 PRK08248 O-acetylhomoserine am 95.5 0.026 5.7E-07 44.5 4.9 39 1-47 173-213 (431)
297 PRK05166 histidinol-phosphate 95.4 0.043 9.3E-07 41.9 5.4 99 6-108 190-301 (371)
298 PRK02610 histidinol-phosphate 95.3 0.057 1.2E-06 41.3 6.1 73 6-84 198-278 (374)
299 PLN02672 methionine S-methyltr 95.2 0.053 1.2E-06 47.4 6.1 19 1-19 856-874 (1082)
300 PRK05967 cystathionine beta-ly 95.1 0.014 2.9E-07 45.7 2.1 97 1-108 173-279 (395)
301 PRK04870 histidinol-phosphate 95.1 0.047 1E-06 41.3 5.0 101 2-109 178-287 (356)
302 PRK05367 glycine dehydrogenase 95.1 0.13 2.9E-06 44.5 8.2 102 1-109 664-793 (954)
303 PRK09440 avtA valine--pyruvate 95.1 0.069 1.5E-06 41.3 5.8 17 1-17 206-222 (416)
304 KOG0257|consensus 94.9 0.041 8.9E-07 43.2 4.2 107 1-109 199-326 (420)
305 PRK09028 cystathionine beta-ly 94.7 0.03 6.5E-07 43.7 3.1 97 1-108 170-276 (394)
306 TIGR01366 serC_3 phosphoserine 94.5 0.19 4.1E-06 38.6 7.0 101 1-110 149-281 (361)
307 PF00464 SHMT: Serine hydroxym 94.5 0.048 1E-06 42.8 3.6 104 1-109 191-319 (399)
308 PLN02231 alanine transaminase 94.5 0.064 1.4E-06 43.5 4.5 19 1-19 298-316 (534)
309 PRK08064 cystathionine beta-ly 94.4 0.054 1.2E-06 42.0 3.7 98 1-108 162-269 (390)
310 PRK05939 hypothetical protein; 94.2 0.11 2.4E-06 40.5 5.2 39 1-47 155-195 (397)
311 PRK06434 cystathionine gamma-l 94.0 0.08 1.7E-06 41.2 4.0 96 1-108 172-277 (384)
312 cd00611 PSAT_like Phosphoserin 94.0 0.29 6.2E-06 37.4 6.9 102 1-109 157-278 (355)
313 PLN02607 1-aminocyclopropane-1 93.9 0.19 4.2E-06 39.7 6.0 18 1-18 227-244 (447)
314 PF03841 SelA: L-seryl-tRNA se 93.8 0.042 9.2E-07 42.6 2.1 85 1-88 164-261 (367)
315 TIGR02617 tnaA_trp_ase tryptop 93.5 0.36 7.8E-06 38.7 6.8 106 1-109 211-344 (467)
316 PRK00451 glycine dehydrogenase 93.4 0.32 7E-06 38.0 6.5 29 81-109 340-371 (447)
317 PRK06836 aspartate aminotransf 93.4 0.13 2.9E-06 39.6 4.2 19 1-19 195-219 (394)
318 COG0399 WecE Predicted pyridox 93.1 0.5 1.1E-05 36.9 7.0 99 1-109 143-268 (374)
319 TIGR02618 tyr_phenol_ly tyrosi 93.1 0.3 6.5E-06 39.0 5.9 104 1-109 198-328 (450)
320 PRK02769 histidine decarboxyla 92.9 0.74 1.6E-05 35.8 7.7 106 1-109 184-311 (380)
321 PRK08637 hypothetical protein; 92.7 0.4 8.6E-06 36.9 5.9 14 6-19 183-196 (388)
322 PRK08134 O-acetylhomoserine am 92.1 0.4 8.7E-06 37.9 5.4 17 1-17 173-189 (433)
323 PLN02414 glycine dehydrogenase 92.0 1 2.2E-05 39.5 8.0 39 1-47 690-732 (993)
324 COG1167 ARO8 Transcriptional r 91.6 0.64 1.4E-05 37.0 6.1 99 1-103 254-360 (459)
325 PRK15029 arginine decarboxylas 91.1 0.59 1.3E-05 39.7 5.6 108 1-110 335-465 (755)
326 KOG0633|consensus 91.0 0.65 1.4E-05 35.0 5.1 39 7-51 191-234 (375)
327 COG2873 MET17 O-acetylhomoseri 90.8 0.92 2E-05 35.6 6.0 39 1-47 171-211 (426)
328 PRK05613 O-acetylhomoserine am 90.8 0.65 1.4E-05 36.8 5.4 45 1-53 179-230 (437)
329 TIGR03801 asp_4_decarbox aspar 90.6 0.36 7.8E-06 39.2 3.9 19 1-19 267-287 (521)
330 PLN02724 Molybdenum cofactor s 90.2 1.5 3.1E-05 37.5 7.3 40 71-110 318-360 (805)
331 COG0112 GlyA Glycine/serine hy 89.7 1.3 2.9E-05 34.8 6.2 103 1-109 188-303 (413)
332 KOG0256|consensus 89.6 1.6 3.5E-05 34.6 6.5 51 2-52 254-311 (471)
333 PF01053 Cys_Met_Meta_PP: Cys/ 88.8 0.32 7E-06 38.0 2.2 96 1-108 164-273 (386)
334 TIGR01364 serC_1 phosphoserine 88.7 2.6 5.7E-05 32.3 7.1 100 1-109 149-270 (349)
335 TIGR03799 NOD_PanD_pyr putativ 88.5 3.2 7E-05 33.8 7.8 108 1-109 289-419 (522)
336 COG0626 MetC Cystathionine bet 88.3 0.51 1.1E-05 37.1 3.0 97 1-108 173-281 (396)
337 PRK03080 phosphoserine aminotr 88.1 2 4.3E-05 33.1 6.2 35 75-109 253-291 (378)
338 TIGR01365 serC_2 phosphoserine 87.9 2.3 4.9E-05 33.2 6.4 100 2-110 149-283 (374)
339 COG1448 TyrB Aspartate/tyrosin 86.6 0.79 1.7E-05 35.9 3.2 108 2-109 200-332 (396)
340 PRK08114 cystathionine beta-ly 85.6 1.1 2.3E-05 35.2 3.6 97 1-108 171-279 (395)
341 KOG1368|consensus 85.5 0.31 6.8E-06 37.2 0.5 99 1-108 182-293 (384)
342 PRK09275 aspartate aminotransf 85.1 1.8 4E-05 35.3 4.7 18 2-19 269-288 (527)
343 PRK12566 glycine dehydrogenase 84.0 9.5 0.00021 33.5 8.7 40 1-47 665-707 (954)
344 PLN02880 tyrosine decarboxylas 80.9 1.9 4E-05 34.8 3.3 46 1-47 263-310 (490)
345 PLN03032 serine decarboxylase; 80.6 9.5 0.00021 29.7 7.0 108 1-109 185-314 (374)
346 PRK12462 phosphoserine aminotr 79.6 15 0.00032 28.6 7.7 100 2-110 163-285 (364)
347 KOG0634|consensus 76.5 12 0.00026 30.0 6.4 97 1-98 231-354 (472)
348 COG1103 Archaea-specific pyrid 74.6 26 0.00056 26.8 7.4 40 1-47 180-221 (382)
349 KOG2467|consensus 73.9 11 0.00024 29.8 5.6 104 1-109 211-340 (477)
350 TIGR00461 gcvP glycine dehydro 72.2 26 0.00057 30.8 7.9 101 1-108 652-784 (939)
351 COG3977 Alanine-alpha-ketoisov 69.4 20 0.00044 27.8 6.0 16 1-16 206-221 (417)
352 COG0076 GadB Glutamate decarbo 67.9 45 0.00097 26.8 8.0 105 1-109 231-361 (460)
353 PLN02452 phosphoserine transam 64.0 45 0.00097 25.9 7.1 96 7-109 170-285 (365)
354 PF04851 ResIII: Type III rest 61.6 4.6 0.0001 26.8 1.2 14 6-19 146-159 (184)
355 PRK13578 ornithine decarboxyla 60.8 22 0.00049 30.3 5.3 18 90-107 419-436 (720)
356 PRK15399 lysine decarboxylase 59.0 30 0.00066 29.5 5.7 44 66-110 397-443 (713)
357 PF03190 Thioredox_DsbH: Prote 58.6 17 0.00036 25.2 3.5 58 48-106 100-162 (163)
358 KOG0053|consensus 57.9 8.4 0.00018 30.6 2.2 39 1-47 186-226 (409)
359 COG2008 GLY1 Threonine aldolas 57.5 14 0.00031 28.6 3.3 16 1-16 157-172 (342)
360 PRK05355 3-phosphoserine/phosp 53.2 48 0.001 25.4 5.7 39 71-109 239-281 (360)
361 PF05707 Zot: Zonular occluden 52.2 9.8 0.00021 26.5 1.6 14 6-19 79-92 (193)
362 KOG1549|consensus 49.4 74 0.0016 25.5 6.2 40 1-47 205-246 (428)
363 KOG0259|consensus 49.2 8.3 0.00018 30.6 0.9 17 1-17 226-242 (447)
364 KOG0352|consensus 48.5 7.7 0.00017 31.4 0.6 35 8-52 143-178 (641)
365 PF00282 Pyridoxal_deC: Pyrido 48.5 89 0.0019 24.2 6.5 108 1-109 218-354 (373)
366 cd00046 DEXDc DEAD-like helica 47.2 9 0.00019 23.6 0.7 12 6-17 103-114 (144)
367 PLN02590 probable tyrosine dec 47.0 1.6E+02 0.0034 24.3 7.9 45 1-46 311-357 (539)
368 COG1061 SSL2 DNA or RNA helica 46.1 10 0.00022 30.1 1.0 13 7-19 147-159 (442)
369 PF01212 Beta_elim_lyase: Beta 45.0 5.5 0.00012 29.9 -0.6 106 1-110 152-271 (290)
370 PRK15400 lysine decarboxylase 44.1 46 0.001 28.4 4.6 45 65-110 396-443 (714)
371 PF02562 PhoH: PhoH-like prote 41.4 13 0.00029 26.6 0.9 11 7-17 120-130 (205)
372 COG0352 ThiE Thiamine monophos 40.6 14 0.00031 26.6 1.0 14 1-14 59-72 (211)
373 PF00270 DEAD: DEAD/DEAH box h 40.0 12 0.00026 24.6 0.5 11 7-17 120-130 (169)
374 PF02078 Synapsin: Synapsin, N 39.9 12 0.00025 24.1 0.4 16 3-18 3-18 (105)
375 COG0542 clpA ATP-binding subun 39.1 14 0.00031 31.7 0.9 16 7-22 263-280 (786)
376 PF05889 SLA_LP_auto_ag: Solub 39.1 55 0.0012 25.9 4.0 16 1-16 179-194 (389)
377 PF13401 AAA_22: AAA domain; P 38.0 15 0.00032 23.1 0.7 13 5-17 85-98 (131)
378 COG5599 PTP2 Protein tyrosine 36.7 13 0.00029 28.0 0.3 12 18-29 228-239 (302)
379 smart00489 DEXDc3 DEAD-like he 36.2 19 0.00042 26.8 1.1 11 7-17 237-247 (289)
380 smart00488 DEXDc2 DEAD-like he 36.2 19 0.00042 26.8 1.1 11 7-17 237-247 (289)
381 PRK12787 fliX flagellar assemb 34.4 1.3E+02 0.0027 20.4 4.7 33 78-110 52-85 (138)
382 smart00487 DEXDc DEAD-like hel 33.7 18 0.0004 23.7 0.6 9 9-17 132-140 (201)
383 PF13173 AAA_14: AAA domain 33.6 21 0.00047 22.8 0.9 12 6-17 61-72 (128)
384 PRK12333 nucleoside triphospha 32.1 1.7E+02 0.0036 21.1 5.3 42 77-118 34-97 (204)
385 PF01078 Mg_chelatase: Magnesi 31.3 39 0.00084 24.3 2.0 16 1-16 101-116 (206)
386 TIGR00604 rad3 DNA repair heli 30.8 26 0.00057 29.5 1.2 11 7-17 221-231 (705)
387 KOG1412|consensus 30.7 70 0.0015 25.0 3.3 40 4-47 208-256 (410)
388 COG1111 MPH1 ERCC4-like helica 29.8 25 0.00053 28.9 0.8 17 8-24 133-149 (542)
389 PF06786 UPF0253: Uncharacteri 29.7 1.2E+02 0.0026 17.6 3.9 34 73-106 24-58 (66)
390 PHA00350 putative assembly pro 29.5 29 0.00062 27.5 1.1 14 6-19 81-94 (399)
391 TIGR00161 conserved hypothetic 29.3 1.6E+02 0.0035 21.4 4.9 19 70-88 180-198 (238)
392 PRK09458 pspB phage shock prot 28.5 1.3E+02 0.0028 18.2 3.6 26 90-115 42-71 (75)
393 COG4050 Uncharacterized protei 27.9 39 0.00085 22.4 1.4 23 2-24 81-103 (152)
394 KOG1720|consensus 27.7 23 0.00051 25.7 0.3 10 18-27 157-166 (225)
395 PF08946 Osmo_CC: Osmosensory 27.4 1.1E+02 0.0025 16.6 3.0 24 93-116 22-45 (46)
396 PF15205 PLAC9: Placenta-speci 25.8 1.5E+02 0.0033 17.5 4.9 36 79-114 23-60 (74)
397 PHA02931 hypothetical protein; 25.8 20 0.00043 20.5 -0.2 14 4-17 30-43 (72)
398 TIGR02881 spore_V_K stage V sp 25.2 39 0.00085 24.5 1.1 14 4-17 103-116 (261)
399 cd00268 DEADc DEAD-box helicas 24.9 34 0.00074 23.3 0.8 10 8-17 145-154 (203)
400 KOG4266|consensus 24.8 41 0.00089 28.7 1.3 11 36-46 379-389 (1033)
401 PF05621 TniB: Bacterial TniB 24.8 33 0.00071 26.2 0.7 10 9-18 148-157 (302)
402 PF08967 DUF1884: Domain of un 24.7 43 0.00092 20.6 1.0 15 30-46 23-37 (85)
403 PRK10874 cysteine sulfinate de 24.5 1.7E+02 0.0038 22.3 4.7 17 98-114 300-316 (401)
404 PHA00012 I assembly protein 23.9 54 0.0012 25.6 1.7 15 5-19 80-94 (361)
405 PRK04964 hypothetical protein; 23.8 1.6E+02 0.0035 17.1 3.7 34 73-106 24-58 (66)
406 COG0497 RecN ATPase involved i 23.7 43 0.00093 27.8 1.2 14 9-22 456-470 (557)
407 COG1938 Archaeal enzymes of AT 23.5 3E+02 0.0065 20.4 5.4 18 70-87 183-200 (244)
408 KOG4476|consensus 23.5 47 0.001 24.5 1.3 18 5-22 45-62 (248)
409 COG5037 TOS9 Gluconate transpo 23.5 47 0.001 24.5 1.3 18 5-22 45-62 (248)
410 PRK10536 hypothetical protein; 23.2 45 0.00097 24.9 1.1 11 7-17 177-187 (262)
411 PRK09694 helicase Cas3; Provis 23.2 42 0.0009 29.4 1.1 11 7-17 440-450 (878)
412 TIGR00162 conserved hypothetic 23.2 2.6E+02 0.0056 19.6 4.9 19 69-87 123-141 (188)
413 PF14483 Cut8_M: Cut8 dimerisa 23.1 38 0.00082 17.5 0.5 17 100-116 13-29 (38)
414 PF10384 Scm3: Centromere prot 22.8 1.1E+02 0.0024 17.4 2.5 25 91-115 3-27 (58)
415 smart00382 AAA ATPases associa 22.6 49 0.0011 20.0 1.1 14 4-17 75-89 (148)
416 cd08538 SAM_PNT-ESE-2-like Ste 22.6 75 0.0016 19.2 1.8 30 81-110 43-72 (78)
417 KOG3895|consensus 22.6 40 0.00086 26.7 0.8 18 2-19 84-101 (488)
418 PRK10265 chaperone-modulator p 22.5 2.1E+02 0.0045 17.9 5.0 33 66-100 60-92 (101)
419 PRK04424 fatty acid biosynthes 22.5 1.6E+02 0.0034 20.5 3.7 34 77-110 36-69 (185)
420 TIGR00348 hsdR type I site-spe 22.4 41 0.00089 28.3 0.9 11 7-17 366-376 (667)
421 COG1698 Uncharacterized protei 22.4 2.1E+02 0.0046 17.9 4.0 38 72-109 53-91 (93)
422 KOG1749|consensus 21.9 38 0.00083 22.4 0.5 13 13-25 98-111 (143)
423 TIGR00201 comF comF family pro 21.9 46 0.00099 23.1 0.9 10 8-17 154-163 (190)
424 TIGR03158 cas3_cyano CRISPR-as 21.6 46 0.001 25.5 1.0 11 7-17 146-156 (357)
425 KOG1132|consensus 21.6 48 0.001 29.1 1.1 11 7-17 248-258 (945)
426 PF13872 AAA_34: P-loop contai 21.6 48 0.001 25.3 1.0 14 4-17 170-183 (303)
427 PF05496 RuvB_N: Holliday junc 21.5 57 0.0012 24.0 1.4 11 6-16 101-111 (233)
428 PTZ00424 helicase 45; Provisio 21.5 40 0.00088 25.7 0.6 10 8-17 172-181 (401)
429 PF02340 PRRSV_Env: PRRSV puta 21.4 42 0.00091 24.3 0.6 12 36-47 65-78 (234)
430 PLN02820 3-methylcrotonyl-CoA 21.2 59 0.0013 27.0 1.6 49 1-53 395-457 (569)
431 TIGR00580 mfd transcription-re 21.2 83 0.0018 27.7 2.5 33 8-44 575-607 (926)
432 PTZ00276 biotin/lipoate protei 21.2 65 0.0014 23.5 1.6 25 6-30 32-56 (245)
433 TIGR00603 rad25 DNA repair hel 21.1 47 0.001 28.5 1.0 9 9-17 378-386 (732)
434 PRK11747 dinG ATP-dependent DN 21.1 49 0.0011 28.0 1.1 10 8-17 248-257 (697)
435 PF09848 DUF2075: Uncharacteri 20.7 44 0.00096 25.5 0.7 9 9-17 86-94 (352)
436 PF03123 CAT_RBD: CAT RNA bind 20.5 51 0.0011 18.8 0.7 11 37-47 20-30 (59)
437 TIGR00643 recG ATP-dependent D 20.4 79 0.0017 26.3 2.1 10 8-17 359-368 (630)
438 PRK06512 thiamine-phosphate py 20.1 55 0.0012 23.5 1.1 14 1-14 65-78 (221)
439 PRK10917 ATP-dependent DNA hel 20.1 91 0.002 26.3 2.5 33 8-44 385-417 (681)
No 1
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-38 Score=240.48 Aligned_cols=114 Identities=29% Similarity=0.452 Sum_probs=105.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccccc------ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~------~~~~~~~~T~~~~p~ 74 (119)
+||++||+|||+||||||+||||++|++||+|++ |||+|++|+| +||+|++..+.. ..+..|+|||+|||+
T Consensus 212 ~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~--PDI~tlaK~L-gGG~PigA~la~~~~~~~~~~G~HgSTfGGNpL 288 (404)
T COG4992 212 ELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVE--PDILTLAKAL-GGGFPIGAMLATEEIASAFTPGDHGSTFGGNPL 288 (404)
T ss_pred HHHHHhCeEEEEeccccCCCccchHHHHHHhCCC--CCEEEeeccc-cCCccceeeEEchhhhhcCCCCcccCCCCcCHH
Confidence 5899999999999999999999999999999999 9999999999 688888765432 356789999999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS 118 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~ 118 (119)
+|+++.++|+++.++++.+++++.|++|+++|+++..+|| +++
T Consensus 289 acAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~-~v~ 331 (404)
T COG4992 289 ACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYP-LVK 331 (404)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCC-cee
Confidence 9999999999999999999999999999999999999999 443
No 2
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=235.95 Aligned_cols=114 Identities=35% Similarity=0.477 Sum_probs=105.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~ 75 (119)
++|+|||++||+|||||||||||++|++|++|++ |||+|+||+| +||+|++. ++++..+..+.+||+|||++
T Consensus 250 ~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~--PDivt~aK~i-g~G~Pl~avv~r~ei~~~~~g~~~~Tf~GNpva 326 (447)
T COG0160 250 KLCREHGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLAKSL-GGGLPLSAVVGRAEIMDWPPGGHGGTFGGNPVA 326 (447)
T ss_pred HHHHHcCCEEEEeccccCCCccccchhhhhcCCC--CCEEEecccc-cCCCceeEEeccHHhcccCCcccCCCCCcCHHH
Confidence 4899999999999999999999999999999998 9999999999 57888764 35555678899999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
|++++++|++|+++++.+|+.++|++++++|++++++||.|-
T Consensus 327 ~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig 368 (447)
T COG0160 327 CAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIG 368 (447)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCcee
Confidence 999999999999999999999999999999999999999764
No 3
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.7e-34 Score=223.50 Aligned_cols=114 Identities=29% Similarity=0.390 Sum_probs=102.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc----------ccc--ccccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE----------FVP--QQAYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~----------~~~--~~~~~~~~T 68 (119)
++|++||+|||+|||.|||||||++|++|++|+. |||+|+||+| +|||.|.+. +.+ ....+|+.|
T Consensus 243 ~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~--PDi~~~aKGL-T~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~T 319 (449)
T COG0161 243 EICDKYGILLIADEVATGFGRTGKMFACEHAGIV--PDILCLAKGL-TGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHT 319 (449)
T ss_pred HHHHHcCcEEEeecceeCCCcCchhhhhhhcCCC--CCeeeecccc-cccchhhHhHhhhHHHHHHHhcccCCeeccCCc
Confidence 5899999999999999999999999999999998 9999999999 999987532 222 234568899
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
|+|||++||+|+++|++++++++.+++++++.+|+++|+++..++|.|.
T Consensus 320 YsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vg 368 (449)
T COG0161 320 YSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVG 368 (449)
T ss_pred cccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 9999999999999999999999999999999999999999777778774
No 4
>KOG1402|consensus
Probab=100.00 E-value=7.8e-34 Score=211.26 Aligned_cols=116 Identities=24% Similarity=0.291 Sum_probs=106.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-------cccccccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-------FVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-------~~~~~~~~~~~T~~~~p 73 (119)
+||++|++++|+||||||+||||++++++|.++. |||+.|||+| +||++|-+. +....+..|+|||+|||
T Consensus 235 eLCtkynvl~I~DEvQTGl~RTGk~la~d~env~--PDivilgKal-SGG~~Pvsavl~~~~im~~~~pgeHgsTyggNp 311 (427)
T KOG1402|consen 235 ELCTKYNVLLIADEVQTGLARTGKLLACDYENVR--PDIVILGKAL-SGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNP 311 (427)
T ss_pred HHHHhhcEEEEehhhhhcccccCcEEEeehhhcC--CCeEEEeccc-cCCeeeeEEEEecHHHHhccCCCccccccCCCh
Confidence 5899999999999999999999999999999998 9999999999 788876432 23356788999999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy4800 74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPST 119 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~~ 119 (119)
++|+++.|+|++|.++++.+|..++|..|+.+|+++.+++|.++++
T Consensus 312 Lg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~ 357 (427)
T KOG1402|consen 312 LGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKE 357 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhe
Confidence 9999999999999999999999999999999999999999998874
No 5
>KOG1404|consensus
Probab=100.00 E-value=1.2e-33 Score=213.46 Aligned_cols=115 Identities=29% Similarity=0.432 Sum_probs=104.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccc-----c--ccccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFV-----P--QQAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~-----~--~~~~~~~~T~~~~p 73 (119)
++||++|.++|+|||||||||||.+|++|++++. |||+|++|+| ++|+|+++.+. + .+...+++||+|||
T Consensus 240 ~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~--PDIvTmAKgi-GnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP 316 (442)
T KOG1404|consen 240 KVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVV--PDIVTMAKGI-GNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNP 316 (442)
T ss_pred HHHHHcCCEEEehhhhhccccccccccccccCCC--ccHHHHHhhc-cCCCcceeeecCHHHHHHHHhccccccccCCCc
Confidence 4799999999999999999999999999999999 9999999999 57788765432 2 12344899999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800 74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS 118 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~ 118 (119)
++|++++++|+++++++++++..+.|.+|+++|.+++++||+|.+
T Consensus 317 ~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGd 361 (442)
T KOG1404|consen 317 VACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGD 361 (442)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceee
Confidence 999999999999999999999999999999999999999999864
No 6
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=6.5e-33 Score=217.51 Aligned_cols=114 Identities=23% Similarity=0.265 Sum_probs=101.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccc----c-ccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFV----P-QQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~----~-~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||||++|+++++|+. |||+|+||+| +||+|++..+. + ..+..|++||++||++
T Consensus 259 ~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~--PDiv~~gKgl-ggG~PlsAv~~~~~~~~~~~~~~~~T~~gnpla 335 (464)
T PRK06938 259 RITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGII--PDVVVLSKAI-GGSLPLAVVVYREWLDTWQPGAHAGTFRGNQMA 335 (464)
T ss_pred HHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCC--CCEEEeeccc-cCCCceEEEeehhHhhccCCCCCCCCCCcCHHH
Confidence 5899999999999999999999999999999998 9999999999 67887654322 1 2234688999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
|++++++|++++++++.++++++|++|+++|++++++||.|.
T Consensus 336 ~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~ 377 (464)
T PRK06938 336 MAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLG 377 (464)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 999999999999999999999999999999999999999653
No 7
>PRK07482 hypothetical protein; Provisional
Probab=99.98 E-value=1.1e-32 Score=215.97 Aligned_cols=114 Identities=24% Similarity=0.259 Sum_probs=100.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc--------ccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ--------QAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~--------~~~~~~ 66 (119)
+||++||++||+|||||||||||++|+++++|++ |||+|+||+| +||| |++. ++.+. ....|+
T Consensus 248 ~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~ 324 (461)
T PRK07482 248 AVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE--PDLITVAKGL-TSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHG 324 (461)
T ss_pred HHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC--CCEEEEcccc-ccCccccceeeecHHHHHHHhcccccCCccccC
Confidence 5899999999999999999999999999999998 9999999999 7887 4432 22211 123578
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+||++||++|++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus 325 ~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~ 375 (461)
T PRK07482 325 WTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVG 375 (461)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999999999999998763
No 8
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.98 E-value=1.4e-32 Score=215.40 Aligned_cols=114 Identities=26% Similarity=0.278 Sum_probs=101.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccc-----ccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEF-----VPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~-----~~~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||||++|+++++|+. |||+|+||+| +||+|++... ....+..|++||++||++
T Consensus 253 ~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~--PDivt~gK~l-~gG~Pi~av~~~~~~~~~~~~~~~~T~~gnpla 329 (459)
T PRK06931 253 EVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIE--PDIIVMSKAV-GGGLPLAVLGIKKEFDAWQPGGHTGTFRGNQLA 329 (459)
T ss_pred HHHHHcCCEEEEecchhcCCcCchHHHhhhcCCC--CCEEEecccc-cCCcceeeeeeHHHHhhccCCCCCCCCCCCHHH
Confidence 5899999999999999999999999999999998 9999999999 6788764322 112235688999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
|++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus 330 ~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~ 371 (459)
T PRK06931 330 MATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIG 371 (459)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999999999999999999999999653
No 9
>PRK07483 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-32 Score=213.88 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=100.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----cccc---c--ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQ---Q--AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~---~--~~~~~~T~ 69 (119)
++|+|||++||+|||||||||||++|+++++|++ |||+|+||+| +||+ |++.. +.+. . ...|++||
T Consensus 228 ~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~ 304 (443)
T PRK07483 228 EVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVA--PDLVTIAKGL-GAGYQPIGAVLASDRIYDAIADGSGFFQHGHTY 304 (443)
T ss_pred HHHHHhCCEEEEecceeCcccCcHHHHHhhcCCC--CCeeeehhhh-ccCccccEEEEEcHHHHHHHhcCCCccccCCCC
Confidence 5899999999999999999999999999999998 9999999999 7887 54322 2221 1 12578999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
++||++|++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus 305 ~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 352 (443)
T PRK07483 305 LGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVG 352 (443)
T ss_pred CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 999999999999999999999999999999999999999988898653
No 10
>PRK05965 hypothetical protein; Provisional
Probab=99.97 E-value=2.5e-32 Score=213.96 Aligned_cols=112 Identities=22% Similarity=0.217 Sum_probs=98.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----cccc---c-----cccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQ---Q-----AYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~---~-----~~~~~ 66 (119)
++|++||++||+|||||||||||++|+++++|++ |||+|+||+| +||+ |++.. +.+. . ...|+
T Consensus 243 ~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~ 319 (459)
T PRK05965 243 EACRELGILFVADEVITGFGRTGPLFACEAEGVV--PDLMTVAKGL-TSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHG 319 (459)
T ss_pred HHHHHcCCEEEEechhccCccCchhhhHhhcCCC--CCeEEechhh-ccCCcceeEEEEcHHHHHHHhcccccccccccc
Confidence 5899999999999999999999999999999998 9999999999 7887 44322 2211 1 23578
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+||++||++|++++++|++++++++.++++++|++|+++|+++. ++|.|
T Consensus 320 ~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v 368 (459)
T PRK05965 320 YTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AHPLV 368 (459)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCE
Confidence 99999999999999999999999999999999999999999986 58865
No 11
>PRK07678 aminotransferase; Validated
Probab=99.97 E-value=3.3e-32 Score=212.80 Aligned_cols=113 Identities=30% Similarity=0.455 Sum_probs=98.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-c------ccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-Q------AYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-~------~~~~~~ 67 (119)
++|++||++||+|||||||||+|++|++|++|+. |||+||||+| +||+ |++. ++.+. . ...|++
T Consensus 241 ~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~--PDivt~gK~l-ggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~ 317 (451)
T PRK07678 241 EICQKHGALLISDEVICGFGRTGKAFGFMNYGVK--PDIITMAKGI-TSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVN 317 (451)
T ss_pred HHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCC--CCEEEeeccc-ccCCcceeEEEEcHHHHHHHhccCcccccccCC
Confidence 5899999999999999999999999999999998 9999999999 6775 5433 22221 1 135889
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
||++||++|++++++|++++++++.++++++|++|++.|+++.++||.|
T Consensus 318 T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v 366 (451)
T PRK07678 318 TFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLV 366 (451)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999999999999999999999999888888865
No 12
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.97 E-value=7e-32 Score=204.38 Aligned_cols=113 Identities=33% Similarity=0.461 Sum_probs=98.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~ 74 (119)
++|+|||++||+|||||||||+|++|++++++++ |||+|+||+| +||+|++.. +.+ .....+.+||++||+
T Consensus 205 ~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~ 281 (339)
T PF00202_consen 205 ELCREHGILLIADEVQTGFGRTGKFFASEHYGVD--PDIVTFGKGL-GGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPL 281 (339)
T ss_dssp HHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSS--SSEEEEEGGG-GTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HH
T ss_pred ccccccccceecccccccccccCCccceeccccc--Ccccccccch-hhhhhcccccccchhhccccccccccccccchH
Confidence 4899999999999999999999999999999999 9999999999 677665433 222 234458899999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+|++++++|++++++++.+++++++++|+++|+++.++||.|
T Consensus 282 ~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i 323 (339)
T PF00202_consen 282 SCAAALATLEILEEEDLLERVRELGERLREGLRELAARYPLI 323 (339)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred hhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999999999999999999999999999999999988765
No 13
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.97 E-value=5.6e-32 Score=211.13 Aligned_cols=112 Identities=28% Similarity=0.379 Sum_probs=99.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---cccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---QAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~~~~~~~T~~~ 71 (119)
++|++||++||+|||||||||||++|+++++|+. |||+||||+| +||+ |++. ++.+. .+..|++||+|
T Consensus 252 ~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~--PDivt~gK~l-g~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~g 328 (442)
T TIGR03372 252 ALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQ--PDILCLAKAL-GGGVMPIGATIATEAVFSVLFDNPFLHTTTFGG 328 (442)
T ss_pred HHHHHcCCEEEEeecccCCCccccchhhhhcCCC--CCeeeehhhh-cCCcccceEEEecHHHHHhhhccCccccCCCCC
Confidence 4899999999999999999999999999999998 9999999999 6885 4432 23221 23467899999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
||++|++++++|++++++++.++++++|++|+++|+++.+++|.
T Consensus 329 np~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~ 372 (442)
T TIGR03372 329 NPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPD 372 (442)
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999984
No 14
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.97 E-value=1.1e-31 Score=210.39 Aligned_cols=115 Identities=47% Similarity=0.859 Sum_probs=102.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-cccccccceeeccCCCHHHHHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-FVPQQAYRVFNTWMGDPGKVLLL 79 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-~~~~~~~~~~~T~~~~p~~~a~a 79 (119)
++|++||++||+|||||||||+|.+|+++++|++..|||+|+||+||+||+++... +....+..|++||++||++|+++
T Consensus 279 ~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~~~~~~~~~~~~~~~~~~T~~gnp~~~aaa 358 (464)
T TIGR00699 279 DITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDPAFRPNKPYRQFNTWMGDPSRALIL 358 (464)
T ss_pred HHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCccccchhccCCCCcccccCCCCCHHHHHHH
Confidence 58999999999999999999999999999999976799999999996567765543 32223557899999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 80 KGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 80 ~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
+++|++++++++.++++++|++|+++|+++.+++|.
T Consensus 359 ~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~ 394 (464)
T TIGR00699 359 REIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPE 394 (464)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999988994
No 15
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.97 E-value=8.6e-32 Score=210.65 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=97.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-c------ccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-Q------AYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-~------~~~~~~ 67 (119)
++|++||++||+|||||||||||++|+++++|++ |||+|+||+| +||| |++. ++.+. . ...|.+
T Consensus 250 ~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~--PDivt~gKgl-~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~ 326 (453)
T PRK06943 250 ALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVW--PDFLCLSKGI-SGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSH 326 (453)
T ss_pred HHHHHcCCEEEeechhhCCCCCcchhHHHhCCCC--CCeEeeehhh-ccCcccceEEEEcHHHHHhhcccCccCCccCCC
Confidence 5899999999999999999999999999999998 9999999999 6886 4432 22221 1 234789
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
||+|||++|++++++|++++++++.++++++|++|+++|+++. ++|.|
T Consensus 327 T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v 374 (453)
T PRK06943 327 SYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-AHPQV 374 (453)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCE
Confidence 9999999999999999999999999999999999999999985 47764
No 16
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.97 E-value=8.6e-32 Score=210.93 Aligned_cols=112 Identities=29% Similarity=0.410 Sum_probs=98.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---cccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---QAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~~~~~~~T~~~ 71 (119)
++|++||++||+|||||||||+|++|+++++|+. |||+||||+| +||+ |++. ++.+. .+..|++||+|
T Consensus 259 ~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~--PDivt~gK~l-ggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~g 335 (459)
T PRK11522 259 KLCDEFGALLILDEVQTGMGRTGKMFACEHENVQ--PDILCLAKAL-GGGVMPIGATIATEEVFSVLFDNPFLHTTTFGG 335 (459)
T ss_pred HHHHHcCCEEEeccceecCCccchhhhhhccCCC--CCEEEechhh-hCCCccceeEEEcHHHHHHhccCCcccCCCCCC
Confidence 4899999999999999999999999999999998 9999999999 6785 4432 22221 23467899999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
||++|++++++|++++++++.++++++|++|+++|+++.++||.
T Consensus 336 np~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~ 379 (459)
T PRK11522 336 NPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPD 379 (459)
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999988984
No 17
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.97 E-value=1.4e-31 Score=210.02 Aligned_cols=112 Identities=20% Similarity=0.332 Sum_probs=98.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc--------ccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ--------QAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~--------~~~~~~ 66 (119)
++|++||++||+|||||||||||++|+++++|+. |||+||||+| +||| |++. ++.+. ....|+
T Consensus 243 ~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~ 319 (466)
T PRK07030 243 EACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIR--PDFLCLSKAL-TGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHS 319 (466)
T ss_pred HHHHHcCCEEEEeehhhCcCccccchHHHhcCCC--CCEEeeehhc-cCCcccceEEEecHHHHHHHhcccccccccccC
Confidence 4899999999999999999999999999999998 9999999999 7897 4432 22211 123588
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+||++||++|++++++|++++++++.++++++|++|++.|+++. ++|.|
T Consensus 320 ~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v 368 (466)
T PRK07030 320 HSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLA-DHPHV 368 (466)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCE
Confidence 99999999999999999999999999999999999999999985 68865
No 18
>PRK07481 hypothetical protein; Provisional
Probab=99.97 E-value=1e-31 Score=209.98 Aligned_cols=114 Identities=26% Similarity=0.330 Sum_probs=99.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----cccc--------ccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQ--------QAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~--------~~~~~~ 66 (119)
++|++||++||+|||||||||+|++|+++++|++ |||+|+||+| +||+ |++.. +.+. ....|+
T Consensus 241 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~ 317 (449)
T PRK07481 241 EVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK--PDIMCLAKGI-TSGYVPLGATMVNARIADAFEANADFGGAIMHG 317 (449)
T ss_pred HHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC--CCEEEEeecc-cCCCcCceEEEEcHHHHHHHhccCccccccccC
Confidence 5899999999999999999999999999999998 9999999999 7886 44322 2211 123578
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+||++||++|++++++|++++++++.++++++|++|++.|+++.+++|.|.
T Consensus 318 ~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 368 (449)
T PRK07481 318 YTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVG 368 (449)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence 999999999999999999999999999999999999999999998898653
No 19
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.97 E-value=2.1e-31 Score=210.73 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=97.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccccc--------cccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQQ--------AYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~~--------~~~~~ 66 (119)
++|++||++||+|||||||||+|++|+++++|++ |||+||||+| +||+ |++. ++.+.. ...|+
T Consensus 288 ~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~--PDivtlgK~l-ggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~ 364 (504)
T PLN02760 288 AVLKKYDILFIADEVICAFGRLGTMFGCDKYNIK--PDLVSLAKAL-SSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHG 364 (504)
T ss_pred HHHHHcCCEEEecchhhCCcccchhhHHHhcCCC--CcEEEecccc-cCCccccceEeecHHHHhhhhcccccccCcccC
Confidence 5899999999999999999999999999999998 9999999999 6776 4432 222210 23578
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+||++||++|++++++|++++++++.+++++++++|++.|+++ +++|.|.
T Consensus 365 ~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~ 414 (504)
T PLN02760 365 FTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF-SGSPIIG 414 (504)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hcCCCee
Confidence 9999999999999999999999999999999999999999998 6688653
No 20
>PRK12403 putative aminotransferase; Provisional
Probab=99.97 E-value=2.4e-31 Score=208.42 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=98.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc-ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ-AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~-~~~~~~T~ 69 (119)
++|++||++||+|||||||||+|++|+++++|++ |||+|+||+| +||+ +++. ++.+ .. ...|++||
T Consensus 250 ~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~--PDiv~~gK~l-ggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~ 326 (460)
T PRK12403 250 RICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE--PDTLSIAKGL-TSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTY 326 (460)
T ss_pred HHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC--CCeEEEcccc-cccccceEEEEECHHHHHHHhcCCCccccCCCC
Confidence 4899999999999999999999999999999998 9999999999 6887 4432 2221 11 22477899
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHhhhhcCCCCC
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQ-KTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~-~~g~~l~~~L~~l~~~~p~i~ 117 (119)
++||++|++++++|++++++++.++++ +++++|++.|+++.+++|.|.
T Consensus 327 ~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~ 375 (460)
T PRK12403 327 SGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVG 375 (460)
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999996 999999999999999998653
No 21
>PRK07480 putative aminotransferase; Validated
Probab=99.97 E-value=3.7e-31 Score=207.25 Aligned_cols=113 Identities=23% Similarity=0.377 Sum_probs=97.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccc-ccc-----ccccc-----cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF-LKP-----EFVPQ-----QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~-~~~-----~~~~~-----~~~~~~~T~ 69 (119)
+||++||++||+|||||||||||++|+++++|++ |||+||||+| +||+. ++. ++.+. ....|++||
T Consensus 247 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~ 323 (456)
T PRK07480 247 RICRKYDILLVADEVICGFGRTGEWFGSQHFGIK--PDLMTIAKGL-TSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTY 323 (456)
T ss_pred HHHHHcCCEEEEechhhCCCcCcchhhhhhcCCC--CCeeeeehhh-ccCCccceEEEEcHHHHHHHhcCCCCcccCCCC
Confidence 5899999999999999999999999999999998 9999999999 68874 332 22221 123578999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHH-HHHHHHHHHHHHhhhhcCCCCC
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRV-QKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~-~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
++||++|++++++|++++++++.+++ +++|++|+++|+++ ++||.|.
T Consensus 324 ~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~~~i~ 371 (456)
T PRK07480 324 SGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADHPLVG 371 (456)
T ss_pred CcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcCCCee
Confidence 99999999999999999999999999 69999999999996 5688654
No 22
>PRK06062 hypothetical protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=206.96 Aligned_cols=113 Identities=27% Similarity=0.411 Sum_probs=98.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---cccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---QAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~~~~~~~T~~~ 71 (119)
++|++||++||+|||||||||+|++|+++++|+. |||+||||+| +||| |++. ++.+. ....+++||++
T Consensus 242 ~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~--PDi~t~gK~l-ggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~g 318 (451)
T PRK06062 242 ELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVV--PDLITFAKGV-NSGYVPLGGVAISEAIAATFADRPYPGGLTYSG 318 (451)
T ss_pred HHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCC--CCeeeechhh-hcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCC
Confidence 4899999999999999999999999999999998 9999999999 6887 4432 23221 12347789999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHH-HHHHHHHHhhhhcCCCC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTG-DILLNVRLGLGQESNLQ 116 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g-~~l~~~L~~l~~~~p~i 116 (119)
||++|++++++|++++++++.++++++| ++|++.|+++.+++|.|
T Consensus 319 npl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v 364 (451)
T PRK06062 319 HPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSV 364 (451)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 9999999999999999999999999999 69999999999889864
No 23
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.97 E-value=4.7e-31 Score=207.36 Aligned_cols=113 Identities=22% Similarity=0.383 Sum_probs=97.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-------cccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-------QAYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-------~~~~~~~ 67 (119)
++|++||++||+|||||||||||++|+++++|+. |||+|+||+| +||| |++. ++.+. ....|++
T Consensus 265 ~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~--PDiv~~gKgl-~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~ 341 (472)
T PRK08742 265 ELCDAHGAFLIADEIATGFGRTGTLFACEQAGVM--PDLLCLSKGL-TGGFLPLSAVLATQQLYDAFLDDSRERAFLHSH 341 (472)
T ss_pred HHHHHcCCEEEEechhhCCCCCccchHHHhcCCC--CCEEEEcccc-cCCCCCcceeeccHHHHHHhhccCccCccCcCC
Confidence 5899999999999999999999999999999998 9999999999 7887 4432 22211 1235789
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
||++||++|++++++|++++++++.++++++|++|++.++.+ ++||.|.
T Consensus 342 T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~~~i~ 390 (472)
T PRK08742 342 SYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEHPHVA 390 (472)
T ss_pred CCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcCCCee
Confidence 999999999999999999999999999999999999877775 5688653
No 24
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.97 E-value=6.7e-31 Score=205.91 Aligned_cols=113 Identities=23% Similarity=0.361 Sum_probs=98.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----ccccc--ccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQQ--AYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~~--~~~~~~T~~~~ 72 (119)
++|++||++||+|||||||||+|++|+++++|+. |||+||||+| +||+ |++.. +.... ...+ +||++|
T Consensus 256 ~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~--PDiv~~gKgl-~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gn 331 (459)
T PRK06082 256 EICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIE--PDILCIGKGL-GGGLVPIAAMITKDKYNTAAQISLGH-YTHEKS 331 (459)
T ss_pred HHHHHcCCEEEEechhhCCCccchhhHhHhhCCC--CCEEEecccc-cCCCCcceEEEEcHHHHhhccCCCCC-CCCCcC
Confidence 5899999999999999999999999999999998 9999999999 6775 54432 22211 1234 799999
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
|++|++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus 332 pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 376 (459)
T PRK06082 332 PLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIG 376 (459)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence 999999999999999889999999999999999999999998763
No 25
>PRK06105 aminotransferase; Provisional
Probab=99.97 E-value=4.3e-31 Score=207.01 Aligned_cols=113 Identities=22% Similarity=0.277 Sum_probs=97.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc----cccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ----AYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~----~~~~~ 66 (119)
+||++||++||+|||||||||+|++|++++++++ |||+|+||+| +||+ |.+. .+.+ .. ...|.
T Consensus 246 ~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~--PDi~~~gK~l-ggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~ 322 (460)
T PRK06105 246 AVLRKYDILLVADEVICGFGRTGNMFGCETFGIK--PDILVMSKQL-SSSYQPLSAVLMNEKVYDPIADESGKIGTFGHG 322 (460)
T ss_pred HHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC--CCeeeeeccc-ccCcccceEEEEcHHHHHHHhcccccCcccccC
Confidence 4899999999999999999999999999999998 9999999999 5775 4432 2221 11 12378
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+||++||++|++++++|++++++++.++++++|++|+++|+++ +++|.|.
T Consensus 323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~ 372 (460)
T PRK06105 323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVG 372 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeE
Confidence 8999999999999999999999999999999999999999999 7788763
No 26
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.97 E-value=1.5e-30 Score=202.96 Aligned_cols=114 Identities=25% Similarity=0.324 Sum_probs=101.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccc-----cccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFV-----PQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~-----~~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||+|++|+++++++. |||+|+||+| +||++++..+. ......+.+||++||++
T Consensus 234 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l-~~G~Pigav~~~~~~~~~~~~~~~~T~~gnpla 310 (442)
T TIGR00709 234 EVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIE--PDFVVMSKAV-GGGLPLAVLLIAPEFDAWQPAGHTGTFRGNQLA 310 (442)
T ss_pred HHHHHcCCEEEEeccccCCCCCCchhHHHHcCCC--CcEEEEcccc-cCCcccEEEEEchHHhccCCCcCCCCCCcCHHH
Confidence 4899999999999999999999999999999998 9999999999 56777654322 12234578999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
|++++++|++++++++.+++++++++|+++|+++.++||.|.
T Consensus 311 ~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~ 352 (442)
T TIGR00709 311 MVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIG 352 (442)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 999999999999999999999999999999999999999764
No 27
>PRK07036 hypothetical protein; Provisional
Probab=99.97 E-value=2e-30 Score=203.56 Aligned_cols=112 Identities=27% Similarity=0.376 Sum_probs=96.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhh-hcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-c-------ccce
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHE-HFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-Q-------AYRV 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~-~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-~-------~~~~ 65 (119)
++|++||++||+|||||||||+|++|+++ ++|++ |||+|+||+| +||| |++. ++.+. . ...+
T Consensus 248 ~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~--PDivt~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~ 324 (466)
T PRK07036 248 EICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ--PDIITFAKGL-TSGYQPLGAVIISERLLDVISGPNAKGNVFTH 324 (466)
T ss_pred HHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC--CCEEEEcccc-ccCccccEEEEEcHHHHHHHhcccCcCccccc
Confidence 58999999999999999999999999998 78998 9999999999 7887 4432 22221 0 1246
Q ss_pred eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
++||++||++|++++++|+++++++++++++++|++|+++|+++ ++||.|
T Consensus 325 ~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v 374 (466)
T PRK07036 325 GFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-RELPLV 374 (466)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccCCCE
Confidence 78999999999999999999999999999999999999999987 468865
No 28
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.97 E-value=1.9e-30 Score=203.33 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=97.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc--------ccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ--------QAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~--------~~~~~~ 66 (119)
++|++||++||+|||||||||+|++|+++++|+. |||+|+||+| +||+ |++. ++.+. ....|.
T Consensus 252 ~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~ 328 (460)
T PRK06916 252 NLCTKYNVLFITDEVATGFGRTGKMFACEHENVT--PDIMTAGKGL-TGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHG 328 (460)
T ss_pred HHHHHcCCEEEeechhhCCCcCchhhHHHhcCCC--CCeeeeehhh-hcCccccceeeecHHHHHHhhccccccCccccC
Confidence 4899999999999999999999999999999998 9999999999 6886 4432 22211 123578
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+||++||++|++++++|+++++++++++++++|++|++.|+++.+ +|.|
T Consensus 329 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v 377 (460)
T PRK06916 329 HSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHV 377 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCe
Confidence 899999999999999999999999999999999999999999975 8865
No 29
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.97 E-value=2.5e-30 Score=201.79 Aligned_cols=113 Identities=24% Similarity=0.369 Sum_probs=100.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||||||||+|.+|+++++|+. |||+|+||++ +||++++.. +.+ .....+.+||++||+
T Consensus 247 ~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~--PDiv~~gK~l-~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl 323 (443)
T PRK06058 247 EWCRENGVVFIADEVQTGFARTGAWFACEHEGIV--PDLITTAKGI-AGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPV 323 (443)
T ss_pred HHHHHcCCEEEEeccccCCCcChhhhHHHhcCCC--CCEEEEcccc-cCCCccEEEEEcHHHHhhccCCCCCCCCCCCHH
Confidence 4899999999999999999999999999999998 9999999999 578776433 322 223457899999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+|++++++|++++++++.+++++++++|+++|+++.+++|.|
T Consensus 324 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i 365 (443)
T PRK06058 324 ACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRI 365 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 999999999999999999999999999999999998888864
No 30
>PRK06917 hypothetical protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=202.16 Aligned_cols=113 Identities=22% Similarity=0.337 Sum_probs=98.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc-ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ-AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~-~~~~~~T~ 69 (119)
++|++||++||+|||||||||+|++|++++++++ |||+||||+| +||+ |++. ++.+ .. ...+++||
T Consensus 228 ~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~--PDi~~~gK~l-~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~ 304 (447)
T PRK06917 228 EICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE--PDIMTLGKGL-GAGYTPIAATVVSDRVMEPILRGSRSIMSGHTL 304 (447)
T ss_pred HHHHHcCCEEEEechhhCcCcccchhhHHhcCCC--CCEEEeeehh-ccCCcceEEEEEcHHHHHHHhccCcccccccCC
Confidence 4899999999999999999999999999999998 9999999999 6887 4432 2221 11 23467899
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
++||++|++++++|++++++++.++++++|++|++.|+++.+++|.|
T Consensus 305 ~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i 351 (447)
T PRK06917 305 SANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTII 351 (447)
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999989865
No 31
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.97 E-value=2.8e-30 Score=202.29 Aligned_cols=113 Identities=27% Similarity=0.413 Sum_probs=99.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||+|++|+++++|++ |||+||||+| +||++++. .+.+.....+++||++||++
T Consensus 250 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDiv~~gK~l-~gG~pi~av~~~~~i~~~~~~~~~~T~~g~p~~ 326 (457)
T PRK05639 250 KLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVK--PDLIIFGKGV-ASGMGLSGVIGRKELMDLTSGSALLTPAANPVI 326 (457)
T ss_pred HHHHHcCCEEEEechhhccCcCchHHHHHhcCCC--CCEEEechhh-cCCCcceeEEehHHHHhhcCCCcccCCCcCHHH
Confidence 4899999999999999999999999999999998 9999999999 67776543 23332233466899999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
|++++++|++++++++.++++++|++|+++|+++.+++|.+
T Consensus 327 ~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~ 367 (457)
T PRK05639 327 SAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVI 367 (457)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999889865
No 32
>PRK06148 hypothetical protein; Provisional
Probab=99.96 E-value=4.8e-30 Score=215.79 Aligned_cols=114 Identities=26% Similarity=0.394 Sum_probs=100.7
Q ss_pred ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cc-cceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QA-YRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~-~~~~~T~~~~ 72 (119)
++|++||++||+|||||||||+|. +|+++++|+. |||+|+||+| +||+|++.. +++. .. ..+++||+||
T Consensus 812 ~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~--PDivt~gK~l-ggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gn 888 (1013)
T PRK06148 812 AMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVV--PDIVTMGKPI-GNGHPMGAVVTTREIADSFDNGMEYFNTFGGN 888 (1013)
T ss_pred HHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCC--cceeeecccc-cCCcceEEEEEcHHHHhhccCCCccccCCCCC
Confidence 589999999999999999999997 8999999998 9999999999 678876543 3221 12 2477999999
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
|++|++++++|+++++++++++++++|++|+++|+++.++||.|.
T Consensus 889 pla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~ 933 (1013)
T PRK06148 889 PVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIG 933 (1013)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 999999999999999999999999999999999999999999763
No 33
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.96 E-value=4.3e-30 Score=200.60 Aligned_cols=115 Identities=28% Similarity=0.433 Sum_probs=101.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccccc-----c-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP-----Q-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~-----~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||||||||+|++|+++++++. |||+||||+++.+|++..+.+.. . .+..+++||++||+
T Consensus 253 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l~~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl 330 (443)
T PRK08297 253 ELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVR--PDIVAFGKKTQVCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLV 330 (443)
T ss_pred HHHHHcCCEEEEechhhccCccchHHHHHhcCCC--CCEEEecccccccceecchHHHHhhhhhccCccccCCCCCccHH
Confidence 4899999999999999999999999999999998 99999999997677776654221 1 13458899999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+|++++++|++++++++.++++++|++|+++|+++.+++|.++
T Consensus 331 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~ 373 (443)
T PRK08297 331 DMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVV 373 (443)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999999999999998898764
No 34
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.96 E-value=6.2e-30 Score=197.14 Aligned_cols=111 Identities=31% Similarity=0.407 Sum_probs=98.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||+|++|++++++++ |||+||||+| +||++.+.. +....+..+++||++||++
T Consensus 207 ~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~--PDi~t~gK~l-g~G~p~~av~~~~~i~~~~~~~~~~T~~g~pl~ 283 (395)
T PRK03715 207 ALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE--PDIMTLGKGI-GGGVPLAALLAKAEVAVFEAGDQGGTYNGNPLM 283 (395)
T ss_pred HHHHHcCCEEEEeccccCCCCCcchhhHhhcCCC--Cceeeehhhh-hCCcceEEEEEccccccccCCCcCCCCCCCHHH
Confidence 4799999999999999999999999999999998 9999999999 577766433 3223345678999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN 114 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p 114 (119)
|++++++|++++++++++++++++++|+++|+++.++++
T Consensus 284 ~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 322 (395)
T PRK03715 284 TAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERG 322 (395)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999899999999999999999999987776
No 35
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.96 E-value=9.6e-30 Score=197.97 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=96.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-cc-----ccc-----c-ccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-EF-----VPQ-----Q-AYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-~~-----~~~-----~-~~~~~~T 68 (119)
+||++||++||+|||||||||+|++|+++++|+. |||+||||+| +||+++.+ .+ .+. . ...|++|
T Consensus 235 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T 311 (429)
T PRK06173 235 ELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVV--PDIMCIGKAL-TGGYLTLSATITTEAIAQTICSGEAKCFMHGPT 311 (429)
T ss_pred HHHHHcCCeEEecchhcCCCcCCcchHHHhcCCC--CCEEEeehhh-hCCccccceEEecHHHHHHHhcCCCCccccCCC
Confidence 4899999999999999999999999999999998 9999999999 78975532 22 111 1 1347789
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
|++||++|++++++|++++++++++++++++++|++.|+++ .++|.|
T Consensus 312 ~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~-~~~~~v 358 (429)
T PRK06173 312 FMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPA-AEFDSV 358 (429)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCCCe
Confidence 99999999999999999999899999999999999999987 457754
No 36
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.96 E-value=6.8e-30 Score=198.79 Aligned_cols=112 Identities=22% Similarity=0.339 Sum_probs=96.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc------ccccc----c--ccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP------EFVPQ----Q--AYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~------~~~~~----~--~~~~~~T 68 (119)
++|++||++||+|||||||||+|++|+++++|++ |||+||||+| +||+++.+ ++.+. . ...+++|
T Consensus 233 ~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~--PDi~t~gK~l-~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T 309 (428)
T PRK07986 233 KLCDREGILLIADEIATGFGRTGKLFACEHAGIA--PDILCLGKAL-TGGTMTLSATLTTREVAETISNGEAGCFMHGPT 309 (428)
T ss_pred HHHHHcCCEEEEeccccCCccCCCeeeecccCCC--CCEEEechhh-hCCcccCcchhchHHHHHHhhcCCCCccccCCC
Confidence 4899999999999999999999999999999998 9999999999 78864422 22221 1 1247889
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
|++||++|++++++|++++++++++++++++++|++.|+++.+ +|.|
T Consensus 310 ~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~-~~~i 356 (428)
T PRK07986 310 FMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLRD-APMV 356 (428)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCCE
Confidence 9999999999999999999999999999999999999999864 7765
No 37
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.96 E-value=1e-29 Score=197.45 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=96.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc------ccccc-------cccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP------EFVPQ-------QAYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~------~~~~~-------~~~~~~~ 67 (119)
++|++||++||+|||||||||+|++|+++++++. |||+||||+| +||+++.+ .+.+. ....|++
T Consensus 229 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDi~t~gK~l-~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~ 305 (422)
T PRK05630 229 TLCDKHDILLIADEIATGFGRTGELFATLAAGVT--PDIMCVGKAL-TGGFMSFAATLCTDKVAQLISTPNGGGALMHGP 305 (422)
T ss_pred HHHHHcCCEEEEecceeCCCcCchhhHHHhcCCC--CCeeeeechh-hcCccccceeeccHHHHHHHhccCCCCccccCC
Confidence 4899999999999999999999999999999998 9999999999 78875422 22211 1225789
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
||++||++|++++++|++++++++++++++++++|++.|+++. ++|.|
T Consensus 306 T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~-~~~~v 353 (422)
T PRK05630 306 TFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLA-HLPGV 353 (422)
T ss_pred CCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-cCCCe
Confidence 9999999999999999999988999999999999999999875 47765
No 38
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.96 E-value=1.1e-29 Score=197.43 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=99.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc----ccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP----QQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~----~~~~~~~~T~~~ 71 (119)
++|++||++||+||||||| |+|.+|+++++|+. |||+||||+| +||+|++.. +.+ ..+..+++||++
T Consensus 228 ~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~--PDivt~gK~l-ggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~g 303 (428)
T PRK12389 228 ELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVE--PDLTALGKII-GGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAG 303 (428)
T ss_pred HHHHHcCCEEEEEcccccc-ccCcchhhHHhCCC--CCeeeechhh-cCCCceeEEeEHHHHHhhhccCCCcccccCCcc
Confidence 4899999999999999999 99988899999998 9999999999 677776432 222 123468899999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
||++|++++++|++++++++++++++++++|+++|+++.+++|.+.
T Consensus 304 npl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~ 349 (428)
T PRK12389 304 NPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITI 349 (428)
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 9999999999999999889999999999999999999988888653
No 39
>PRK06149 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=212.04 Aligned_cols=113 Identities=27% Similarity=0.369 Sum_probs=99.1
Q ss_pred ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEEchhhccCccccccc-----ccccc--ccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQQ--AYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~~--~~~~~~T~~~~ 72 (119)
++|++||++||+|||||||||+|+ +|+++++|+. |||+||||+| +||++++.. +.+.. ...+++||++|
T Consensus 772 ~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~--PDivt~gK~l-g~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gn 848 (972)
T PRK06149 772 AAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVV--PDIITMAKGM-GNGHPLGAVITRREIAEALEAEGYFFSSTGGS 848 (972)
T ss_pred HHHHHcCCEEEEEeehhcCCccCccchhhhhcCCC--CCEEEecccc-cCCeeeEEEEEcHHHHhhhccCCcccCCCCCC
Confidence 589999999999999999999998 6799999998 9999999999 677776433 32211 23567889999
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
|++|++++++|++++++++.++++++|++|+++|+++.++||.|
T Consensus 849 P~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i 892 (972)
T PRK06149 849 PVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLI 892 (972)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999999975
No 40
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.96 E-value=2.7e-29 Score=196.11 Aligned_cols=112 Identities=23% Similarity=0.271 Sum_probs=95.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc----cccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ----AYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~----~~~~~ 66 (119)
++|++||++||+|||||||||+|++|+++++|++ |||+||||+| +||+ |++. ++.+ .. ...+.
T Consensus 243 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDivt~gK~l-~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~ 319 (442)
T PRK13360 243 EICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT--PDLLTCAKGL-TNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHG 319 (442)
T ss_pred HHHHHcCCEEEEechhhCCCCCccchhhhhcCCC--Cceeeeeecc-ccCccceEEEEEcHHHHHHhhcCCccccccccC
Confidence 5899999999999999999999999999999998 9999999999 6674 4432 2221 11 12467
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+||++||++|++++++|++++++++.+++++++++|++.|+++.+ +|.|
T Consensus 320 ~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v 368 (442)
T PRK13360 320 YTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRD-APHV 368 (442)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-CCCe
Confidence 899999999999999999999889999999999999999998854 7754
No 41
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.96 E-value=3.2e-29 Score=206.54 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=91.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc------ccccc-------cccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP------EFVPQ-------QAYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~------~~~~~-------~~~~~~~ 67 (119)
++|++||++||+|||+|||||||++|+++++|+. |||+|+||+| +|||.|.+ ++.+. ....|++
T Consensus 613 ~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~--PDIi~~gKgL-tgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~ 689 (817)
T PLN02974 613 QVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK--PDIACYAKLL-TGGLVPLAATLATEEVFEAFRGPSKLDALLHGH 689 (817)
T ss_pred HHHHHhCCEEEEeecccCCCcccchhhHHhcCCC--CCEEeecccc-cCCCCccEEEEEcHHHHHhhccccccCCcccCC
Confidence 5899999999999999999999999999999998 9999999999 89975432 22211 1235889
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENL----LDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~----~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
||++||++|++++++|++++++++ .++.+++++++++.|++..++||.|.
T Consensus 690 Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~ 743 (817)
T PLN02974 690 SYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVE 743 (817)
T ss_pred CCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence 999999999999999999998754 44456666667777744445688764
No 42
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.96 E-value=7.4e-29 Score=193.75 Aligned_cols=112 Identities=24% Similarity=0.300 Sum_probs=95.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---c-----cccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---Q-----AYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~-----~~~~~ 66 (119)
++|++||++||+|||||||||+|++|++++++++ |||+|+||+| +||+ |++. ++.+. . ...+.
T Consensus 246 ~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~--PDi~~~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~ 322 (445)
T PRK09221 246 EICDKHGILLIFDEVITGFGRLGAAFAAERFGVT--PDIITFAKGL-TNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHG 322 (445)
T ss_pred HHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC--CCEEEecccc-ccCcccceeeEEcHHHHHhhccCcccccccccc
Confidence 4899999999999999999999999999999998 9999999999 6675 3332 22211 1 12467
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+||++||++|++++++|++++++++.+++++++++|++.|+++. ++|.|
T Consensus 323 ~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v 371 (445)
T PRK09221 323 YTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLK-GLPHV 371 (445)
T ss_pred cCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCE
Confidence 89999999999999999999988999999999999999999984 47754
No 43
>KOG1401|consensus
Probab=99.95 E-value=1.1e-28 Score=187.39 Aligned_cols=115 Identities=26% Similarity=0.321 Sum_probs=102.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cc----cccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FV----PQQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~----~~~~~~~~~T~~~ 71 (119)
++|+++|++||+|||||||||+|.+|+++++++. |||.|++|.| +||+|+++. ++ ...+.+|++||+|
T Consensus 234 k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~--PDI~t~aK~L-~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~g 310 (433)
T KOG1401|consen 234 KECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVT--PDITTVAKPL-GGGLPIGATGVRDKVAEMISPGDHLYHGGTFSG 310 (433)
T ss_pred HHHhhcCceEEeehhhhCccccchHHHHHHhCcC--Ccceeehhhc-cCCceeEEEeehHHHHhhcCCCCccccCcccCC
Confidence 3799999999999999999999999999999998 9999999999 788877543 22 2234567999999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS 118 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~ 118 (119)
||++|+++..+|+.+.++++++++.+.++.|+++|.+...++|+.++
T Consensus 311 npLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~ 357 (433)
T KOG1401|consen 311 NPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSIC 357 (433)
T ss_pred ChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCcee
Confidence 99999999999999999999999999999999999999888887553
No 44
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.95 E-value=2.8e-28 Score=190.50 Aligned_cols=113 Identities=26% Similarity=0.391 Sum_probs=98.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||||||||+|++|+++++++. |||+|+||++ +||++++. .+.+. ....+.+||++||+
T Consensus 235 ~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~--pDi~t~gK~l-~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl 311 (445)
T PRK08593 235 KFCREHGILFAVDDIQQGLGRTGKWSSISHFNIT--PDLMSFGKSL-AGGMPMSAIVGRKEIMESLEAPAHLFTTGANPV 311 (445)
T ss_pred HHHHHcCCEEEEechhhCCCcCchHHHHHhcCCC--CCEeeecccc-cCCcccEEEEEcHHHHhhhccCCCCCCCCCCHH
Confidence 4899999999999999999999999999999998 9999999999 57776543 22221 23356679999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+|++++++|++++++++.+++++++++|++.|+++.+++|.|
T Consensus 312 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v 353 (445)
T PRK08593 312 SCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFV 353 (445)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 999999999999999999999999999999999999889865
No 45
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.95 E-value=4.7e-28 Score=188.53 Aligned_cols=114 Identities=30% Similarity=0.436 Sum_probs=99.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccc---cc---ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEF---VP---QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~---~~---~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||||||||+|.+|+++++|+. |||+|+||++..+|++..+.+ .. ..+..+++||++||+
T Consensus 246 ~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~--PDi~~~gK~~~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl 323 (431)
T TIGR03251 246 ALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQ--PDIVAFGKKTQVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLV 323 (431)
T ss_pred HHHHHcCCEEEEecchhccCccchHHHHHhcCCC--CCEEEecccCccceEEecchHHHhhhhcccCccccCCCCCCCHH
Confidence 4899999999999999999999999999999998 999999999866677766542 11 113457899999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+|++++++|++++++++.+++++++++|+++|+++.+++|.+
T Consensus 324 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~ 365 (431)
T TIGR03251 324 DMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHL 365 (431)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999988999999999999999999998888833
No 46
>PRK06541 hypothetical protein; Provisional
Probab=99.95 E-value=5.6e-28 Score=189.49 Aligned_cols=112 Identities=23% Similarity=0.257 Sum_probs=96.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----c-cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----Q-QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~-~~~~~~~T~ 69 (119)
++|++||++||+|||||||||+|++|+++++|+. |||+||||++ +||+ +++. ++.+ . ....+.+||
T Consensus 249 ~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~--PDivt~gK~l-~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~ 325 (460)
T PRK06541 249 EICDRYDVLLVSDEVICAFGRLGEMFGCERFGYV--PDIITCAKGI-TSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTF 325 (460)
T ss_pred HHHHHcCCEEEEechhhCCCcCchhhhhhhcCCC--CCEEEecccc-cCCccceeEEEEcHHHHHHhhcCCCccccCCCC
Confidence 4899999999999999999999999999999998 9999999999 5787 4432 2221 1 122466899
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
++||++|++++++|++++++++++++++++++|+++|+++.+ +|.|
T Consensus 326 ~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v 371 (460)
T PRK06541 326 GGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIV 371 (460)
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCe
Confidence 999999999999999999889999999999999999999876 8764
No 47
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.95 E-value=3.5e-28 Score=191.18 Aligned_cols=109 Identities=22% Similarity=0.255 Sum_probs=96.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~ 71 (119)
+||++||++||+||||||| |+|.+|+++++|+. |||+||||+| +||+|++. ++++ ..+.++++||++
T Consensus 274 ~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~--PDi~t~gK~l-ggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~g 349 (474)
T PLN02482 274 EITKENGALLVFDEVMTGF-RIAYGGAQEYFGIT--PDLTTLGKVI-GGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSG 349 (474)
T ss_pred HHHHHcCCEEEEeccccCe-ecCcchHhHHhCCC--CCEEEecchh-hCCCceEEEEEcHHHHHhhccCCCcccccCcch
Confidence 5899999999999999999 99999999999998 9999999999 57777643 2222 124567899999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES 113 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~ 113 (119)
||++|++++++|++++++++++++++++++|+++|+++..++
T Consensus 350 npl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~ 391 (474)
T PLN02482 350 NPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKA 391 (474)
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988999999999999999999998774
No 48
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.95 E-value=1.3e-27 Score=186.29 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=93.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~ 71 (119)
++|++||++||+||||||| |+|.+|++++++++ |||+||||+| +||++.+. ++.+ ....++++||++
T Consensus 229 ~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~--PDi~~~gK~l-ggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g 304 (433)
T PRK00615 229 QTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVK--PDITVYGKIL-GGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSG 304 (433)
T ss_pred HHHHHcCCEEEEEcccccc-cccHhHHHHhcCCC--CCeEEEcccc-cCCcceeeeeecHHHHhhhcCCCCcccCCCCcc
Confidence 4899999999999999999 99999999999998 9999999999 56665532 2322 223457789999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhc
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~ 112 (119)
||++|++++++|++++++++++++++++++|+++|+++.++
T Consensus 305 ~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~ 345 (433)
T PRK00615 305 NPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRS 345 (433)
T ss_pred cHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998899999999999999999998766
No 49
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.95 E-value=1.3e-27 Score=186.59 Aligned_cols=112 Identities=31% Similarity=0.433 Sum_probs=98.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||+|++|+++++++. ||++||||++ +||++.+. .+.......+.+||++||++
T Consensus 249 ~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~--pDivt~~K~l-~~G~p~gav~~~~~i~~~~~~~~~~T~~g~p~~ 325 (441)
T PRK05769 249 KLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVE--PDIITLAKAI-AGGLPLGAVIGRAELMFLPPGSHANTFGGNPVA 325 (441)
T ss_pred HHHHHcCCEEEEechhhCCCcccceehhhccCCC--CCEEEEcccc-cCCcccEEEEEehhhhhcCCCCCCCCCCcCHHH
Confidence 4799999999999999999999999999999998 9999999999 46766542 23333334678999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
|++++++|+++++ ++.+++++++++|++.|+++.+++|.+
T Consensus 326 ~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~ 365 (441)
T PRK05769 326 AAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFI 365 (441)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9999999999998 999999999999999999999889865
No 50
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.94 E-value=3.4e-27 Score=183.34 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=97.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||+|++|+++++++. |||+||||+|+++|++++. .+....+..+.+||++||++
T Consensus 226 ~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~--PDi~t~~K~l~~~G~pigav~~~~~i~~~~~~~~~~T~~gnp~~ 303 (425)
T PRK09264 226 KLCRKHDILLIVDDIQAGCGRTGTFFSFERAGIT--PDIVTLSKSISGYGLPMALVLIKPELDVWKPGEHNGTFRGNNLA 303 (425)
T ss_pred HHHHHcCcEEEEechhhCCccccHHHHHhhcCCC--CCEEEeccccCCCccceEEEEEchhhhccCCCccCCCCCCCHHH
Confidence 4899999999999999999999999999999998 9999999999543766542 23222334577899999999
Q ss_pred HHHHHHHH-HHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 76 VLLLKGII-DTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 76 ~a~a~a~l-~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
|++++++| ++++++++.+++++++++|+++|+++.+++|.+
T Consensus 304 ~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~ 345 (425)
T PRK09264 304 FVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGL 345 (425)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999 677777899999999999999999998888854
No 51
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.94 E-value=3.3e-27 Score=182.85 Aligned_cols=113 Identities=21% Similarity=0.262 Sum_probs=97.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~~~~~~~~T~~~~p~~ 75 (119)
++|++||++||+|||||||||+|++|+++++++. |||+|+||+|++||++++.. +....+..+.+||++||++
T Consensus 222 ~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~--PDi~~~~K~lg~~G~pigav~~~~~~~~~~~~~~~~T~~gnpl~ 299 (412)
T TIGR02407 222 KLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIE--PDIVCLSKSISGYGLPLALTLIKPELDVWKPGEHNGTFRGNNLA 299 (412)
T ss_pred HHHHHcCCEEEEechhhCCCccchhHHhcccCCC--CCEEEechhccCCccceeEEEEchhhhccCCCccCCCCCccHHH
Confidence 4899999999999999999999999999999998 99999999995337765432 2112234678899999999
Q ss_pred HHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 76 VLLLKGIIDT-IHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 76 ~a~a~a~l~~-i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
|+++.++|++ ++++++.+++++++++|+++|+++.+++|.
T Consensus 300 ~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~ 340 (412)
T TIGR02407 300 FVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPE 340 (412)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999995 878889999999999999999999988884
No 52
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.94 E-value=4.4e-27 Score=182.93 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=95.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc------cccc------cccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE------FVPQ------QAYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~------~~~~------~~~~~~~T 68 (119)
++|++||++||+|||||||||+|++|+++++++. |||+|+||++ +||+++.+. +.+. ....+.+|
T Consensus 236 ~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~--pDi~~~gK~l-~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T 312 (427)
T TIGR00508 236 ALCKQYDILLIADEIATGFGRTGKLFACEHAGVV--PDILCVGKAL-TGGYMTLSATVTTDKVAQTISSGEAGCFMHGPT 312 (427)
T ss_pred HHHHHcCCEEEEeccccCCCcCCccchhhhcCCC--CCEEEechhh-hcCcccceEEEEcHHHHHHHhcCCCCccccCCC
Confidence 4899999999999999999999999999999998 9999999999 789754322 2111 11236789
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
|++||++|++++++|++++++++++++++++++|+++|+++.. +|.
T Consensus 313 ~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-~~~ 358 (427)
T TIGR00508 313 FMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLRK-NPV 358 (427)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-CCC
Confidence 9999999999999999999889999999999999999999854 664
No 53
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.94 E-value=4.7e-27 Score=182.68 Aligned_cols=114 Identities=26% Similarity=0.346 Sum_probs=99.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+||||+||||+|++|+++++++. |||+||||++ ++|++++.. +.+ .....+++||++||+
T Consensus 235 ~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~--pDi~t~sK~l-g~G~pigav~~~~~i~~~~~~~~~~~T~~~np~ 311 (433)
T PRK08117 235 EICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVV--PDIMTIAKGI-ASGLPLSAVVASKELMEQWPLGSHGTTFGGNPV 311 (433)
T ss_pred HHHHHcCCEEEEecchhccCccccchhHhhcCCC--CCEeehhhhc-cCCCcceeEEEcHHHHhhccCCCCCCCCCcCHH
Confidence 4899999999999999999999999988999998 9999999999 577766432 222 223457789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+|++++++|++++++++++++++++++++++|+++.+++|.+.
T Consensus 312 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~ 354 (433)
T PRK08117 312 ACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIG 354 (433)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 9999999999998889999999999999999999988888543
No 54
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.94 E-value=4.6e-27 Score=182.76 Aligned_cols=114 Identities=27% Similarity=0.401 Sum_probs=100.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||||||||+|.+|+++++++. |||+||||+| +||++++. ++.+ ..+..+.+||++||+
T Consensus 226 ~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~--pDi~tlsK~l-~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl 302 (425)
T PRK07495 226 ELCDQHGILLIADEVQTGFARTGKLFAMEHHEVA--ADLTTMAKGL-AGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPL 302 (425)
T ss_pred HHHHHcCCEEEEechhhcCCcCCCceeecccCCC--CCEEeehhhh-cCCccceEEEEcHHHHhccCCCCcCCCCCCCHH
Confidence 4899999999999999999999999899999998 9999999999 67876543 2322 223457789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+|++++++|++++++++.+++++++++|+++|+++.+++|.+.
T Consensus 303 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 345 (425)
T PRK07495 303 GIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIA 345 (425)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence 9999999999999999999999999999999999998898653
No 55
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.94 E-value=7.2e-27 Score=179.88 Aligned_cols=113 Identities=25% Similarity=0.403 Sum_probs=97.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||||||||+|++++++++++. ||++|+||++ +||++++. .+.+. ....+.+||++||+
T Consensus 207 ~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~--pDi~t~~K~l-ggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~ 283 (397)
T TIGR03246 207 ELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT--PDILTSAKAL-GGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPL 283 (397)
T ss_pred HHHHHcCCEEEEechhhcCCccccchhhhhcCCC--CCEEEeehhh-hCCcceeEEEEcHHHHHhccCCCcCCCCCCCHH
Confidence 4899999999999999999999999999999998 9999999999 57877653 23222 23346789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
++++++++|++++++++.+++++++++|+++|+++..++|.+
T Consensus 284 ~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~ 325 (397)
T TIGR03246 284 ACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVF 325 (397)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 999999999999888999999999999999999988777643
No 56
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.94 E-value=9.5e-27 Score=180.70 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=100.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||+|||||+|++|+++++++. |||+||||+| +||++++.. +.+ .....+.+||++||+
T Consensus 226 ~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~--pDi~t~gK~l-~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl 302 (421)
T PRK09792 226 RLCDEHGIVMIADEVQSGFARTGKLFAMDHYADK--PDLMTMAKSL-AGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPL 302 (421)
T ss_pred HHHHHcCCEEEEeccccCCCCCCchhHHHhcCCC--CcEEEeehhh-cCCCceEEEEEcHHHHhccCCCCcCCCCCCCHH
Confidence 4899999999999999999999999999999987 9999999999 677776532 222 223457899999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+|+++++++++++++++.++++++++++++.|+++.+++|.+.
T Consensus 303 ~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~ 345 (421)
T PRK09792 303 AVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIA 345 (421)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999889999999999999999999999999754
No 57
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.94 E-value=1.3e-26 Score=177.20 Aligned_cols=94 Identities=27% Similarity=0.374 Sum_probs=83.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccccc--cccceeeccCCCHHHHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQ--QAYRVFNTWMGDPGKVLL 78 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~~--~~~~~~~T~~~~p~~~a~ 78 (119)
++|++||++||+||||||+ |+|++|+++++++. |||+|+||+| +||+|++..+... .+..|++||++||++|++
T Consensus 190 ~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~--PDiv~~gK~l-ggG~P~~a~~~~~~~~~~~~~~T~~gnp~~~aa 265 (364)
T PRK04013 190 DLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVE--PDIVTMGKGI-GNGVPVSLTLTNFDVERGKHGSTFGGNPLACKA 265 (364)
T ss_pred HHHHHcCCEEEEechhhcC-CCCchhHHHhcCCC--CCEEEecccc-cCCceeEEEEecccccCCCcCCCCCcCHHHHHH
Confidence 4799999999999999999 99999999999998 9999999999 6778776554331 235688999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHH
Q psy4800 79 LKGIIDTIHNENLLDRVQKT 98 (119)
Q Consensus 79 a~a~l~~i~~~~~~~~~~~~ 98 (119)
++++|++++++++.+++++.
T Consensus 266 a~a~l~~i~~~~l~~~~~~~ 285 (364)
T PRK04013 266 VAVTLRILRRERLVEKAGEK 285 (364)
T ss_pred HHHHHHHHHhccHHHHHHHH
Confidence 99999999999999998775
No 58
>KOG1403|consensus
Probab=99.94 E-value=1.4e-26 Score=171.42 Aligned_cols=113 Identities=27% Similarity=0.414 Sum_probs=100.0
Q ss_pred hhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc---ccccceeeccCCCH
Q psy4800 3 EKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP---QQAYRVFNTWMGDP 73 (119)
Q Consensus 3 ~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~---~~~~~~~~T~~~~p 73 (119)
.+.+|-++|+||||+||||.|+ .|++|.|+.. |||+|+||.| ++|.|++.. +.+ .....+|.||+|||
T Consensus 239 Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fi--PDIVtmgKpm-GNGhPVa~VattkeIA~Af~atgv~YFNTyGGnP 315 (452)
T KOG1403|consen 239 VRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFI--PDIVTMGKPM-GNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNP 315 (452)
T ss_pred HhcCCCeEEeehhhhcccccchhhhhhhhhccc--cchheecccC-CCCCeeeEEeccHHHHHHhccccceehhccCCCc
Confidence 4568999999999999999998 7999999988 9999999999 688887543 332 12346789999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800 74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS 118 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~ 118 (119)
++||+++++|+++++|+++++.+++|++|...|++++.+|++|-+
T Consensus 316 VsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD 360 (452)
T KOG1403|consen 316 VSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGD 360 (452)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceec
Confidence 999999999999999999999999999999999999999998753
No 59
>PLN00144 acetylornithine transaminase
Probab=99.94 E-value=2.7e-26 Score=176.24 Aligned_cols=114 Identities=26% Similarity=0.364 Sum_probs=99.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||+|||||+|.+++++++++. |||+||||+| ++|++++.. +.+ .....+.+||++||+
T Consensus 195 ~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~--PDi~t~sK~l-~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl 271 (382)
T PLN00144 195 ALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVE--PDIMTLAKPL-AGGLPIGAVLVTEKVASAINPGDHGSTFAGGPL 271 (382)
T ss_pred HHHHHcCCEEEEechhhCCCccchHhhhhhcCCC--CCEEEecccc-cCCcceEEEEEcHHHHhccCCCCCCCCCCCCHH
Confidence 5899999999999999999999999898899998 9999999999 677765432 222 123457789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
+|+++.++|++++++++.++++++++++++.|+++.+++|.+.
T Consensus 272 ~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~ 314 (382)
T PLN00144 272 VCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVK 314 (382)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 9999999999999999999999999999999999888888764
No 60
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.93 E-value=3.4e-26 Score=177.57 Aligned_cols=113 Identities=28% Similarity=0.384 Sum_probs=98.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||+|||||+|++|+++++++. ||++|+||++ +||++++. .+.+. ....+++||++||+
T Consensus 226 ~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~--pDiv~~sK~l-~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~ 302 (421)
T PRK06777 226 TLCDEHGILLIADEVQTGFARTGKLFAMEYYDVK--PDLITMAKSL-GGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPL 302 (421)
T ss_pred HHHHHcCCEEEEechhhCCccCCchhhhhhcCCC--CCEEeeehhh-cCCCceEEEEEcHHHHhccCCCCCCCCCCcCHH
Confidence 4899999999999999999999999999999998 9999999999 57876543 23222 23457789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+|++++++|++++++++.+++++++++|+++|+++.+++|.+
T Consensus 303 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i 344 (421)
T PRK06777 303 AVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAI 344 (421)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999999999989999999999999999999998888865
No 61
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.93 E-value=2.6e-26 Score=178.06 Aligned_cols=112 Identities=25% Similarity=0.351 Sum_probs=95.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-------cccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-------QAYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-------~~~~~~~ 67 (119)
++|++||++||+|||||||||+|++|+++++++. |||+++||++ +||+ +.+. ++.+. ....+.+
T Consensus 228 ~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~--pDi~~~~K~l-~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~ 304 (423)
T PRK05964 228 RICDRHGVLLIFDEIATGFGRTGTLFACEQAGVS--PDIMCLSKGL-TGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSP 304 (423)
T ss_pred HHHHHcCCEEEEechhhCCCcCcchhHHHhcCCC--CCeeeeehhh-hcCcccceEEEEcHHHHHhhhcCCcccccccCC
Confidence 4899999999999999999999999999999998 9999999999 6674 4432 22221 1224678
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
||++||++|++++++|++++++++.++++++++++++.|+++. ++|.|
T Consensus 305 T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~-~~~~i 352 (423)
T PRK05964 305 SYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFR-DLPGV 352 (423)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc-cCCCe
Confidence 9999999999999999999988999999999999999999884 47754
No 62
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.93 E-value=8.7e-26 Score=174.84 Aligned_cols=113 Identities=22% Similarity=0.293 Sum_probs=98.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||||||||+|.+|+++++++. ||++||||++ +||++++.. +.+. ....+.+||++||+
T Consensus 215 ~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~--pdi~t~~K~l-~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~ 291 (408)
T PRK04612 215 ALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVT--PDIVTLAKAL-GGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPL 291 (408)
T ss_pred HHHHHcCCEEEEeccccCCCcCCchhhhhhcCCC--CCEEEEcchh-cCCCceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence 4899999999999999999999998888888887 9999999999 577765433 2221 23356789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+|++++++|++++++++.+++++++++|+++|+++.+++|.|
T Consensus 292 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i 333 (408)
T PRK04612 292 AAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVF 333 (408)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 999999999999999999999999999999999999888765
No 63
>PRK07046 aminotransferase; Validated
Probab=99.93 E-value=6.2e-26 Score=177.70 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=94.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc----------cccce
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ----------QAYRV 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~----------~~~~~ 65 (119)
++|++||++||+|||+| | |+|.+++.+++|++ |||+||||+| +||+|++. ++++. ....+
T Consensus 246 ~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~--PDi~t~gK~l-ggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~ 320 (453)
T PRK07046 246 ELTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLE--PDFLVVGKPI-AGGVPCAVYGFSAELAERAQAAKASAPPGHSGI 320 (453)
T ss_pred HHHHHhCCEEEEEcccc-C-ccCCcchhHHhCCC--ccceeehhhh-cCCCcceeeeehHHHHHHHhhccccCCCCCcee
Confidence 58999999999999999 5 67777777889998 9999999999 67887653 22211 11247
Q ss_pred eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
.+||++||++|++++++|+++++++++++++++|++|+++|+++.++++.+
T Consensus 321 ~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~ 371 (453)
T PRK07046 321 GTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLP 371 (453)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 789999999999999999999998999999999999999999998888754
No 64
>KOG1405|consensus
Probab=99.93 E-value=4.5e-26 Score=171.33 Aligned_cols=118 Identities=50% Similarity=0.902 Sum_probs=112.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccccccccceeeccCCCHHHHHHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLK 80 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~~~~~~~~~T~~~~p~~~a~a~ 80 (119)
++|+||++.+|+||||||-|-||++|+++|++++.+||++||||-+.+|||.-...++...+..++.||-|+|.-+....
T Consensus 299 di~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gGffh~~~frpn~pYrifNTWmGdP~k~lll~ 378 (484)
T KOG1405|consen 299 DITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGFFHDEEFRPNEPYRIFNTWMGDPSKNLLLE 378 (484)
T ss_pred HHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCccccCcccCCCchHHHhhhhcCChHHHHHHH
Confidence 37999999999999999999999999999999999999999999998899988999999889999999999999999999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800 81 GIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS 118 (119)
Q Consensus 81 a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~ 118 (119)
++++.|+++++.+++...|++|..+|.+|+++||..++
T Consensus 379 ~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~ 416 (484)
T KOG1405|consen 379 EVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKIN 416 (484)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 99999999999999999999999999999999998764
No 65
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.93 E-value=1.6e-25 Score=173.61 Aligned_cols=113 Identities=24% Similarity=0.340 Sum_probs=99.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||++||||+|++++++++++. |||+||||++ ++|++++.. +.+. ....+.+||++||+
T Consensus 225 ~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~--pDi~~lsK~l-~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl 301 (420)
T TIGR00700 225 DWCREHGIVFIADEVQTGFARTGAMFACEHEGPE--PDLITTAKSL-ADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPL 301 (420)
T ss_pred HHHHHcCCEEEEEecccCCcccchhHHHhhcCCC--CCEEEeeccc-cCCcceEEEEecHHHHhhcCCCCcCCCCCcCHH
Confidence 5899999999999999999999999999999998 9999999999 578776432 3222 23457899999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+|++++++|++++++++.+++++++++++++|+++.+++|.+
T Consensus 302 ~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~ 343 (420)
T TIGR00700 302 ACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRI 343 (420)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999999999999999999998888864
No 66
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.92 E-value=4.4e-25 Score=170.38 Aligned_cols=113 Identities=22% Similarity=0.349 Sum_probs=97.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+||||+||||+|.+++++++++. ||++||||++ +||++++.. +.+. ....+.+||++||+
T Consensus 211 ~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~--pDi~t~sK~l-~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl 287 (406)
T PRK12381 211 ELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT--PDVLTTAKAL-GGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPL 287 (406)
T ss_pred HHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCC--CCEEEehhhh-hCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHH
Confidence 4899999999999999999999998888899998 9999999999 578776432 3322 23356789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+++++.++|++++++++++++++++++|++.|+++..++|.+
T Consensus 288 ~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 329 (406)
T PRK12381 288 ASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYGLF 329 (406)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 999999999999888999999999999999999997777643
No 67
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.92 E-value=5.6e-25 Score=171.87 Aligned_cols=113 Identities=31% Similarity=0.473 Sum_probs=97.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+||||+||||+|++++++++++. ||++||||+++ +|++++. .+.+. ....+.+|+++||+
T Consensus 232 ~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~--pDiitlsK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~ 308 (443)
T PRK08360 232 KILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVE--PDIITLGKPLG-GGLPISATIGRAEIMDSLPPLAHAFTLSGNPV 308 (443)
T ss_pred HHHHHcCCEEEEeccccCCCcCccchhhhhcCCC--CCEEEeccccc-CCceeEEEEEcHHHHhhhcCCCCCCCCCcCHH
Confidence 4899999999999999999999998888889998 99999999994 6665532 22222 23346789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
++++++++|+.++++++.+++++++++|++.|+++.+++|.+
T Consensus 309 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v 350 (443)
T PRK08360 309 ASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELI 350 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999999999988999999999999999999998888855
No 68
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.92 E-value=6e-25 Score=171.13 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=92.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc--------ccc-cee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ--------QAY-RVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~--------~~~-~~~ 66 (119)
++|++||++||+|||||||++++ +++.+++++. |||+|+||+| +||++.+. .+.+. .+. .+.
T Consensus 211 ~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~--PDi~t~gK~l-ggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~ 286 (431)
T PRK06209 211 RLCHENGALFILDEMITGFRWHM-RGAQKLYGIV--PDLSCFGKAL-GNGFAVSALAGKREYMELGGLEHTDRERVFLLS 286 (431)
T ss_pred HHHHHcCCEEEEEcccccCCcCc-chhhHHhCCC--cceeeehhhh-cCCcccEEEEEHHHHHhhhcccccCCCCceeec
Confidence 48999999999999999998753 4455568998 9999999999 56776542 22221 122 367
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+||++||++|++++++|++++++++++++++++++|++.|+++.+++|.+
T Consensus 287 ~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~ 336 (431)
T PRK06209 287 TTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQ 336 (431)
T ss_pred cCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999988878754
No 69
>PLN02624 ornithine-delta-aminotransferase
Probab=99.92 E-value=8.6e-25 Score=172.01 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=97.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccccc-----ccc-ccccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLKPE-----FVP-QQAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~~~-----~~~-~~~~~~~~T~~~~p 73 (119)
++|++||++||+||||+||||+|.+++++++++. ||+++|||++| || ++++.. +.. ..+..+++||++||
T Consensus 252 ~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~--pDiv~lsK~lg-gG~~pigav~~~~~i~~~~~~~~~~~T~~g~p 328 (474)
T PLN02624 252 ELCSKHNVLMIADEIQTGLARTGKMLACDWEEVR--PDVVILGKALG-GGVIPVSAVLADKDVMLCIKPGEHGSTFGGNP 328 (474)
T ss_pred HHHHHcCCEEEEeccccCcCcCcchhhHHhcCCC--CCEEEeccccc-CCCCcceeeeecHHHHhHhccCCcCCCCCCCH
Confidence 4899999999999999999999999988889987 99999999995 55 444332 222 23456788999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
++++++.++|+.++++++.+++++++++|+++|+++.+++|.+
T Consensus 329 l~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~ 371 (474)
T PLN02624 329 LASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKL 371 (474)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999988999999999999999999998888853
No 70
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.91 E-value=3e-24 Score=167.89 Aligned_cols=113 Identities=28% Similarity=0.396 Sum_probs=98.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+|||++||||+|.+++++++++. |||++|||++ ++|++++.. +.+ ..+..+++||++||+
T Consensus 247 ~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~--pDi~t~sK~l-~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l 323 (451)
T PRK06918 247 NICSEHGILFVADEIQTGFARTGKYFAIEHFDVV--PDLITVSKSL-GAGVPISGVIGRKEIMDESAPGELGGTYAGSPL 323 (451)
T ss_pred HHHHHcCCEEEEeccccCcCccCceehhHhcCCC--CCEEeeehhh-cCCCccEEEEEcHHHHhccCCCCcCcCCCcCHH
Confidence 4899999999999999999999998899999988 9999999999 577766432 222 223457899999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
++++++++|++++++++.+++++++++++++|+++.+++|.+
T Consensus 324 ~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~ 365 (451)
T PRK06918 324 GCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCI 365 (451)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 999999999999989999999999999999999998888754
No 71
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.91 E-value=2.3e-24 Score=166.02 Aligned_cols=110 Identities=21% Similarity=0.265 Sum_probs=97.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~ 71 (119)
+||++||++||+|||+||| |...+++.++||++ ||+.||||.+ +||+|++. ++++ ..+.+..+|++|
T Consensus 228 ~lt~e~G~lLI~DEViTGF-R~~~gGaq~~~gi~--PDlttlGKiI-GGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sg 303 (432)
T COG0001 228 ELTEEHGALLIFDEVITGF-RVALGGAQGYYGVE--PDLTTLGKII-GGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSG 303 (432)
T ss_pred HHHHHcCcEEEEecchhhc-ccCCcccccccCcC--cchhhhhhhh-cCCcceeeeccHHHHHhhhCCCCCccccCCCCC
Confidence 5899999999999999999 99889999999999 9999999999 79999853 3433 345567789999
Q ss_pred CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800 72 DPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGLGQESN 114 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l~~~~p 114 (119)
||+++++++++|+.+++ +..++++.+++++|++.|++..+++.
T Consensus 304 nplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g 347 (432)
T COG0001 304 NPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHG 347 (432)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999987 46899999999999999999987763
No 72
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.90 E-value=3.2e-24 Score=166.66 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=96.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~ 71 (119)
++|++||++||+||||+|+ |+|.+|+++++++. ||+++|||+++ +|++.+. .+.+ .....+++||++
T Consensus 225 ~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~--pDi~~~gK~l~-~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~ 300 (426)
T PRK00062 225 ELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVT--PDLTTLGKIIG-GGLPVGAFGGRREIMEQLAPLGPVYQAGTLSG 300 (426)
T ss_pred HHHHHcCCEEEEeechhcc-ccCCccHHHHhCCC--cchHhhhhHhh-CCCcceeeeEHHHHHHhhccCCCceecccCcC
Confidence 4899999999999999999 99988888889998 99999999994 6665432 2222 123457789999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP 117 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~ 117 (119)
||++|++++++|++++++++++++++++++++++|+++.+++|.+.
T Consensus 301 ~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (426)
T PRK00062 301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPL 346 (426)
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 9999999999999999888999999999999999999988887653
No 73
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.90 E-value=2.3e-23 Score=159.81 Aligned_cols=110 Identities=30% Similarity=0.418 Sum_probs=93.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+||+|+||||+|++++++++++. ||++||||++ ++|++++. .+.+. ....+.+||++||+
T Consensus 211 ~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~--pDi~t~sK~l-~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~ 287 (398)
T PRK03244 211 EITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVT--PDVVTLAKGL-GGGLPIGACLAFGPAADLLTPGLHGSTFGGNPV 287 (398)
T ss_pred HHHHHcCCEEEEeccccCCcccchHHhhhhhCCC--CCEEEEchhh-hCCcccEEEEEcHHHHhhccCCCCcCCCCCCHH
Confidence 4899999999999999999999998888888988 9999999999 46666543 23222 23346789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
+++++.++|++++++++.+++++++++|++.|+++ .+|.
T Consensus 288 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~ 326 (398)
T PRK03244 288 ACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL--GHPL 326 (398)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--CCCc
Confidence 99999999999988899999999999999999986 3554
No 74
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.90 E-value=1.3e-23 Score=162.64 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=95.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~ 71 (119)
++|++||++||+||||+|| |+|.+|+++++++. ||++||||+++ +|++++. .+.+ .....+++||++
T Consensus 223 ~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~--pDi~t~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~ 298 (423)
T TIGR00713 223 ALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVE--PDLTTLGKIIG-GGLPVGAFGGRREIMERLAPEGPVYQAGTLSG 298 (423)
T ss_pred HHHHHhCCEEEEEcccccc-ccCcchhHHHhCCC--cchhhhhhhhc-CCCceeeeeEHHHHHHhhCcCCCeeeccCCCC
Confidence 4899999999999999999 99988888889998 99999999995 6665432 2222 113457789999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
||++|++++++|+.++++++.++++++++++++.|+++.++++.+
T Consensus 299 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 343 (423)
T TIGR00713 299 NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIP 343 (423)
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988899999999999999999988877755
No 75
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=158.29 Aligned_cols=112 Identities=29% Similarity=0.369 Sum_probs=95.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||++||+||||+||||+|++++++++++. ||++||||++ ++|++++. .+.+ .....+++||++||+
T Consensus 203 ~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~--pdi~t~sK~l-~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~ 279 (389)
T PRK01278 203 QLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVT--PDIMAVAKGI-GGGFPLGACLATEEAAKGMTPGTHGSTYGGNPL 279 (389)
T ss_pred HHHHHcCCEEEEeccccCCCcCCcceeecccCCC--CCEEEEehhc-cCCcceEEEEEcHHHHhccCCCCCCCCCCccHH
Confidence 4899999999999999999999998888888988 9999999999 57766543 2222 223456789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
++++++++|++++++++.+++++++++++++|+++.+++|.
T Consensus 280 ~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 320 (389)
T PRK01278 280 AMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPD 320 (389)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999988889999999999999999998777773
No 76
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.88 E-value=2.1e-22 Score=154.80 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=90.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+||+|+||||+|++++++++++. ||+++|||++|+||++++. ++.+. ....+.+||++||+
T Consensus 214 ~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~--pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~ 291 (396)
T PRK04073 214 ELCKEENVLFIADEIQTGLGRTGKLFACDWDNVT--PDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPL 291 (396)
T ss_pred HHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCC--CCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHH
Confidence 4799999999999999999999998888888887 9999999999655455432 23222 23356789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
++++++++|+.++++++.+++++++++|++.|+++
T Consensus 292 ~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l 326 (396)
T PRK04073 292 ACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI 326 (396)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988889999999999999999986
No 77
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.87 E-value=2.7e-22 Score=154.32 Aligned_cols=108 Identities=26% Similarity=0.399 Sum_probs=89.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||+++|+||||+||||+|++++++++++. ||++|+||++++|+++++ +.+.+. ....+.+||++||+
T Consensus 214 ~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~--~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~ 291 (401)
T TIGR01885 214 ELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVK--PDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPL 291 (401)
T ss_pred HHHHHcCCEEEEechhhCCCccchhhHHhhcCCC--CCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHH
Confidence 4899999999999999999999998888888887 999999999953334432 223222 22345679999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
+++++.++|++++++++.+++++++++|++.|+++.
T Consensus 292 ~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~ 327 (401)
T TIGR01885 292 ACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP 327 (401)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999888899999999999999999874
No 78
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.87 E-value=8.3e-22 Score=150.15 Aligned_cols=113 Identities=29% Similarity=0.391 Sum_probs=93.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||+++|+||+|+||||+|+++.++++++. ||++||||+++ +|++.+ +.+.+. ....+.+||++||+
T Consensus 195 ~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~--~di~t~sK~l~-~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~ 271 (377)
T PRK02936 195 TLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD--PDIVTVAKGLG-NGIPVGAMIGKKELGTAFGPGSHGSTFGGNPL 271 (377)
T ss_pred HHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC--CcEEEEccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHH
Confidence 4799999999999999999999998888888887 99999999995 665543 223222 23346689999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+++++.++|+.+++++++++++++++++++.|+++.+++|.+
T Consensus 272 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 313 (377)
T PRK02936 272 AMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECV 313 (377)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 999999999999777899999999999999999876666653
No 79
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.86 E-value=1.7e-21 Score=148.70 Aligned_cols=113 Identities=25% Similarity=0.341 Sum_probs=94.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||+++|+||+++||||+|.++.++++++. |||+||||++ ++|++++. .+.+. ....+.+||++||+
T Consensus 193 ~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~--pdi~t~sK~l-~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~ 269 (375)
T PRK04260 193 DYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE--PDIFTLAKGL-ANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKL 269 (375)
T ss_pred HHHHHcCCEEEEechhhCCCcccchhhhHhhCCC--CCEEEecccc-cCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHH
Confidence 4799999999999999999999998888888988 9999999999 55655432 22221 22346789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+++++.++|+.+++++++++++++++++++.|+++..++|.+
T Consensus 270 ~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (375)
T PRK04260 270 SMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETV 311 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 999999999999888899999999999999999987777643
No 80
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.85 E-value=5e-21 Score=147.51 Aligned_cols=112 Identities=24% Similarity=0.399 Sum_probs=94.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||+++|+|||++|+||+|++++++++++. |||.+|||++ ++|++++. .+.+. ....+.+||+++|+
T Consensus 212 ~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~--pdi~s~sK~l-~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~ 288 (403)
T PRK05093 212 ELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVT--PDILTSAKAL-GGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPL 288 (403)
T ss_pred HHHHHcCCEEEEechhhCCCCCccchhhhhcCCC--CCEEEecccc-cCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHH
Confidence 4899999999999999999999998877888988 9999999999 47776643 23222 23356679999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
.++++.++|+.++++++.+++++++++|++.|+++..+++.
T Consensus 289 ~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 329 (403)
T PRK05093 289 ACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGV 329 (403)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999988889999999999999999998655543
No 81
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.84 E-value=8.7e-21 Score=145.41 Aligned_cols=112 Identities=25% Similarity=0.370 Sum_probs=92.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccc-----cccccc-cccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLK-----PEFVPQ-QAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~-----~~~~~~-~~~~~~~T~~~~p 73 (119)
++|++||++||+||+++|+||+|+++..+++++. ||++++||++ ++|+ +++ +.+.+. ....+.+||+++|
T Consensus 206 ~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~--pd~~~~sK~l-~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~ 282 (400)
T PTZ00125 206 ELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVK--PDIVLLGKAL-SGGLYPISAVLANDDVMLVIKPGEHGSTYGGNP 282 (400)
T ss_pred HHHHHcCCEEEEeccccCCCccchhhHHHhcCCC--CCEEEEcccc-cCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCH
Confidence 4799999999999999999999998888888887 9999999999 5555 332 223222 2234567899999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
+.++++.++|+.++++++.+++++++++++++|+++...+|.
T Consensus 283 ~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 324 (400)
T PTZ00125 283 LACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPW 324 (400)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999988889999999999999999998665654
No 82
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.84 E-value=1.8e-20 Score=145.62 Aligned_cols=113 Identities=27% Similarity=0.423 Sum_probs=97.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc-ccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP-QQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~-~~~~~~~~T~~~~p~ 74 (119)
++|++||+++|.||+++|+||+|.+++++++++. |||.+|||++ ++|++++. .+.+ .....+.+|+++||+
T Consensus 227 ~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~--pdi~s~sK~l-~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~ 303 (425)
T PRK08088 227 ALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVA--ADLTTFAKSI-AGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPI 303 (425)
T ss_pred HHHHHcCCEEEEeccccCCCcCcchhHHhhcCCC--CCEEEEeccc-cCCCcceeeEecHHHHhhcCCCCCCCCCCcCHH
Confidence 4899999999999999999999998888888887 9999999999 57775532 2222 223446789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
.++++.++|+.++.+++.+++++.++++++.|+++.+++|.+
T Consensus 304 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 345 (425)
T PRK08088 304 ACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEI 345 (425)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999999999888999999999999999999999888865
No 83
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.83 E-value=2.1e-20 Score=142.85 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=94.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++||++||+||+++||||+|.+++++.+++. ||+++|||+++ +|++++. .+.+. ....+.+||++||+
T Consensus 210 ~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~--pdi~t~sK~~~-~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~ 286 (396)
T PRK02627 210 ELCDENGILLILDEVQTGMGRTGKLFAYQHYGIE--PDIMTLAKGLG-GGVPIGAVLAKEKVADVFTPGDHGSTFGGNPL 286 (396)
T ss_pred HHHHHcCCEEEEechhcCCCccCceeeehhcCCC--CCEEEEcchhh-CCcccEEEEEcHHHHhccCCCCCCCCCCCCHH
Confidence 4799999999999999999999988777888887 99999999995 6665532 23222 22346789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+++++.++|+.++++++.++++++++++++.|+++..++|.+
T Consensus 287 ~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (396)
T PRK02627 287 ACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGI 328 (396)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999999999888899999999999999999987767643
No 84
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.83 E-value=2.4e-20 Score=143.03 Aligned_cols=111 Identities=32% Similarity=0.454 Sum_probs=93.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc---cccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ---QAYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~---~~~~~~~T~~~~ 72 (119)
++|++||+++|+||+++||||+|.++.++++++. ||++++||+++ +|++++ +.+.+. ....+.+|+++|
T Consensus 219 ~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~--~d~~t~sK~l~-~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 295 (413)
T cd00610 219 ELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLGKGLG-GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGN 295 (413)
T ss_pred HHHHHcCCEEEEeccccCCCcCcchhhHhhcCCC--CCeEEEccccc-CccccEEEEEcHHHHHhhccCCCCCCCCCCcC
Confidence 4799999999999999999999998888888987 99999999994 455443 223332 344566899999
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800 73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN 114 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p 114 (119)
|++++++.++|++++++++.++++++++++++.|+++...++
T Consensus 296 ~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 337 (413)
T cd00610 296 PLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHP 337 (413)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999998888999999999999999998876544
No 85
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.82 E-value=7.2e-20 Score=140.59 Aligned_cols=107 Identities=21% Similarity=0.373 Sum_probs=89.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cc-----ccccccc-cccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FL-----KPEFVPQ-QAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~-----~~~~~~~-~~~~~~~T~~~~p 73 (119)
++|++||++||+||+|+|+|++|.+++.+++++. ||++++||++ +||+ ++ .+++.+. ....+++||++||
T Consensus 215 ~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~--~D~~~~~K~l-~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~ 291 (401)
T PRK00854 215 ELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIE--ADVTLIGKAL-SGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNP 291 (401)
T ss_pred HHHHHcCCEEEEechhhCCCCCchHhHHhhcCCC--CCEEEecccc-cCCccCeEEEEEcHHHHhcccCCCCCCCCCcCH
Confidence 4799999999999999999999998777788987 9999999999 6775 32 2223222 2234667999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800 74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
+++++++++|+.++++++.++++++++++++.|+++.
T Consensus 292 ~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~ 328 (401)
T PRK00854 292 LACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIR 328 (401)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999888889999999999999999873
No 86
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.75 E-value=4.9e-18 Score=130.75 Aligned_cols=106 Identities=25% Similarity=0.366 Sum_probs=86.9
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEE--EEchhhc-cCccccccc-----cccccccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~ 69 (119)
+||++|+++|++||+|. | +|..|++ ..+++|+. ...||+ ||||++| .|||++.+. +.+..++++|||
T Consensus 195 ~L~~ky~a~L~VDEAHa~Gv~G~~GrG-~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~v~g~~~~~d~L~~~ar~~ifSt- 272 (388)
T COG0156 195 ELAEKYGALLYVDEAHAVGVLGPNGRG-LAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFST- 272 (388)
T ss_pred HHHHHhCcEEEEEccccccccCCCCcc-HHHHhCCCCccceEEEEEchhhhcccCceeeCcHHHHHHHHHhCCceeccC-
Confidence 48999999999999974 4 4555555 56788987 223565 9999999 799998653 455678899999
Q ss_pred CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~ 108 (119)
+.+|..++++.++|+++++ ++.+++++++.+++++.++.
T Consensus 273 alpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~ 312 (388)
T COG0156 273 ALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA 312 (388)
T ss_pred CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999986 47889999999999966665
No 87
>PLN02822 serine palmitoyltransferase
Probab=99.71 E-value=2.5e-17 Score=130.02 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=84.6
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEEE--Echhhc-cCccccccc-ccccc-ccceeeccCC-
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIVT--FSKKMQ-LGGYFLKPE-FVPQQ-AYRVFNTWMG- 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~t--~gK~lg-~gG~~~~~~-~~~~~-~~~~~~T~~~- 71 (119)
++|++||++||+||+|+ | +|++|++ .++++++. ..|||++ |||++| .||+++.+. +.+.. ...+..||++
T Consensus 269 ~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~dii~~s~sKalg~~GG~i~g~~~ii~~~~~~~~~~~fsa~ 347 (481)
T PLN02822 269 RLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSAS 347 (481)
T ss_pred HHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeEEEecchhhhhhCCeEEEcCHHHHHHHHhcCCceeeccc
Confidence 48999999999999997 3 6888876 67889983 2489987 889997 588887643 43321 2234445555
Q ss_pred -CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 -DPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 -~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
+|..+++++++|+.+++ ++.++++++++++|++.|+++
T Consensus 348 lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~ 387 (481)
T PLN02822 348 LPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDI 387 (481)
T ss_pred cCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 48899999999999876 678899999999999999875
No 88
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.68 E-value=1.2e-16 Score=123.16 Aligned_cols=109 Identities=21% Similarity=0.230 Sum_probs=80.5
Q ss_pred ChhhhhCCEEEEccccc--cccCCCcchhhhhcCCCCCC----CEEEE--chhhc-cCccccc-ccccccc-ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT--GGGPCGKFWCHEHFDLEESP----DIVTF--SKKMQ-LGGYFLK-PEFVPQQ-AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t--G~Gr~G~~~~~~~~g~~~~p----Di~t~--gK~lg-~gG~~~~-~~~~~~~-~~~~~~T~ 69 (119)
++|++||++||+||+|+ ++|++|+ |+++++|+. | ||+++ +|++| .||++.. +.+.+.. ...+.+||
T Consensus 162 ~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~--p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~ 238 (392)
T PLN03227 162 ALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLK--PMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCF 238 (392)
T ss_pred HHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCC--CCCCceEEEeechhhhhccCcEEecCHHHHHHHHHhCcCccc
Confidence 48999999999999997 3566666 578999997 7 99864 57775 5676653 3444322 22345566
Q ss_pred CCC--HHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800 70 MGD--PGKVLLLKGIIDT-IHNENLLDRVQKTGDILLNVRLGLGQESN 114 (119)
Q Consensus 70 ~~~--p~~~a~a~a~l~~-i~~~~~~~~~~~~g~~l~~~L~~l~~~~p 114 (119)
+++ |..+++++++++. ++++++++++++++++|+++|++ ..+|
T Consensus 239 ~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~--~~~~ 284 (392)
T PLN03227 239 SASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN--SSHP 284 (392)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh--cCCc
Confidence 765 8888888877755 55678999999999999999986 3455
No 89
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.67 E-value=2.5e-16 Score=121.18 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=83.0
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~ 70 (119)
++|++||++||+||+|+ | +|+.|.++ .++.++...||++ ||||++| .||++..+ .+.+ ..+.+.+ |.+
T Consensus 202 ~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~~~~~~~~~~~l~~~~~~~~~-t~~ 279 (407)
T PRK09064 202 DLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIF-TTS 279 (407)
T ss_pred HHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCceEecCHHHHHHHHHhCccccc-cCc
Confidence 48999999999999997 7 68988765 5667765458988 9999997 57887653 2322 2233333 448
Q ss_pred CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|.++++++++++.+++. ..+++++++.++|++.|+++
T Consensus 280 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (407)
T PRK09064 280 LPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA 319 (407)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999865 34578999999999999875
No 90
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.66 E-value=7.1e-16 Score=117.23 Aligned_cols=110 Identities=32% Similarity=0.477 Sum_probs=87.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~ 74 (119)
++|++|++++|+||+++|||+.|.++.++..++. ||++||||+++ +|+.++ +.+.+. ....+..+|+.||+
T Consensus 198 ~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~--~d~~t~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (379)
T TIGR00707 198 EICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIE--PDIITLAKGLG-GGVPIGATLAKEEVAEAFTPGDHGSTFGGNPL 274 (379)
T ss_pred HHHHHcCCEEEEeccccCCCccchhhhHHhcCCC--CCEEEEccccc-CCcccEEEEEcHHHHhhhcCCCCCCCCCCCHH
Confidence 4799999999999999999999876666667877 99999999995 654432 223222 22234567889999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcC
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES 113 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~ 113 (119)
+++++.++|+.++++++.++++++.++++++|+++..++
T Consensus 275 ~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (379)
T TIGR00707 275 ACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNY 313 (379)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999877888999999999999998875443
No 91
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.66 E-value=3e-16 Score=123.49 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=81.1
Q ss_pred ChhhhhCCEEEEccccccccCCCc--chhhhhcCCCCCCCEE--EEchhhc-cCccccccc-----cccccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK--FWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~~ 70 (119)
+||++||++||+||+|+ +|+.|. .|..+++|+....||+ ||||++| .|||++.+. +.+..+.+++|| +
T Consensus 273 ~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGfi~gs~~~~~~l~~~~~~~ifSt-a 350 (476)
T PLN02955 273 QLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFST-A 350 (476)
T ss_pred HHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCceeecHHHHHHHHHHhCCCCeecc-c
Confidence 48999999999999975 445554 4567889987334444 9999997 699988643 344567788888 8
Q ss_pred CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHH
Q psy4800 71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNV 105 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~ 105 (119)
.+|..++++++++++++++ ..+++++++.++|++.
T Consensus 351 lpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~ 386 (476)
T PLN02955 351 IPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL 386 (476)
T ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 8899999999999998654 5678899999999984
No 92
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.64 E-value=1.4e-15 Score=117.07 Aligned_cols=107 Identities=24% Similarity=0.261 Sum_probs=80.8
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~ 70 (119)
++|++||++||+||+|+ | +|+.|.+ ..+++++...||++ ||+|++| .||++..+ .+.+ ..+.+.+ |.+
T Consensus 201 ~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~~GG~i~~~~~~~~~l~~~~~~~~~-t~~ 278 (402)
T TIGR01821 201 DLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLMHRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIF-TTS 278 (402)
T ss_pred HHHHHcCCEEEEeCcccccccCCCCCc-cchhccCCCCCeEEEEechhhhccCCceeecCHHHHHHHHHhCcCcee-cCc
Confidence 47999999999999997 6 4677654 34666765458988 9999997 48887643 3322 2233344 448
Q ss_pred CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
++|.++++++++|+.+++. .+.++++++.+++++.|+++
T Consensus 279 ~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (402)
T TIGR01821 279 LPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL 318 (402)
T ss_pred CCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998865 45667789999999999876
No 93
>KOG1359|consensus
Probab=99.62 E-value=1.7e-15 Score=112.43 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=92.8
Q ss_pred ChhhhhCCEEEEcccc-cc-ccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccccc-----cccccccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQ-TG-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE-----FVPQQAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~-tG-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~-----~~~~~~~~~~~T~ 69 (119)
+|++|||++|++||.| || ||.+|.+ ..|.+|+...+||+ |+||++| .|||...+. +.+..+++.||+
T Consensus 217 ~La~kYgaLlfiDecHaTgf~G~tGrG-t~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llrqr~RpylFSn- 294 (417)
T KOG1359|consen 217 QLAKKYGALLFIDECHATGFFGETGRG-TAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQRSRPYLFSN- 294 (417)
T ss_pred HHHHhcCcEEEEeecccceeecCCCCC-hHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHHhcCCceeecC-
Confidence 4789999999999999 57 5888865 66889988889998 9999998 689987543 445677888998
Q ss_pred CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh-----hhcCCCC
Q psy4800 70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL-----GQESNLQ 116 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l-----~~~~p~i 116 (119)
+.+|..+..+.++++.+.. .....+.+.+.++|++..+.. .+.||++
T Consensus 295 slppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg~~hPI~ 347 (417)
T KOG1359|consen 295 SLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGASHPIC 347 (417)
T ss_pred CCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecCCCCCcc
Confidence 8999999999999998764 467778889999999988765 2456653
No 94
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.62 E-value=2.5e-15 Score=115.92 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=81.8
Q ss_pred ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~ 70 (119)
++|++||+++|+||+|+ |+ |++|.++ .++.++...+||+ ||||++| .||+++.+ .+.+ ..+.+. .|++
T Consensus 201 ~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~~GG~~~~~~~~~~~l~~~~~~~~-~t~~ 278 (406)
T PRK13393 201 DVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFI-FTTS 278 (406)
T ss_pred HHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcccCceeeCCHHHHHHHHHhCcCce-ecCc
Confidence 47999999999999997 85 9998765 4777776557887 9999997 58887643 2322 222222 3558
Q ss_pred CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
++|.+++++.++|+.+++. ..++++++++++|++.|+++
T Consensus 279 ~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (406)
T PRK13393 279 LPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA 318 (406)
T ss_pred cCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998754 34466789999999999875
No 95
>KOG1360|consensus
Probab=99.47 E-value=1.2e-13 Score=106.02 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=85.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cCccccccc-----cccccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~~ 70 (119)
++++|||++..+||||. .|-.|.. |.-|+-|+-.+.||+ |+||++| .|||+.+.. +....+.++|+| +
T Consensus 327 Dvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGYIAat~~LvDmiRSyAaGFIFTT-S 404 (570)
T KOG1360|consen 327 DVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIFTT-S 404 (570)
T ss_pred HHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhcccccceehhhhhHHHHHHHhcCceEEec-C
Confidence 36789999999999975 4445542 345778888789999 9999999 799998643 334567888888 9
Q ss_pred CCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|..++.|++++++++.+ .+++.-+++.+++++.|.++
T Consensus 405 LPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~ 446 (570)
T KOG1360|consen 405 LPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL 446 (570)
T ss_pred CChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999754 35555678889999999887
No 96
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.47 E-value=2.5e-13 Score=104.87 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=79.4
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~ 70 (119)
++|++||+++|+||+|+ | +|+.|.+. .++.++...+|++ +|+|++| .||++..+ .+.+ ....+++++ +
T Consensus 202 ~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~~GG~~~~~~~~~~~l~~~~~~~~~s~-~ 279 (410)
T PRK13392 202 DLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTT-A 279 (410)
T ss_pred HHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhcccchhhcCHHHHHHHHHhCcchhccC-c
Confidence 47999999999999997 6 47777654 4556665458887 9999998 67887643 3322 233344444 7
Q ss_pred CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|+.++++.++|+.+++. ...++++++.+++++.|+++
T Consensus 280 ~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (410)
T PRK13392 280 LPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN 319 (410)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 8889999999999988754 34566888899999999875
No 97
>PRK07505 hypothetical protein; Provisional
Probab=99.42 E-value=5.5e-13 Score=102.81 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred ChhhhhCCEEEEcccc--ccccCCCcchhhhhcCC-CCCCCEE----EEchhhc-cCccccc-c-ccccc-cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQ--TGGGPCGKFWCHEHFDL-EESPDIV----TFSKKMQ-LGGYFLK-P-EFVPQ-QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~--tG~Gr~G~~~~~~~~g~-~~~pDi~----t~gK~lg-~gG~~~~-~-~~~~~-~~~~~~~T~ 69 (119)
++|++||++||+||+| +|+||+|.++..+++++ . ||.+ +++|+++ +||+++. + .+... ....+.+||
T Consensus 203 ~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~--~d~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~t~ 280 (402)
T PRK07505 203 RLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRL--NERTIIAASLGKAFGASGGVIMLGDAEQIELILRYAGPLAF 280 (402)
T ss_pred HHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCC--CCCeEEEEechhhhhccCeEEEeCCHHHHHHHHHhCCCcee
Confidence 4899999999999998 57899998877788886 4 7744 8999997 4577642 2 33221 112233455
Q ss_pred CC--CHHHHHHHHHHHHHHhhhcH
Q psy4800 70 MG--DPGKVLLLKGIIDTIHNENL 91 (119)
Q Consensus 70 ~~--~p~~~a~a~a~l~~i~~~~~ 91 (119)
++ +|++++++.++++++.++.+
T Consensus 281 ~~~~~~~a~aa~~a~l~~~~~~~~ 304 (402)
T PRK07505 281 SQSLNVAALGAILASAEIHLSEEL 304 (402)
T ss_pred CCCCCHHHHHHHHHHHHHHhccCc
Confidence 44 56899999999998765543
No 98
>PLN02483 serine palmitoyltransferase
Probab=99.35 E-value=3.8e-12 Score=100.91 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=77.0
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEE--EEchhhc-cCcccccc-ccccc----cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIV--TFSKKMQ-LGGYFLKP-EFVPQ----QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~--t~gK~lg-~gG~~~~~-~~~~~----~~~~~~~T~ 69 (119)
++|++||++||+||+|+ | +|++|.+ ..+++++. ...||+ +|+|++| .||++..+ .+.+. .+...+++
T Consensus 264 ~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~~GG~i~~~~~li~~l~~~~~~~~~~~- 341 (489)
T PLN02483 264 AVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYAT- 341 (489)
T ss_pred HHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccCcEEEEecchhcccCceEEEcCHHHHHHHHHhCccccccC-
Confidence 47999999999999986 3 5777765 45677775 225777 9999998 68888753 33332 11122233
Q ss_pred CCCHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNE-------NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~-------~~~~~~~~~g~~l~~~L~~l 109 (119)
..+|..++++.++|+++..+ +.+++++++.++|++.|+++
T Consensus 342 ~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~ 388 (489)
T PLN02483 342 SMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM 388 (489)
T ss_pred CcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC
Confidence 46788888899999987632 34567889999999999885
No 99
>PRK07179 hypothetical protein; Provisional
Probab=99.29 E-value=1.7e-11 Score=94.57 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=73.6
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCccccc-cccccc----cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLK-PEFVPQ----QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~-~~~~~~----~~~~~~~T~~ 70 (119)
++|++||++||+||+|+ | +|++|.++ .+++++...+|++ +++|++| .+|++.. +.+.+. ..+..+++ +
T Consensus 205 ~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~~S~sK~~g~~~G~l~~~~~~~~~~~~~~~~~~~~~-t 282 (407)
T PRK07179 205 DIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSS-T 282 (407)
T ss_pred HHHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEEeechHhhhccCeEEEeCHHHHHHHHHhCcCeeeCC-C
Confidence 48999999999999997 3 45666553 4567775346886 5799997 4555553 233221 11222222 3
Q ss_pred CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|..++++.++++.+++. +.+++++++.++|++.|+++
T Consensus 283 ~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~ 322 (407)
T PRK07179 283 LLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL 322 (407)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 3466677778889988765 57788999999999999876
No 100
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.27 E-value=2.7e-11 Score=91.89 Aligned_cols=108 Identities=22% Similarity=0.259 Sum_probs=75.8
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCC---EEEEchhhc-cCcccccc-ccccc---cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPD---IVTFSKKMQ-LGGYFLKP-EFVPQ---QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pD---i~t~gK~lg-~gG~~~~~-~~~~~---~~~~~~~T~~ 70 (119)
++|++||+++|+||+|. | +++.|..+ ....++...+| +.+++|+++ .||++..+ .+.+. ....+..+.+
T Consensus 192 ~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~ 270 (385)
T PRK05958 192 ALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTA 270 (385)
T ss_pred HHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceEEEEechhhcccCCcEEEcCHHHHHHHHHhCccceecCC
Confidence 47999999999999995 4 45556543 23334433366 459999997 46766543 23221 1112334447
Q ss_pred CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|++++++.++|+.+++. ++.+++.++.+++.+.|+++
T Consensus 271 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (385)
T PRK05958 271 LPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL 310 (385)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999988764 67788999999999999875
No 101
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.23 E-value=5.8e-11 Score=90.46 Aligned_cols=107 Identities=25% Similarity=0.369 Sum_probs=74.2
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCE--EEEchhhc-cCcccccc-ccccc----cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDI--VTFSKKMQ-LGGYFLKP-EFVPQ----QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi--~t~gK~lg-~gG~~~~~-~~~~~----~~~~~~~T~~ 70 (119)
++|++||+++|+||++. | +++.|.+ ...++++....|+ .+|+|+++ .||++..+ .+.+. ...+..+| .
T Consensus 187 ~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~-~ 264 (385)
T TIGR01825 187 ELAERYGAVTYVDDAHGSGVMGEAGRG-TVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFST-A 264 (385)
T ss_pred HHHHHhCCEEEEECcccccCcCCCCCc-cHhhcCCCcCCcEEEEeccHHhhcCCCEEecCHHHHHHHHHhCccccccC-C
Confidence 47999999999999985 4 5655543 3445566512333 59999997 56877643 23221 12223333 5
Q ss_pred CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|..++++.++++.+.+ ++..++++++.+++.+.|+++
T Consensus 265 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 304 (385)
T TIGR01825 265 QPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL 304 (385)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 678888999999998754 467788899999999999875
No 102
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.20 E-value=5.9e-11 Score=90.73 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=71.7
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCC-CCCEEEEchhhc-cCcccc-cccc----ccccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEE-SPDIVTFSKKMQ-LGGYFL-KPEF----VPQQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~-~pDi~t~gK~lg-~gG~~~-~~~~----~~~~~~~~~~T~~~ 71 (119)
++|++||++|++||+|+ | +|+.|.++. ..++..+ .+|+.||+|++| .|+.++ .+.+ ....++..+++ +.
T Consensus 167 ~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~~~~~~~~~~~~~~~~s~-~~ 244 (370)
T PRK05937 167 ALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYSKALGSMGAALLSSSEVKQDLMLNSPPLRYST-GL 244 (370)
T ss_pred HHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEechhhhhcCceEEEcCHHHHHHHHHhCCCCeecC-CC
Confidence 47999999999999997 6 677776543 2334321 167789999997 233333 2322 11223344444 68
Q ss_pred CHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q psy4800 72 DPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~ 108 (119)
+|..+++..++++++++. ..+++++++.++|++.|..
T Consensus 245 ~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~ 283 (370)
T PRK05937 245 PPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS 283 (370)
T ss_pred CHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999753 3566788888888877754
No 103
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.17 E-value=8.7e-11 Score=93.07 Aligned_cols=106 Identities=17% Similarity=0.100 Sum_probs=69.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCcccccc-ccc---cccccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKP-EFV---PQQAYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~-~~~---~~~~~~~~~T~~~~ 72 (119)
++|++||++|++|++|. +|-.|-....+.++.....|++ |++|+| | .||++..+ .+. +...+++++| +.+
T Consensus 242 eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a~P~i~gg-~l~ 319 (493)
T PRK13580 242 EIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKGCPLVLGG-PLP 319 (493)
T ss_pred HHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhCCCcccCC-Ccc
Confidence 48999999999999975 4444422211222222247877 889999 5 57777643 222 3334566666 566
Q ss_pred HHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 73 PGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
|..++.+.+ +..+.++ +..++++++.++|++.|++.
T Consensus 320 p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~~ 358 (493)
T PRK13580 320 HVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLKR 358 (493)
T ss_pred HHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 655555554 5555433 36789999999999999875
No 104
>KOG1357|consensus
Probab=99.16 E-value=8.4e-11 Score=91.38 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=81.5
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCC-CCCEE--EEchhhc-cCccccccc-ccc----ccccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEE-SPDIV--TFSKKMQ-LGGYFLKPE-FVP----QQAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~-~pDi~--t~gK~lg-~gG~~~~~~-~~~----~~~~~~~~T~ 69 (119)
++++||.++|++||+|+ | .|++|++ .++++|++. ..||+ ||-|+.| +|||+..++ +.+ ......+.|
T Consensus 300 alkkkykayl~lDEAHSiGA~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~GGyiagsk~lid~lrt~s~~~~yat- 377 (519)
T KOG1357|consen 300 ALKKKYKAYLYLDEAHSIGAMGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYAT- 377 (519)
T ss_pred HhhccccEEEEeeccccccccCCCCcc-eeeccCCCchhheeecceehhhcccccceecCcHHHHhhhccCCCceeecc-
Confidence 47999999999999997 4 6888855 778888872 25666 9999998 788888765 322 222233445
Q ss_pred CCCHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN-------ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~-------~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+|..+...+.+++.|.. ++..+++.++.++||..|+..
T Consensus 378 ~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~ 424 (519)
T KOG1357|consen 378 SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM 424 (519)
T ss_pred cCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence 6788889999999999863 235677899999999999876
No 105
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.10 E-value=5.4e-10 Score=85.44 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=72.3
Q ss_pred ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccc----ccccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVP----QQAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~----~~~~~~~~T~ 69 (119)
++|++||++||+||+|. |+ |..|.+ ..+..++...+|++ +++|+++ .+|++..+ .+.+ ....+.+++
T Consensus 194 ~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~~~~~~~- 271 (393)
T TIGR01822 194 DLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSN- 271 (393)
T ss_pred HHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCccceecC-
Confidence 47999999999999984 43 444443 33445554347888 8999985 25665543 2222 122223332
Q ss_pred CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+|..++++.++++.+++ ++..++++++.+++++.|++.
T Consensus 272 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (393)
T TIGR01822 272 SLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA 312 (393)
T ss_pred CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 4567777788899988764 467788999999999999874
No 106
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.10 E-value=5.5e-10 Score=83.84 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=71.4
Q ss_pred ChhhhhCCEEEEccccccccCCCc--chhhhhcCCC-CCCC--EEEEchhhc-cCcccccc-ccccc---cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK--FWCHEHFDLE-ESPD--IVTFSKKMQ-LGGYFLKP-EFVPQ---QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~~g~~-~~pD--i~t~gK~lg-~gG~~~~~-~~~~~---~~~~~~~T~~ 70 (119)
++|++||+++|+||+|+ +|..+. ......+++. ...| +.+|+|+++ .||++..+ .+.+. ....+..+.+
T Consensus 170 ~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~ 248 (360)
T TIGR00858 170 ALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTA 248 (360)
T ss_pred HHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccCcEEEcCHHHHHHHHHhCccceecCC
Confidence 47999999999999986 444332 1223445654 1123 449999997 46776643 23221 1111222335
Q ss_pred CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|..++++.++++.++. ++..++++++.+++.+.|+++
T Consensus 249 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 288 (360)
T TIGR00858 249 LPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL 288 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 778888888999988765 357788999999999999875
No 107
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.06 E-value=1.1e-09 Score=83.55 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=72.1
Q ss_pred ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccc----ccccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVP----QQAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~----~~~~~~~~T~ 69 (119)
++|++||+++|+||++. |+ ++.|.. ....+++...+|++ +++|+++ -+|++..+ .+.. ......+++
T Consensus 198 ~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~~~~~~~~~- 275 (397)
T PRK06939 198 DLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSN- 275 (397)
T ss_pred HHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHhCccccccC-
Confidence 47999999999999984 53 444442 34455664347888 9999993 35666532 2322 112222222
Q ss_pred CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+|..++++.++++.+++ ++++++++++.+++++.|+++
T Consensus 276 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 316 (397)
T PRK06939 276 SLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA 316 (397)
T ss_pred CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 4567778888888988865 367788899999999999875
No 108
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=98.97 E-value=1.9e-09 Score=85.41 Aligned_cols=104 Identities=14% Similarity=0.154 Sum_probs=70.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCcccccc-c--------------c---c
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKP-E--------------F---V 58 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~-~--------------~---~ 58 (119)
++|++||++|++|++|. +|-.+..+....+. ..|++ |+.|+| | .||++..+ . + .
T Consensus 205 ~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~---~~Div~~t~hK~L~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i 280 (475)
T PLN03226 205 KIADKVGALLMCDMAHI-SGLVAAQEAASPFE---YCDVVTTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKI 280 (475)
T ss_pred HHHHHcCCEEEEEchhh-hCcccCCCCCCCCC---CCeEEEecCcccccCCCceEEEEchhhcccccCCCccHHHHHHHh
Confidence 48999999999999975 44444332111122 37887 778999 4 56766532 1 1 1
Q ss_pred cccccceeeccCCCHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 59 PQQAYRVFNTWMGDPGKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 59 ~~~~~~~~~T~~~~p~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
+......+++ +.+|..+++..++++.+.+++ ..+++.++.++|++.|++.
T Consensus 281 ~~a~~~~~~g-~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 281 NFAVFPGLQG-GPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred ccccCCccCC-CchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 1222223344 567788888889999997643 5788999999999999874
No 109
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=98.92 E-value=2.5e-09 Score=81.54 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=66.3
Q ss_pred ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCccccccc-cc----cccccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKPE-FV----PQQAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~~-~~----~~~~~~~~~T~ 69 (119)
++|++||+++|+||+|. |. |..|.. ....++ +|++ ||+|+| | -+||++.+. +. ...+.+.+
T Consensus 162 ~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~----~divv~s~SKalaG~r~G~v~~~~~li~~l~~~~~~~~~--- 233 (346)
T TIGR03576 162 KQAKSKEAIVLVDDASGARVRRLYGQP-PALDLG----ADLVVTSTDKLMDGPRGGLLAGRKELVDKIKSVGEQFGL--- 233 (346)
T ss_pred HHHHHcCCEEEEECCccccccccCCCC-CHHHcC----CcEEEeccchhccccceEEEEeCHHHHHHHHHhhcCccc---
Confidence 36889999999999975 21 222322 122333 4655 899999 4 478877543 32 22333333
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+|...+++.++|+.+..+...+.++++.+++++.++.+
T Consensus 234 s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~ 273 (346)
T TIGR03576 234 EAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL 273 (346)
T ss_pred CccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC
Confidence 2577788999999987655566777888888888877753
No 110
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.82 E-value=9e-09 Score=78.41 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=64.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~ 72 (119)
+||+.+++++|+||++++|++.|.....+..+.. |+++ +|||++| .| |+++.+ .+.+.... ...++..+
T Consensus 184 ~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~--~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~-~~~~~~~s 260 (368)
T PRK03317 184 AILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEY--PRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRL-VRLPYHLS 260 (368)
T ss_pred HHHHHCCceEEEeCCchhhcccCCcCHHHHHHhC--CCEEEEEechhhhccchhhhhhhhCCHHHHHHHHh-cCCCCCCC
Confidence 4678889999999999988766654444444433 7777 9999997 45 565543 23321111 11356778
Q ss_pred HHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800 73 PGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~ 108 (119)
+++.+++.++|+..+. .+..++++++-+++.+.|++
T Consensus 261 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 297 (368)
T PRK03317 261 AVTQAAARAALRHADELLASVAALRAERDRVVAWLRE 297 (368)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888865432 12223344444455555544
No 111
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=98.80 E-value=1.1e-08 Score=79.81 Aligned_cols=105 Identities=16% Similarity=0.097 Sum_probs=63.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccc-cc-cccccccceeecc---CC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLK-PE-FVPQQAYRVFNTW---MG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~-~~-~~~~~~~~~~~T~---~~ 71 (119)
++|++||++||+|++|. +|..+.+. +.+....+|++ +++|+++ .||+++. +. +........++++ ..
T Consensus 190 ~la~~~g~~livD~Aha-~G~~~~g~---~~~~~~~~Di~~~s~~K~l~g~~GG~v~~~~~~~~~~~~~~~~~~~~~~~~ 265 (416)
T PRK13034 190 EIADEVGALLMVDMAHI-AGLVAAGE---HPNPFPHAHVVTTTTHKTLRGPRGGMILTNDEEIAKKINSAVFPGLQGGPL 265 (416)
T ss_pred HHHHHcCCEEEEeCccc-ccCcccCC---CCCCCCCceEEEEeCcccCCCCCCeEEEECcHHHHHHHHhhcCCcccCCcc
Confidence 47999999999999974 55555431 11111237877 6789993 4676653 22 2221112233221 22
Q ss_pred CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
+|..++++++.++.++. ++++++++++.++|+++|+++
T Consensus 266 ~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~ 305 (416)
T PRK13034 266 MHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER 305 (416)
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444445566655532 345789999999999999875
No 112
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=98.77 E-value=4e-08 Score=73.66 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=70.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcch-hhhhcCC-CCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDL-EESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~-~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~ 70 (119)
++|++||+++|+||+|. +|..+..+ ....... ...+|++ +++|.++ .||++..+ .+.+ ....+. .+..
T Consensus 156 ~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~gG~i~~~~~~~~~~~~~~~~~~-~~~~ 233 (349)
T cd06454 156 DLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFI-FSTS 233 (349)
T ss_pred HHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcccCCEEECCHHHHHHHHHhchhhh-ccCC
Confidence 47999999999999974 33333211 1112221 1236776 7999997 46766543 3322 111222 2336
Q ss_pred CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|..++++.++|+.+.+ ++..+++.++.+++++.|+++
T Consensus 234 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (349)
T cd06454 234 LPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL 273 (349)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 788889999999998875 567788899999999988775
No 113
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.55 E-value=8.5e-08 Score=71.21 Aligned_cols=109 Identities=25% Similarity=0.234 Sum_probs=67.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchh-hhhcCCCCCCCEE--EEchhhc-cC---ccccc-c-cccccc-ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEESPDIV--TFSKKMQ-LG---GYFLK-P-EFVPQQ-AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~-~-~~~~~~-~~~~~~T~~ 70 (119)
++|++||+++|+||++.+++..+.... ....+. ...|++ +++|.++ .| |++.. + .+.+.. ......++.
T Consensus 159 ~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~ 237 (350)
T cd00609 159 ELAKKHGILIISDEAYAELVYDGEPPPALALLDA-YERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSG 237 (350)
T ss_pred HHHHhCCeEEEEecchhhceeCCcccccccCcCc-cCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccC
Confidence 479999999999999987655444321 011111 113444 7999995 22 44443 2 233321 122233556
Q ss_pred CCHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhhh
Q psy4800 71 GDPGKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
.++.+..++.+.++..+ .+...++++++.+++++.|++..
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 279 (350)
T cd00609 238 PSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELG 279 (350)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78888888888887762 23556677888888888887753
No 114
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.51 E-value=3.8e-07 Score=69.82 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=64.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhh---c----cCcccccc-ccccccc--------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM---Q----LGGYFLKP-EFVPQQA-------- 62 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~l---g----~gG~~~~~-~~~~~~~-------- 62 (119)
++|++||+++|+|++|+.....+..+ .+ . +|++ .++|.+ | .+|++..+ .+.+..+
T Consensus 183 ~la~~~g~~livD~~~~~~~~~~~~~---~~--~--~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~ 255 (398)
T cd00613 183 DIAHSAGALVYVDGDNLNLTGLKPPG---EY--G--ADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTK 255 (398)
T ss_pred HHHHhcCCEEEEEeccccccCCCChH---Hc--C--CCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeecccc
Confidence 48999999999999975321111111 12 2 8887 456664 1 13344322 2221100
Q ss_pred ----------------------cceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhh
Q psy4800 63 ----------------------YRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 63 ----------------------~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l~ 110 (119)
....+|++++++.++++.++++.+.++ +..++.+++.++++++|+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 328 (398)
T cd00613 256 DAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVG 328 (398)
T ss_pred ccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 011246778888988888888887654 355788999999999998863
No 115
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=98.50 E-value=5.4e-07 Score=68.91 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=56.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC--ccccc-cc----cccccccceeecc-
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG--GYFLK-PE----FVPQQAYRVFNTW- 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g--G~~~~-~~----~~~~~~~~~~~T~- 69 (119)
++|++||+++|+||+|. +|..+..+. ... +|++ +++|+++ +| ||+.. .. +.+..+++.+++.
T Consensus 170 ~la~~~~~~livDea~~-~g~~~~~~~----~~~--~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~ 242 (370)
T TIGR02539 170 KVCREKGVPLLLNCAYT-VGRMPVSAK----EIG--ADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVE 242 (370)
T ss_pred HHHHHcCCeEEEECccc-cCCcCCCHH----HcC--CCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceee
Confidence 47999999999999975 443332211 112 6765 8999996 34 56543 22 2222222222111
Q ss_pred ----CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhh
Q psy4800 70 ----MGDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 70 ----~~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l~ 110 (119)
...+.++.++.++++.+.+. +...+..++.++|++.|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g 288 (370)
T TIGR02539 243 LLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIG 288 (370)
T ss_pred eecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11123455556666653321 223334455678999998863
No 116
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=98.48 E-value=6.4e-07 Score=70.48 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=66.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cCcccc-cccccc----ccccceeecc--
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LGGYFL-KPEFVP----QQAYRVFNTW-- 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~gG~~~-~~~~~~----~~~~~~~~T~-- 69 (119)
++|+++|+++++|++|+ +|..+.... . ..+. .+|+++ ..|+|+ .||++. .+.+.+ ......+.+|
T Consensus 204 ~i~~~~ga~l~vDaaq~-~G~i~~~~~-~-~~~~-~~D~l~~S~hK~l~GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G 279 (452)
T PTZ00094 204 EICDSVGAYLMADIAHT-SGLVAAGVL-P-SPFP-YADVVTTTTHKSLRGPRSGLIFYRKKVKPDIENKINEAVFPGLQG 279 (452)
T ss_pred HHHHHcCCEEEEeccch-hccccCCCC-C-CCCC-CCcEEEcCCccCCCCCCceEEEEecccchHHHHhhccccCCCCCC
Confidence 47999999999999975 555543211 1 1111 379885 459883 345544 333211 1111122222
Q ss_pred CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
+.++..+++..++++.+.+. +..+++.++.++|.+.|++.
T Consensus 280 ~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~ 322 (452)
T PTZ00094 280 GPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR 322 (452)
T ss_pred CchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677888888999998543 46788999999999999764
No 117
>KOG1358|consensus
Probab=98.40 E-value=3.7e-07 Score=70.43 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=77.9
Q ss_pred ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEEE--Echhhc-cCccccccccc-cc----cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIVT--FSKKMQ-LGGYFLKPEFV-PQ----QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~t--~gK~lg-~gG~~~~~~~~-~~----~~~~~~~T~ 69 (119)
++..||..-+|+||..+ | +|++|++ ..+|+++. ...|+++ +.-+|+ +||+..++.++ .. ...+.+|.
T Consensus 257 ~lk~Kyk~RvildEs~SfG~lg~~GrG-vteH~~v~~~~iDiv~~sm~~alas~GgFc~G~~~i~~hQrLSg~~Y~fSA- 334 (467)
T KOG1358|consen 257 KLKNKYKFRVILDESLSFGVLGKTGRG-VTEHFGVPITDIDIVTASMETALASGGGFCAGKSFIADHQRLSGSGYCFSA- 334 (467)
T ss_pred HHHhhheEEEEEecccccccccccCcc-ccccCCCCccceeeeeecccccccccCceeecceeeEeeeeccccceeeec-
Confidence 36789999999999976 5 4666655 67899987 4568885 555666 78888876543 21 22344555
Q ss_pred CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+|..+.+|..++++++. ++..+.++.....+...|+..
T Consensus 335 slPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~ 375 (467)
T KOG1358|consen 335 SLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSN 375 (467)
T ss_pred cCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcC
Confidence 7899999999999999975 577777777777777777663
No 118
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.35 E-value=2.5e-07 Score=69.11 Aligned_cols=105 Identities=13% Similarity=0.029 Sum_probs=60.0
Q ss_pred ChhhhhCCEEEEcccccc--ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCc-ccc-cccccccc---ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTG--GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGG-YFL-KPEFVPQQ---AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG--~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG-~~~-~~~~~~~~---~~~~~~T~~ 70 (119)
++|++||+++|+||++.- .+-.|.. ....... +|++ +++|.++ .|| ++. .+.+.+.. ...+..++.
T Consensus 153 ~~~~~~~~~livDea~~~~~~~~~~~~--~~~~~~~--~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
T cd06502 153 ALAKENGLPLHLDGARLANAAAALGVA--LKTYKSG--VDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMR 228 (338)
T ss_pred HHHHHcCCeEeechHHHHHHHHhcCCC--HHHHHhc--CCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCCChh
Confidence 478999999999998741 1112221 1112222 6766 8999987 334 333 23333211 111223445
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+++.++++.++|+.-...+..+++.++.+++.+.|+++
T Consensus 229 ~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 267 (338)
T cd06502 229 QSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL 267 (338)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777776653111235567778888999998875
No 119
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=98.34 E-value=1.6e-06 Score=67.02 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=58.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccc-c-ccccc----cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLK-P-EFVPQ----QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~-~-~~~~~----~~~~~~~T~~ 70 (119)
++|++||+++|+||+|. +|..+.+......+ ..|++ +++|+++ -||+++. + .+... ......+| .
T Consensus 187 ~la~~~~~~livD~a~~-~g~~~~g~~~~~~~---~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~-~ 261 (416)
T PRK00011 187 EIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP---HADVVTTTTHKTLRGPRGGLILTNDEELAKKINSAVFPGIQGG-P 261 (416)
T ss_pred HHHHHcCCEEEEECcch-hcccccCccCCCCC---CCcEEEecCCcCCCCCCceEEEeCCHHHHHHHHHHhCccccCC-c
Confidence 47999999999999975 33332211111112 26776 7899884 3666654 2 33321 11112222 1
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+..++...+.++.+++ +++.++++++.+++++.|+++
T Consensus 262 ~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 302 (416)
T PRK00011 262 LMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER 302 (416)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 122233333444444432 356778899999999999875
No 120
>PRK06225 aspartate aminotransferase; Provisional
Probab=98.33 E-value=8.4e-07 Score=67.86 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=56.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---ccccc-cccccccccceeeccCCCHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQQAYRVFNTWMGDPGK 75 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~~~~~~~~T~~~~p~~ 75 (119)
++|++||+++|+||++..|. .+...... ...+...++.+|+|.+| .| |++.. +.+.........++++.|+++
T Consensus 184 ~~a~~~~~~ii~De~y~~~~-~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~~~~~~~~~~ 261 (380)
T PRK06225 184 EIARDNDAFLLHDCTYRDFA-REHTLAAE-YAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDLGTNVIA 261 (380)
T ss_pred HHHHHCCcEEEEehhHHHHh-ccCCchhh-cCCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHhcccCCCHHH
Confidence 46899999999999987652 22211111 11111144669999996 33 45443 233322112223456778888
Q ss_pred HHHHHHHHHHHhhhcHHHHH----HHHHHHHHHHHHh
Q psy4800 76 VLLLKGIIDTIHNENLLDRV----QKTGDILLNVRLG 108 (119)
Q Consensus 76 ~a~a~a~l~~i~~~~~~~~~----~~~g~~l~~~L~~ 108 (119)
.+++.+.|+.. .++.+++ +++-+.+.+.|++
T Consensus 262 ~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~ 296 (380)
T PRK06225 262 QEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAVDE 296 (380)
T ss_pred HHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88777777542 2233333 3444455555554
No 121
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=98.27 E-value=1.8e-06 Score=64.85 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=63.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccc-c-cccc-------ccc---
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLK-P-EFVP-------QQA--- 62 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~-~-~~~~-------~~~--- 62 (119)
++|++||+++|+|++|+ +|.... ....+.. .|+.+++ |.++ .||++.. + .+.+ ...
T Consensus 127 ~l~~~~~i~li~D~a~~-~g~~~~---~~~~~~~--~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T cd00616 127 AIAKRHGLPVIEDAAQA-LGATYK---GRKVGTF--GDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRD 200 (352)
T ss_pred HHHHHcCCeEEEECCCC-CCCeEC---CEEcccC--cceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCC
Confidence 47999999999999986 332211 1122322 6777776 9995 3565543 2 2211 000
Q ss_pred ------cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 63 ------YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 63 ------~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
.....++..+++.++.++..++.+ ++..++.+++.+++++.|+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~ 251 (352)
T cd00616 201 RFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADL 251 (352)
T ss_pred CCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCC
Confidence 011234567888888888777666 346677889999999999874
No 122
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.25 E-value=1.3e-06 Score=64.91 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=62.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc---cCcccc-ccccccc----cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ---LGGYFL-KPEFVPQ----QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg---~gG~~~-~~~~~~~----~~~~~~~T~~ 70 (119)
++|++||+++|+||+|...-..+...-...... ..|++ ++.|.++ .||++. .+..... .....+.|.+
T Consensus 177 ~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~--~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~tts 254 (294)
T cd00615 177 EEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA--GADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQSTS 254 (294)
T ss_pred HHHHhcCCeEEEECcchhhhccCcccCcchhhc--CCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHHCCCC
Confidence 479999999999999864211111100011111 26877 7889985 133332 2221110 1112233436
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+.+.+++..++++++.+ +++.+++.++.++++++|++
T Consensus 255 ps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~~ 294 (294)
T cd00615 255 PSYLILASLDVARAMMALEGKELVEELIELALYARQEINK 294 (294)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 677778888888888754 35777888888888887753
No 123
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.24 E-value=4.3e-06 Score=63.02 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=55.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p 73 (119)
++|++||+++|+||++.++-..... ....+.. ..+|+ +|+|.+| .| |++..+ .+.+... ...+++..++
T Consensus 152 ~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~-~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~-~~~~~~~~s~ 227 (330)
T TIGR01140 152 ARLRARGGWLVVDEAFIDFTPDASL--APQAARF-PGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLR-EALGPWTVNG 227 (330)
T ss_pred HHhHhcCCEEEEECcccccCCccch--hhHhccC-CCEEEEEecchhhcCchhhhhheeCCHHHHHHHH-hcCCCCCchH
Confidence 3688999999999999876322111 1111211 12343 8999996 33 555432 2322111 1122345566
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800 74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN 114 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p 114 (119)
++.+++.+.+ +++++.+++++.-+..++.+.+..++++
T Consensus 228 ~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 265 (330)
T TIGR01140 228 PARAAGRAAL---ADTAWQAATRARLAAERARLAALLARLG 265 (330)
T ss_pred HHHHHHHHHH---hchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6665555544 4444544444444444555544444444
No 124
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.20 E-value=1e-05 Score=62.56 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=60.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcccccccccc-ccccce-------ee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFLKPEFVP-QQAYRV-------FN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~~~~~~~-~~~~~~-------~~ 67 (119)
++|++||+++++|++|+ +|... . ...+.. +|+++++ |.+| .|++++.+.... ..+... +.
T Consensus 166 ~l~~~~g~~livD~a~a-~g~~~--~--~~~~~~--~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~ 238 (402)
T TIGR02006 166 EICRERKVFFHVDAAQS-VGKIP--I--NVNELK--VDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMR 238 (402)
T ss_pred HHHHHcCCEEEEEcchh-cCCcc--c--CccccC--CCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCccCCcc
Confidence 47999999999999985 43321 1 112333 8999999 9775 233334432211 111111 11
Q ss_pred ccCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHhh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~l 109 (119)
....+...+.+..++++.+++. ...++.+++.+++++.|+++
T Consensus 239 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 282 (402)
T TIGR02006 239 SGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI 282 (402)
T ss_pred CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 2234566666667888887642 34566777778888877654
No 125
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.18 E-value=3.7e-06 Score=63.49 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=57.9
Q ss_pred hhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---ccccccc-cccccccceeeccCCC
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKPE-FVPQQAYRVFNTWMGD 72 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~~-~~~~~~~~~~~T~~~~ 72 (119)
+|++|++++|+||++..+ ..+.. +......+...++++ +|+|.+| .| |++.... +.+.... ...++..+
T Consensus 176 ~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~-~~~~~~~~ 253 (363)
T PF00155_consen 176 LAREYNIIIIVDEAYSDL-IFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRR-FQRSGLSS 253 (363)
T ss_dssp HHHHTTSEEEEEETTTTG-BSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHH-HHHHTTSS
T ss_pred hhcccccceeeeeceecc-ccCCCccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhh-cccccccc
Confidence 599999999999998765 33321 111122222224533 8999997 56 6766432 3322111 11222335
Q ss_pred HHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhh
Q psy4800 73 PGKVLLLKGIIDTIHN-----ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~-----~~~~~~~~~~g~~l~~~L~~l 109 (119)
.....++.+.+.--.. ++..++++++-+++.+.|++.
T Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 295 (363)
T PF00155_consen 254 SPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI 295 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh
Confidence 5555555554443321 245556677777777777654
No 126
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=98.17 E-value=5.3e-06 Score=63.45 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=55.2
Q ss_pred hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL 77 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a 77 (119)
+++++|+||+...|+..|...... .. .|+++ +|||.+| .| |+++.+ .+..... ....+++.++++..
T Consensus 186 ~~~~lI~DE~y~~~~~~~~~~~~~--~~--~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~-~~~~~~~~s~~~q~ 260 (369)
T PRK08153 186 ETTLLVLDEAYCETAPAGAAPPID--TD--DPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFD-KVRNHFGMNRIAQA 260 (369)
T ss_pred CCcEEEEeCchhhhcCcccchhhh--hc--CCCEEEEecchHhccCcchheeeeecCHHHHHHHH-HhhcCCCCCHHHHH
Confidence 489999999987665433221111 11 24543 9999997 45 666543 2322100 11134567888888
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800 78 LLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 78 ~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
++.++|+ ++++.+++++..+..++.+.+..
T Consensus 261 ~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L 290 (369)
T PRK08153 261 AALAALK---DQAYLAEVVGKIAAARDRIAAIA 290 (369)
T ss_pred HHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888874 44555555555555555554443
No 127
>PRK07324 transaminase; Validated
Probab=98.17 E-value=5e-06 Score=63.75 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=46.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~~p 73 (119)
++|++||+++|+||++.++...+..... .... ....+-+|||.+| .| |+++.+ .+.+. ......+++..++
T Consensus 180 ~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~~~ 257 (373)
T PRK07324 180 EIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGV 257 (373)
T ss_pred HHHHHCCCEEEEEccccccccCCCCCCh--hhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEecCCh
Confidence 4789999999999998876332321111 1111 0022338999986 44 665543 23321 1222344556677
Q ss_pred HHHHHHHHHHH
Q psy4800 74 GKVLLLKGIID 84 (119)
Q Consensus 74 ~~~a~a~a~l~ 84 (119)
++..++..+|+
T Consensus 258 ~~q~~a~~~l~ 268 (373)
T PRK07324 258 FDDMLASLALE 268 (373)
T ss_pred HHHHHHHHHHc
Confidence 77777766664
No 128
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.17 E-value=8.3e-06 Score=62.81 Aligned_cols=103 Identities=11% Similarity=0.035 Sum_probs=59.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc---Cccccc-ccccc----ccccce------e
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL---GGYFLK-PEFVP----QQAYRV------F 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~---gG~~~~-~~~~~----~~~~~~------~ 66 (119)
++|++||+++|+|++|. +|..... ...++++ ..+.++.|++++ .|++.. +.+.+ ..+.+. +
T Consensus 182 ~la~~~g~~livD~a~~-~g~~~~~--~~~~g~D--~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~ 256 (387)
T PRK09331 182 KVAHEYGIPFLLNGAYT-VGRMPVD--GKKLGAD--FIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELL 256 (387)
T ss_pred HHHHHcCCEEEEECCcc-cCCcCCC--HHHcCCC--EEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeee
Confidence 47999999999999975 4433322 1234433 344488999852 255543 22221 111111 1
Q ss_pred eccCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
++ +.++....+.+++++.+.+. +..++..++.+++++.|+++
T Consensus 257 ~~-~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l 299 (387)
T PRK09331 257 GC-TLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKI 299 (387)
T ss_pred ce-ecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 21 23444555666777766542 44566677888999999877
No 129
>PRK06108 aspartate aminotransferase; Provisional
Probab=98.16 E-value=3.5e-06 Score=64.19 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=58.6
Q ss_pred ChhhhhCCEEEEccccccccCC-CcchhhhhcCCCC-CCC-E--EEEchhhc-cC---cccccc-ccccc-cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPC-GKFWCHEHFDLEE-SPD-I--VTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~-G~~~~~~~~g~~~-~pD-i--~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~ 69 (119)
++|++||+++|+||++..+-.. +... .....+.. .+. + .+|+|.+| .| |++..+ .+.+. .....++++
T Consensus 185 ~~~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~~ 263 (382)
T PRK06108 185 AHCRRHGLWIVADEVYERLYYAPGGRA-PSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTS 263 (382)
T ss_pred HHHHHCCcEEEEehhhhhhccCCCCCC-CCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhccc
Confidence 4789999999999998865221 1110 00112211 122 2 28999886 34 555543 23221 111223455
Q ss_pred CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+++...++.++|+.-.+ ++.+++++++-+++.+.|+++
T Consensus 264 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 305 (382)
T PRK06108 264 CVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRAL 305 (382)
T ss_pred CCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6678877777777753211 234555666666666666554
No 130
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=98.10 E-value=1.3e-05 Score=61.92 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=60.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc---cCcccccc-ccccccc---cce------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ---LGGYFLKP-EFVPQQA---YRV------ 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg---~gG~~~~~-~~~~~~~---~~~------ 65 (119)
++|++||+++++|++|+ +|..- .-.+..+ +|++ +.-|.|+ ++|+++.. .+....+ ..+
T Consensus 195 ~~~~~~g~~~~vD~aq~-~G~~~--id~~~~g----vD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~ 267 (406)
T TIGR01814 195 RAAHAKGALVGFDLAHA-VGNVP--LDLHDWG----VDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPT 267 (406)
T ss_pred HHHHHcCCEEEEEcccc-cCCcc--cccccCC----CCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCcc
Confidence 47999999999999986 44331 2223344 5555 7789873 23333322 1111000 000
Q ss_pred --------------eeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 66 --------------FNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 --------------~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+...|..++++..++|+++++. ...++.+.+.+++++.|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~ 328 (406)
T TIGR01814 268 RFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKAR 328 (406)
T ss_pred ccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 001123556788888899998653 46677888888888888764
No 131
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.10 E-value=1.7e-05 Score=59.95 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=62.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCccc-ccccccc---ccccce-------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYF-LKPEFVP---QQAYRV------- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~-~~~~~~~---~~~~~~------- 65 (119)
++|++||+++|+|++|. +|..- .-.+ .. .+|+++++ |.+| +.|+. .++.... ..+...
T Consensus 162 ~l~~~~~~~~ivD~a~~-~g~~~--~~~~--~~--~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (353)
T TIGR03235 162 EVLEAHEAFFHVDAAQV-VGKIT--VDLS--AD--RIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERG 234 (353)
T ss_pred HHHHHcCCEEEEEchhh-cCCcc--cccc--cc--CCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCCCcCc
Confidence 47999999999999975 44331 1111 11 28999877 9875 22443 3433211 111111
Q ss_pred eeccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 66 FNTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ~~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.....|+....+..++++.+.+ ++..++.+++.+++++.|++.
T Consensus 235 ~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (353)
T TIGR03235 235 LRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL 280 (353)
T ss_pred cccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Confidence 11224566777778888888753 356678888889999888653
No 132
>PRK07682 hypothetical protein; Validated
Probab=98.09 E-value=6.8e-06 Score=62.76 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=60.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcch-hhhhcCCC-CCCCEEEEchhhc-cC---cccccc-cccccc-ccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~~ 72 (119)
++|++|++++|+||++..+...+..- .....+.. ...-+.+|||.++ .| |++..+ .+.+.. .....+++..+
T Consensus 181 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~~ 260 (378)
T PRK07682 181 VIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAP 260 (378)
T ss_pred HHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCCC
Confidence 47999999999999988664333211 11111221 0012348999986 45 666543 233221 11113344566
Q ss_pred HHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 73 PGKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 73 p~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l 109 (119)
+++..++.+.|+--+ -.+.+++++++-+++.+.|+++
T Consensus 261 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 299 (378)
T PRK07682 261 TMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI 299 (378)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 777776766664311 1234455667777777777765
No 133
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.07 E-value=7.2e-06 Score=62.99 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=55.3
Q ss_pred ChhhhhCCEEEEcccc-ccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccc-c-ccccc----cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQ-TGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLK-P-EFVPQ----QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~-tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~-~-~~~~~----~~~~~~~T~ 69 (119)
++|++||+++|+||+| .|+--.|.. ..... . +|++ +++|+++ .||+++. + .+.+. ......++
T Consensus 183 ~l~~~~~~~li~D~a~~~g~~~~g~~--~~~~~-~--~dv~~~s~sK~l~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~- 256 (402)
T cd00378 183 EIADEVGAYLLVDMAHVAGLVAGGVF--PNPLP-G--ADVVTTTTHKTLRGPRGGLILTRKGELAKKINSAVFPGLQGG- 256 (402)
T ss_pred HHHHhcCCEEEEEccchhhhhhcccC--CCccc-C--CcEEEeccccCCCCCCceEEEeccHHHHHHHHHHhCccccCC-
Confidence 4799999999999997 343111211 11111 2 6766 7889883 3555543 3 33321 11122222
Q ss_pred CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l 109 (119)
.++...+++..++..+.+ ++..++++++.+++++.|+++
T Consensus 257 -~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 298 (402)
T cd00378 257 -PHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER 298 (402)
T ss_pred -chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122333333334443322 356677888888999988775
No 134
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=98.03 E-value=1.7e-05 Score=59.51 Aligned_cols=102 Identities=16% Similarity=0.267 Sum_probs=61.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cC-ccccc-cccccc----cccce-----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LG-GYFLK-PEFVPQ----QAYRV----- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~g-G~~~~-~~~~~~----~~~~~----- 65 (119)
++|++|++++|+|++++ +|.. .+....++ +|++ +++|+++ .| |++.. +.+.+. .....
T Consensus 149 ~l~~~~~~~livD~~~s-~g~~--~~~~~~~~----~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (355)
T TIGR03301 149 KVARSHGAVLIVDAMSS-FGAI--PIDIEELD----VDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYD 221 (355)
T ss_pred HHHHHcCCEEEEEeccc-cCCc--ccchhhcC----ccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHH
Confidence 47999999999999865 5432 22222333 5654 8999873 12 44432 222111 01100
Q ss_pred ---------eeccCCCHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHhh
Q psy4800 66 ---------FNTWMGDPGKVLLLKGIIDTIHNEN----LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ---------~~T~~~~p~~~a~a~a~l~~i~~~~----~~~~~~~~g~~l~~~L~~l 109 (119)
...|..++....++.++++.+.+++ ..++.+++.+++++.|+++
T Consensus 222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~ 278 (355)
T TIGR03301 222 QWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL 278 (355)
T ss_pred HHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc
Confidence 1133467777788888898875432 4556778888888888765
No 135
>PRK02948 cysteine desulfurase; Provisional
Probab=98.03 E-value=2.3e-05 Score=59.81 Aligned_cols=102 Identities=16% Similarity=-0.000 Sum_probs=63.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccc-ccccc--ccc----ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFL-KPEFV--PQQ----AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~-~~~~~--~~~----~~~~~~T~ 69 (119)
++|++||+++++|++|+ +|....- .+.++ .|++ ++.|.+| +-|+.. .+.+. ... ...-+..+
T Consensus 162 ~l~~~~~~~vivD~~~~-~g~~~~~--~~~~~----~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (381)
T PRK02948 162 ALLKKYNVLFHSDCVQT-FGKLPID--VFEMG----IDSLSVSAHKIYGPKGVGAVYINPQVRWKPVFPGTTHEKGFRPG 234 (381)
T ss_pred HHHHHcCCEEEEEChhh-ccccccC--cccCC----CCEEEecHHhcCCCCcEEEEEEcCCCCCCCcccCCCCCCCcCCC
Confidence 47999999999999864 6543221 22222 6776 7889876 224433 33321 100 00111223
Q ss_pred CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
..|+.+.+++.++++.+.+ ++..++++++.+++++.|+++
T Consensus 235 t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 276 (381)
T PRK02948 235 TVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL 276 (381)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888888887643 356678889999999998875
No 136
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=97.96 E-value=1.8e-05 Score=59.86 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=51.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchh-hhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG 74 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~ 74 (119)
++|+++|+++|+||++.+|. .+..-. ...++-. .-+-+|+|.+| .| |++..+ .+..... ....++..+++
T Consensus 182 ~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~v--i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (361)
T PRK00950 182 KILESTDALVFVDEAYVEFA-EYDYTPLALEYDNL--IIGRTFSKVFGLAGLRIGYGFVPEWLIDYYM-RAKTPFSLTRL 257 (361)
T ss_pred HHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCE--EEEEeehHhhcCchhhcchhcCCHHHHHHHH-HhcCCCCCCHH
Confidence 47899999999999998763 111111 1111100 22338999997 44 666543 2322110 01123345677
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy4800 75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL 107 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~ 107 (119)
+.+++.++++ +.++.++..+..+..++.|.
T Consensus 258 ~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~ 287 (361)
T PRK00950 258 SQAAAIAALS---DKEYIEKSIEHGIKSREYLY 287 (361)
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 6666666553 34444444444444444443
No 137
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=97.95 E-value=5.7e-05 Score=57.33 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=57.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCccccc-cccccccccc-----------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLK-PEFVPQQAYR----------- 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~-~~~~~~~~~~----------- 64 (119)
++|++||+++++|++++ +|... .... .+. +|+++++ |.++ +.|++.. +.+.+.....
T Consensus 163 ~~~~~~~~~li~D~a~~-~~~~~--~~~~--~~~--~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 235 (373)
T cd06453 163 EIAHEAGVPVLVDGAQS-AGHMP--VDVQ--DLG--CDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVS 235 (373)
T ss_pred HHHHHcCCEEEEEhhhh-cCcee--eecc--ccC--CCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccccc
Confidence 47999999999999975 33321 1111 223 8999888 9986 2355432 2221110000
Q ss_pred -----------eeeccCCCHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 65 -----------VFNTWMGDPGKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
-+.+...|..+..+..++++.+.+++ ..++.+++.+++++.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~ 294 (373)
T cd06453 236 FEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEI 294 (373)
T ss_pred ccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 01111234445556666788877543 4555667777777777664
No 138
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=97.92 E-value=6.3e-05 Score=57.81 Aligned_cols=102 Identities=16% Similarity=0.058 Sum_probs=58.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccc-ccccccccccc-----------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFL-KPEFVPQQAYR----------- 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~-~~~~~~~~~~~----------- 64 (119)
++|++||+++++|++|. +|.. .. .. .... +|+++++ |.+| +-|++. .+.+.+..+..
T Consensus 181 ~~~~~~~~~~ivD~a~~-~~~~-~~-~~--~~~~--~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
T TIGR03392 181 TLAHQYGAVVVVDGAQG-VVHG-PP-DV--QALD--IDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVS 253 (398)
T ss_pred HHHHHcCCEEEEEhhhh-cCCC-CC-Ch--hhcC--CCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeecc
Confidence 47999999999999985 3322 11 11 1223 8999988 9776 224443 22221111100
Q ss_pred -----------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 65 -----------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
-+.+-..|..+..+..++++.+++. +..++.+++.+++++.|+++
T Consensus 254 ~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l 312 (398)
T TIGR03392 254 FDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQL 312 (398)
T ss_pred ccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 0011124455777888888888654 34456666777777777654
No 139
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=97.89 E-value=3.9e-05 Score=58.10 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=57.7
Q ss_pred ChhhhhCCEEEEcccccccc----CCCcchhhhhcCCCCCCCEEEE--chhh----ccCccccccc-cccc---cccc--
Q psy4800 1 MYEKYHGSALLIDEVQTGGG----PCGKFWCHEHFDLEESPDIVTF--SKKM----QLGGYFLKPE-FVPQ---QAYR-- 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~G----r~G~~~~~~~~g~~~~pDi~t~--gK~l----g~gG~~~~~~-~~~~---~~~~-- 64 (119)
++|++||+++++||+|+++. +.+..+..... ..|.+++ -|.+ +.|+++..+. +.+. ..++
T Consensus 175 ~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~----~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~ 250 (371)
T PRK13520 175 KIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP----GVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLT 250 (371)
T ss_pred HHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC----CCceEEECCccccCccCCceEEEEcCHHHHHhhcccCcccc
Confidence 47999999999999997542 11111111111 2566543 2432 1233443322 2211 1111
Q ss_pred ------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 65 ------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 65 ------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
+..|. ++..++++.++|+.+.++ +..++..++.++|++.|+++
T Consensus 251 ~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 302 (371)
T PRK13520 251 SKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER 302 (371)
T ss_pred CCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11232 334577788889887654 36677888999999988875
No 140
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=97.89 E-value=9.5e-06 Score=62.22 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=60.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccc-cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQA-YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~-~~~~~T~~ 70 (119)
++|++||+++|+||++. .+... ...... +|++ +++|.+++ +|+++. + .+.+... ........
T Consensus 149 ~la~~~g~~livD~t~~-~~~~~-----~~~~~g--~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~ 220 (369)
T cd00614 149 ELAHEHGALLVVDNTFA-TPYLQ-----RPLELG--ADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTI 220 (369)
T ss_pred HHHHHcCCEEEEECCCc-chhcC-----ChhhhC--CcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCC
Confidence 47999999999999964 22111 112222 7887 89999952 455554 2 3322111 11112235
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|..+.+++..|+.+. ...++..++.+++.+.|++.
T Consensus 221 ~~p~~a~~~l~~l~tl~--~r~~~~~~na~~la~~L~~~ 257 (369)
T cd00614 221 LSPFDAWLLLRGLKTLP--LRMERHSENALKVAEFLEKH 257 (369)
T ss_pred CCHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHHHHHcC
Confidence 77888877766665442 35677788888888888764
No 141
>PRK06460 hypothetical protein; Provisional
Probab=97.88 E-value=2.2e-05 Score=60.58 Aligned_cols=98 Identities=21% Similarity=0.163 Sum_probs=56.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc-ccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~-~~~~~~T~~~ 71 (119)
++|++||+++|+||++... .... ..... .|++ +++|.+++ +|++..+ .+.+.. ......+...
T Consensus 154 ~la~~~g~~vivDea~~~~-~~~~-----~l~~~--~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~ 225 (376)
T PRK06460 154 KVCKENGSILIVDATFSTP-INQK-----PLELG--ADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSL 225 (376)
T ss_pred HHHHHcCCEEEEECCcCcc-ccCC-----hhhcC--CCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCC
Confidence 4799999999999997521 1111 11112 5776 89999952 4666543 232211 1111112245
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
+|..+..++..++.++ ...+++.++.+++.+.|++
T Consensus 226 ~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L~~ 260 (376)
T PRK06460 226 DPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFLEG 260 (376)
T ss_pred CHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHc
Confidence 6766655556666554 3456677777777777775
No 142
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=97.86 E-value=0.00011 Score=55.86 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=60.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc----cCcccccccc--ccccc------cc--
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ----LGGYFLKPEF--VPQQA------YR-- 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~--~~~~~------~~-- 64 (119)
++|++||+++|+|++|+ +|.... ..+.. .+|+++++ |.++ .|++++++.. ..... ..
T Consensus 161 ~l~~~~~~~livD~a~~-~g~~~~--~~~~~----~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~ 233 (376)
T TIGR01977 161 ELAQENGIFFILDAAQT-AGVIPI--DMTEL----AIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALI 233 (376)
T ss_pred HHHHHcCCEEEEEhhhc-cCccCC--Cchhc----CCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccc
Confidence 47999999999999974 544321 11222 27887555 9873 2234443321 11000 00
Q ss_pred --------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 65 --------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 65 --------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
-+.....+...+.+..++++.+.+. ...++.+++.+++++.|+++
T Consensus 234 ~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~ 289 (376)
T TIGR01977 234 DQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREI 289 (376)
T ss_pred cccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 0111134566677777889988764 45677888888888888754
No 143
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=97.86 E-value=2.8e-05 Score=58.55 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=56.8
Q ss_pred hhhhh--CCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCC
Q psy4800 2 YEKYH--GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMG 71 (119)
Q Consensus 2 l~~~~--~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~ 71 (119)
+|+.+ ++++|+||++..+...+... ...... ++++ +++|.+| .| |++..+ .+.+.... ..+++..
T Consensus 167 l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~--~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~-~~~~~~~ 241 (346)
T TIGR01141 167 VLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEY--PNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNK-VRAPFNL 241 (346)
T ss_pred HHHhCCCCcEEEEECchhhhcCCccHH--HHHhhC--CCEEEEehhhHhhhchhhhceeeecCHHHHHHHHh-ccCCCCC
Confidence 45555 99999999988664322211 112222 4544 7899996 33 554432 23221111 1234566
Q ss_pred CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
++++..++.+.++... -.+.+++++++-+++++.|+++
T Consensus 242 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 280 (346)
T TIGR01141 242 SRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL 280 (346)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888887777665432 1234455666666677776654
No 144
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=97.84 E-value=0.00014 Score=55.46 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=56.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc--Cccc-cccccccccccce-------eec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL--GGYF-LKPEFVPQQAYRV-------FNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~--gG~~-~~~~~~~~~~~~~-------~~T 68 (119)
++|++||+++++|++|+ +|.. .. ...... +|+++++ |-+|. -|+. +..... ..+... ...
T Consensus 160 ~l~~~~g~~vivD~~~~-~g~~--~~--~~~~~~--~D~~~~s~~K~~gp~G~g~l~v~~~~~-~~p~~~g~~~~~~~~~ 231 (379)
T TIGR03402 160 EIAKERGALFHTDAVQA-VGKI--PI--DLKEMN--IDMLSLSGHKLHGPKGVGALYIRKGTR-FRPLLRGGHQERGRRA 231 (379)
T ss_pred HHHHHcCCEEEEECccc-cccc--cc--CcccCC--CCEEEEcHHHcCCCCceEEEEECCCCC-CCCcccCCccCCCcCC
Confidence 47999999999999985 4322 11 111233 8999999 94431 1222 222221 011110 112
Q ss_pred cCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~ 108 (119)
...|..+..+..++++++.+. +..++.+++.+++++.|++
T Consensus 232 gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 273 (379)
T TIGR03402 232 GTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA 273 (379)
T ss_pred CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 234566677777888887542 3345666777777777764
No 145
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=97.83 E-value=9.6e-05 Score=57.06 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=60.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccc-cccccccccc------------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFL-KPEFVPQQAY------------ 63 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~-~~~~~~~~~~------------ 63 (119)
++|++||+++++|++|. +|..- .-.+ ... +|+++++ |.+| +-|+.. .+.+.+..++
T Consensus 188 ~~~~~~~~~vivD~a~~-~g~~~--~~~~--~~~--~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~ 260 (406)
T PRK09295 188 ALAHQHGAKVLVDGAQA-VMHHP--VDVQ--ALD--CDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVS 260 (406)
T ss_pred HHHHHcCCEEEEEcccc-cCccc--cCch--hcC--CCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeee
Confidence 47999999999999984 44321 1111 122 7998766 9665 223332 2222110000
Q ss_pred -----------ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 64 -----------RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 64 -----------~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
.-+.+-..|..+..+..++++.+.+. ...++.+++.+++++.|+++
T Consensus 261 ~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~ 320 (406)
T PRK09295 261 LTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESV 320 (406)
T ss_pred cCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 00112135677888889999998763 45567777888888877654
No 146
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.83 E-value=9.3e-05 Score=56.70 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=56.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccc-cccccc----ccccceee-----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFL-KPEFVP----QQAYRVFN----- 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~-~~~~~~----~~~~~~~~----- 67 (119)
++|++||+++|+||+|. .|. +.. -...++ +|++ ++.|.+| ..|+.. .+.+.+ ....+.++
T Consensus 180 ~~~~~~~~~~ivD~a~~-~~~-~~~-~~~~~~----~d~~~~s~~K~~g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~ 252 (397)
T TIGR01976 180 ELVHAAGALVVVDAVHY-APH-GLI-DVQATG----ADFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLTFSYDTGPER 252 (397)
T ss_pred HHHHHcCCEEEEehhhh-ccc-cCC-CHHHcC----CCEEEEechhhcCCceEEEEEcHHHHhhCCCccccCccCCCcch
Confidence 47999999999999985 321 111 112222 7876 7889986 345544 322221 11111111
Q ss_pred --ccCCCHHHHHHHHHHHHHHhhhc-----------------HHHHHHHHHHHHHHHHHhh
Q psy4800 68 --TWMGDPGKVLLLKGIIDTIHNEN-----------------LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 68 --T~~~~p~~~a~a~a~l~~i~~~~-----------------~~~~~~~~g~~l~~~L~~l 109 (119)
+-..|....++..++++.+.+.+ ..++..++.+++++.|+++
T Consensus 253 ~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 313 (397)
T TIGR01976 253 FELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDL 313 (397)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11234556666777888775432 2344556677777777654
No 147
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=97.82 E-value=4.2e-05 Score=57.66 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=56.8
Q ss_pred hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p 73 (119)
+|+++++++|.||+...+-..... . .+...+.++ +|||++| .| ||++.+ .+.+.... ...++..++
T Consensus 152 ~~~~~~~~iI~DE~y~~~~~~~s~---~--~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~-~~~~~~~~~ 225 (330)
T PRK05664 152 RLAARGGWLVVDEAFMDNTPQHSL---A--ACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAE-LLGPWTVSG 225 (330)
T ss_pred HHHhcCCEEEEECCcccCCCcccc---c--ccccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHH-hcCCCCCCH
Confidence 578999999999998655211111 1 111113433 9999997 56 777653 23321111 112334566
Q ss_pred HHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 74 GKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 74 ~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
++..++.++|+-.. .+..+++++++-+++.+.|++.
T Consensus 226 ~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 226 PTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH 262 (330)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 66666666665322 1234555666666777777664
No 148
>PRK05764 aspartate aminotransferase; Provisional
Probab=97.79 E-value=4.2e-05 Score=58.58 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=56.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhc--CCCCCCCEE--EEchhhc-cC---cccccc-ccccccccc-eeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHF--DLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQAYR-VFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~--g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~~~~-~~~T~ 69 (119)
++|++||+++|+||++..+.-.|.. ...... +.. ..+++ +|+|.++ .| |++..+ .+....... ...+.
T Consensus 191 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~ 269 (393)
T PRK05764 191 DVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELR-DRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHSTS 269 (393)
T ss_pred HHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCc-CCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhccc
Confidence 4689999999999998654211221 111111 111 12233 7999986 44 555432 232211111 12233
Q ss_pred CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
..++++..++.+.|+...+ .+++++.+++.+++++.|+++
T Consensus 270 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (393)
T PRK05764 270 NPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI 311 (393)
T ss_pred CCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5677777777777652111 134445556666666766654
No 149
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=97.79 E-value=9.7e-05 Score=56.08 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=61.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cC-ccccc-cccccc----cccce-----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LG-GYFLK-PEFVPQ----QAYRV----- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~g-G~~~~-~~~~~~----~~~~~----- 65 (119)
++|++||+++|+|++|+ +|... .-...+ . +|++ ++.|+|+ .| |++.. ....+. .....
T Consensus 153 ~l~~~~g~~livD~~~~-~g~~~--~~~~~~--~--~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~ 225 (363)
T TIGR02326 153 KLAHRHGKVTIVDAMSS-FGGIP--IDIAEL--H--IDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYD 225 (363)
T ss_pred HHHHHcCCEEEEEcccc-ccCcc--cchhhc--C--ccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHH
Confidence 47999999999999975 55332 222222 2 7776 7889883 23 55432 222110 00000
Q ss_pred ----------eeccCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800 66 ----------FNTWMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ----------~~T~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l 109 (119)
...|..++....+..++++.+.++ +..++++++.+++++.|+++
T Consensus 226 ~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~ 283 (363)
T TIGR02326 226 QWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL 283 (363)
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 012345667777778888877543 35567888888898888766
No 150
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=97.75 E-value=3.1e-05 Score=59.71 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=55.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-cccc-eeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-QAYR-VFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~~~~-~~~T~~ 70 (119)
++|++||+++|+||++... ..... .... +|++ +++|.+++ ||+++.+ .+.+. .... ..++ .
T Consensus 163 ~la~~~gi~livD~a~~~~-~~~~p-----l~~g--~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~-~ 233 (380)
T TIGR01325 163 ELAHAIGALLVVDNVFATP-VLQQP-----LKLG--ADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGP-A 233 (380)
T ss_pred HHHHHcCCEEEEECCCccc-ccCCc-----hhhC--CCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCC-C
Confidence 4799999999999997521 11111 1222 7888 58999853 3554432 22221 1111 1122 3
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+..++..++.+.. ..++..++.+.+.+.|++
T Consensus 234 ~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L~~ 269 (380)
T TIGR01325 234 MSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWLQA 269 (380)
T ss_pred CCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHc
Confidence 567777777777766653 445566666677666654
No 151
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=97.74 E-value=9.4e-05 Score=56.17 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=49.7
Q ss_pred hCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHH
Q psy4800 6 HGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKV 76 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~ 76 (119)
+++++|+||++..+...+. .......+.. ++++ +|+|.+| .| |+...+ .+.+.... ...++..++++.
T Consensus 185 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~-~~~~~~~~~~~~ 261 (367)
T PRK02731 185 PDVLVVLDEAYAEYVRRKDYEDGLELVAKF--PNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNR-VRQPFNVNSLAL 261 (367)
T ss_pred CCcEEEEECcHHHhccCcCcccHHHHHhhc--CCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHH-ccCCCCCCHHHH
Confidence 4999999999875433221 1122223322 4555 8999986 44 565543 23221110 112345567777
Q ss_pred HHHHHHHHHHhhhcHHHHH----HHHHHHHHHHHHh
Q psy4800 77 LLLKGIIDTIHNENLLDRV----QKTGDILLNVRLG 108 (119)
Q Consensus 77 a~a~a~l~~i~~~~~~~~~----~~~g~~l~~~L~~ 108 (119)
.++.+.|+ ++++.+++ +++-+++++.|++
T Consensus 262 ~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~ 294 (367)
T PRK02731 262 AAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAE 294 (367)
T ss_pred HHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654 33333333 4444445555544
No 152
>PRK07777 aminotransferase; Validated
Probab=97.73 E-value=6.8e-05 Score=57.51 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=53.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~ 70 (119)
++|++|++++|+||++..+--.+.. ...+..+.. ..+++ +|+|.+| .| |++..+ .+.+. .......++.
T Consensus 186 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~ 264 (387)
T PRK07777 186 ELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMR-ERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTYV 264 (387)
T ss_pred HHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCc-CcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccC
Confidence 4789999999999998765211211 111111111 12333 8999996 34 555432 23221 1111222333
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+++...++...++.-++ +..++.++++.+++.+.|++.
T Consensus 265 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK07777 265 GGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA 305 (387)
T ss_pred CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333333333332111 234556777778888888764
No 153
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=97.73 E-value=9.7e-05 Score=56.00 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=59.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC---CCCCEEEEc--hhh----ccCccccc-cccccc---ccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE---ESPDIVTFS--KKM----QLGGYFLK-PEFVPQ---QAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~---~~pDi~t~g--K~l----g~gG~~~~-~~~~~~---~~~~~~ 66 (119)
++|++||+++|+||+|.++ ..+.. +.....+++ ...|.++++ |.+ +.|+++.. ..+.+. ..+++.
T Consensus 177 ~l~~~~~~~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~ 255 (373)
T TIGR03812 177 KIALENGIYLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLT 255 (373)
T ss_pred HHHHHcCCeEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCcccC
Confidence 4799999999999998643 11100 000111111 024665542 632 13344432 222211 112211
Q ss_pred e------ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 67 N------TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 67 ~------T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
. +...++..++++.++|+.+.++ +..+++.++.++|++.|+++
T Consensus 256 ~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 307 (373)
T TIGR03812 256 VKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI 307 (373)
T ss_pred CCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 1134556788888999988654 46678889999999999876
No 154
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=97.71 E-value=0.0003 Score=54.15 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=57.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccc-cccccccccc------------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFL-KPEFVPQQAY------------ 63 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~-~~~~~~~~~~------------ 63 (119)
++|++||+++|+|++|. +|..- ...+ .+. +|+++++ |.+| +-|+.. .+.+.+....
T Consensus 184 ~l~~~~g~~~ivD~a~~-~g~~~--~~~~--~~~--~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (401)
T PRK10874 184 TLAHQAGMVVMVDGAQG-AVHFP--ADVQ--ALD--IDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVS 256 (401)
T ss_pred HHHHHcCCEEEEECCcc-ccccc--CCch--hcC--CCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeec
Confidence 47999999999999975 33221 1111 223 8988766 9776 224433 2222211000
Q ss_pred ----------ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 64 ----------RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 64 ----------~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
.-+..-..|..+..+..++++.+.+. +..++.+++.+++++.|+++
T Consensus 257 ~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~ 315 (401)
T PRK10874 257 FDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKL 315 (401)
T ss_pred cCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 00111123455777777888887654 34556667777777777654
No 155
>PRK10534 L-threonine aldolase; Provisional
Probab=97.70 E-value=4.7e-05 Score=57.08 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=52.1
Q ss_pred ChhhhhCCEEEEccccccccCC---CcchhhhhcCCCCCCC--EEEEchhhc--cCccccc-cccccccccceeec---c
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPC---GKFWCHEHFDLEESPD--IVTFSKKMQ--LGGYFLK-PEFVPQQAYRVFNT---W 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~---G~~~~~~~~g~~~~pD--i~t~gK~lg--~gG~~~~-~~~~~~~~~~~~~T---~ 69 (119)
++|++|++++++||++. |+.. +... ..+...+| +++|+|+.+ .||++.. +.+.+........+ +
T Consensus 154 ~~~~~~~~~lvvDEA~~-~~~~~~~~~~~----~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~~ 228 (333)
T PRK10534 154 EFTRERNLALHVDGARI-FNAVVAYGCEL----KEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRARRWRKMTGGGM 228 (333)
T ss_pred HHHHHcCCeEEeeHHHH-HHHHHHcCCCH----HHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHHHHHHHHHHhCCch
Confidence 36899999999999865 4321 2111 11111234 448999886 3545543 33332211111111 1
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+.++.+++.++|+.. .+..++.++.-+++.+.|+++
T Consensus 229 ~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~ 266 (333)
T PRK10534 229 RQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA 266 (333)
T ss_pred hhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC
Confidence 22334555566666532 223333444456788888765
No 156
>PRK07550 hypothetical protein; Provisional
Probab=97.69 E-value=8.1e-05 Score=57.08 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=56.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcc---hhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF---WCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~---~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~ 70 (119)
++|++||+++|+||++..| +.+.. ......+.. ....+.+|+|.+| .| |+++.. .+... .......+.+
T Consensus 190 ~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~ 268 (386)
T PRK07550 190 DLARRHGIALILDETYRDF-DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAIC 268 (386)
T ss_pred HHHHHcCeEEEEeccchhh-ccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccC
Confidence 4799999999999998765 22211 011111111 0122449999996 33 565542 23221 1111122334
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
.++++..++...++.+++ ++.+++++++.+++.+.|++.
T Consensus 269 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (386)
T PRK07550 269 APRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL 309 (386)
T ss_pred CCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566666666666654322 233455666666677777653
No 157
>PLN00175 aminotransferase family protein; Provisional
Probab=97.67 E-value=9.9e-05 Score=57.44 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=57.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-ccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~ 71 (119)
++|++|++++|.||++..+-..+.. ......+.. ...|+ +|||.++ .| |+++.+ .+.... ......+++.
T Consensus 214 ~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~-~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~ 292 (413)
T PLN00175 214 SLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMY-ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 292 (413)
T ss_pred HHHHHcCcEEEEecccCccccCCcccChhhCCCCc-CcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhccCCC
Confidence 4789999999999998654211221 111111221 11222 8999996 45 676643 233211 1111234455
Q ss_pred CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
+++.-.++.+.|+--+. ++.+++++++-+.+.+.|++.
T Consensus 293 s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (413)
T PLN00175 293 ATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV 332 (413)
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 66666666666642211 234455666666777777654
No 158
>PRK09082 methionine aminotransferase; Validated
Probab=97.64 E-value=9.3e-05 Score=56.84 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=53.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~ 70 (119)
++|++|++++|+||++..+--.+.. ......+.. .-.++ +|||.+| .| |+++.+ .+... ........+.
T Consensus 190 ~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~ 268 (386)
T PRK09082 190 QLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELR-ERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNTFT 268 (386)
T ss_pred HHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCcc-CcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhcCC
Confidence 4799999999999997543111211 111112221 11222 8999996 45 666643 23221 1111123334
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
.++++..++.+.++...+ .++++.++++-+++.+.|++.
T Consensus 269 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 309 (386)
T PRK09082 269 VNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS 309 (386)
T ss_pred CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556655554444431111 123344566667777777653
No 159
>PLN02721 threonine aldolase
Probab=97.64 E-value=9.2e-05 Score=55.59 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=49.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC--EEEEchhhc--cCcccc-ccccccccccceeeccCC----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD--IVTFSKKMQ--LGGYFL-KPEFVPQQAYRVFNTWMG---- 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD--i~t~gK~lg--~gG~~~-~~~~~~~~~~~~~~T~~~---- 71 (119)
++|++||+++|+||++. ++.....+. ........+| +++++|+++ .|+++. .+++.+.... ...++++
T Consensus 165 ~l~~~~g~~livD~a~~-~~~~~~~~~-~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~ 241 (353)
T PLN02721 165 ELAKRHGLKLHIDGARI-FNASVALGV-PVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKR-LRKTLGGGMRQ 241 (353)
T ss_pred HHHHHcCCEEEEEchhh-hcchhhhCC-CHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHH-HHHhcCCCeeh
Confidence 47999999999999974 332110000 0000001145 448999996 344333 3333321100 1111111
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+..++++..+++... +..++.+++.+++.+.|+++
T Consensus 242 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~ 277 (353)
T PLN02721 242 VGVLAAAALVALQENV--PKLEDDHKKAKLLAEGLNQI 277 (353)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 1223333444443321 12334456667788888765
No 160
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=97.63 E-value=0.00015 Score=54.69 Aligned_cols=102 Identities=17% Similarity=0.089 Sum_probs=60.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc---cCccccc-ccccccc------ccce---
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ---LGGYFLK-PEFVPQQ------AYRV--- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg---~gG~~~~-~~~~~~~------~~~~--- 65 (119)
++|++||+++++|++|. +|.. ......++ +|+++ ..|.++ +.|++.. +.+.+.. ...+
T Consensus 148 ~~a~~~~~~li~D~~~~-~g~~--~~~~~~~~----~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (356)
T cd06451 148 ALAKKHDALLIVDAVSS-LGGE--PFRMDEWG----VDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDL 220 (356)
T ss_pred HHHHhcCCEEEEeeehh-ccCc--cccccccC----ccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecH
Confidence 47899999999999975 5432 11111122 67764 469886 1255443 2222110 0000
Q ss_pred -----------eeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 66 -----------FNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 -----------~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+.+.++....+..++++.+.+. ...++.+++.+++++.|+++
T Consensus 221 ~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 278 (356)
T cd06451 221 LLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL 278 (356)
T ss_pred HHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 112234566677778888887653 45667788888898988864
No 161
>PLN02509 cystathionine beta-lyase
Probab=97.61 E-value=0.00013 Score=58.07 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=59.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cc-cccccc--cceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PE-FVPQQA--YRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~-~~~~~~--~~~~~T~ 69 (119)
++|++||+++|+||+|. .+-.+.. .+.. +|++ ++.|.+++ ||++.. +. +..... .....+
T Consensus 241 ~lAk~~g~~lIVD~A~a-~~~~~~p-----l~~g--aDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~- 311 (464)
T PLN02509 241 EMAHAQGALVLVDNSIM-SPVLSRP-----LELG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGS- 311 (464)
T ss_pred HHHHHcCCEEEEECCcc-ccccCCh-----hhcC--CcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCC-
Confidence 47999999999999973 2222322 2222 7877 78899853 454442 22 111100 011122
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|..++.++..|+.+. ...++.+++.+++.+.|++
T Consensus 312 ~l~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L~~ 348 (464)
T PLN02509 312 GLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSS 348 (464)
T ss_pred CcCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhc
Confidence 468999998888888874 3556677777777777764
No 162
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=97.60 E-value=9.5e-05 Score=56.61 Aligned_cols=109 Identities=14% Similarity=-0.013 Sum_probs=52.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcch--hhhhcCCC-CCCCEEEEchhhc-cC---cccccc-cccccc-ccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW--CHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~--~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~ 71 (119)
++|++|++++|+||++..+--.+... ..+..+.. ....+.+|||.+| .| |++..+ .+.+.. ......+.+.
T Consensus 193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~ 272 (385)
T PRK09276 193 DFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGV 272 (385)
T ss_pred HHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhccCCC
Confidence 46899999999999987542112110 11111111 0133459999996 44 676643 232211 1000111133
Q ss_pred CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
+++...++.+.|+..++ ++..++++++-+++.+.|++.
T Consensus 273 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (385)
T PRK09276 273 FQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL 312 (385)
T ss_pred CHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44554555555532111 223444555566666666654
No 163
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=97.58 E-value=9.3e-05 Score=56.61 Aligned_cols=109 Identities=11% Similarity=-0.001 Sum_probs=52.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcch-hh-hhcCCC-CCCCEEEEchhhc-cC---ccccccc-ccccc-ccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW-CH-EHFDLE-ESPDIVTFSKKMQ-LG---GYFLKPE-FVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~-~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~~-~~~~~-~~~~~~T~~~ 71 (119)
++|++||+++|+||++..+-..+... .. ...+.. ....+-+|||.+| .| |++..+. +.+.. ......+.+.
T Consensus 191 ~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~ 270 (383)
T TIGR03540 191 EFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGV 270 (383)
T ss_pred HHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhcccCC
Confidence 47999999999999986442122110 00 111111 0133449999996 44 6665432 32211 1111112233
Q ss_pred CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
+++...++.+.|+-..+ ++.+++++++-+.+.+.|++.
T Consensus 271 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 310 (383)
T TIGR03540 271 FQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI 310 (383)
T ss_pred ChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444445454432111 123344555566666666653
No 164
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.58 E-value=0.00053 Score=52.08 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=58.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cC-ccccc-cccc----cccccce-----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LG-GYFLK-PEFV----PQQAYRV----- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~g-G~~~~-~~~~----~~~~~~~----- 65 (119)
++|++||+++|+|.+| .+|... .-.. ... +|++ ++.|++. .| |++.. +.+. .......
T Consensus 155 ~l~~~~~~~livDa~~-~~g~~~--~~~~--~~~--~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
T PRK13479 155 AVAKRHGKRLIVDAMS-SFGAIP--IDIA--ELG--IDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYD 227 (368)
T ss_pred HHHHHcCCEEEEEccc-ccCCcc--cccc--ccC--ceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHH
Confidence 4799999999999886 465321 1111 222 7776 7889873 23 55443 2221 1111100
Q ss_pred ---------eeccCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800 66 ---------FNTWMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ---------~~T~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l 109 (119)
...|..+.....+..++++.+.++ +..+++.++.+++++.|+++
T Consensus 228 ~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 284 (368)
T PRK13479 228 QWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL 284 (368)
T ss_pred HHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 111345666777777888877543 34456777777788877764
No 165
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=97.57 E-value=9.6e-05 Score=57.32 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=59.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc----cceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA----YRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~----~~~~~T 68 (119)
++|++||+++|+||++. .+..+.. .+.. .|++ +++|.+++ ||+++.+ .+....+ ...+ +
T Consensus 168 ~la~~~gi~livD~a~a-~~~~~~~-----~~~g--~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~-g 238 (391)
T TIGR01328 168 RDAHSQGVKVIVDNTFA-TPMLTNP-----VALG--VDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT-G 238 (391)
T ss_pred HHHHHcCCEEEEECCCc-hhccCCc-----hhcC--CCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCC-C
Confidence 47899999999999974 2222222 1222 6776 78899962 4666543 2322111 1111 2
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
...+|..++.++..|+.+. ...++.+++.+++.+.|++
T Consensus 239 ~~l~~~~a~l~l~~L~tl~--~r~~~~~~na~~la~~L~~ 276 (391)
T TIGR01328 239 SVISPFDAWLILRGLKTLN--IRMKRHSENAMKVAEYLKS 276 (391)
T ss_pred CCCCcHHHHHHHhCcCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 3568888887777666553 3456677788888887765
No 166
>PRK05942 aspartate aminotransferase; Provisional
Probab=97.56 E-value=0.00011 Score=56.54 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=54.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhh-hhcCCCC-CCCEEEEchhhc-cC---cccccc-ccccccc-cceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCH-EHFDLEE-SPDIVTFSKKMQ-LG---GYFLKP-EFVPQQA-YRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~-~~~g~~~-~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~-~~~~~T~~~ 71 (119)
++|++|++++|+||++.-+-..+.. ... ...+... ...+-+|||.+| .| |++..+ .+.+... ......++.
T Consensus 197 ~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~ 276 (394)
T PRK05942 197 AFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGI 276 (394)
T ss_pred HHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcccCC
Confidence 4789999999999997643211211 011 1111110 133458999886 34 666543 2322111 111112334
Q ss_pred CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
++++..++.++|+..++ ++.+++++++-+++.+.|++.
T Consensus 277 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (394)
T PRK05942 277 FSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL 316 (394)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 55555556666653321 234455666666677777653
No 167
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=97.56 E-value=0.00021 Score=54.22 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=48.3
Q ss_pred hCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800 6 HGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL 77 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a 77 (119)
+|+++|+||++..|-..+. .......+-. ...++ +|||.+| .| |++..+ .+.+.... ...++..|+++..
T Consensus 182 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~-~~~~~~~~~~~q~ 259 (359)
T PRK03158 182 SHVLVVLDEAYYEYVTAEDYPDTLPLLEKY-ENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNI-ARPPFNTTRIAQY 259 (359)
T ss_pred CCcEEEEECchHhhcCCcccccHHHHHHhc-CCEEEEEechHhhcCcchhhehhcCCHHHHHHHHH-hcCCCCCCHHHHH
Confidence 6999999999865411111 1111111111 12233 9999997 45 666543 23221111 1124567888888
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q psy4800 78 LLKGIIDTIHNENLLDRVQKTGDILLNVR 106 (119)
Q Consensus 78 ~a~a~l~~i~~~~~~~~~~~~g~~l~~~L 106 (119)
++.++|+ ++++.+++++..+..++.+
T Consensus 260 ~~~~~l~---~~~~~~~~~~~~~~~~~~~ 285 (359)
T PRK03158 260 AAIAALE---DQAFLKECVEKNAEGLEQY 285 (359)
T ss_pred HHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence 8877774 3344444433333333333
No 168
>PRK06290 aspartate aminotransferase; Provisional
Probab=97.55 E-value=0.00016 Score=56.25 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=52.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE--EEchhhc-cC---ccccccc-ccccc-ccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKPE-FVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~~-~~~~~-~~~~~~T~~~ 71 (119)
++|++|++++|.||++..+--.+.. ...+..+.. ..+|+ +|||.+| .| ||++.+. +.... ......+.+.
T Consensus 206 ~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~-~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~ 284 (410)
T PRK06290 206 DFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAK-EVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQ 284 (410)
T ss_pred HHHHHcCeEEEEecchhhceeCCCCcChhcCCCcc-ccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhccccCC
Confidence 4789999999999998654111211 111111111 12233 8999996 45 6766432 22211 1111112122
Q ss_pred CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.++..++.+.|+--+ .++.+++++++-+++.+.|++.
T Consensus 285 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 323 (410)
T PRK06290 285 FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV 323 (410)
T ss_pred cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344445545543211 1234455566666677777654
No 169
>PRK07681 aspartate aminotransferase; Provisional
Probab=97.55 E-value=0.00014 Score=56.03 Aligned_cols=109 Identities=15% Similarity=0.022 Sum_probs=52.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccccc-cceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQA-YRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~-~~~~~T~~~ 71 (119)
++|++||+++|.||++..+--.+.. ...+..+.. ....+-+|||.+| .| |+++.+ .+..... .....+++.
T Consensus 193 ~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~ 272 (399)
T PRK07681 193 AFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGV 272 (399)
T ss_pred HHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhcccCC
Confidence 4789999999999998755111211 111111110 0022338999996 44 666543 2332111 111123344
Q ss_pred CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+...++.+.|+--.+ ++.++.++++-+++.+.|++.
T Consensus 273 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (399)
T PRK07681 273 FLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF 312 (399)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 55555555555532110 122334455555666666553
No 170
>PRK08361 aspartate aminotransferase; Provisional
Probab=97.55 E-value=0.00016 Score=55.60 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=51.1
Q ss_pred ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-ccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~ 71 (119)
++|++|++++|+||+...|--.+. .........+ .+++ +|+|.+| .| |++..+ .+.... ......+++.
T Consensus 193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~ 270 (391)
T PRK08361 193 DIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPD--NTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGNV 270 (391)
T ss_pred HHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCC--CEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccCC
Confidence 368999999999999865411111 1111111111 3344 8999996 44 666543 232211 1111223344
Q ss_pred CHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHh
Q psy4800 72 DPGKVLLLKGIIDTIHN----ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~----~~~~~~~~~~g~~l~~~L~~ 108 (119)
+++...++...|+--.. ++..++++++-+.+.+.|++
T Consensus 271 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 311 (391)
T PRK08361 271 ASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE 311 (391)
T ss_pred ChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555532111 12233344445555555554
No 171
>PRK06767 methionine gamma-lyase; Provisional
Probab=97.55 E-value=5.9e-05 Score=58.28 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=56.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc----ccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ----AYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~----~~~~~~T 68 (119)
++|+++|+++|+||++. .+-.+... .+| .|++ +++|.+++ ||+++.+ .+.... ....++
T Consensus 170 ~la~~~g~~vivD~a~a-~~~~~~pl---~~g----~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~- 240 (386)
T PRK06767 170 RVAKRNGLLVIVDNTFC-SPYLQRPL---ELG----CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG- 240 (386)
T ss_pred HHHHHcCCEEEEECCCc-ccccCCch---hcC----CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC-
Confidence 47999999999999974 21122211 122 5777 56798852 4666543 322211 111122
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+|..+++++..|+.+. ...++.+++.+++.+.|++.
T Consensus 241 -~~~~~~a~l~~~~L~tl~--~r~~~~~~~a~~la~~L~~~ 278 (386)
T PRK06767 241 -IMAPFDAWLLLRGLKTLA--VRMDRHCDNAEKIVSFLKNH 278 (386)
T ss_pred -CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHcC
Confidence 346777666665555443 34566778888888887753
No 172
>PRK14012 cysteine desulfurase; Provisional
Probab=97.55 E-value=0.00063 Score=52.57 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=55.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc-c--Cccccccccc-cccccce-------ee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ-L--GGYFLKPEFV-PQQAYRV-------FN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg-~--gG~~~~~~~~-~~~~~~~-------~~ 67 (119)
++|++||+++|+|++|+ +|..-.- .. ... +|+++++ |.+| . |++++.+... ...+... +.
T Consensus 168 ~la~~~g~~vivD~a~~-~g~~~~~--~~--~~~--~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~ 240 (404)
T PRK14012 168 EICRERGIIFHVDAAQS-VGKVPID--LS--KLK--VDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMR 240 (404)
T ss_pred HHHHHcCCEEEEEcchh-cCCcccC--cc--cCC--CCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCccCCcc
Confidence 47999999999999985 4332111 11 223 8999887 9775 2 3334443221 1111111 11
Q ss_pred ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
....+........++++.++. ++..++.+++.+++.+.|+++
T Consensus 241 ~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 284 (404)
T PRK14012 241 SGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI 284 (404)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 111233344444466666543 235566777777888877653
No 173
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=97.54 E-value=9.6e-05 Score=57.51 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=59.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc-ccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~-~~~~~~T~~~ 71 (119)
++|++||+++|+||++..+ ..... .... +|++ +++|.+++ ||+++.+ .+.+.. ..........
T Consensus 173 ~la~~~gi~livD~t~a~~-~~~~~-----l~~~--~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~ 244 (398)
T PRK08249 173 AAAKKVGALVVVDNTFATP-INQNP-----LALG--ADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM 244 (398)
T ss_pred HHHHHcCCEEEEECCcCcc-ccCCc-----hhhC--CCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 4799999999999997521 11111 1122 6766 78899952 4665543 232211 1111223367
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
+|..+..++..++.+. ...++.+++.+.+.+.|++
T Consensus 245 s~~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~ 279 (398)
T PRK08249 245 DPMSAYLILRGMKTLK--LRVRQQQESAMALAKYLQT 279 (398)
T ss_pred CHHHHHHHHhCcchHH--HHHHHHHHHHHHHHHHHHc
Confidence 8888888888887774 3445666777777777764
No 174
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=97.53 E-value=0.00035 Score=52.68 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=50.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~ 72 (119)
++|++|++++|+||+..-|...+..-......- .+.++ +|||.+| .| ||++.+ .+.+.... ....+..+
T Consensus 149 ~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~-~~~~~~~~ 225 (332)
T PRK06425 149 EICRKKGALLFIDEAFIDFVPNRAEEDVLLNRS--YGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRK-ITEPWSVC 225 (332)
T ss_pred HHHHHcCCEEEEecchhccccccchhHHHHhcc--CCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHH-cCCCCccC
Confidence 368899999999999765522121111111111 13333 8999997 45 676643 23321111 11122233
Q ss_pred HHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 73 PGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 73 p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+.++ +...+.-. .++..+.+++.-+++.+.|+++
T Consensus 226 ~~~~~~-l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 262 (332)
T PRK06425 226 DPAIDF-IRSIDLDYVAKHSLDIMENERSYLINNLEAM 262 (332)
T ss_pred HHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333222 21211100 0134455566666677777654
No 175
>PRK08960 hypothetical protein; Provisional
Probab=97.53 E-value=0.00027 Score=54.24 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=51.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccc-cccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~ 71 (119)
++|++||+++|+||++..+ ..+... ....... ++++ +|+|.+| .| |++..+ .+... .......+.+.
T Consensus 192 ~~~~~~~~~li~De~Y~~~-~~~~~~-~~~~~~~--~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~ 267 (387)
T PRK08960 192 QALRARGGHLVVDEIYHGL-TYGVDA-ASVLEVD--DDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLYISA 267 (387)
T ss_pred HHHHHcCCEEEEEcccccc-ccCCCC-CChhhcc--CCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhccCC
Confidence 3689999999999998765 222110 1112333 5655 6999986 22 554432 23221 11111223344
Q ss_pred CHHHHHHHHHHHHH-Hhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 72 DPGKVLLLKGIIDT-IHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 72 ~p~~~a~a~a~l~~-i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
+++.-.++.+.++- ..+ .+.++.++++-+.+.+.|++
T Consensus 268 s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 307 (387)
T PRK08960 268 STPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE 307 (387)
T ss_pred CHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665656565531 100 12233344444455555544
No 176
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.53 E-value=0.00018 Score=55.65 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=55.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-c-ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-Q-AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~-~~~~~~T~~ 70 (119)
++|++||+++|+||+|. .|-..... .+| +|++ ++.|.+++ ||++..+ ..... . ....+++ .
T Consensus 159 ~la~~~g~~livD~t~a-~g~~~~pl---~~g----aDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~-~ 229 (377)
T TIGR01324 159 KAARNPGIVIMIDNTWA-AGLLFKPL---EHG----VDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQ-M 229 (377)
T ss_pred HHHHHcCCEEEEECCCc-cccccCcc---ccC----ceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCC-C
Confidence 47999999999999985 33232221 123 7887 45999951 4555433 22111 1 1122233 5
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+...+..++.+. -..++.+++...+.+.|++
T Consensus 230 l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L~~ 265 (377)
T TIGR01324 230 VDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWLSE 265 (377)
T ss_pred CCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHh
Confidence 67877666666666442 2345666666666666654
No 177
>PRK08912 hypothetical protein; Provisional
Probab=97.53 E-value=0.00015 Score=55.67 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=54.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~ 70 (119)
++|++|++++|+||++..+--.+.. -.....+.. ..+++ +|||.+| .| |++..+ .+.... ......++.
T Consensus 186 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~ 264 (387)
T PRK08912 186 EFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMR-ERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFT 264 (387)
T ss_pred HHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCcc-CceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccc
Confidence 4689999999999998643111211 011111221 12333 8999997 45 666543 222211 111122344
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+|....++.+.+....+ +++.++++++-+++.+.|++.
T Consensus 265 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK08912 265 TPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI 305 (387)
T ss_pred CChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555555555531111 234555666667777777654
No 178
>PRK08175 aminotransferase; Validated
Probab=97.52 E-value=0.00015 Score=55.86 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=52.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC--E--EEEchhhc-cC---cccccc-cccccc-ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD--I--VTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD--i--~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~ 70 (119)
++|++||+++|+||+...+--.+... .....+...+| + -+|||.+| .| |+++.+ .+.+.. .......++
T Consensus 191 ~~a~~~~i~ii~De~y~~l~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~ 269 (395)
T PRK08175 191 ALAKRYDVLVVHDLAYADIVYDGWKA-PSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYG 269 (395)
T ss_pred HHHHHcCcEEEEecchHhhccCCCCC-cchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhhcccC
Confidence 47999999999999986541112110 01111111133 2 38999996 33 566543 233211 111112233
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
.++....++.+.|+-.+. +.++++++++-+++.+.|++.
T Consensus 270 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 310 (395)
T PRK08175 270 TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA 310 (395)
T ss_pred CCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555532111 123444555656666666654
No 179
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=97.52 E-value=0.00019 Score=54.44 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=51.9
Q ss_pred ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE--EEchhhc-cC---ccccccc-cccc-cccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKPE-FVPQ-QAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~~-~~~~-~~~~~~~T~~~ 71 (119)
++|++||+++|+||++.-+ ..+. .......+.+ ..++ +|+|.+| .| |++..+. +.+. .......+.+.
T Consensus 163 ~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~--~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR03537 163 AMCREHGIILCSDECYTEI-YFGEPPHSALEVGIE--NVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVAS 239 (350)
T ss_pred HHHHHcCcEEEEecccccc-ccCCCCCchhhcCcC--CEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhccCC
Confidence 4689999999999997532 1222 1111111111 1232 7899986 34 6665432 3221 11111122244
Q ss_pred CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
++++..++.+.+..-+ ..+.+++++++.+.+.+.|++.
T Consensus 240 ~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~ 278 (350)
T TIGR03537 240 PDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV 278 (350)
T ss_pred CHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5555555555543100 0123445666666666666553
No 180
>PRK08068 transaminase; Reviewed
Probab=97.51 E-value=0.0002 Score=55.01 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=52.0
Q ss_pred ChhhhhCCEEEEccccccccCCCc-c-hhhhhcCCCC-CCCEEEEchhhc-cC---ccccccc-cccc-cc-cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK-F-WCHEHFDLEE-SPDIVTFSKKMQ-LG---GYFLKPE-FVPQ-QA-YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~-~-~~~~~~g~~~-~pDi~t~gK~lg-~g---G~~~~~~-~~~~-~~-~~~~~T~~ 70 (119)
++|++|++++|+||++.-+...+. . ......+... ...+-+|||.+| .| |+++.+. +.+. .. ....+. +
T Consensus 194 ~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~-~ 272 (389)
T PRK08068 194 AFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFV-S 272 (389)
T ss_pred HHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhccC-C
Confidence 478999999999999865432231 1 1111122110 022338999997 45 6665432 3221 00 011111 2
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
.++....++.+.+..-.+ +.++++++++-+++.+.|+++
T Consensus 273 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~ 313 (389)
T PRK08068 273 LFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI 313 (389)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 233333333344321011 234455666666677777654
No 181
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=97.50 E-value=0.00019 Score=55.29 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=54.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~~p 73 (119)
++|++|++++|+||++..+--.|.. .....+..+...-+-+|+|.+| .| |++..+ .+... .....+++.+.++
T Consensus 193 ~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~ 272 (391)
T PRK07309 193 DVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATT 272 (391)
T ss_pred HHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCCh
Confidence 4789999999999998754211221 1111111110011228999986 44 565543 33321 1111122224566
Q ss_pred HHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 74 GKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 74 ~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l 109 (119)
++..++.+.|+.-. ......+++++-+++.+.|++.
T Consensus 273 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (391)
T PRK07309 273 MAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL 310 (391)
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 66666655554311 1123344555656666666653
No 182
>PRK06348 aspartate aminotransferase; Provisional
Probab=97.47 E-value=0.00018 Score=55.25 Aligned_cols=106 Identities=13% Similarity=0.029 Sum_probs=55.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhh-hhcCCCCCCCE---EEEchhhc-cC---cccccc-cccccc-ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCH-EHFDLEESPDI---VTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~-~~~g~~~~pDi---~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~ 70 (119)
++|++|++++|.||+...+--.+..-.. ...+.. +.+ .+|||.++ .| |++..+ .+.... ......++.
T Consensus 189 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~ 266 (384)
T PRK06348 189 KIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP--ERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGICFS 266 (384)
T ss_pred HHHHHCCeEEEEecccccceeCCCccchhhcCCCc--CcEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhccCC
Confidence 4689999999999998765211111011 111111 222 28999986 33 565543 232211 111223456
Q ss_pred CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
.++++-.++..+|+..++ +++++..+++-+++.+.|++
T Consensus 267 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~ 306 (384)
T PRK06348 267 APTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES 306 (384)
T ss_pred CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777666653221 12334445555566666654
No 183
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=97.47 E-value=0.00028 Score=54.12 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=61.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccc--ccccc-------c----c
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLK--PEFVP-------Q----Q 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~--~~~~~-------~----~ 61 (119)
++|++||+++|.|++|+ +|-. . .....|....-|+.++| |.++ .||+++. +.+.+ . .
T Consensus 142 ~l~~~~~~~lI~D~a~a-~g~~-~--~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~ 217 (380)
T TIGR03588 142 ALAKKHGLKIIEDASHA-LGAE-Y--GGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKD 217 (380)
T ss_pred HHHHHcCCEEEEECCCc-ccCc-c--CCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCC
Confidence 47999999999999986 3321 0 00112320015888877 8885 4666553 11110 0 0
Q ss_pred c----------cc-----eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 62 A----------YR-----VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 ~----------~~-----~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
. .. .+..+..+.+..+.+++.|+.+ ++..++-+++.+++.+.|..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~ 278 (380)
T TIGR03588 218 PLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDL 278 (380)
T ss_pred cccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence 0 00 1122345777777777777766 345667788888999988775
No 184
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=97.46 E-value=0.00055 Score=53.21 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=58.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccc-ccccccccccc-----------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFL-KPEFVPQQAYR----------- 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~-~~~~~~~~~~~----------- 64 (119)
++|++||+++|+|++|. +|..- .-.+ ... +|++ ++.|.+| +-|+.. ...+.+..++.
T Consensus 197 ~l~~~~g~~vivD~a~~-~g~~~--~~~~--~~~--~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~ 269 (424)
T PLN02855 197 HWAHAVGAKVLVDACQS-VPHMP--VDVQ--TLG--ADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVF 269 (424)
T ss_pred HHHHHcCCEEEEEhhhh-cCCcC--CCch--hcC--CCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeee
Confidence 47999999999999984 43321 1111 222 7877 6789654 123433 22221110000
Q ss_pred -----------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 65 -----------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
-+..-..+....++..++++.+.+. +..++.+++.+++++.|+++
T Consensus 270 ~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~ 328 (424)
T PLN02855 270 LDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSV 328 (424)
T ss_pred cCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 0111124556777777888887653 45567778888888887664
No 185
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=97.46 E-value=9.7e-05 Score=49.19 Aligned_cols=43 Identities=30% Similarity=0.305 Sum_probs=30.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg 47 (119)
++|+++|+++|+||++.++...... ...... .+|+++.| |.++
T Consensus 116 ~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~--~~d~~~~s~~K~~~ 160 (170)
T cd01494 116 KIAKEYGILLLVDAASAGGASPAPG--VLIPEG--GADVVTFSLHKNLG 160 (170)
T ss_pred HHHHHcCCEEEEecccccccccccc--cccccc--cCCEEEEEcccccC
Confidence 4799999999999998866443322 111222 38999888 9995
No 186
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=97.45 E-value=0.0008 Score=51.69 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=58.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC-cccc-ccccccccccc-----------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG-GYFL-KPEFVPQQAYR----------- 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g-G~~~-~~~~~~~~~~~----------- 64 (119)
++|++||+++|+|++|. +|.. ..-.. ... +|++ ++.|.+| .| |+.. .+.+.+..++.
T Consensus 183 ~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~ 255 (403)
T TIGR01979 183 KLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALD--CDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVS 255 (403)
T ss_pred HHHHHcCCEEEEEchhh-cCcc--ccCcc--ccC--CCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecc
Confidence 37999999999999974 3321 11111 122 7887 5569876 22 4543 22222111000
Q ss_pred -----------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 65 -----------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
.+..-..+..+.++..++++.+.+. ...++..++.+++++.|+++
T Consensus 256 ~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 314 (403)
T TIGR01979 256 FEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEI 314 (403)
T ss_pred cCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 0111124555667778888887653 45677888888888887764
No 187
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=97.45 E-value=0.0011 Score=50.60 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=57.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc---Cccccccccccccccc-------eeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL---GGYFLKPEFVPQQAYR-------VFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~---gG~~~~~~~~~~~~~~-------~~~T 68 (119)
++|++||+++++|++|. +|.. ..-.. .. .+|+++++ |.+|. |+++++..+. ..+.. -...
T Consensus 164 ~la~~~g~~~ivD~a~~-~g~~--~~~~~--~~--~~D~~~~s~~K~~gp~G~g~l~vr~~~~-~~p~~~g~~~~~~~~~ 235 (382)
T TIGR03403 164 EICKERGVLFHTDAVQA-IGKI--PVDVQ--KA--GVDFLSFSAHKFHGPKGVGGLYIRKGVE-LTPLFHGGEHMGGRRS 235 (382)
T ss_pred HHHHHcCCEEEEechhh-cCCC--ccCcc--cc--CCCEEEEcchhhCCCCceEEEEECCCCC-CCCcccCCCCCCCccc
Confidence 47899999999999975 3321 11111 12 28999888 97652 2233332221 00100 0112
Q ss_pred cCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
...|..+..+..++++.+.+ +...++++++.+++++.|+++
T Consensus 236 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 278 (382)
T TIGR03403 236 GTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL 278 (382)
T ss_pred CCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566777677778877654 234456777777777777653
No 188
>PRK03321 putative aminotransferase; Provisional
Probab=97.45 E-value=0.00023 Score=53.84 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=45.9
Q ss_pred hhhh--hCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccC
Q psy4800 2 YEKY--HGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWM 70 (119)
Q Consensus 2 l~~~--~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~ 70 (119)
+|++ +++++|+||++..|-..+.. -..+..... ++++ +|||.+| .| |++..+ .+.+.... ...++.
T Consensus 170 l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~-~~~~~~ 246 (352)
T PRK03321 170 FLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDH--PNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRK-VAVPFS 246 (352)
T ss_pred HHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhC--CCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHH-hcCCCC
Confidence 4554 69999999998765332221 112222222 5655 7999996 44 666643 33322111 124556
Q ss_pred CCHHHHHHHHHHHH
Q psy4800 71 GDPGKVLLLKGIID 84 (119)
Q Consensus 71 ~~p~~~a~a~a~l~ 84 (119)
.++++..++.++|+
T Consensus 247 ~s~~~q~~a~~~l~ 260 (352)
T PRK03321 247 VNSLAQAAAIASLA 260 (352)
T ss_pred CCHHHHHHHHHHhc
Confidence 78888887777775
No 189
>PLN02651 cysteine desulfurase
Probab=97.43 E-value=0.00073 Score=51.47 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=58.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc---cCccccccccccc-cccce-------ee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ---LGGYFLKPEFVPQ-QAYRV-------FN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg---~gG~~~~~~~~~~-~~~~~-------~~ 67 (119)
++|++||+++++|.+|+ +|.. ..-.+ .+. +|++++ -|.+| .|.++++++.... .+... +.
T Consensus 162 ~~~~~~g~~~~vD~a~~-~g~~--~~~~~--~~~--~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~ 234 (364)
T PLN02651 162 ELCREKKVLFHTDAAQA-VGKI--PVDVD--DLG--VDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRR 234 (364)
T ss_pred HHHHHcCCEEEEEcchh-hCCc--ccCcc--cCC--CCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCcc
Confidence 47999999999999986 3321 11122 223 788855 46433 2233344432211 11111 11
Q ss_pred ccCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~ 108 (119)
....|..++.+..++|+++.+. +..++.+++.+++++.|++
T Consensus 235 ~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~ 277 (364)
T PLN02651 235 SGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA 277 (364)
T ss_pred CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 2235666778888899988653 4556777888888887764
No 190
>PRK07568 aspartate aminotransferase; Provisional
Probab=97.42 E-value=0.00042 Score=53.13 Aligned_cols=106 Identities=18% Similarity=0.132 Sum_probs=53.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcch-h-hhhcCCCCCCCEE---EEchhhccC----ccccc--cccccccccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW-C-HEHFDLEESPDIV---TFSKKMQLG----GYFLK--PEFVPQQAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~-~~~~g~~~~pDi~---t~gK~lg~g----G~~~~--~~~~~~~~~~~~~T~ 69 (119)
++|++|++++|+||+...|...+... . ....+.. +.++ +|||.++.. |+++. +.+..........++
T Consensus 189 ~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~--~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~ 266 (397)
T PRK07568 189 EIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLE--DRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARL 266 (397)
T ss_pred HHHHHCCcEEEEeccchhcccCCCCccChhhcCCCc--CCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccC
Confidence 47899999999999988764334211 1 1111211 3444 899998522 34332 223221100111234
Q ss_pred CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+++...++.+.|+.-++ +++.+.++++-+.+.+.|++
T Consensus 267 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 307 (397)
T PRK07568 267 SPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK 307 (397)
T ss_pred CCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556665555555542111 12334455555666666654
No 191
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=97.42 E-value=0.0003 Score=53.49 Aligned_cols=102 Identities=12% Similarity=0.027 Sum_probs=52.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc---Cccccc-ccccc----cccc-------ce
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL---GGYFLK-PEFVP----QQAY-------RV 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~---gG~~~~-~~~~~----~~~~-------~~ 65 (119)
++|++||+++|+||++. +|... +....++.+ ..+.+++|+++. .|++.. +.+.+ .... ..
T Consensus 163 ~~~~~~~~~vivD~a~~-~g~~~--~~~~~~~~d--~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~ 237 (361)
T cd06452 163 KVCHEYGVPLLLNGAYT-VGRMP--VSGKELGAD--FIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELL 237 (361)
T ss_pred HHHHHcCCeEEEECCcc-cCCcC--CCHHHcCCC--EEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeee
Confidence 47999999999999975 43222 222233432 334478899852 255543 22221 1111 11
Q ss_pred eeccCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800 66 FNTWMGDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ~~T~~~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l 109 (119)
++| .++.....+.++++.+.+. +...+..++.+++++.|+++
T Consensus 238 ~~~--~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l 280 (361)
T cd06452 238 GCT--LRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI 280 (361)
T ss_pred ccc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112 2223444555666654321 22233334457888888765
No 192
>PLN02242 methionine gamma-lyase
Probab=97.40 E-value=0.0002 Score=56.12 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=53.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc-cc----eee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA-YR----VFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~-~~----~~~ 67 (119)
++|++||+++|+||+++.+ .... ..+| .|++ +++|.+++ ||+++.+ .+..... .. ...
T Consensus 187 ~la~~~gi~livDea~~~~-~~~~----~~~g----~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~ 257 (418)
T PLN02242 187 RIAHEKGVTVVVDNTFAPM-VLSP----ARLG----ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLL 257 (418)
T ss_pred HHHHHhCCEEEEECCCCcc-CCCH----HHcC----CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhcc
Confidence 4799999999999998533 2211 1223 5665 89999852 4666543 2222111 11 111
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
....+|..++.....++.+ +...++.+++.+++.+.|++.
T Consensus 258 g~~~~~~~A~l~~~~l~tl--~~r~~~~~~~a~~la~~L~~~ 297 (418)
T PLN02242 258 GPTMNPKVAFELSERLPHL--SLRMKEHCRRAMEYAKRMKEL 297 (418)
T ss_pred CCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence 1123344433333333322 234567788888888888875
No 193
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=97.40 E-value=0.0006 Score=51.84 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=51.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---ccccc-c-ccccccccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLK-P-EFVPQQAYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~-~-~~~~~~~~~~~~T~~~~ 72 (119)
++|++|++++|+||+...|-..+........... .+++ +|+|.++ .| |+++. + .+...... ....+..+
T Consensus 169 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~-~~~~~~~~ 245 (356)
T PRK08056 169 ERCKSLNIALILDEAFIDFIPDETGFIPQLADNP--HLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRR-QQMPWSIN 245 (356)
T ss_pred HHHHhcCCEEEEecchhccCCcchHHHHHhccCC--CEEEEEechhhccCcchhheeeecCCHHHHHHHHH-hCCCCchh
Confidence 3689999999999998766222221111111111 2333 8999996 32 45443 2 23221111 11233445
Q ss_pred HHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHhh
Q psy4800 73 PGKVLLLKGIIDTIHNEN----LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~----~~~~~~~~g~~l~~~L~~l 109 (119)
+++..++.+.+ +.+. ..++++++-+++.+.|+++
T Consensus 246 ~~~~~~a~~~l---~~~~~~~~~~~~~~~~r~~l~~~L~~~ 283 (356)
T PRK08056 246 AFAALAGEVIL---QDRAYQQATWQWLAEEGARFYQALCAL 283 (356)
T ss_pred HHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55555555554 2222 2344555555666666543
No 194
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=97.39 E-value=0.00036 Score=53.12 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=52.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhc--CCCCCCCEE---EEchhhc-cC---cccccc-cccccc-ccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHF--DLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~--g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T 68 (119)
++|++||+++|.||++..+.-.+.. ...... +.. .+.++ +|+|.++ .| |++..+ .+.... ......+
T Consensus 175 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~~ 253 (364)
T PRK07865 175 AWARERGAVVASDECYLELGWDAEPVSILDPRVCGGD-HTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHAG 253 (364)
T ss_pred HHHHHcCCEEEEecchhhhccCCCCCccccccccCCc-cceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHHhcC
Confidence 3689999999999998755322221 111110 111 11222 8999985 34 676543 232211 1111122
Q ss_pred cCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~ 108 (119)
+..+++...++.+.|+.-+. ++.++..+++-+.+.+.|++
T Consensus 254 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 294 (364)
T PRK07865 254 MMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEA 294 (364)
T ss_pred CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456655555555532110 12334455555566666655
No 195
>PRK07683 aminotransferase A; Validated
Probab=97.37 E-value=0.00058 Score=52.52 Aligned_cols=107 Identities=13% Similarity=0.092 Sum_probs=53.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCC-E--EEEchhhc-cC---ccccccc-ccccc-ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPD-I--VTFSKKMQ-LG---GYFLKPE-FVPQQ-AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pD-i--~t~gK~lg-~g---G~~~~~~-~~~~~-~~~~~~T~~ 70 (119)
++|+++|+++|+||++..+-..+.. ......+.. .. + -+|||.+| .| |++..+. +.... ....++..+
T Consensus 188 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~ 265 (387)
T PRK07683 188 DVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMR--EKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTC 265 (387)
T ss_pred HHHHHcCeEEEEecccccceeCCCcCChhhccCCc--CCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhccCC
Confidence 4789999999999998754111111 111111221 12 2 28999997 45 6665432 32211 111122223
Q ss_pred CCHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l 109 (119)
.++++..++.+.|+.-. -+..+++++++-+++.+.|++.
T Consensus 266 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (387)
T PRK07683 266 ASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM 306 (387)
T ss_pred CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555555553211 1123444556666677777653
No 196
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=97.36 E-value=0.00042 Score=52.58 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCEEEEccccccccCCCcch-hhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHHHHH
Q psy4800 7 GSALLIDEVQTGGGPCGKFW-CHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVLLLK 80 (119)
Q Consensus 7 ~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a~a~ 80 (119)
++++|.||++..|...+... ..+..+-. .-+-+|||.++ .| ||++.+ .+...... ..+++..++++..++.
T Consensus 186 ~~~iI~De~y~~~~~~~~~~~~~~~~~~v--i~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ 262 (357)
T PRK14809 186 ETLVVVDEAYGEFAERPSAVALVEERDDV--AVLRTFSKAYGLAGLRLGYAVVPEEWADAYAR-VNTPFAASELACRAGL 262 (357)
T ss_pred CcEEEEechhhhccCCchhHHHHhhCCCE--EEEecchhHhcCcchhheeeecCHHHHHHHHH-hCCCCCCCHHHHHHHH
Confidence 78999999987663322211 11111111 23348999996 45 666543 33321111 1235567788777777
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHH
Q psy4800 81 GIIDTIHNENLLDRVQKTGDILLNVR 106 (119)
Q Consensus 81 a~l~~i~~~~~~~~~~~~g~~l~~~L 106 (119)
+.|+ ++++.++.++.-+..++.+
T Consensus 263 ~~l~---~~~~~~~~~~~~~~~r~~l 285 (357)
T PRK14809 263 AALD---DDEHVERTVETARWAREYI 285 (357)
T ss_pred HHhC---CHHHHHHHHHHHHHHHHHH
Confidence 6663 3344444433333334444
No 197
>PRK09148 aminotransferase; Validated
Probab=97.35 E-value=0.00031 Score=54.46 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=52.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcch-hhhhcCCCCCCC----EEEEchhhc-cC---ccccccc-cccc-cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLEESPD----IVTFSKKMQ-LG---GYFLKPE-FVPQ-QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pD----i~t~gK~lg-~g---G~~~~~~-~~~~-~~~~~~~T~ 69 (119)
++|++|++++|+||++..|---+... ..... ...+| +-+|||.+| .| |+++.+. +.+. .......++
T Consensus 192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~--~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~ 269 (405)
T PRK09148 192 AFAKKHDIIILSDLAYSEIYFDGNPPPSVLQV--PGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDY 269 (405)
T ss_pred HHHHHcCeEEEEeccchhhhcCCCCCCChhhC--CCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhcc
Confidence 47899999999999986541111111 01111 11123 238999996 44 6666532 3221 111112233
Q ss_pred CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
+.++++-.++.+.|+--++ ++.++.++++-+++.+.|++
T Consensus 270 ~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~ 310 (405)
T PRK09148 270 GAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR 310 (405)
T ss_pred CCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555531111 12333445555556666654
No 198
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=97.35 E-value=0.00033 Score=53.25 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=52.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchh-hhh--cCCCCCCCEE--EEchhhc-c---Ccccccc-cccccc-ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEH--FDLEESPDIV--TFSKKMQ-L---GGYFLKP-EFVPQQ-AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~--~g~~~~pDi~--t~gK~lg-~---gG~~~~~-~~~~~~-~~~~~~T~ 69 (119)
++|++||+++|+||++..+...+.... ... .+......|+ +|+|.++ . .|++..+ .+.+.. .......+
T Consensus 169 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~~~~ 248 (357)
T TIGR03539 169 AWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHAGL 248 (357)
T ss_pred HHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHhhccc
Confidence 478999999999999865543232111 110 0111001233 8999975 2 2565543 232211 11112233
Q ss_pred CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~ 108 (119)
..++++..++.+.|+.-.. .+.+.+++++-+++.+.|++
T Consensus 249 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 288 (357)
T TIGR03539 249 MVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK 288 (357)
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555532110 12334455555566666655
No 199
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=97.34 E-value=0.00021 Score=55.42 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=56.8
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cc-ccccc-ccccccc-cceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GG-YFLKP-EFVPQQA-YRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG-~~~~~-~~~~~~~-~~~~~T~ 69 (119)
++|++||+++|+||++. |+ ..... ..| .|++ .+.|.+++ || ++..+ .+.+... .....+.
T Consensus 161 ~la~~~gi~livD~t~a~~~--~~~~l---~~G----aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~ 231 (385)
T PRK08574 161 KAAKELGAILVVDNTFATPL--LYRPL---RHG----ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGT 231 (385)
T ss_pred HHHHHcCCEEEEECCCCccc--cCChh---hhC----CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCC
Confidence 47999999999999984 32 11111 123 5766 78999952 46 33322 2222111 1111223
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|..++.++..|+.+.. ..++..++..++.+.|++
T Consensus 232 ~~~p~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L~~ 268 (385)
T PRK08574 232 IMQPFEAYLVLRGLKTLEV--RFERQCRNAMAIAEFLSE 268 (385)
T ss_pred CCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHHHc
Confidence 6778888888888777642 445555666677666653
No 200
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=97.34 E-value=0.00042 Score=52.58 Aligned_cols=101 Identities=15% Similarity=0.244 Sum_probs=54.6
Q ss_pred hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800 3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG 74 (119)
Q Consensus 3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~ 74 (119)
|++++.++|+||+..-|.. .... . .+...++++ +|||.+| .| ||.+.+ .+.+..... ...+..+.+
T Consensus 159 ~~~~~~~vI~DEay~~~~~-~~s~-~---~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~-~~~~~vs~~ 232 (339)
T PRK06959 159 LAARGGTLIVDEAFADTLP-AASL-A---AHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDA-LGAWTVSGP 232 (339)
T ss_pred HHHcCCEEEEECCCccCCC-cccc-h---hccCCCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHh-cCCCCCcHH
Confidence 5678999999999765521 1111 1 111124443 8999997 56 776653 233211100 123345666
Q ss_pred HHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 75 KVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 75 ~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
+..++.++|+--+ .+..++++++.-+++.+.|+++
T Consensus 233 ~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 268 (339)
T PRK06959 233 ARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH 268 (339)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6666766664211 1234455666666777777665
No 201
>PRK07503 methionine gamma-lyase; Provisional
Probab=97.33 E-value=0.00048 Score=53.67 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=57.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc---cceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA---YRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~---~~~~~T~ 69 (119)
++|++||+++|+|+++.. +..+.. .+.. +|++ .++|.+++ ||+++.+ .+....+ .......
T Consensus 174 ~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g--~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~ 245 (403)
T PRK07503 174 EIAHGAGAKVVVDNTYCT-PYLQRP-----LELG--ADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGA 245 (403)
T ss_pred HHHHHcCCEEEEECCCcc-cccCCc-----hhhC--CCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCC
Confidence 479999999999999852 122222 1222 6876 68899963 4665532 2322111 0111234
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|+.++.++..|+.+.. ..++..++...+.+.|++
T Consensus 246 ~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~~a~~L~~ 282 (403)
T PRK07503 246 VMSPFDAFLLMRGLKTLAL--RMDRHCASAQAVAEWLAR 282 (403)
T ss_pred CCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHh
Confidence 6789988888877776642 334444666666666654
No 202
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.32 E-value=0.00026 Score=55.08 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-ccc-ceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-QAY-RVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~~~-~~~~T~ 69 (119)
++|+++|+++|+||++. ++ ..... .+| .|++ .++|.+++ ||+++.+ .+... ... ......
T Consensus 174 ~la~~~gi~lvvD~a~a~~~--~~~~~---~~g----aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~ 244 (398)
T PRK07504 174 KIANQAGAKLVVDNVFATPL--FQKPL---ELG----AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGP 244 (398)
T ss_pred HHHHHcCCEEEEECCccccc--cCCch---hhC----CCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCC
Confidence 47999999999999985 32 11111 123 6776 67898852 4555542 22211 110 111122
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|..++.++..|+.+.. ..++.+++.+.+.+.|++
T Consensus 245 ~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L~~ 281 (398)
T PRK07504 245 SLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFLAG 281 (398)
T ss_pred CCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHc
Confidence 5788998888888888743 445556777777777764
No 203
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=97.32 E-value=0.00062 Score=51.35 Aligned_cols=104 Identities=22% Similarity=0.149 Sum_probs=54.2
Q ss_pred hhhhh-CCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-cc-ceeeccCC
Q psy4800 2 YEKYH-GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AY-RVFNTWMG 71 (119)
Q Consensus 2 l~~~~-~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~-~~~~T~~~ 71 (119)
+++++ ++++|+||++..|+. ... ....... ...++ +|+|.++ .| |++..+ .+.+.. .. ....++..
T Consensus 169 l~~~~~~~~livDe~y~~~~~--~~~-~~~~~~~-~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~~~ 244 (353)
T PRK05387 169 ILAANPDSVVVIDEAYVDFGG--ESA-IPLIDRY-PNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPL 244 (353)
T ss_pred HHHhCCCcEEEEeCcccccCC--cch-HHHHhhC-CCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCCCc
Confidence 45554 999999999865632 111 1111111 12233 8999986 45 666543 232211 11 11234456
Q ss_pred CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
++++..++.+.|+.-+ -++..++++++-+++.+.|++.
T Consensus 245 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 283 (353)
T PRK05387 245 DRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL 283 (353)
T ss_pred CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6777766666664211 0234455666666777777654
No 204
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=97.28 E-value=0.00082 Score=51.83 Aligned_cols=108 Identities=9% Similarity=0.016 Sum_probs=51.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhccC----cccccc-------cccccccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQLG----GYFLKP-------EFVPQQAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg~g----G~~~~~-------~~~~~~~~~~~ 66 (119)
++|++||+++|+||+...|-..+.... ....+.....++ +|||.++.. |+++.. .+.........
T Consensus 195 ~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~ 273 (401)
T TIGR01264 195 AVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ 273 (401)
T ss_pred HHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh
Confidence 478999999999999876632332111 111222001233 899985422 444432 11111111111
Q ss_pred eccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+++.++++..++.+.|+--.+ ++.+++++++-+++.+.|+++
T Consensus 274 ~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~ 319 (401)
T TIGR01264 274 RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV 319 (401)
T ss_pred ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2334466666666666642111 122334445555555666553
No 205
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=97.27 E-value=0.00045 Score=53.48 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--ccccccc-ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQ-AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~-~~~~~~T~ 69 (119)
++|+++|+++|+||++. +... .. .... +|++ +++|.+++ +|++.. ..+.... ......+.
T Consensus 160 ~la~~~g~~vvvD~a~~~~~~~--~p-----l~~g--aDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~ 230 (382)
T TIGR02080 160 HLAKAVGAVVVVDNTFLSPALQ--NP-----LALG--ADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGV 230 (382)
T ss_pred HHHHHcCCEEEEECCCcccccC--Cc-----hhhC--CCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCC
Confidence 47899999999999984 2211 11 1122 6776 89998842 354432 2222211 11122233
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|+.+..++..|+.+.. ..++..++...+.+.|++
T Consensus 231 ~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a~~L~~ 267 (382)
T TIGR02080 231 TGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIVEYLQT 267 (382)
T ss_pred CCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHHHh
Confidence 6789998888777776643 345566777777776664
No 206
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=97.25 E-value=0.00097 Score=49.97 Aligned_cols=91 Identities=15% Similarity=-0.028 Sum_probs=49.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhccCccccccccccccccceeeccCCCHHHHHH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLL 78 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~gG~~~~~~~~~~~~~~~~~T~~~~p~~~a~ 78 (119)
++|++||+++++|+++.++............++ ...|.+ ++.|.++ +++-.+-.+.. ...
T Consensus 172 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~d~~~~s~~K~l~-~p~g~g~~~~~----------------~~~ 233 (345)
T cd06450 172 DLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGI-ERVDSISVDPHKYGL-VPLGCSAVLVR----------------ALK 233 (345)
T ss_pred HHHHHhCCeEEEechhhHHHhhChhhHHHhcCc-cccCEEEEchhHhhC-CCcchHHHHHH----------------HHH
Confidence 479999999999999864311111100001121 126755 6889873 21111100111 344
Q ss_pred HHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 79 LKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 79 a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
..++++.+... +..++..++.+++++.|+++
T Consensus 234 ~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 267 (345)
T cd06450 234 LWATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD 267 (345)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556666543 45566777888888877764
No 207
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00084 Score=51.70 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=51.9
Q ss_pred hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800 3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG 74 (119)
Q Consensus 3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~ 74 (119)
|.+ +.++|+||+..=|.. .- ...... . .++++ ||||+.| .| ||.+++ .+.... ...-..|..|-+
T Consensus 174 ~~~-~~~vVvDEAY~eF~~--~~-~~~l~~-~-~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l-~~vr~p~~v~~~ 246 (356)
T COG0079 174 LPE-GGLVVIDEAYIEFSP--ES-SLELLK-Y-PPNLIVLRTFSKAFGLAGLRVGYAIANPELIAAL-NKVRPPFNVSSP 246 (356)
T ss_pred CCC-CcEEEEeCchhhcCC--ch-hhhhcc-C-CCCEEEEEecHHhhhcchhceeeccCCHHHHHHH-HHhcCCCCCCHH
Confidence 345 899999999765643 11 111112 2 23354 9999987 33 565543 232210 011123455677
Q ss_pred HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 75 KVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 75 ~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+++.++|+--+. .+..+++.+.-+++.+.|+.+
T Consensus 247 a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~ 282 (356)
T COG0079 247 ALAAAIAALRDADYLEESVERIREERERLYAALKAL 282 (356)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77777777654321 123334444445555555554
No 208
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=97.23 E-value=0.00095 Score=51.80 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=51.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE--EEchhhccC----ccccc-------ccccccccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV--TFSKKMQLG----GYFLK-------PEFVPQQAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~--t~gK~lg~g----G~~~~-------~~~~~~~~~~~~ 66 (119)
++|++||+++|+||+...|-..+.. .....+.-. .+-|+ +|||.+|.. |++.. ..+.........
T Consensus 204 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~ 282 (412)
T PTZ00433 204 RLCEELRLPLISDEIYAGMVFNGATFTSVADFDTT-VPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGM 282 (412)
T ss_pred HHHHHcCCeEEEeccccccccCCCCccchhhccCC-CceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhh
Confidence 4689999999999998765212211 111111101 12232 899998522 44442 122221111111
Q ss_pred eccCCCHHHHHHHHHHHHH-Hhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 67 NTWMGDPGKVLLLKGIIDT-IHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~-i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+++.++++..++.+.|+- .+. ++.+++++++-+.+.+.|++
T Consensus 283 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 327 (412)
T PTZ00433 283 LVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE 327 (412)
T ss_pred ccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2345667766666665542 100 12333444555555555544
No 209
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=97.23 E-value=0.0019 Score=51.35 Aligned_cols=114 Identities=18% Similarity=0.062 Sum_probs=58.9
Q ss_pred ChhhhhCCEEEEcccccc----ccC---CCcch--hhhhc-CCCCCCCEEEEc-hhhc---cCcccccc--ccccccc--
Q psy4800 1 MYEKYHGSALLIDEVQTG----GGP---CGKFW--CHEHF-DLEESPDIVTFS-KKMQ---LGGYFLKP--EFVPQQA-- 62 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG----~Gr---~G~~~--~~~~~-g~~~~pDi~t~g-K~lg---~gG~~~~~--~~~~~~~-- 62 (119)
++|++||+++|.|++|.. |.. .|... ..+.. .+-...|+++++ |-.+ .||++..+ .+....+
T Consensus 205 ~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~ 284 (460)
T PRK13238 205 EIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTL 284 (460)
T ss_pred HHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhc
Confidence 479999999999998742 111 01000 00000 000126877544 3222 26666633 3332211
Q ss_pred --cce-eeccCCCHHHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 63 --YRV-FNTWMGDPGKVLLLKG-IIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 63 --~~~-~~T~~~~p~~~a~a~a-~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
..+ +.||++++..+..|++ +|+-..+++..+...++-++|.+.|++. ..|.+
T Consensus 285 ~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~--G~~~~ 340 (460)
T PRK13238 285 CILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA--GVPIQ 340 (460)
T ss_pred ccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC--CCCeE
Confidence 122 4588998887666655 3443333444443334458888888774 45543
No 210
>PRK07337 aminotransferase; Validated
Probab=97.22 E-value=0.00091 Score=51.31 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=52.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccc-cccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~ 71 (119)
++|++|++++|+||+...+.-.+.... ..... ++++ +|+|.+| .| |++... .+.+. ...........
T Consensus 190 ~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~--~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~ 265 (388)
T PRK07337 190 EAVRARGGFTIVDEIYQGLSYDAAPVS--ALSLG--DDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICA 265 (388)
T ss_pred HHHHHCCCEEEEeccccccccCCCCcC--hhhcc--CCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhccCC
Confidence 468899999999999876633222111 11222 4554 7899985 33 555543 23221 11111112234
Q ss_pred CHHHHHHHHHHHHH--Hhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDT--IHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~--i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
++++..++.+.++- +.. .+.++.++++-+++.+.|++.
T Consensus 266 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~ 306 (388)
T PRK07337 266 SALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL 306 (388)
T ss_pred ChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555431 110 123344555555566666553
No 211
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=97.21 E-value=0.00045 Score=53.53 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=55.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccccc-eeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQAYR-VFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~~~-~~~T~~ 70 (119)
++|++||+++|+||++. .+..+.. .... .|++ .++|.+++ ||+++. + .+....... ......
T Consensus 170 ~la~~~gi~lIvD~a~a-~~~~~~p-----~~~g--aDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~ 241 (388)
T PRK07811 170 ELAHDAGAKVVVDNTFA-SPYLQQP-----LALG--ADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAV 241 (388)
T ss_pred HHHHHcCCEEEEECCCC-ccccCCc-----hhhC--CcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 47999999999999974 2222222 1222 6776 67899952 355442 2 232211111 111224
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+..++..|+.+. ...++..++...+.+.|++
T Consensus 242 ~s~~~a~l~~~~L~tl~--~R~~~~~~na~~la~~L~~ 277 (388)
T PRK07811 242 PGPFDAYLTLRGLKTLA--VRMDRHSENAEAVAEFLAG 277 (388)
T ss_pred CCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 56777666666655443 3445566777777777764
No 212
>PRK07582 cystathionine gamma-lyase; Validated
Probab=97.21 E-value=0.00047 Score=52.97 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=57.7
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--cccccccc-cceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQA-YRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~~-~~~~~T~ 69 (119)
++|+++|+++|+||++. .+|.. . ..+. +|++ ++.|.+++ +|++.. +.+.+... ......-
T Consensus 156 ~~a~~~g~~lvVD~t~~~~~~~~--p-----~~~g--~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~ 226 (366)
T PRK07582 156 AAAHAAGALLVVDNTTATPLGQR--P-----LELG--ADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGA 226 (366)
T ss_pred HHHHHcCCEEEEECCCCCccccC--c-----hhcC--CcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCC
Confidence 47899999999999973 23211 1 1222 6777 78999942 265553 22322111 1111222
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+|..+..++..|+.+. -..++.+++...+.+.|++.
T Consensus 227 ~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~L~~~ 264 (366)
T PRK07582 227 IPGPFEAWLAHRSLGTLG--LRFARQCANALAVAELLAGH 264 (366)
T ss_pred CCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHHHHhC
Confidence 457888777766666543 23466777888888887753
No 213
>PLN02409 serine--glyoxylate aminotransaminase
Probab=97.21 E-value=0.0011 Score=51.42 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=59.4
Q ss_pred hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc---cCcccc-cccccc----cc-cccee-----
Q psy4800 3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ---LGGYFL-KPEFVP----QQ-AYRVF----- 66 (119)
Q Consensus 3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg---~gG~~~-~~~~~~----~~-~~~~~----- 66 (119)
|++||+++|+|++|+ +|.. ..-.+.++ .|++ ...|+++ +-|++. ++.+.+ .. ...++
T Consensus 165 ~~~~g~~~vvD~v~s-~g~~--~id~~~~~----~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (401)
T PLN02409 165 CAQHPALLLVDGVSS-IGAL--DFRMDEWG----VDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADY 237 (401)
T ss_pred hhccCcEEEEEcccc-cCCc--cccccccC----ccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHH
Confidence 899999999999975 4321 11112122 6776 5689884 234433 222211 00 11111
Q ss_pred ------e---ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 67 ------N---TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 67 ------~---T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
. .++.|.....+..++++.+.+. +..++.+++.+++++.|+++
T Consensus 238 ~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~ 292 (401)
T PLN02409 238 LKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW 292 (401)
T ss_pred HHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 2234455677788889987653 56677888889999888765
No 214
>PRK08363 alanine aminotransferase; Validated
Probab=97.20 E-value=0.0011 Score=51.10 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=51.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---ccccc--c-cccc----cccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLK--P-EFVP----QQAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~--~-~~~~----~~~~~~~ 66 (119)
++|++||+++|+||++..+--.+..-......-. ..++ +|||.++ .| |++.. . .+.. .......
T Consensus 193 ~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~--~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~ 270 (398)
T PRK08363 193 DIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKD--VPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLAR 270 (398)
T ss_pred HHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcC--CcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4689999999999997654111221111111111 2233 8999964 34 56543 2 2211 1111111
Q ss_pred eccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+++.++++..++.+.|+-..+ .+..++++++-+++.+.|++
T Consensus 271 ~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~ 314 (398)
T PRK08363 271 IRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE 314 (398)
T ss_pred ccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344566666666555542111 12344455555666666654
No 215
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=97.19 E-value=0.0017 Score=49.44 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=50.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---ccccc--cccccccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLK--PEFVPQQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~--~~~~~~~~~~~~~T~~ 70 (119)
++|++|++++|+||+...|-..+.. -....... .+.++ +|||.+| .| |+++. ..+....... ...+.
T Consensus 168 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~-~~~~~ 244 (354)
T PRK06358 168 DKCEKRNIYLIIDEAFMDFLEENETISMINYLEN--FKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQM-REPWS 244 (354)
T ss_pred HHHHhcCCEEEEeCcccccCCCccchhHHHhccC--CCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHh-CCCCc
Confidence 3689999999999998765222211 11111221 13333 8999996 22 55543 2332211100 11334
Q ss_pred CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+.++..++.++|+--+. ++..+.+++.-+++.+.|++
T Consensus 245 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 283 (354)
T PRK06358 245 INTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE 283 (354)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555531000 12233344444555555554
No 216
>PRK05957 aspartate aminotransferase; Provisional
Probab=97.18 E-value=0.0016 Score=50.17 Aligned_cols=19 Identities=21% Similarity=-0.045 Sum_probs=16.4
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|+||+...+
T Consensus 187 ~~a~~~~~~li~De~y~~~ 205 (389)
T PRK05957 187 QICAEHGIYHISDEAYEYF 205 (389)
T ss_pred HHHHHcCcEEEEeccchhc
Confidence 4799999999999998654
No 217
>PRK12414 putative aminotransferase; Provisional
Probab=97.17 E-value=0.00067 Score=52.11 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=52.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcch--hhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccc-cccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW--CHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~--~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~ 69 (119)
++|++|++++|+||++.-+--.+... .....+.. ..++ +|||.+| .| |++..+ .+... .......++
T Consensus 189 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~--~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~~ 266 (384)
T PRK12414 189 QLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELA--ERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVF 266 (384)
T ss_pred HHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCcc--CcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhheec
Confidence 36899999999999976431112111 11111211 1222 8999996 44 565543 23221 111112344
Q ss_pred CCCHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+.++..++.+.|+--. ..+..+.++++-+.+.+.|++.
T Consensus 267 ~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 307 (384)
T PRK12414 267 SADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS 307 (384)
T ss_pred CCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555666555555443100 0123444556666666666653
No 218
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00061 Score=53.05 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=61.8
Q ss_pred ChhhhhCCEEEEccccccccCCCc-c-hhhhhcCC-CCCCCEEEEchhhc-cC---cccccc--ccccccc-cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK-F-WCHEHFDL-EESPDIVTFSKKMQ-LG---GYFLKP--EFVPQQA-YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~-~-~~~~~~g~-~~~pDi~t~gK~lg-~g---G~~~~~--~~~~~~~-~~~~~T~~ 70 (119)
++|++||+++|.||+..++--.|. . ...+..+. +...-+-.|||..+ +| |+++.. .+.+... .....+++
T Consensus 190 ~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~ 269 (393)
T COG0436 190 ELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC 269 (393)
T ss_pred HHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccC
Confidence 479999999999999998744453 1 11111111 00012237999987 33 666644 3443222 22234546
Q ss_pred CCHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN----ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~----~~~~~~~~~~g~~l~~~L~~l 109 (119)
.+.++-.++.++|+--.+ +..++..+++-+.+.+.|.++
T Consensus 270 ~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~ 312 (393)
T COG0436 270 APTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEI 312 (393)
T ss_pred CCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777764321 112234556666666777654
No 219
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=97.14 E-value=0.00044 Score=53.91 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=57.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-cccc-eeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-QAYR-VFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~~~~-~~~T~~ 70 (119)
++|++||+++|+||++. .+-..... ..| .|++ .+.|.+++ ||+++.+ ..... .... ......
T Consensus 179 ~la~~~g~~vivD~a~a-~~~~~~~~---~~g----aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~ 250 (403)
T PRK07810 179 ELAHAAGAKVVLDNVFA-TPLLQRGL---PLG----ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA 250 (403)
T ss_pred HHHHHcCCEEEEECCCC-ccccCChh---hcC----CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence 47999999999999974 21111111 123 6776 68898852 4666533 22211 1111 111225
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..++.++..|+.+. ...++-.++..++.+.|++
T Consensus 251 ~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~L~~ 286 (403)
T PRK07810 251 LSAFNAWVLLKGLETLA--LRVRHSNASALRIAEFLEG 286 (403)
T ss_pred CCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHhc
Confidence 78898888888887764 3445556666666666654
No 220
>PRK06234 methionine gamma-lyase; Provisional
Probab=97.12 E-value=0.0008 Score=52.33 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=58.5
Q ss_pred Chhhhh--CCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc---cceee
Q psy4800 1 MYEKYH--GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA---YRVFN 67 (119)
Q Consensus 1 ~l~~~~--~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~---~~~~~ 67 (119)
++|++| |+++|+||++. .+..+.. .+.. .|++ .++|.+++ ||++..+ .+....+ .....
T Consensus 173 ~la~~~~~~i~livDea~~-~~~~~~~-----l~~g--~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~ 244 (400)
T PRK06234 173 NIAHENNKECLVFVDNTFC-TPYIQRP-----LQLG--ADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMT 244 (400)
T ss_pred HHHHhcCCCCEEEEECCCC-chhcCCc-----hhhC--CcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhc
Confidence 478887 99999999974 2222221 1222 6776 78899852 4766543 3322111 11112
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
+...+|..+..++..|+.+. ...++.+++.+++.+.|++
T Consensus 245 g~~l~p~~a~l~~~~l~tl~--~r~~~~~~na~~~a~~L~~ 283 (400)
T PRK06234 245 GSVIGPFEAFLIIRGMKTLQ--IRMEKHCKNAMKVAKFLES 283 (400)
T ss_pred CCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHc
Confidence 34678998888877776553 3455666777777777654
No 221
>PRK05968 hypothetical protein; Provisional
Probab=97.09 E-value=0.00067 Score=52.58 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=55.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc----cccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ----QAYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~----~~~~~~~T 68 (119)
++|++||+++|+|+++.. +...... ..| .|++ ++.|.+++ ||++..+ .+... .....+
T Consensus 171 ~la~~~gi~vivD~a~a~-~~~~~p~---~~g----~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g-- 240 (389)
T PRK05968 171 ALAKRHGVVTMIDNSWAS-PVFQRPI---TLG----VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLG-- 240 (389)
T ss_pred HHHHHcCCEEEEECCCcc-hhccCch---hcC----CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCC--
Confidence 478999999999999742 1111111 123 5766 78998852 4655532 22221 111122
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
...+|..++..+..|+.+ +...++-.++.+++.+.|++
T Consensus 241 ~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L~~ 278 (389)
T PRK05968 241 AKLSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRLKA 278 (389)
T ss_pred CCCChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHh
Confidence 256788888777776665 33445555667777777765
No 222
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=97.09 E-value=0.0012 Score=50.68 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=59.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCcc-cccc-ccc-------ccc--c-
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGY-FLKP-EFV-------PQQ--A- 62 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~-~~~~-~~~-------~~~--~- 62 (119)
++|++||+++|.|++|+ +|..-.+ ...|-- -|+.+|| |.++ .||. +..+ .+. +.. +
T Consensus 140 ~la~~~~i~vIeD~a~a-~g~~~~~---~~~g~~--~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~ 213 (375)
T PRK11706 140 ALAKKHNLFVVEDAAQG-VMSTYKG---RALGTI--GHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRS 213 (375)
T ss_pred HHHHHcCCEEEEECccc-cccccCC---eeeecC--cCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcc
Confidence 47999999999999975 4432100 112222 5888888 9994 3454 4322 221 110 0
Q ss_pred ------------cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 63 ------------YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 63 ------------~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
...+.++-.+.+.++.+++-|+.+++ ..++-+++.+++++.|..+
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~--~~~~R~~~~~~~~~~L~~~ 270 (375)
T PRK11706 214 QFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADR--INQRRLALWQRYYDALAPL 270 (375)
T ss_pred hhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCC
Confidence 00123444567788888888877743 4455667777777777665
No 223
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=97.09 E-value=0.00064 Score=52.19 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=55.1
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc--cccccc-ccceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP--EFVPQQ-AYRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~--~~~~~~-~~~~~~T~ 69 (119)
++|++||+++|+||++. ++ ..... ..+ .|++ +++|.+++ +|++... .+.+.. ......+.
T Consensus 160 ~la~~~g~~lIvD~t~~~~~--~~~p~---~~g----~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~ 230 (366)
T PRK08247 160 KIAKKHGLLLIVDNTFYTPV--LQRPL---EEG----ADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGA 230 (366)
T ss_pred HHHHHcCCEEEEECCCcccc--ccCch---hcC----CcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCC
Confidence 47999999999999973 22 11111 112 5766 79999952 4555432 232211 11112233
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|..+..+...|+.+. ...++.+++.+.+.+.|++
T Consensus 231 ~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~~L~~ 267 (366)
T PRK08247 231 VLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAAFLNE 267 (366)
T ss_pred CCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 567877777666666443 2334456676777777765
No 224
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.08 E-value=0.0013 Score=51.77 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=55.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cccc--cc-ccc------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFV--PQ-QAY------ 63 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~--~~-~~~------ 63 (119)
++|++||+++|+||++. .+.... ..... +|++ ++.|.+++ ||+++. +.+. .. ...
T Consensus 167 ~la~~~~i~vVvD~a~a-~~~~~~-----p~~~g--aDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~ 238 (425)
T PRK06084 167 DAAHRHGVPLIVDNTVA-TPVLCR-----PFEHG--ADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTP 238 (425)
T ss_pred HHHHHcCCEEEEECCCc-ccccCC-----hhhcC--CCEEEECchhcccccccceeEEEEeCCccchhhccccccccccC
Confidence 47999999999999975 222221 12222 7877 78999852 455543 2110 00 000
Q ss_pred --------------------------ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 64 --------------------------RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 64 --------------------------~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
....-...+|..+...+..|+.+. ...++-+++...+.+.|++
T Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~--~R~~~~~~na~~la~~L~~ 307 (425)
T PRK06084 239 DPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLA--LRMERHTENALKVARYLQQ 307 (425)
T ss_pred CcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 001112467777777766666653 3455666777777777765
No 225
>PLN02187 rooty/superroot1
Probab=97.05 E-value=0.0025 Score=50.47 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=16.4
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||++..+
T Consensus 231 ~~a~~~~i~iI~DE~Y~~l 249 (462)
T PLN02187 231 ETARKLGIMVISDEVYDRT 249 (462)
T ss_pred HHHHHCCCEEEEecccccc
Confidence 4789999999999998764
No 226
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=97.04 E-value=0.0028 Score=48.99 Aligned_cols=106 Identities=8% Similarity=0.053 Sum_probs=51.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcch-hhhhcCCCCCCCEE---EEchhhccC----ccccc--c-c-----cccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLEESPDIV---TFSKKMQLG----GYFLK--P-E-----FVPQQAYR 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pDi~---t~gK~lg~g----G~~~~--~-~-----~~~~~~~~ 64 (119)
++|++||+++|+||++..|-..+..+ ... .+...+.++ +|+|.++.. |+++. . . +.......
T Consensus 196 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~ 273 (403)
T TIGR01265 196 EVARKLGIPIIADEIYGHMVFGDAPFIPMA--SFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNL 273 (403)
T ss_pred HHHHHCCCEEEEEccccccccCCCCccchh--hhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHH
Confidence 47899999999999987663233211 111 112112333 899985422 44432 1 1 11111111
Q ss_pred eeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHh
Q psy4800 65 VFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 65 ~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~ 108 (119)
...+.+.++++-.++.+.|+--.+ ++.+++++++-+++.+.|+.
T Consensus 274 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (403)
T TIGR01265 274 LQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD 320 (403)
T ss_pred hhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112334566666666566542111 12334455555556666654
No 227
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=97.03 E-value=0.0014 Score=50.27 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=16.3
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||+..-|
T Consensus 192 ~~a~~~~~~ii~De~Y~~~ 210 (388)
T PRK07366 192 AFCQQHDLVLVHDFPYVDL 210 (388)
T ss_pred HHHHHcCeEEEEecchhhc
Confidence 3789999999999998654
No 228
>PRK06207 aspartate aminotransferase; Provisional
Probab=97.00 E-value=0.003 Score=48.99 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=16.3
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||+..-+
T Consensus 205 ~~a~~~~~~iI~De~Y~~~ 223 (405)
T PRK06207 205 ALARRYGATVIVDQLYSRL 223 (405)
T ss_pred HHHHHcCCEEEEecccccc
Confidence 4689999999999998754
No 229
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=96.99 E-value=0.0018 Score=50.18 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=16.5
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||++..|
T Consensus 203 ~~a~~~~~~iI~De~Y~~~ 221 (409)
T PRK07590 203 DYAKENGSLILFDAAYEAF 221 (409)
T ss_pred HHHHHcCeEEEEEccchhh
Confidence 4789999999999998755
No 230
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.99 E-value=0.0027 Score=49.85 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=26.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg 47 (119)
++|++||+++|+||+|.. +. ........ +|++ .+.|.++
T Consensus 172 ~la~~~gi~livD~a~a~----~~--~~~pl~~g--aDivv~S~tK~lg 212 (427)
T PRK05994 172 EVAHRAGLPLIVDNTLAS----PY--LIRPIEHG--ADIVVHSLTKFLG 212 (427)
T ss_pred HHHHHcCCEEEEECCccc----cc--cCCccccC--CcEEEEcCccccC
Confidence 479999999999999851 11 11222333 8987 5889885
No 231
>PLN02368 alanine transaminase
Probab=96.99 E-value=0.0014 Score=51.30 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=54.8
Q ss_pred ChhhhhCCEEEEccccccccCCC--cc-hhhhhc-CCC----CCCCEE---EEchhh-c-cC---cccc----ccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCG--KF-WCHEHF-DLE----ESPDIV---TFSKKM-Q-LG---GYFL----KPEFVPQ 60 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G--~~-~~~~~~-g~~----~~pDi~---t~gK~l-g-~g---G~~~----~~~~~~~ 60 (119)
++|++||+++|.||+..-+--.+ .. ...+.. ++. ..+.++ +|||++ + .| ||+. ...+...
T Consensus 237 ~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~ 316 (407)
T PLN02368 237 KFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEE 316 (407)
T ss_pred HHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHH
Confidence 47999999999999986541112 11 111110 111 112344 789997 4 22 5654 2233321
Q ss_pred cccceeeccCCCHHHHHHHHHHHHH-----------Hhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 61 QAYRVFNTWMGDPGKVLLLKGIIDT-----------IHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 61 ~~~~~~~T~~~~p~~~a~a~a~l~~-----------i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
.......++..|.++-.++.++|+- .++ .++.+..+++-+++.+.|+++
T Consensus 317 ~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~ 377 (407)
T PLN02368 317 IYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC 377 (407)
T ss_pred HHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111112345566666667666641 111 123445566666666766654
No 232
>PRK08636 aspartate aminotransferase; Provisional
Probab=96.98 E-value=0.0018 Score=50.03 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=16.3
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||+...+
T Consensus 202 ~~a~~~~~~II~De~Y~~l 220 (403)
T PRK08636 202 ALAKKERFYIISDIAYADI 220 (403)
T ss_pred HHHHHcCcEEEEeccchhh
Confidence 4799999999999997654
No 233
>PRK09105 putative aminotransferase; Provisional
Probab=96.97 E-value=0.0031 Score=48.42 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=49.5
Q ss_pred hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL 77 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a 77 (119)
+++++|+||++..|+. +. ...+..+.. ++++ +|||.+| .| |+++.+ .+.+..... .++..+..+..
T Consensus 196 ~~~~lIvDEaY~~f~~-~~-s~~~~~~~~--~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~--~~~~~~~~~~~ 269 (370)
T PRK09105 196 AGSVLLVDEAYIHFSD-AP-SVVDLVAQR--KDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF--GHNPLPVPAAA 269 (370)
T ss_pred CCcEEEEECchHHhcc-Cc-chHHHHhhC--CCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc--CCCCcCHHHHH
Confidence 5899999999865632 11 111111212 5544 8999997 45 666643 232211111 22234555555
Q ss_pred HHHHHHHHHhhhcH----HHHHHHHHHHHHHHHHhh
Q psy4800 78 LLKGIIDTIHNENL----LDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 78 ~a~a~l~~i~~~~~----~~~~~~~g~~l~~~L~~l 109 (119)
++.++|+ ++++ .++++++-+++.+.|+++
T Consensus 270 aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~ 302 (370)
T PRK09105 270 AGLASLR---DPKLVPQRRAENAAVREDTIAWLKKK 302 (370)
T ss_pred HHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5555553 2333 344555556666666653
No 234
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0056 Score=47.72 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc---cCcccc-ccc----ccccc-ccce----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ---LGGYFL-KPE----FVPQQ-AYRV---- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg---~gG~~~-~~~----~~~~~-~~~~---- 65 (119)
++|++||+++|+|=| +.+| |...-.+.+| .|+++ -=|+|+ +=+++. ++. +.... +.++
T Consensus 155 ~~~k~~g~l~iVDaV-sS~G--g~~~~vd~wg----iDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~ 227 (383)
T COG0075 155 KAAKEHGALLIVDAV-SSLG--GEPLKVDEWG----IDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLK 227 (383)
T ss_pred HHHHHcCCEEEEEec-ccCC--CcccchhhcC----ccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHH
Confidence 478999999999998 6675 3344455666 46664 448884 112222 111 11000 0000
Q ss_pred ---------ee-ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 66 ---------FN-TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ---------~~-T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
.. -|..+....-+-.++|+.+.++ +..+|-+++++.+++.++++
T Consensus 228 ~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al 284 (383)
T COG0075 228 KWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL 284 (383)
T ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 2223334556667899998876 45667788999999999876
No 235
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=96.95 E-value=0.0025 Score=49.10 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=16.2
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||+..-+
T Consensus 193 ~~a~~~~~~ii~De~y~~~ 211 (396)
T PRK09147 193 ALSDRYGFVIASDECYSEI 211 (396)
T ss_pred HHHHHcCeEEEeecccccc
Confidence 4789999999999997644
No 236
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=96.95 E-value=0.0041 Score=47.72 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=51.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc--cCcccccc-ccccccccc---eeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ--LGGYFLKP-EFVPQQAYR---VFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg--~gG~~~~~-~~~~~~~~~---~~~T~~~~ 72 (119)
++|++||+++|+|++|. . ... ....+| .|++++ .|.++ .+|++..+ .+....+.. ....+...
T Consensus 173 ~~a~~~gi~vivD~a~~-~--~~~--~~~~~g----~D~~~~S~~K~l~gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~ 243 (363)
T TIGR01437 173 QVAQEHNLPLIVDAAAE-E--DLQ--KYYRLG----ADLVIYSGAKAIEGPTSGLVLGKKKYIEWVKLQSKGIGRAMKVG 243 (363)
T ss_pred HHHHHcCCeEEEECCCC-C--chH--HHHHcC----CCEEEEeCCcccCCCceEEEEEcHHHHHHHHhccCCCcceeccC
Confidence 47999999999999985 1 111 111123 688754 59874 35665532 222211100 00011111
Q ss_pred HHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 73 PGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
...++...++++.+.+ .+..++.+++.++++++|+++
T Consensus 244 ~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i 282 (363)
T TIGR01437 244 KENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTL 282 (363)
T ss_pred HHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcC
Confidence 1234555556766653 233334444555788888765
No 237
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=96.92 E-value=0.0031 Score=49.19 Aligned_cols=80 Identities=8% Similarity=-0.122 Sum_probs=40.6
Q ss_pred Chhhhh-CCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhccC---cccccc-cccccc-ccceeeccCC
Q psy4800 1 MYEKYH-GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQLG---GYFLKP-EFVPQQ-AYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~-~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg~g---G~~~~~-~~~~~~-~~~~~~T~~~ 71 (119)
++|++| ++++|.||+..-|-..+.. ...... .+.++ +|||.++.| ||++.. .+.... ......++..
T Consensus 239 ~la~~~~~~~ii~De~Y~~~~~~~~~---~~~~~~-~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~~~~ 314 (431)
T PRK15481 239 NLLARYPQVLVIIDDHFALLSSSPYH---SVIPQT-TQRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGTQWV 314 (431)
T ss_pred HHHHhcCCceEEecCchhhhccCCCC---CCCcCC-CCCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccccCC
Confidence 368899 9999999997655211110 001111 13333 899999622 444432 222211 1111223345
Q ss_pred CHHHHHHHHHHHH
Q psy4800 72 DPGKVLLLKGIID 84 (119)
Q Consensus 72 ~p~~~a~a~a~l~ 84 (119)
++++..++.+.|+
T Consensus 315 s~~~q~a~~~~l~ 327 (431)
T PRK15481 315 SHLLQDLVYACLT 327 (431)
T ss_pred CHHHHHHHHHHHh
Confidence 6676666666654
No 238
>KOG2862|consensus
Probab=96.90 E-value=0.0073 Score=46.04 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=61.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccc--ccc-----ccc-----------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFL--KPE-----FVP----------- 59 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~--~~~-----~~~----------- 59 (119)
++|++|+++|++|-|- -+| |.-|.++.+|+ |+. --=|+|+ --|..+ .+. +.+
T Consensus 167 ~lc~k~~~lllVD~Va-Slg--gt~F~mDewgV----DvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd 239 (385)
T KOG2862|consen 167 ELCHKHEALLLVDTVA-SLG--GTEFEMDEWGV----DVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFD 239 (385)
T ss_pred HHhhcCCeEEEEechh-hcC--Cccceehhhcc----cEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEe
Confidence 5899999999999994 454 45677777885 555 4558885 123322 111 110
Q ss_pred -----------ccccceeeccCCCHHH-HHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhhh
Q psy4800 60 -----------QQAYRVFNTWMGDPGK-VLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 60 -----------~~~~~~~~T~~~~p~~-~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l~ 110 (119)
..+..+++| .|+. .-.-+++|+.|-++. ..++-++++++++..|+++.
T Consensus 240 ~~~~~~~wgc~~e~~~yhhT---~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~G 302 (385)
T KOG2862|consen 240 ILRLGNFWGCDGEPRAYHHT---PPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALG 302 (385)
T ss_pred HHhhcchhccCCcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 112223334 3443 334567888887654 44567899999999999863
No 239
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0044 Score=48.00 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=60.9
Q ss_pred ChhhhhCCEEEEccccccccCCC-cchhhhhcCCCC-CCC--EE--EEchhhccCccccccccccc--------ccccee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCG-KFWCHEHFDLEE-SPD--IV--TFSKKMQLGGYFLKPEFVPQ--------QAYRVF 66 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G-~~~~~~~~g~~~-~pD--i~--t~gK~lg~gG~~~~~~~~~~--------~~~~~~ 66 (119)
+||.+||+++|.||+|.=+=-.| +...+ ..+.. ..| |. .-+|+....|.-.+..+... .+..-.
T Consensus 185 elc~kh~v~VISDEIHaDlv~~g~~h~~~--a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~ 262 (388)
T COG1168 185 ELCLRHGVRVISDEIHADLVLGGHKHIPF--ASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRN 262 (388)
T ss_pred HHHHHcCCEEEeecccccccccCCCccch--hhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHh
Confidence 58999999999999997652334 22111 22320 012 22 33688754444333222111 111112
Q ss_pred eccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
...+.|.+++.+..++.+.=+. +++.+-++.+-+++.+.+++.
T Consensus 263 ~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~ 307 (388)
T COG1168 263 GLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH 307 (388)
T ss_pred cCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2336788888888888765433 245566778888888888765
No 240
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=96.87 E-value=0.0017 Score=50.77 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=56.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--ccccccc-ccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQ-AYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~-~~~~~~T~~ 70 (119)
++|++||+++|+||++..-... .. .... .|++ ...|.+++ +|+++. +.+.+.. .......+.
T Consensus 169 ~la~~~gi~vIvD~a~a~~~~~-~p-----l~~g--aDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~ 240 (405)
T PRK08776 169 EAAHKVGALTVVDNTFLSPALQ-KP-----LEFG--ADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT 240 (405)
T ss_pred HHHHHcCCEEEEECCCcccccC-Cc-----cccc--CCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 4789999999999998521111 11 1122 6777 56788841 344432 2232211 111112234
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|+.+...+..++.++ .+.++..++...+.+.|++
T Consensus 241 ~s~~~a~l~~~gl~tl~--~r~~~~~~na~~la~~L~~ 276 (405)
T PRK08776 241 GSPFDAFLTLRGLRTLD--ARLRVHQENADAIAALLDG 276 (405)
T ss_pred CCHHHHHHHHhhhCcHH--HHHHHHHHHHHHHHHHHHc
Confidence 68999888887776663 3556667777777776664
No 241
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=96.86 E-value=0.0065 Score=46.94 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=59.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc---cCccccc--cccc-------cc--cc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ---LGGYFLK--PEFV-------PQ--QA 62 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg---~gG~~~~--~~~~-------~~--~~ 62 (119)
++|++||+++|.|++|+ +|.. +.-...|.. -|+.+|| |.+. -||+++. +++. +. ..
T Consensus 140 ~la~~~~i~vIeDaa~~-~g~~---~~~~~~g~~--~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~ 213 (376)
T TIGR02379 140 ALANKHQLFVIEDAAQG-VMST---YKGRALGSI--GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNR 213 (376)
T ss_pred HHHHHCCCEEEEECccc-cCCc---cCCcccCCC--CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCC
Confidence 47999999999999975 4321 111123332 5888898 8774 2565542 1111 10 00
Q ss_pred ---------c----ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 63 ---------Y----RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 63 ---------~----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
. ..+..|-.+.+.++.+++.|+.+.+ ..++-+++.++..+.|..+
T Consensus 214 ~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~~L~~~ 271 (376)
T TIGR02379 214 SQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQDALKPL 271 (376)
T ss_pred ccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhccC
Confidence 0 0233445667788888888888754 4444556666667777654
No 242
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=96.85 E-value=0.0043 Score=48.96 Aligned_cols=41 Identities=5% Similarity=-0.061 Sum_probs=30.8
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
..+-.+.+.+|.++.-|+.+++ ..++-+++.+++.+.|..+
T Consensus 288 ~n~rmsel~AAig~~qL~~l~~--~~~~R~~~a~~y~~~L~~~ 328 (438)
T PRK15407 288 YNLKITDMQAAIGLAQLEKLPG--FIEARKANFAYLKEGLASL 328 (438)
T ss_pred cccCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC
Confidence 3456788999999999988854 5566677777888888654
No 243
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=96.82 E-value=0.0011 Score=50.97 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=57.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccccce-eeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQAYRV-FNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~~~~-~~T~~ 70 (119)
++|+++|+++|+||++.. +.. ....+.- .|++ .+.|.+++ ||.++. + .+.......+ .....
T Consensus 160 ~la~~~gi~vvvD~t~~~----~~~--~~pl~~g--aDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~ 231 (364)
T PRK07269 160 KLAHAKGAKVIVDNTFYS----PIY--QRPIELG--ADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAV 231 (364)
T ss_pred HHHHHcCCEEEEECCCcc----ccc--CCchhhC--CcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCC
Confidence 478999999999999521 111 1222323 7887 46688852 566553 2 2322111111 11235
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+..++..|+.+. ...++-+++...+.+.|++
T Consensus 232 ~s~~~a~l~~~~L~tL~--~r~~~~~~na~~~a~~L~~ 267 (364)
T PRK07269 232 LSPFDSYLLMRGLKTLS--LRMERSTANAQEVVAFLKK 267 (364)
T ss_pred CCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 78999888888877663 3445556777777666653
No 244
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=96.82 E-value=0.0031 Score=47.91 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800 3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG 74 (119)
Q Consensus 3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~ 74 (119)
|++ ++++|+||++.-|-..... .....- .+.++ +|+|++| .| ||...+ .+.+.... ....|..+.+
T Consensus 174 ~~~-~~~vivDEay~~f~~~~s~--~~~~~~--~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~-~~~~~~v~~~ 247 (351)
T PRK01688 174 TRG-KAIVVADEAYIEFCPQASL--AGWLAE--YPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLK-VIAPYPLSTP 247 (351)
T ss_pred CCC-CcEEEEECchhhcCCCCCh--HHHHhh--CCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHh-ccCCCCCCHH
Confidence 444 6899999998656211111 111111 14543 8999997 44 665543 23221100 1112344555
Q ss_pred HHHHHHHHHHHH--hh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 75 KVLLLKGIIDTI--HN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 75 ~~a~a~a~l~~i--~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+++.++|+-- +. .+..+.+.+.-+++.+.|+++
T Consensus 248 ~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 285 (351)
T PRK01688 248 VADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEI 285 (351)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555665655421 00 112233444445666666554
No 245
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=96.81 E-value=0.0029 Score=48.65 Aligned_cols=108 Identities=10% Similarity=0.010 Sum_probs=50.9
Q ss_pred ChhhhhCCEEEEccccccccCCC--cc---h-hhhhcCCCCCCCEE---EEchhhc-cC---ccccccc-cccc-cccce
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCG--KF---W-CHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKPE-FVPQ-QAYRV 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G--~~---~-~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~~-~~~~-~~~~~ 65 (119)
++|++|++++|.||+..-+-..+ .. . .....+....+.++ +|||.++ .| |+++.+. +... .....
T Consensus 192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~ 271 (393)
T TIGR03538 192 ELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRT 271 (393)
T ss_pred HHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHH
Confidence 46899999999999986542111 11 1 11111111112233 8999764 34 5655432 3221 11111
Q ss_pred eeccCCCHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHh
Q psy4800 66 FNTWMGDPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 66 ~~T~~~~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..++..+++...++.+.+..-+ -.+..+.++++-+.+.+.|++
T Consensus 272 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 315 (393)
T TIGR03538 272 YHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQ 315 (393)
T ss_pred hhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233456666666666653100 012233344444555555554
No 246
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=96.81 E-value=0.0032 Score=47.69 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=49.8
Q ss_pred hhCCEEEEccccccccCCCcchh--hhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800 5 YHGSALLIDEVQTGGGPCGKFWC--HEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL 77 (119)
Q Consensus 5 ~~~~lli~DEv~tG~Gr~G~~~~--~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a 77 (119)
++++++|.||+..-|. +.... .+.+.- ..-+-+|||.++ .| |+++.+ .+........ .+++.++++..
T Consensus 165 ~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~--vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~-~~~~~~~~~q~ 239 (335)
T PRK14808 165 KTGAFVALDEAYYEFH--GESYVDLLKKYEN--LAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR-LPFNVSYVSQM 239 (335)
T ss_pred hcCCEEEEECchhhhc--CCchHHHHHhCCC--EEEEEechhhccCcccceEEEEeCHHHHHHHHHhc-CCCCCCHHHHH
Confidence 5799999999987662 21111 111110 022338999997 56 777653 2322110011 12344566666
Q ss_pred HHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 78 LLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 78 ~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
++.++++..+. ++..+.+++.-+++.+.|+++
T Consensus 240 a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 272 (335)
T PRK14808 240 FAKVALDHREIFEERTKFIVEERERMKSALREM 272 (335)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 66666653221 122333444445566666553
No 247
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=96.78 E-value=0.0062 Score=46.30 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=39.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchh-hhhcCCCCCCCEE---EEchhhccC----cccccc-ccccccccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEESPDIV---TFSKKMQLG----GYFLKP-EFVPQQAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~pDi~---t~gK~lg~g----G~~~~~-~~~~~~~~~~~~T~~~ 71 (119)
++++++++ +|+||+...|-..+..-. .....- .+.++ +|||.++.. |+++.. .+...... ....+..
T Consensus 172 ~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~--~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~-~~~~~~~ 247 (360)
T PRK07392 172 PLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAE--YPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQ-WRDPWPV 247 (360)
T ss_pred HHHHHCCE-EEEECchhhhccCccccchHHHhhc--CCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHh-hCCCCCC
Confidence 36788885 677999877633332101 111111 13333 899999623 344432 22221110 1123456
Q ss_pred CHHHHHHHHHHHH
Q psy4800 72 DPGKVLLLKGIID 84 (119)
Q Consensus 72 ~p~~~a~a~a~l~ 84 (119)
++++..++.+.|+
T Consensus 248 s~~~q~~~~~~l~ 260 (360)
T PRK07392 248 NGLAAAAAIAALA 260 (360)
T ss_pred CHHHHHHHHHHhc
Confidence 7777777666654
No 248
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=96.76 E-value=0.0028 Score=48.58 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=48.2
Q ss_pred hhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD 72 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~ 72 (119)
+|++++ ++|+||++..|-..+.. -...... ..+.++ +|||.+| .| ||++.+ .+.+.... ...++..|
T Consensus 179 ~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~--~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~-~~~~~~~~ 254 (366)
T PRK01533 179 GISENT-LIVIDEAYYEYVTAKDFPETLPLLE--KHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNV-VRLPFNVS 254 (366)
T ss_pred hCCCCC-EEEEEccHHHhhccccCcchhHHhc--cCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHH-hcCCCCcC
Confidence 466665 67789998655211110 0111111 113333 8999996 33 555543 23221111 11345677
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
+++..++.++|+ ++++.+++++.-+.-++++.+
T Consensus 255 ~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~ 287 (366)
T PRK01533 255 SLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYES 287 (366)
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH
Confidence 888787777773 344444443333333333333
No 249
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=96.74 E-value=0.0049 Score=49.02 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=30.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcc---hh------hhhcCCCCCCCEEEEc--hhhc--cCccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKF---WC------HEHFDLEESPDIVTFS--KKMQ--LGGYFLK 54 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~---~~------~~~~g~~~~pDi~t~g--K~lg--~gG~~~~ 54 (119)
++|++||+++|+|-. .|..+.. +. .+.... .+|++++| |.+| .+|++..
T Consensus 239 ~la~~~g~~vivD~~---sG~l~~~~~~gl~~~p~~~~~~~~--GaDiv~fSg~K~LgGp~~G~i~g 300 (454)
T TIGR00474 239 ALGREHGLPVMEDLG---SGSLVDLSRYGLPDEPTVQEVIAA--GVDLVTFSGDKLLGGPQAGIIVG 300 (454)
T ss_pred HHHHHcCCeEEEECC---CcccccchhccCCCCcccccHhHc--CCCEEEecCccccCCCeEEEEEE
Confidence 479999999999953 3333221 11 111112 38999999 9995 3566543
No 250
>PRK04311 selenocysteine synthase; Provisional
Probab=96.73 E-value=0.0052 Score=49.01 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=30.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcch------hhhhcCCCCCCCEEEEc--hhhc--cCccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFW------CHEHFDLEESPDIVTFS--KKMQ--LGGYFLK 54 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~------~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~ 54 (119)
++|++||+++|+|..+.-++..+.++ ..+.... .+|++++| |.+| .+|++..
T Consensus 244 ~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~--GaDiv~fSg~K~LgGp~~G~i~g 305 (464)
T PRK04311 244 ALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAA--GVDLVTFSGDKLLGGPQAGIIVG 305 (464)
T ss_pred HHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhc--CCcEEEecCcccccCCceEEEEE
Confidence 47999999999999521122222111 1111112 28999988 9985 3565543
No 251
>PRK06107 aspartate aminotransferase; Provisional
Probab=96.73 E-value=0.0061 Score=47.12 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=51.0
Q ss_pred Chhhhh-CCEEEEccccccccCCCcc-hhhhhc--CCCCCCCEE---EEchhhc-cC---cccccc-cccccc-ccceee
Q psy4800 1 MYEKYH-GSALLIDEVQTGGGPCGKF-WCHEHF--DLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFN 67 (119)
Q Consensus 1 ~l~~~~-~~lli~DEv~tG~Gr~G~~-~~~~~~--g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~ 67 (119)
++|++| ++++|+||+...+.-.+.. ...... +.. ..++ +|+|.++ .| |++... .+.+.. ......
T Consensus 193 ~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~--~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~ 270 (402)
T PRK06107 193 DVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELR--DRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQS 270 (402)
T ss_pred HHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCcc--CCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhc
Confidence 368898 9999999997644112211 111111 111 2344 6799996 33 454432 232211 111122
Q ss_pred ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~ 108 (119)
+...++++..++...|+--+. ++..++++++-+.+.+.|++
T Consensus 271 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 313 (402)
T PRK06107 271 SSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA 313 (402)
T ss_pred ccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335566666666666631000 12233445555555666654
No 252
>PRK08354 putative aminotransferase; Provisional
Probab=96.73 E-value=0.0061 Score=45.55 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=29.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---ccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLK 54 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~ 54 (119)
++|++||+++|.||+...|- .+.. ... .+.++ +|||.++ .| |+++.
T Consensus 144 ~~a~~~~~~li~De~y~~f~-~~~~------~~~-~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 144 DAVEDRNALLILDEAFIDFV-KKPE------SPE-GENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred HHhhhcCcEEEEeCcchhcc-cccc------ccC-CCcEEEEeccHhhcCCccceeeeeee
Confidence 36889999999999987762 2211 111 13333 8999996 44 56554
No 253
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=96.72 E-value=0.0018 Score=50.01 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=51.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-cccccccc-ce-eecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQAY-RV-FNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~~-~~-~~T~ 69 (119)
++|++||+++|+|+++. .+-..... .+| +|++ ...|.+++ +|++.. + .+...... .. ..+
T Consensus 155 ~la~~~g~~vivD~a~~-~~~~~~~l---~~g----~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~- 225 (378)
T TIGR01329 155 EMAHAQNALVVVDNTMM-SPLLCNPL---ELG----ADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGS- 225 (378)
T ss_pred HHHHHcCCEEEEECCCc-ccccCChh---hcC----CcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCC-
Confidence 47999999999999973 21111111 123 6876 67898852 455532 2 22121111 11 222
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL 107 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~ 107 (119)
..+|..+...+..++.+. ...++-.++...+.+.|+
T Consensus 226 ~~~~~~a~l~~~~l~tl~--~R~e~~~~na~~la~~L~ 261 (378)
T TIGR01329 226 GLAPFDCWLLLRGIKTLA--IRIEKQQENARAIAMFLS 261 (378)
T ss_pred cCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHH
Confidence 466776655444443332 344555666666666665
No 254
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=96.70 E-value=0.0031 Score=48.57 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=56.7
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccccc--cccc-------cc-----
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP--EFVP-------QQ----- 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~--~~~~-------~~----- 61 (119)
++|++||+++|+|++|+ |.-..|+. .+-. ..|+..|+ |.+. .||+++.. .+.. ..
T Consensus 142 ~~a~~~gi~vi~D~a~a~g~~~~~~~-----~g~~-g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~ 215 (379)
T PRK11658 142 AIGERYGIPVIEDAAHAVGTYYKGRH-----IGAR-GTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDA 215 (379)
T ss_pred HHHHHcCCeEEEECCCccCCeECCee-----cCCC-CCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcch
Confidence 47999999999999986 43112211 1111 13556555 6563 36665531 2110 00
Q ss_pred ---------cc----ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 62 ---------AY----RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 ---------~~----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
+. ..+..+..+.+.+|.++.-++.++ +..++-+++.+++++.|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~--~~~~~r~~~a~~~~~~L~~~ 274 (379)
T PRK11658 216 FDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLE--ALNARRREIAARYLQALADL 274 (379)
T ss_pred hhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence 00 011233456667777777776664 35566778888888888764
No 255
>PRK06855 aminotransferase; Validated
Probab=96.70 E-value=0.0033 Score=49.27 Aligned_cols=19 Identities=11% Similarity=0.009 Sum_probs=16.8
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||+...+
T Consensus 198 ~~a~~~~~~II~De~Y~~l 216 (433)
T PRK06855 198 DIAREYDLFIICDEIYNNI 216 (433)
T ss_pred HHHHHcCCEEEEecccccc
Confidence 4799999999999998765
No 256
>PLN02656 tyrosine transaminase
Probab=96.70 E-value=0.005 Score=47.78 Aligned_cols=19 Identities=16% Similarity=-0.066 Sum_probs=16.6
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|+||+...|
T Consensus 196 ~~a~~~~~~ii~De~y~~~ 214 (409)
T PLN02656 196 ETAEKLKILVIADEVYGHL 214 (409)
T ss_pred HHHHHcCCEEEEehhhhhc
Confidence 4789999999999998765
No 257
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=96.69 E-value=0.0049 Score=46.78 Aligned_cols=102 Identities=11% Similarity=0.075 Sum_probs=48.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~ 72 (119)
++|++++.++|+||++..|. +.... ...... +.++ +|+|.+| .| |+.+.+ .+....... ...+..+
T Consensus 172 ~l~~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~--~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~-~~~~~~~ 245 (351)
T PRK14807 172 KIIEKSRGIVVVDEAYFEFY--GNTIV-DVINEF--ENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLV-KSPYNIN 245 (351)
T ss_pred HHHHhCCCEEEEeCcchhhc--ccchH-HHhhhC--CCEEEEecchHhcccchhceeeeecCHHHHHHHHHc-cCCCCcC
Confidence 36778888999999986652 32111 111111 2333 8999996 44 666543 232211100 0112345
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
+++..++.+.|+--.-++..++++++-+++.+.|++
T Consensus 246 ~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~ 281 (351)
T PRK14807 246 SLSQVIALKVLRTGVLKERVNYILNERERLIKELSK 281 (351)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666555555554210012223344444445555543
No 258
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=96.68 E-value=0.002 Score=49.93 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=51.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cccccc-cccceeeccCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFVPQ-QAYRVFNTWMG 71 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~~~-~~~~~~~T~~~ 71 (119)
++|++||+++|+||++.. +...... ..| +|++ .++|.+++ ||+++. +.+... ...........
T Consensus 170 ~la~~~gi~livD~t~~~-~~~~~pl---~~g----~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~ 241 (390)
T PRK08133 170 EIAHAAGALLVVDNCFCT-PALQQPL---KLG----ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTL 241 (390)
T ss_pred HHHHHcCCEEEEECCCcc-cccCCch---hhC----CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCC
Confidence 479999999999999741 1111111 122 5776 67898852 355543 222211 11111112245
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
+|..+..++..++.+. ...++..++...+.+.|++
T Consensus 242 ~~~~a~~~l~gl~tl~--~R~~~~~~~a~~la~~L~~ 276 (390)
T PRK08133 242 SPFNAWVFLKGLETLS--LRMEAHSANALALAEWLEA 276 (390)
T ss_pred CHHHHHHHHcccchHH--HHHHHHHHHHHHHHHHHHh
Confidence 6777666665655443 2334444555555555554
No 259
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=96.63 E-value=0.0061 Score=48.38 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=55.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhh--cCCCC-CCCEEE--Echhhc---cCccccc--cccccccccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEH--FDLEE-SPDIVT--FSKKMQ---LGGYFLK--PEFVPQQAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~--~g~~~-~pDi~t--~gK~lg---~gG~~~~--~~~~~~~~~~~~~T~~ 70 (119)
++|++||+++|+|+++. ++ .....+. .+... ..|+++ +.|.+. .||++.. +.+.......+.....
T Consensus 229 ~la~k~gI~lIvDaAyg-~~---~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~~~ 304 (444)
T TIGR03531 229 KICANYDIPHIVNNAYG-LQ---SNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGRAS 304 (444)
T ss_pred HHHHHcCCEEEEECcCc-Cc---ChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCCCC
Confidence 48999999999999974 21 1111111 12211 257774 568774 2444432 2232211111111212
Q ss_pred CCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 71 GDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
..| ...+..+.+ .+-. +++.++..++.+++.+.|+++..++..
T Consensus 305 ~s~-~~~~~~~ll-~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~ 350 (444)
T TIGR03531 305 ASP-SLDVLITLL-SLGSKGYLELLKERKEMYKYLKELLQKLAERHGE 350 (444)
T ss_pred ChH-HHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 223 222222222 3322 245666778889999999998766643
No 260
>PTZ00376 aspartate aminotransferase; Provisional
Probab=96.62 E-value=0.0044 Score=47.97 Aligned_cols=19 Identities=16% Similarity=-0.057 Sum_probs=16.7
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||+...|
T Consensus 203 ~~a~~~~~~ii~De~Y~~~ 221 (404)
T PTZ00376 203 DVMKRKNLIPFFDMAYQGF 221 (404)
T ss_pred HHHHhCCcEEEEehhhcCc
Confidence 4799999999999998765
No 261
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=96.58 E-value=0.0081 Score=47.46 Aligned_cols=105 Identities=22% Similarity=0.223 Sum_probs=53.0
Q ss_pred ChhhhhCCEEEEcccccc---c-------cCCCcch---hhhhcCCCCCCCEEEEc--hhhc--cCcccccc--cccccc
Q psy4800 1 MYEKYHGSALLIDEVQTG---G-------GPCGKFW---CHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP--EFVPQQ 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG---~-------Gr~G~~~---~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~--~~~~~~ 61 (119)
++|++||+++|.|+++.- + |..+... +.+.+.. -|..+|+ |..+ .||+++.. .+....
T Consensus 180 eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~---sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~ 256 (431)
T cd00617 180 ELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSY---ADGCTMSAKKDGLVNIGGFLALRDDELYEEA 256 (431)
T ss_pred HHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhcc---CCEEEEEeecCCCCccceEEEeCcHHHHHHH
Confidence 489999999999999741 1 1222211 1111222 5777555 5433 47777653 243221
Q ss_pred c-----cceeeccCC-CHHHHHHHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHhh
Q psy4800 62 A-----YRVFNTWMG-DPGKVLLLKGIIDTIHNEN-LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 ~-----~~~~~T~~~-~p~~~a~a~a~l~~i~~~~-~~~~~~~~g~~l~~~L~~l 109 (119)
. ..-+.|++| ++..+++...+|+-..+++ +.+++++. ++|.+.|++.
T Consensus 257 ~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r-~~l~~~L~~~ 310 (431)
T cd00617 257 RQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQV-RYLGDRLDEA 310 (431)
T ss_pred HHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHHHHHHC
Confidence 1 112234444 4444443332554422223 33444444 7788888765
No 262
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=96.48 E-value=0.0094 Score=45.39 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=53.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc---cCccc-cccc----ccccc---------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ---LGGYF-LKPE----FVPQQ--------- 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg---~gG~~-~~~~----~~~~~--------- 61 (119)
++|++||+++++|=+|. +|..- .-.+.+ . +|+++ .-| |+ +-|+. +++. +.+..
T Consensus 163 ~~~~~~~~~~~vD~~~~-~g~~~--id~~~~--~--~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~ 234 (371)
T PF00266_consen 163 KLAHEYGALLVVDAAQS-AGCVP--IDLDEL--G--ADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFP 234 (371)
T ss_dssp HHHHHTTSEEEEE-TTT-TTTSS----TTTT--T--ESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHH
T ss_pred hhhhccCCceeEechhc-ccccc--cccccc--c--cceeeecccc-cCCCCchhhheehhhhhhccccccccccccccc
Confidence 37899999999999975 54332 122222 2 78884 458 73 11222 2221 11000
Q ss_pred ---------cc--ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 62 ---------AY--RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 ---------~~--~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
.. +...| .|.....+..++++.+++. +..++..++.+++++.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~GT--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~ 294 (371)
T PF00266_consen 235 SLQEYGLADDARRFEGGT--PNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEEL 294 (371)
T ss_dssp HHHHHCHHSTTTGSSSSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhcccccccccccccc--eeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcC
Confidence 00 01112 3555667777888888543 45567778888888888775
No 263
>PRK07049 methionine gamma-lyase; Validated
Probab=96.47 E-value=0.0034 Score=49.33 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=50.4
Q ss_pred hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc-ccceeeccCCCHHHH
Q psy4800 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ-AYRVFNTWMGDPGKV 76 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~-~~~~~~T~~~~p~~~ 76 (119)
+++++|+||+..+.-. ...... ..||+ +++|.+++ +|+++.+ .+.+.. ..........+|..+
T Consensus 209 ~~~~vvvDety~~~~~------~~pl~~--g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a 280 (427)
T PRK07049 209 HRPIIACDNTLLGPVF------QKPLEH--GADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSC 280 (427)
T ss_pred CCCEEEEECCcccccc------CCcccc--CCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 7999999998543211 111111 26776 89999962 3454432 222211 111111225778888
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 77 LLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 77 a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..++..|+.+. ...++..++.+.+.+.|++
T Consensus 281 ~l~~r~L~tl~--~R~~~~~~~a~~la~~L~~ 310 (427)
T PRK07049 281 WMLGRSLETLV--LRMERANRNARAVAEFLRD 310 (427)
T ss_pred HHHHcCCChHH--HHHHHHHHHHHHHHHHHHh
Confidence 87777776543 2344556666666666654
No 264
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=96.41 E-value=0.013 Score=44.76 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=58.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccccc---------ccccc----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKPE---------FVPQQ---- 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~~---------~~~~~---- 61 (119)
++|++||+++|-|=+|+ +|-. +--...|-. -|+.+|| |.+. .||+++... +.+..
T Consensus 134 ~~~~~~~i~lIeD~a~a-~g~~---~~g~~~G~~--gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~ 207 (363)
T PF01041_consen 134 AIARKHGIPLIEDAAQA-FGAR---YKGRPVGSF--GDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRD 207 (363)
T ss_dssp HHHHHTT-EEEEE-TTT-TT-E---ETTEETTSS--SSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETS
T ss_pred HHHHHcCCcEEEccccc-cCce---eCCEeccCC--CCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCcc
Confidence 37999999999999975 4321 111222333 5888776 8774 467776321 11111
Q ss_pred --ccc-----eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800 62 --AYR-----VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 62 --~~~-----~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
..+ .+..+-.+++.++.++.-|+.+.+ ..++-+++.+++++.|....
T Consensus 208 ~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~--~~~~R~~~a~~y~~~L~~~~ 261 (363)
T PF01041_consen 208 AFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDE--IIARRRENAQRYREALAGIP 261 (363)
T ss_dssp ECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHTTGT
T ss_pred ccccccccccCCcccccHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCC
Confidence 111 234567899999999998888854 44555677777888887653
No 265
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=96.37 E-value=0.011 Score=45.53 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=51.5
Q ss_pred hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC-E--EEEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD-I--VTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD-i--~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p 73 (119)
+++.. +++|+||++..|...+.... ... ..+. + -+|+|.+| .| ||++.+ .+...... ....+..+.
T Consensus 200 l~~~~-~~vi~DeaY~~~~~~~~~~~--~~~--~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~-~~~~~~~~~ 273 (380)
T PLN03026 200 ILELP-ILVVLDEAYIEFSTQESRMK--WVK--KYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWR-AKQPYNVSV 273 (380)
T ss_pred HHhcC-CEEEEECcchhhcCCcchHH--HHH--hCCCEEEEecchHhhcCccccceeeecCHHHHHHHHH-hcCCCCCCH
Confidence 44443 89999999876522222111 111 1123 3 28999997 55 676653 23221000 001234566
Q ss_pred HHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 74 GKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 74 ~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
++..++.++|+--+ -++..+++++.-+++.+.|+++
T Consensus 274 ~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~ 310 (380)
T PLN03026 274 AAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEV 310 (380)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 66666777663211 0123445556666677777654
No 266
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=96.35 E-value=0.0099 Score=46.14 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=54.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--cccccccc-cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQA-YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~~-~~~~~T~~ 70 (119)
++|+++|+++|+||++... ..... ...- +|++ ++.|.+++ +|+++. +.+..... .....+..
T Consensus 161 ~ia~~~g~~vivDeay~~~-~~~~p-----l~~g--aDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~ 232 (386)
T PRK08045 161 HLAREAGAVSVVDNTFLSP-ALQNP-----LALG--ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT 232 (386)
T ss_pred HHHHHcCCEEEEECCCCcc-ccCCc-----hhhC--CCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence 4789999999999997421 11111 1222 6776 78998841 344332 22222111 11122335
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|+.+-.++..|+.+. -..++..++...+.+.|++
T Consensus 233 ~~p~~~~l~~rgl~tl~--~R~~~~~~na~~la~~L~~ 268 (386)
T PRK08045 233 GGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQT 268 (386)
T ss_pred CCHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHHc
Confidence 78888877777776553 2345566666666666654
No 267
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=96.34 E-value=0.028 Score=43.85 Aligned_cols=100 Identities=21% Similarity=0.206 Sum_probs=58.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEch-hhc----cCcccccccccc--------ccccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK-KMQ----LGGYFLKPEFVP--------QQAYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK-~lg----~gG~~~~~~~~~--------~~~~~~~~ 67 (119)
++|+++++++.+|=||. +|+.-- -.+..+ .|+++||= .++ .|+.++++.+.- ..+..-..
T Consensus 165 ~i~k~~~i~fHvDAvQa-~Gkipi--~~~~~~----vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsG 237 (386)
T COG1104 165 EICKERGILFHVDAVQA-VGKIPI--DLEELG----VDLLSFSAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERGLRSG 237 (386)
T ss_pred HHHHHcCCeEEEehhhh-cCceec--cccccC----cceEEeehhhccCCCceEEEEECCCCccCceeccCcCCCCCCCC
Confidence 48999999999999986 766531 122222 79998762 121 344554332211 11111112
Q ss_pred ccCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHhh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~l 109 (119)
| -|..+.++..+++++..++ ....++.++-++|.+.|++.
T Consensus 238 T--env~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~ 279 (386)
T COG1104 238 T--ENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEI 279 (386)
T ss_pred C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 4566666666777765442 45566777777788877765
No 268
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=96.34 E-value=0.011 Score=47.43 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=16.5
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||++..+
T Consensus 226 ~~a~~~~i~lI~DEiY~~~ 244 (496)
T PLN02376 226 RFVTRKNIHLVVDEIYAAT 244 (496)
T ss_pred HHHHHcCCEEEEEcCcccc
Confidence 3789999999999998764
No 269
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=96.31 E-value=0.028 Score=44.84 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=53.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc----cC----cccc-cccccccc--------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ----LG----GYFL-KPEFVPQQ-------- 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg----~g----G~~~-~~~~~~~~-------- 61 (119)
++|+++|+++++|++|. .+-+|.. ....+| .|++++ -|.++ .| |+.. ++.+....
T Consensus 232 ~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~G----aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~ 305 (481)
T PRK04366 232 EIVHEAGGLLYYDGANL-NAILGKA-RPGDMG----FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKD 305 (481)
T ss_pred HHHHHcCCEEEEEecCh-hhhcccC-CccccC----CCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeecc
Confidence 47899999999999984 2222221 111233 688743 48874 12 2322 22111100
Q ss_pred ---------ccce---eeccCCCHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHHHHhh
Q psy4800 62 ---------AYRV---FNTWMGDPGKVLLLKGIIDTIHNENLL---DRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 ---------~~~~---~~T~~~~p~~~a~a~a~l~~i~~~~~~---~~~~~~g~~l~~~L~~l 109 (119)
+..+ +..+.++.+.+.++...+..+-.+++. ++..++.++|+++|+++
T Consensus 306 g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~ 368 (481)
T PRK04366 306 GDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI 368 (481)
T ss_pred CCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 0000 112234444444444444444444333 44677799999999876
No 270
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=96.27 E-value=0.012 Score=45.40 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=17.3
Q ss_pred ChhhhhCCEEEEcccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGG 20 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~G 20 (119)
++|++||+++|.||+...+.
T Consensus 199 ~~a~~~~~~ii~De~Y~~l~ 218 (396)
T PRK09257 199 ELLKERGLIPFLDIAYQGFG 218 (396)
T ss_pred HHHHhCCcEEEEeccccccc
Confidence 47999999999999987763
No 271
>PRK07671 cystathionine beta-lyase; Provisional
Probab=96.27 E-value=0.0064 Score=47.00 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=53.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccc-cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQA-YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~-~~~~~T~~ 70 (119)
++|+++|+++|+||++.. +..+.. .... .|++ +++|.+++ +|++.. + .+.+... ......-.
T Consensus 158 ~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g--~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~ 229 (377)
T PRK07671 158 TIAKEKGLLTIVDNTFMT-PYWQSP-----ISLG--ADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGI 229 (377)
T ss_pred HHHHHcCCEEEEECCCCc-cccCCh-----hhhC--CeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCC
Confidence 479999999999999742 111222 1222 6776 78899951 354432 2 2322111 11111124
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+..++..++.+.. ..++.+++.+.+.+.|++
T Consensus 230 ~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~L~~ 265 (377)
T PRK07671 230 LGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEFLNN 265 (377)
T ss_pred CCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHHHHc
Confidence 567777766665555432 345556666666666654
No 272
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=96.25 E-value=0.0082 Score=45.37 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=40.1
Q ss_pred hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p 73 (119)
++ ++++++|+||++..|.. .... ...... +.++ +|||.++ .| |+++.+ .+.+.... ..++++.+.
T Consensus 165 i~-~~~~~ii~De~y~~~~~-~~~~--~~~~~~--~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~-~~~~~~~~~ 237 (337)
T PRK03967 165 VL-ETGKPVVLDEAYAEFSG-KSLI--GLIDEY--PNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYR-IKPPFSLNI 237 (337)
T ss_pred HH-hcCCEEEEECchhhhcc-cchH--HHHhhC--CCEEEEecchHhhcchhhhheeeecCHHHHHHHHh-hcCCCCCCH
Confidence 45 47999999999876621 1111 111111 3443 8999996 33 665543 23221100 012234566
Q ss_pred HHHHHHHHHHH
Q psy4800 74 GKVLLLKGIID 84 (119)
Q Consensus 74 ~~~a~a~a~l~ 84 (119)
++..++.++|+
T Consensus 238 ~~q~~~~~~l~ 248 (337)
T PRK03967 238 LTMKIVRLALD 248 (337)
T ss_pred HHHHHHHHHHh
Confidence 77676666664
No 273
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=96.25 E-value=0.011 Score=45.72 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.5
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|+||++.-|
T Consensus 200 ~~a~~~~~~iI~De~y~~~ 218 (402)
T TIGR03542 200 DYANEHGSLILFDAAYSAF 218 (402)
T ss_pred HHHHHcCeEEEEEchhhhh
Confidence 4789999999999998765
No 274
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=96.23 E-value=0.016 Score=44.35 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=46.3
Q ss_pred hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL 77 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a 77 (119)
+++++|+||+..-|.. ... .....+.. +.++ +|||.+| .| ||++.. .+..... .....+..+.++..
T Consensus 183 ~~~~iI~Deay~~f~~-~~~-~~~~~~~~--~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~-~~~~~~~~~~~~~~ 257 (364)
T PRK04781 183 GKALVVVDEAYGEFSD-VPS-AVGLLARY--DNLAVLRTLSKAHALAAARIGSLIANAELIAVLR-RCQAPYPVPTPCAA 257 (364)
T ss_pred CCcEEEEeCcchhhcC-Ccc-hHHHHhhC--CCEEEEecChhhcccccceeeeeeCCHHHHHHHH-hccCCCCCCHHHHH
Confidence 4789999999876631 111 11111211 3443 9999986 34 666543 2322110 01123445566555
Q ss_pred HHHHHHHHH--hh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 78 LLKGIIDTI--HN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 78 ~a~a~l~~i--~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
++.+.|+-= .. .+..+++++.-+++.+.|+++
T Consensus 258 ~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 292 (364)
T PRK04781 258 LAEQALSAPALAVTARRVAEVRAERERLHAALAQL 292 (364)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555554321 00 112223344445555555543
No 275
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=96.19 E-value=0.01 Score=46.47 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=26.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg 47 (119)
++|++||+++|+||++. .+. ........ +|++ +++|.++
T Consensus 166 ~la~~~~i~livD~t~~-~~~-----~~~~l~~g--~Divv~S~sK~l~ 206 (418)
T TIGR01326 166 EVAHAHGVPLIVDNTFA-TPY-----LCRPIDHG--ADIVVHSATKYIG 206 (418)
T ss_pred HHHHHcCCEEEEECCCc-hhh-----cCCchhcC--CeEEEECcccccc
Confidence 47999999999999974 221 11222223 7887 8999996
No 276
>PLN02397 aspartate transaminase
Probab=96.18 E-value=0.012 Score=46.01 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=17.0
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||+...|
T Consensus 221 ~~a~~~~~~vI~De~Y~~l 239 (423)
T PLN02397 221 DLIKSKNHLPFFDSAYQGF 239 (423)
T ss_pred HHHHhCCcEEEEecccCCc
Confidence 4789999999999999877
No 277
>PRK05839 hypothetical protein; Provisional
Probab=96.17 E-value=0.017 Score=44.25 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=16.3
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||+..-+
T Consensus 182 ~~~~~~~~~ii~DE~Y~~~ 200 (374)
T PRK05839 182 KLALKHDFILINDECYSEI 200 (374)
T ss_pred HHHHHcCCEEEeccchhhc
Confidence 4689999999999997655
No 278
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=96.11 E-value=0.013 Score=44.46 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=45.5
Q ss_pred CCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHHH
Q psy4800 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVLL 78 (119)
Q Consensus 7 ~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a~ 78 (119)
++++|+||++.-|.. .... ...... .+.++ +|+|.+| .| |+...+ .+.+.... ....+..+.....+
T Consensus 178 ~~~vivDeay~~~~~-~~s~-~~~~~~--~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~-~~~~~~~~~~~~~~ 252 (354)
T PRK04635 178 DAIVVVDEAYIEFCP-EYSV-ADLLAS--YPNLVVLRTLSKAFALAGARCGFTLANEELIEILMR-VIAPYPVPLPVSEI 252 (354)
T ss_pred CcEEEEeCchHhhcc-Ccch-HHHHhh--CCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHh-hcCCCCCCHHHHHH
Confidence 599999999865531 1111 111111 13333 8999986 44 665543 23321110 11223445555555
Q ss_pred HHHHHHHH--hh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 79 LKGIIDTI--HN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 79 a~a~l~~i--~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+.|+.- +. .+..+++++.-+++.+.|+++
T Consensus 253 a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 286 (354)
T PRK04635 253 ATQALSEAGLARMKFQVLDLNAQGARLQAALSMY 286 (354)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555321 10 112233444445566666553
No 279
>PTZ00377 alanine aminotransferase; Provisional
Probab=96.10 E-value=0.011 Score=46.94 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.3
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||+..-+
T Consensus 245 ~~a~~~~~~iI~De~Y~~l 263 (481)
T PTZ00377 245 KFCYEKGIVLMADEVYQEN 263 (481)
T ss_pred HHHHHCCCEEEEehhhHhh
Confidence 4799999999999998653
No 280
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=96.08 E-value=0.0087 Score=46.59 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=53.0
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccc-cceeecc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQA-YRVFNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~-~~~~~T~ 69 (119)
++|+++|+++|+||++. ++.. ....+. .|++ .+.|.+++ ||++.. + .+..... .......
T Consensus 162 ~la~~~gi~vIvDea~~~~~~~-------~pl~~G--aDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~ 232 (388)
T PRK08861 162 QKAKAVGALVAVDNTFLTPVLQ-------KPLELG--ADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGA 232 (388)
T ss_pred HHHHHcCCEEEEECCccccccC-------CCcccC--CCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCC
Confidence 47899999999999974 3211 111222 6877 67898852 455543 2 2221111 1111122
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|..+...+..|+-+. -..++..+++..+.+.|++
T Consensus 233 ~~~p~~a~l~~rgl~Tl~--lR~~~~~~~a~~~a~~L~~ 269 (388)
T PRK08861 233 TGTPFDSYMTLRGIRTLG--ARMRVHEESAQQILAYLQT 269 (388)
T ss_pred CCChHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHh
Confidence 467887776655555443 2335556666666666653
No 281
>PRK09265 aminotransferase AlaT; Validated
Probab=96.07 E-value=0.011 Score=45.59 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.5
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|+||++..+
T Consensus 195 ~~a~~~~~~ii~De~y~~~ 213 (404)
T PRK09265 195 EIARQHNLIIFADEIYDKI 213 (404)
T ss_pred HHHHHCCCEEEEehhhhhc
Confidence 4689999999999998765
No 282
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.96 E-value=0.014 Score=46.16 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=56.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-----cCccccc-cc----------ccc---
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-----LGGYFLK-PE----------FVP--- 59 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-----~gG~~~~-~~----------~~~--- 59 (119)
++|++||+++|+|++. +....++.+..- +||+ .++|-++ .||.++. .. +..
T Consensus 171 ~iA~~~gi~livD~T~------~tP~~~~pl~~G--ADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~ 242 (432)
T PRK06702 171 DAAKELEVPFIVDNTL------ATPYLCQAFEHG--ANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDP 242 (432)
T ss_pred HHHHHcCCEEEEECCC------CchhhCChhhcC--CCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccc
Confidence 4799999999999984 123333423222 7876 7889664 2344431 11 110
Q ss_pred ---------c---------cc--cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 60 ---------Q---------QA--YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 60 ---------~---------~~--~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
. .. .........+|..+..++..|+.+. -+.++.+++...+.+.|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~--lR~~r~~~Na~~la~~L~~ 309 (432)
T PRK06702 243 SYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLH--LRMERHSENALAVAKWLAD 309 (432)
T ss_pred cccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 0 00 0011223678888888777776553 3445566777777777765
No 283
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=95.95 E-value=0.018 Score=44.73 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=16.7
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||++..+
T Consensus 197 ~~a~~~~~~ii~De~Y~~l 215 (409)
T PLN00143 197 ETARKLGILVIADEVYGHI 215 (409)
T ss_pred HHHHHcCCeEEEEcccccc
Confidence 4789999999999998765
No 284
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=95.89 E-value=0.0065 Score=47.03 Aligned_cols=39 Identities=23% Similarity=0.155 Sum_probs=25.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg 47 (119)
++|++||+++|+|++++.. -.+.. .+.. .|+++ +.|.++
T Consensus 158 ~la~~~gi~vivD~t~a~~-~~~~p-----~~~g--aDivv~S~tK~l~ 198 (380)
T PRK06176 158 SVAKDHGLLTIVDNTFATP-YYQNP-----LLLG--ADIVVHSGTKYLG 198 (380)
T ss_pred HHHHHcCCEEEEECCcccc-ccCCc-----cccC--CCEEEecCceecc
Confidence 4799999999999997521 11111 2223 78875 559885
No 285
>PRK07050 cystathionine beta-lyase; Provisional
Probab=95.88 E-value=0.0084 Score=46.64 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=48.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccc-cc-ccccccc-cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFL-KP-EFVPQQA-YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~-~~-~~~~~~~-~~~~~T~~ 70 (119)
++|++||+++|+||++. .|-.-.. ...| .|++ .+.|.+++ ||.++ .+ .+..... ........
T Consensus 174 ~ia~~~gi~livD~a~a-~~~~~~~---l~~G----aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~ 245 (394)
T PRK07050 174 AAARARGVVTAIDNTYS-AGLAFKP---FEHG----VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIG 245 (394)
T ss_pred HHHHHcCCEEEEECCcc-cccccCH---HHcC----CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 47899999999999974 2111111 1123 5766 68898842 33333 22 2322111 11111224
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+..++..|+-+. ...++..++...+.+.|++
T Consensus 246 ~~~~~a~l~lr~l~tl~--~Rl~~~~~~a~~la~~L~~ 281 (394)
T PRK07050 246 VSADDCSLVLRGLPSLQ--VRLAAHDRSALEVAEWLKA 281 (394)
T ss_pred CCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 56666544443333222 2344555555555555543
No 286
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=95.86 E-value=0.021 Score=45.39 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.3
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||+...+
T Consensus 218 ~~a~~~~~~iI~DE~Y~~~ 236 (468)
T PLN02450 218 DFITAKNIHLISDEIYSGT 236 (468)
T ss_pred HHHHHCCcEEEEEcccccc
Confidence 3689999999999998754
No 287
>PLN02271 serine hydroxymethyltransferase
Probab=95.85 E-value=0.043 Score=44.95 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=56.0
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccc-cccccc---------------
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFL-KPEFVP--------------- 59 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~-~~~~~~--------------- 59 (119)
++|+++|++|++|-+|. |+ .... .++ ......|++ |.-|+|. -||++. .+....
T Consensus 320 eIAdevGA~LmvD~AH~aGL--Ia~g-~~~--sP~~~aDvvt~TTHKtLrGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~ 394 (586)
T PLN02271 320 QIADKCGAVLMCDMAHISGL--VAAK-ECV--NPFDYCDIVTSTTHKSLRGPRGGIIFYRKGPKLRKQGMLLSHGDDNSH 394 (586)
T ss_pred HHHHHcCCEEEEECcccccc--cccC-cCC--CCCcCCcEEEeCCcccCCCCCceEEEecccccccccCCcccccccccc
Confidence 48999999999999986 44 3211 111 111137988 4569994 355554 322100
Q ss_pred --c---cccceeeccCCCHH--HHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 60 --Q---QAYRVFNTWMGDPG--KVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 60 --~---~~~~~~~T~~~~p~--~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
. -....+-.+.+.|. ..|+-..+++.+..++ ..+++-+|.+.|.+.|.+.
T Consensus 395 ~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~ 454 (586)
T PLN02271 395 YDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR 454 (586)
T ss_pred HHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC
Confidence 0 00001112222222 2333344556555444 5567888888888888764
No 288
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.81 E-value=0.021 Score=45.15 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=26.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg 47 (119)
++|++||+++|+|++|. .+...... .+| +|++ ++.|.+|
T Consensus 179 ~la~~~gi~liVD~t~a-~~~~~~pl---~~G----aDivv~S~tK~lg 219 (436)
T PRK07812 179 EVAHEAGVPLIVDNTIA-TPYLIRPL---EHG----ADIVVHSATKYLG 219 (436)
T ss_pred HHHHHcCCEEEEECCCc-ccccCCch---hcC----CCEEEEecccccC
Confidence 47999999999999974 11111111 123 6776 7899996
No 289
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.074 Score=41.75 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=53.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc----cCccccccccccc--------------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ----LGGYFLKPEFVPQ-------------- 60 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~~~~-------------- 60 (119)
++|++||+++++|=+|. .|- . ..-.+..| .|+++|| |+|. .|.++.++.+.+.
T Consensus 186 ~la~~~ga~v~VDaaq~-~~h-~-~idv~~l~----~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~ 258 (405)
T COG0520 186 ELAHEHGALVLVDAAQA-AGH-L-PIDVQELG----CDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYV 258 (405)
T ss_pred HHHHHcCCEEEEECccc-cCc-c-CCCchhcC----CCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeee
Confidence 48999999999999985 211 1 11122233 7888666 7552 2233333221110
Q ss_pred ---------cccceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 61 ---------QAYRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 61 ---------~~~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
..+.-+-.-..|........++++++++. +..++.+++.+++.++|+++
T Consensus 259 ~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~ 319 (405)
T COG0520 259 SRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSEL 319 (405)
T ss_pred cccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000101013444445556788888764 35556666666777766654
No 290
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=95.76 E-value=0.085 Score=41.69 Aligned_cols=105 Identities=18% Similarity=0.103 Sum_probs=55.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC-------EEEEc--hhhc--c-Ccccc-c-cccccc-----c
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD-------IVTFS--KKMQ--L-GGYFL-K-PEFVPQ-----Q 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD-------i~t~g--K~lg--~-gG~~~-~-~~~~~~-----~ 61 (119)
++|.++++.|+|||+|.+.-+.-.. -......- .| ++|-| |.|+ + ++++- . +...+. .
T Consensus 191 ~~~h~~~~~llvDEAhGah~~F~~l-p~~a~~~g--ad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~ 267 (417)
T PF01276_consen 191 EICHKHGIPLLVDEAHGAHFGFHPL-PRSALALG--ADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEA 267 (417)
T ss_dssp HHHCCTECEEEEE-TT-TTGGCSGG-GTTCSSTT--SS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHH
T ss_pred HHhcccCCEEEEEccccccccCCCC-ccchhhcc--CccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHH
Confidence 3789999999999998653222222 11122232 55 77544 7774 1 11111 1 111111 1
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHH-hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800 62 AYRVFNTWMGDPGKVLLLKGIIDTI-HN--ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 ~~~~~~T~~~~p~~~a~a~a~l~~i-~~--~~~~~~~~~~g~~l~~~L~~l 109 (119)
-..+.|| +.+=+-+|..-.+.+++ .+ +++.++.-++.+.+|++++++
T Consensus 268 l~~~~TT-SPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~ 317 (417)
T PF01276_consen 268 LSMHQTT-SPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL 317 (417)
T ss_dssp HHHHS-S-S--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 1123344 55555566666666777 33 357788888899999999653
No 291
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=95.75 E-value=0.072 Score=42.55 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=56.3
Q ss_pred ChhhhhCCEEEEcccccccc-------C----CCcc-h--hhhhcCCCCCCCEEEEc--hhhc--cCcccccc--ccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGG-------P----CGKF-W--CHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP--EFVPQ 60 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~G-------r----~G~~-~--~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~--~~~~~ 60 (119)
++|++||+.||.|=++. +| | .|+. + ..+.+. ..|++||| |.++ .||+++.. .+...
T Consensus 205 elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~i~ei~~e~~s---~aD~~t~S~~K~~~~~~GG~i~t~D~eL~~~ 280 (460)
T PRK13237 205 ELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKSIKEIVHEMFS---YADGCTMSGKKDCLVNIGGFLAMNDEELFDE 280 (460)
T ss_pred HHHHHcCCEEEEECcch-hcChhhhcccccccCCCcHhHHhhhccC---cCcEEEEeCCCCCCCCCceEEEECCHHHHHH
Confidence 47999999999999975 32 1 1110 0 001111 26888655 6665 47777642 23221
Q ss_pred ----ccc-ceeeccCCCHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 61 ----QAY-RVFNTWMGDPG-KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 61 ----~~~-~~~~T~~~~p~-~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
... .-+.||+|-.. -+.+.--.|+-..+++..++.-+..++|.+.|++.
T Consensus 281 ~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~ 335 (460)
T PRK13237 281 AKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA 335 (460)
T ss_pred HHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence 111 23457776433 22222223443444455555555668888888765
No 292
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=95.71 E-value=0.017 Score=46.31 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=16.3
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++|++++|.||+..-|
T Consensus 308 ~~a~~~~~~ii~DE~Y~~~ 326 (517)
T PRK13355 308 DIAREHQLIIFSDEIYDRL 326 (517)
T ss_pred HHHHHcCcEEEEehhhhhh
Confidence 4789999999999998654
No 293
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=95.69 E-value=0.024 Score=44.31 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=52.6
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhh-hhcCCCCCCCEEEEc--hhhc--cCccccccc-cccc-cccceeeccCCCH
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCH-EHFDLEESPDIVTFS--KKMQ--LGGYFLKPE-FVPQ-QAYRVFNTWMGDP 73 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~-~~~g~~~~pDi~t~g--K~lg--~gG~~~~~~-~~~~-~~~~~~~T~~~~p 73 (119)
++|++||+++|+|.+ +|. +.-+.... +....- +|+++|| |.|| .+|+++..+ +... ....+.-..--.+
T Consensus 181 ~ia~~~~lpvivD~a-Sg~-~v~~e~~l~~~la~G--aDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~Ralrv~K 256 (395)
T COG1921 181 EIAHEKGLPVIVDLA-SGA-LVDKEPDLREALALG--ADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLKRALRVDK 256 (395)
T ss_pred HHHHHcCCCEEEecC-Ccc-ccccccchhHHHhcC--CCEEEEecchhcCCCccceEechHHHHHHHHhhhhhhhhhcCc
Confidence 479999999999998 654 21121111 222222 8999776 7886 578887643 3321 1122222334467
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy4800 74 GKVLLLKGIIDTIHNEN 90 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~~~ 90 (119)
...++..++|+.+.+++
T Consensus 257 ~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 257 ETLAALEAALELYLQPE 273 (395)
T ss_pred HhHHHHHHHHHHHcCch
Confidence 77888889999887654
No 294
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=95.68 E-value=0.048 Score=42.78 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=16.4
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||+...|
T Consensus 217 ~~a~~~~i~ii~De~Y~~~ 235 (430)
T PLN00145 217 ETARKLGILVIADEVYDHL 235 (430)
T ss_pred HHHHHcCCEEEEeccchhh
Confidence 3689999999999998754
No 295
>PRK07908 hypothetical protein; Provisional
Probab=95.65 E-value=0.037 Score=41.84 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=46.3
Q ss_pred hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p 73 (119)
+|+ ++.++|+||++.-+ ..+..-...... .++++ +|+|.++ .| ||+..+ .+....... ...+..++
T Consensus 164 l~~-~~~~iIvDe~y~~~-~~~~~~~l~~~~---~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~-~~~~~~~~ 237 (349)
T PRK07908 164 LRR-PGRILVVDEAFADA-VPGEPESLAGDD---LPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRG-RAHWPVGT 237 (349)
T ss_pred HHh-cCCEEEEECcchhh-ccCCcccccccc---CCCEEEEeecccccCCccceeeeeecCHHHHHHHHhc-CCCCCccH
Confidence 564 57889999998644 222211111111 23444 7899885 34 666543 222211000 01123345
Q ss_pred HHHHHHHHHHH--HHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 74 GKVLLLKGIID--TIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 74 ~~~a~a~a~l~--~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
+..+++.+.++ ..+. ++.+++++++-+++.+.|+++
T Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 276 (349)
T PRK07908 238 LQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV 276 (349)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 54444433332 1110 123444555555666666553
No 296
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.54 E-value=0.026 Score=44.48 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=25.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg 47 (119)
++|++||+++|+|+++. .+-.-... .+| .|++ .+.|.+|
T Consensus 173 ~la~~~gi~vIvD~t~a-~~~~~~pl---~~g----aDivv~S~tK~lg 213 (431)
T PRK08248 173 AIAHEHGIPLIVDNTFA-SPYLLRPI---EHG----ADIVVHSATKFIG 213 (431)
T ss_pred HHHHHcCCEEEEeCCCC-ccccCChh---HcC----CCEEEEcCccccC
Confidence 47999999999999964 11111111 123 7877 5779986
No 297
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=95.35 E-value=0.043 Score=41.92 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=45.3
Q ss_pred hCCEEEEccccccccCCCc--chhhhhc-CCCCCCCEE---EEchhhc-cC---ccccc--cccccccccceeeccCCCH
Q psy4800 6 HGSALLIDEVQTGGGPCGK--FWCHEHF-DLEESPDIV---TFSKKMQ-LG---GYFLK--PEFVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~--~~~~~~~-g~~~~pDi~---t~gK~lg-~g---G~~~~--~~~~~~~~~~~~~T~~~~p 73 (119)
+++++|+||+..-|- .+. ....... ... +.++ +|||.++ .| ||++. ..+...... ....+..|.
T Consensus 190 ~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~--~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~-~~~~~~~~~ 265 (371)
T PRK05166 190 PETLIVVDEAYAEYA-AGDDYPSALTLLKARG--LPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDR-VRTPFNVNG 265 (371)
T ss_pred CCcEEEEECcHHHhc-CCcCcccHHHHHhhcC--CCEEEEeechHhhhcchhheeeeecCCHHHHHHHHH-hccCCCCCH
Confidence 488999999976442 221 1111111 111 2333 7999996 44 66432 233221110 112334566
Q ss_pred HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800 74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~ 108 (119)
++..++.+.+..-.. ++.++..+++-+++.+.|++
T Consensus 266 ~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 301 (371)
T PRK05166 266 AAQAAALAALDDEEHLAKGVALALAERERLKKELAE 301 (371)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665556655531100 11223334444555555554
No 298
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=95.33 E-value=0.057 Score=41.35 Aligned_cols=73 Identities=19% Similarity=0.172 Sum_probs=35.4
Q ss_pred hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhccC----cccccc-ccccccccceeeccCCCHHHHH
Q psy4800 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQLG----GYFLKP-EFVPQQAYRVFNTWMGDPGKVL 77 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg~g----G~~~~~-~~~~~~~~~~~~T~~~~p~~~a 77 (119)
+++++|.||+..-|. +.. ...... ..+.++ +|||.+|.. ||++.. .+.+...... ..+..+.++-.
T Consensus 198 ~~~~iI~De~Y~~~~--~~~-~~~~~~--~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~-~~~~~~~~~q~ 271 (374)
T PRK02610 198 EDILVVIDEAYFEFS--QTT-LVGELA--QHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR-LPYNLPSFSQL 271 (374)
T ss_pred CCcEEEEeccccccC--ccc-hHHHHh--cCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhc-CCCCCCHHHHH
Confidence 489999999986552 111 111111 113333 899999633 455443 2322110000 12234566655
Q ss_pred HHHHHHH
Q psy4800 78 LLKGIID 84 (119)
Q Consensus 78 ~a~a~l~ 84 (119)
++.++++
T Consensus 272 a~~~~l~ 278 (374)
T PRK02610 272 AAQLALE 278 (374)
T ss_pred HHHHHhc
Confidence 5555554
No 299
>PLN02672 methionine S-methyltransferase
Probab=95.24 E-value=0.053 Score=47.40 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=16.7
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||++..+
T Consensus 856 ela~k~di~VIsDEaYsdL 874 (1082)
T PLN02672 856 SVCAKYGARVIIDTSFSGL 874 (1082)
T ss_pred HHHHHcCCEEEEeCCCCcc
Confidence 4799999999999999764
No 300
>PRK05967 cystathionine beta-lyase; Provisional
Probab=95.14 E-value=0.014 Score=45.72 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=51.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccccc-cccccc--cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKPE-FVPQQA--YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~~-~~~~~~--~~~~~T~~ 70 (119)
++|++||+++|+|+++.. +...-.-.+| +|++ ...|.+++ +|.+..+. +..... .....+ .
T Consensus 173 ~la~~~g~~vvVD~t~a~----p~~~~pl~~G----aDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~-~ 243 (395)
T PRK05967 173 EAAHRHGAIVMMDNTWAT----PLYFRPLDFG----VDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGL-C 243 (395)
T ss_pred HHHHHhCCEEEEECCccC----ceecChhHcC----CCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCC-C
Confidence 479999999999999742 1111111134 6776 78899853 35444322 111100 111122 3
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+-..+..|+-+. -..++..+++..+.+.|++
T Consensus 244 ~~p~da~l~~rgl~Tl~--lR~~~~~~na~~lA~~L~~ 279 (395)
T PRK05967 244 AGPDDTYQILRGLRTMG--IRLEHHRKSALEIARWLEG 279 (395)
T ss_pred CCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHHh
Confidence 56777666555555443 2334455566566555554
No 301
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=95.14 E-value=0.047 Score=41.33 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=47.1
Q ss_pred hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCE---EEEchhhcc-C---cccccc-ccccccccceeeccCCCH
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDI---VTFSKKMQL-G---GYFLKP-EFVPQQAYRVFNTWMGDP 73 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi---~t~gK~lg~-g---G~~~~~-~~~~~~~~~~~~T~~~~p 73 (119)
+++..++++|+||++..|.. .. +.. .. ...+.+ -+|+| .+. | |+++.. .+.+..... ...+..+.
T Consensus 178 i~~~~~~~ii~De~y~~~~~-~~-~~~-~~--~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~-~~~~~~~~ 250 (356)
T PRK04870 178 IIEAAPGLVVVDEAYQPFAG-DS-WLP-RL--ARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKV-RPPYNVNV 250 (356)
T ss_pred HHHHCCCEEEEECCchhhcC-cc-hHH-HH--hhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHc-cCCCcCCH
Confidence 34444889999999876632 11 111 11 111233 38999 542 2 455432 232211000 01234455
Q ss_pred HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800 74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l 109 (119)
++..++...++..+. ++..++++++-+++.+.|+++
T Consensus 251 ~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 287 (356)
T PRK04870 251 LTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL 287 (356)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 665555555542111 123344555555666666543
No 302
>PRK05367 glycine dehydrogenase; Provisional
Probab=95.13 E-value=0.13 Score=44.53 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=52.3
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCc-----c-ccccccccccccce---
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGG-----Y-FLKPEFVPQQAYRV--- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG-----~-~~~~~~~~~~~~~~--- 65 (119)
++|+++|+++++|-+|. ++...-.. ..+| .|+++++ |.++ ++| + .+.+.+....+...
T Consensus 664 ~i~h~~G~~v~VDgA~~~al~~l~~p---g~~G----ADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~ 736 (954)
T PRK05367 664 EIVHEHGGQVYLDGANMNAQVGLARP---GDIG----ADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQI 736 (954)
T ss_pred HHHHHcCCEEEEECcChhhccCCCCh---hhcC----CCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCc
Confidence 46899999999999985 22111111 1123 7998776 9875 233 2 22333322111110
Q ss_pred ------eeccCCCHH-HHHHHHHHHHHHh---hhcHHHHHH---HHHHHHHHHHHhh
Q psy4800 66 ------FNTWMGDPG-KVLLLKGIIDTIH---NENLLDRVQ---KTGDILLNVRLGL 109 (119)
Q Consensus 66 ------~~T~~~~p~-~~a~a~a~l~~i~---~~~~~~~~~---~~g~~l~~~L~~l 109 (119)
.++....+. +...+..+.-++. .+.+.+..+ .+.+|+.++|++.
T Consensus 737 ~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~ 793 (954)
T PRK05367 737 AGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH 793 (954)
T ss_pred CCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011111222 2223333444443 345655555 7889999999764
No 303
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=95.05 E-value=0.069 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.9
Q ss_pred ChhhhhCCEEEEccccc
Q psy4800 1 MYEKYHGSALLIDEVQT 17 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t 17 (119)
++|++|++++|.||++.
T Consensus 206 ~~a~~~~~~iI~De~Y~ 222 (416)
T PRK09440 206 ALARQHNIPLLIDNAYG 222 (416)
T ss_pred HHHHHcCCcEEEeCCcc
Confidence 47899999999999963
No 304
>KOG0257|consensus
Probab=94.93 E-value=0.041 Score=43.17 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=52.0
Q ss_pred ChhhhhCCEEEEccccccccCCCc---chhhh--hcCCCCCCCEEEEchhhc-cC---ccccccc-cccccccce-eecc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK---FWCHE--HFDLEESPDIVTFSKKMQ-LG---GYFLKPE-FVPQQAYRV-FNTW 69 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~---~~~~~--~~g~~~~pDi~t~gK~lg-~g---G~~~~~~-~~~~~~~~~-~~T~ 69 (119)
+||++||+++|.|||.--+=-.|. .+++. .+... .-+-.+||.++ +| |..+..+ +......-| ...|
T Consensus 199 ~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ert--itvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~ 276 (420)
T KOG0257|consen 199 ELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERT--ITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVF 276 (420)
T ss_pred HHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheE--EEeccccceeeeeeeeeeeeechHHhhhhHHHHhhcccc
Confidence 589999999999999753312221 12211 01111 23337899987 55 5555543 221111111 1111
Q ss_pred -CCCHHHHHHHHH-HHHH-Hhhh-------cHHHHHHHHHHHHHHHHHhh
Q psy4800 70 -MGDPGKVLLLKG-IIDT-IHNE-------NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 70 -~~~p~~~a~a~a-~l~~-i~~~-------~~~~~~~~~g~~l~~~L~~l 109 (119)
...|+..|.+.+ .++. +.++ ++....+++=+.|.+.|.++
T Consensus 277 ~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l 326 (420)
T KOG0257|consen 277 TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL 326 (420)
T ss_pred ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123443332211 1111 1211 24455677777888888887
No 305
>PRK09028 cystathionine beta-lyase; Provisional
Probab=94.74 E-value=0.03 Score=43.74 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=52.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc--cceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA--YRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~--~~~~~T~~ 70 (119)
++|++||+++|+||++.. +. .+....+- +|++ ...|.+++ +|.+..+ .+..... .....+ .
T Consensus 170 ~la~~~g~~lvvD~t~a~----p~--~~~Pl~~G--aDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~-~ 240 (394)
T PRK09028 170 RIAHEHDIVVMLDNTWAS----PI--NSRPFEMG--VDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQ-C 240 (394)
T ss_pred HHHHHcCCEEEEECCccc----cc--cCCccccC--ceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCC-C
Confidence 478999999999999852 21 11112222 7877 68899842 3443322 2211100 001112 3
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+-..+..|+-+. -..++..++...+.+.|++
T Consensus 241 ~~p~~a~l~~rgl~TL~--lR~~~~~~na~~la~~L~~ 276 (394)
T PRK09028 241 TSPDDVYLAMRGLRTLG--VRLAQHEKNALKVANWLAT 276 (394)
T ss_pred CCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHhc
Confidence 57777766655555442 2345556666666666654
No 306
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=94.53 E-value=0.19 Score=38.61 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=58.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc-cCcccc---cccccc----cc------ccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ-LGGYFL---KPEFVP----QQ------AYR 64 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg-~gG~~~---~~~~~~----~~------~~~ 64 (119)
+++++||+++|+|=+|+ +|- .. ..++ ..|+++++ |++| .+|+.. +..+.. .. +.+
T Consensus 149 ~I~~~~g~~~iVDavqs-~g~--~~-----idv~-~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~ 219 (361)
T TIGR01366 149 RPEGSDDALVVIDATSG-AGG--LP-----VDIA-ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEF 219 (361)
T ss_pred cccccCCCeEEEEcCcc-ccC--CC-----CCHH-HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchh
Confidence 35788999999999976 321 11 2222 16887554 8886 345443 322110 00 001
Q ss_pred -----------eeeccCCCHH-HHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhhh
Q psy4800 65 -----------VFNTWMGDPG-KVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 65 -----------~~~T~~~~p~-~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l~ 110 (119)
-..|...+|+ .+.+..+++++++++ . ..++.+++.+++++.|+++.
T Consensus 220 ~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~ 281 (361)
T TIGR01366 220 LSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERP 281 (361)
T ss_pred hhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0133344444 444678889988764 2 34667788888888887764
No 307
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=94.48 E-value=0.048 Score=42.84 Aligned_cols=104 Identities=20% Similarity=0.258 Sum_probs=54.0
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc---------------ccccc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP---------------EFVPQ 60 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~---------------~~~~~ 60 (119)
++|++.|++|++|=+|. |+=-.| .+ ...+. ..|++ +.-|.|. -||++... .+.+.
T Consensus 191 eIad~vga~l~~D~sH~~GLIa~g-~~-~~P~~---~ADvvt~sThKtl~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~ 265 (399)
T PF00464_consen 191 EIADEVGAYLMADISHIAGLIAGG-LF-PNPFP---YADVVTGSTHKTLRGPRGGIILTNKGSKNVDKKGKEIDEELAEK 265 (399)
T ss_dssp HHHHHTT-EEEEE-TTTHHHHHTT-SS---GCC---TSSEEEEESSGGG-SSS-EEEEES-SEEEE-TTS-EEEHHHHHH
T ss_pred HHHHhcCcEEEecccccccceehh-ee-cCccc---cceEEEeeccccccccCceEEEEcCCccccCCcccccHHHHHHH
Confidence 47999999999999996 551112 11 11122 37998 5679996 47877644 12111
Q ss_pred cccceeeccCCCHH--HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 61 QAYRVFNTWMGDPG--KVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 61 ~~~~~~~T~~~~p~--~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
-....+..+.++|. ..++-..++....++ +..+++-++.+.|.+.|++.
T Consensus 266 I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~ 319 (399)
T PF00464_consen 266 IDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER 319 (399)
T ss_dssp HHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11112222233333 222222334443333 45677889999999998875
No 308
>PLN02231 alanine transaminase
Probab=94.47 E-value=0.064 Score=43.50 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.6
Q ss_pred ChhhhhCCEEEEccccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~ 19 (119)
++|++||+++|.||++.-+
T Consensus 298 ~~a~~~~l~lI~DEvY~~l 316 (534)
T PLN02231 298 EFCKQEGLVLLADEVYQEN 316 (534)
T ss_pred HHHHHcCCEEEEEccchhc
Confidence 4799999999999998654
No 309
>PRK08064 cystathionine beta-lyase; Provisional
Probab=94.35 E-value=0.054 Score=42.03 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=48.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccc-cc-ccccc-cccceeeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFL-KP-EFVPQ-QAYRVFNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~-~~-~~~~~-~~~~~~~T~~ 70 (119)
++|+++|+++|+||++..+ -..... .+| .|++ ++.|.+++ +|+.. .+ .+.+. .+........
T Consensus 162 ~la~~~g~~vvvD~a~~~~-~~~~~~---~~g----~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~ 233 (390)
T PRK08064 162 KLAKAIGCLTFVDNTFLTP-LLQKPL---DLG----ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAV 233 (390)
T ss_pred HHHHHcCCEEEEECCCCcc-cccCch---hhC----CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 4799999999999997421 111111 123 6777 67799841 35433 22 23221 1111111224
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..+...+..++.+ +...++..++...+.+.|++
T Consensus 234 ~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L~~ 269 (390)
T PRK08064 234 LGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYLQE 269 (390)
T ss_pred CCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHhc
Confidence 5566655544333322 12334445555555555554
No 310
>PRK05939 hypothetical protein; Provisional
Probab=94.25 E-value=0.11 Score=40.54 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=25.7
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg 47 (119)
++|++||+++|+|++|.. +.. ++..... .|++ .++|.++
T Consensus 155 ~la~~~gi~livD~t~a~----~~~--~~~~~~g--aDivv~S~sK~~~ 195 (397)
T PRK05939 155 ALCRERGLLYVVDNTMTS----PWL--FRPKDVG--ASLVINSLSKYIA 195 (397)
T ss_pred HHHHHcCCEEEEECCccc----ccc--cCccccC--CEEEEecCeeccc
Confidence 479999999999999742 111 1111222 6766 7899996
No 311
>PRK06434 cystathionine gamma-lyase; Validated
Probab=93.99 E-value=0.08 Score=41.24 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=51.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc-----Cccccc-c-ccccccccce-eeccC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL-----GGYFLK-P-EFVPQQAYRV-FNTWM 70 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~-----gG~~~~-~-~~~~~~~~~~-~~T~~ 70 (119)
++|++++ +++|-++. -+-.+ +..+.- .|++++| |-+++ ||+++. + .+........ ..-..
T Consensus 172 ~la~~~~--lvVD~t~~-s~~~~-----~pl~~g--aDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~ 241 (384)
T PRK06434 172 SFCHEND--VIVDATFA-SPYNQ-----NPLDLG--ADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSN 241 (384)
T ss_pred HHHHHcC--eEEECCCC-CcccC-----CchhcC--CCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCC
Confidence 4789998 46798862 11122 222333 7888655 76742 565543 2 2221111110 11124
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
.+|..++..+..|+.+. .+.++-+++...+.+.|+.
T Consensus 242 ~~~~~A~l~~~gL~tL~--~R~~r~~~~a~~~a~~L~~ 277 (384)
T PRK06434 242 PDPIQAYLALRGLKTLG--LRMEKHNKNGMELARFLRD 277 (384)
T ss_pred CCHHHHHHHHhCCCcHH--HHHHHHHHHHHHHHHHHHc
Confidence 57888877777666663 3556667777777776664
No 312
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=93.97 E-value=0.29 Score=37.37 Aligned_cols=102 Identities=7% Similarity=0.007 Sum_probs=54.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc---cCcccccccccc----cccc--------ce
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ---LGGYFLKPEFVP----QQAY--------RV 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg---~gG~~~~~~~~~----~~~~--------~~ 65 (119)
++++.||+++++|=+|+ +|-. ..-.+..+ .++..-=|.+| .|.++.+..+.. ..+. ..
T Consensus 157 ~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~----~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd00611 157 EVPDTGGVPLVADMSSN-ILSR--PIDVSKFG----VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADN 229 (355)
T ss_pred eecccCCCeEEEEcccc-ccCC--CCCHHHhC----EEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhc
Confidence 36778999999999986 3221 11122222 22222346554 233344332221 1000 00
Q ss_pred eeccC-CCHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhh
Q psy4800 66 FNTWM-GDPGKVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ~~T~~-~~p~~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l 109 (119)
..+++ .|-....+..++|+++.++ + +.++.+++.+++++.|+++
T Consensus 230 ~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~ 278 (355)
T cd00611 230 NSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS 278 (355)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 11222 3344667778899998765 3 4456678888888888876
No 313
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=93.87 E-value=0.19 Score=39.73 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=16.0
Q ss_pred ChhhhhCCEEEEcccccc
Q psy4800 1 MYEKYHGSALLIDEVQTG 18 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG 18 (119)
++|++|++++|.||+...
T Consensus 227 ~~~~~~~i~lI~DEiYa~ 244 (447)
T PLN02607 227 DFVVRKNIHLVSDEIYSG 244 (447)
T ss_pred HHHHHCCCEEEEeccccc
Confidence 479999999999999875
No 314
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=93.79 E-value=0.042 Score=42.59 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=39.3
Q ss_pred ChhhhhCCEEEEccccccc-------cCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCccccccc-ccccc-ccceee
Q psy4800 1 MYEKYHGSALLIDEVQTGG-------GPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLKPE-FVPQQ-AYRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~-------Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~~-~~~~~-~~~~~~ 67 (119)
+++++|++++|.|-. +|. |-....-..+... ..+|+++|| |.|| ..|+++..+ +.+.. .....-
T Consensus 164 ~la~~~~lp~i~Dlg-sG~l~dl~~~gl~~Ep~v~~~~~--~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~pl~R 240 (367)
T PF03841_consen 164 ELAKEHGLPVIVDLG-SGLLVDLSPYGLPDEPTVQEYLA--AGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKHPLGR 240 (367)
T ss_dssp HHHHHHT--EEEE-T-THHHHHHHTT----------CCC--CT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHHHHTT
T ss_pred HHHhhcCCcEEEECC-CCCCcCcccccCccccHHHHHhh--cCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhCCCcc
Confidence 478999999999966 321 1111111112122 238999997 7775 457777543 33211 111222
Q ss_pred ccCCCHHHHHHHHHHHHHHhh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHN 88 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~ 88 (119)
.+--+....++-.++|+.+.+
T Consensus 241 alrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 241 ALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp T-B--HHHHHHHHHHHHH---
T ss_pred eEeeCHHHHHHHHHHHHHHHH
Confidence 334567788888888887653
No 315
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=93.45 E-value=0.36 Score=38.66 Aligned_cols=106 Identities=14% Similarity=0.061 Sum_probs=56.9
Q ss_pred ChhhhhCCEEEEccccc---cc-------cCCCcc---hhhhhcCCCCCCCEE--EEchhhc--cCccccccc-----cc
Q psy4800 1 MYEKYHGSALLIDEVQT---GG-------GPCGKF---WCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE-----FV 58 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t---G~-------Gr~G~~---~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~-----~~ 58 (119)
++|++||+.+++|=+.- .+ +-.|.. .+-+.+. ..|.+ +++|+++ .||+++.+. +.
T Consensus 211 ~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~---~aDsvt~slsKglgApvGg~Lag~d~~~~~l~ 287 (467)
T TIGR02617 211 EIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK---YADMLAMSAKKDAMVPMGGLLCFKDDSFFDVY 287 (467)
T ss_pred HHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc---cCCEEEEEcCCCCCCcccceEEecchhHHHHH
Confidence 48999999999996531 11 112211 1112222 37876 8999997 577776432 11
Q ss_pred cc----c-ccceeeccCCCHHHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 59 PQ----Q-AYRVFNTWMGDPGKVLLLKG-IIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 59 ~~----~-~~~~~~T~~~~p~~~a~a~a-~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
.. . ....+-||+|-.---..+++ .|+-..+++.++.--...+||.++|++.
T Consensus 288 ~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~ 344 (467)
T TIGR02617 288 TECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI 344 (467)
T ss_pred HHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence 11 1 22345688874442222333 3444444554443333346888888765
No 316
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=93.37 E-value=0.32 Score=38.04 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=18.6
Q ss_pred HHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800 81 GIIDTIHNE---NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 81 a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l 109 (119)
..++.+.++ +..++..++.++++++|+++
T Consensus 340 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 371 (447)
T PRK00451 340 IYMSLLGPEGLRELAEQNHQKAHYLAERLAEI 371 (447)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345544332 45566778888888888765
No 317
>PRK06836 aspartate aminotransferase; Provisional
Probab=93.35 E-value=0.13 Score=39.59 Aligned_cols=19 Identities=16% Similarity=-0.097 Sum_probs=15.8
Q ss_pred Chhhh------hCCEEEEccccccc
Q psy4800 1 MYEKY------HGSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~------~~~lli~DEv~tG~ 19 (119)
++|++ ||+++|.||+...+
T Consensus 195 ~la~~~~~~~~~~~~ii~De~y~~~ 219 (394)
T PRK06836 195 ALLEEKSKEYGRPIYLISDEPYREI 219 (394)
T ss_pred HHHHHhhhccCCCeEEEEecccccc
Confidence 36777 89999999998755
No 318
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.14 E-value=0.5 Score=36.90 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=57.2
Q ss_pred ChhhhhCCEEEEccccccccCC--CcchhhhhcCCCCCCCEEEEc----hhhc--cCcccccc--cc-------ccc--c
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPC--GKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKP--EF-------VPQ--Q 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~--G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~--~~-------~~~--~ 61 (119)
+||++||+++|-|=+|. +|-+ |+ +.|-- -|+.+|| |-|. -||+++.. ++ .+. .
T Consensus 143 ~la~~~~l~vIEDaAqa-~Ga~y~gk-----~vGt~--Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~ 214 (374)
T COG0399 143 ALAKRHGLPVIEDAAQA-HGATYKGK-----KVGSF--GDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLS 214 (374)
T ss_pred HHHHHcCCeEEEEcchh-ccCeecCc-----ccccc--cceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcC
Confidence 48999999999999974 3222 11 11111 3444333 5554 26666632 11 111 1
Q ss_pred c-----c---ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 62 A-----Y---RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 ~-----~---~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
+ . ..+..+-.+-+.+|.++.-|+.++ ++.++-+++.++..+.|+++
T Consensus 215 ~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~--~~~~~R~~~a~~Y~~~l~~~ 268 (374)
T COG0399 215 RDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLD--EINERRREIAQIYAEALKGL 268 (374)
T ss_pred CCccccceeeecccccCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 1 1 123445567777788888787775 35566667777788888765
No 319
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=93.12 E-value=0.3 Score=39.02 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred ChhhhhCCEEEEcccccccc-----------CCCcch---hhhhcCCCCCCCEEEEchhh---c--cCcccc-cc-cccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGG-----------PCGKFW---CHEHFDLEESPDIVTFSKKM---Q--LGGYFL-KP-EFVP 59 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~G-----------r~G~~~---~~~~~g~~~~pDi~t~gK~l---g--~gG~~~-~~-~~~~ 59 (119)
++|++||+.+|.|=++. +| -.+..- .-+.+. ..|.+ ++|+. + .||++. .+ .+..
T Consensus 198 elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~i~ei~~e~~~---~aD~~-~~S~~Kd~~~~~GG~l~~~d~~l~~ 272 (450)
T TIGR02618 198 ELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKSIAEILKEMMS---YADGC-TMSGKKDCLVNIGGFLCMNDDEMFQ 272 (450)
T ss_pred HHHHHcCCEEEEEccch-hhChhhhhcccccccCCCHHHHHHHHhc---cCcEE-EEeeccCCCCCCceEEEeCCHHHHH
Confidence 48999999999999874 21 111100 011121 26774 44443 2 577777 32 2322
Q ss_pred c----ccc-ceeeccCCCHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800 60 Q----QAY-RVFNTWMGDPG-KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 60 ~----~~~-~~~~T~~~~p~-~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l 109 (119)
. ... .-+-||++=.. .+.+..-+|+-..++...++.....++|.+.|++.
T Consensus 273 k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~ 328 (450)
T TIGR02618 273 SAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA 328 (450)
T ss_pred HHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence 1 111 23456666222 33333334555444556666666788999999887
No 320
>PRK02769 histidine decarboxylase; Provisional
Probab=92.88 E-value=0.74 Score=35.81 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=58.6
Q ss_pred ChhhhhC---CEEEEccccccccCCCcchhhh--hcCCCCCCCEEEEc--hhhc----cCccccccccccc---cccce-
Q psy4800 1 MYEKYHG---SALLIDEVQTGGGPCGKFWCHE--HFDLEESPDIVTFS--KKMQ----LGGYFLKPEFVPQ---QAYRV- 65 (119)
Q Consensus 1 ~l~~~~~---~lli~DEv~tG~Gr~G~~~~~~--~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~~~~---~~~~~- 65 (119)
++|++|| +++.+|=+|.|+ ..- +.-. .+.....+|.++++ |-++ .|.+..++..... ...++
T Consensus 184 ~i~~~~g~~~~~lHVDaA~gg~-~~p--~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~ 260 (380)
T PRK02769 184 EILKKIGIDDYYIHADAALSGM-ILP--FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIG 260 (380)
T ss_pred HHHHHhCCCceEEEEEecccce-eec--ccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccC
Confidence 4789998 699999998763 221 1000 12222237888665 6543 2333333322110 01111
Q ss_pred --eeccCCCH--HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 66 --FNTWMGDP--GKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 --~~T~~~~p--~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
-.|+.|++ .+.+...++|+.+..++ ..++..++.+++.++|++.
T Consensus 261 ~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~ 311 (380)
T PRK02769 261 SRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN 311 (380)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12334433 45667778888886544 4566788889999998764
No 321
>PRK08637 hypothetical protein; Provisional
Probab=92.65 E-value=0.4 Score=36.87 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=12.7
Q ss_pred hCCEEEEccccccc
Q psy4800 6 HGSALLIDEVQTGG 19 (119)
Q Consensus 6 ~~~lli~DEv~tG~ 19 (119)
|++++|.||+...|
T Consensus 183 ~~~~iI~De~Y~~l 196 (388)
T PRK08637 183 TKVVAVVDDAYFGL 196 (388)
T ss_pred CcEEEEecccchhc
Confidence 99999999998765
No 322
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.11 E-value=0.4 Score=37.92 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=15.2
Q ss_pred ChhhhhCCEEEEccccc
Q psy4800 1 MYEKYHGSALLIDEVQT 17 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t 17 (119)
++|++||+++|+|.+|.
T Consensus 173 ~la~~~gi~livD~t~a 189 (433)
T PRK08134 173 AIAHEAGVPLLVDSTFT 189 (433)
T ss_pred HHHHHcCCEEEEECCCc
Confidence 47999999999999984
No 323
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=92.01 E-value=1 Score=39.46 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=25.6
Q ss_pred ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEEEE--chhhc
Q psy4800 1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIVTF--SKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg 47 (119)
++|+++|+++++|=+|. +. +.. .. ..+| .|++++ .|.++
T Consensus 690 ~iah~~Galv~vDgAq~~a~~~l~-~p---~~~G----aD~~~~s~HK~f~ 732 (993)
T PLN02414 690 DIIHDNGGQVYMDGANMNAQVGLT-SP---GFIG----ADVCHLNLHKTFC 732 (993)
T ss_pred HHHHHcCCEEEEEecCHHhccCcC-Cc---cccC----CCEEEecCCccCC
Confidence 47899999999999985 32 111 11 1223 788866 78664
No 324
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=91.57 E-value=0.64 Score=37.00 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=47.2
Q ss_pred ChhhhhCCEEEEccccccccCCC-cch-hhhhcCCC-CCCCEEEEchhhcc---Ccccccc-ccccc-cccceeeccCCC
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCG-KFW-CHEHFDLE-ESPDIVTFSKKMQL---GGYFLKP-EFVPQ-QAYRVFNTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G-~~~-~~~~~g~~-~~pDi~t~gK~lg~---gG~~~~~-~~~~~-~~~~~~~T~~~~ 72 (119)
++|++||+++|=||...=| +.. ..- ....+.-. ...-+-+|||.|.- -||++.. .+... .......+.+.+
T Consensus 254 ~lA~~~~~~IIEDD~y~el-~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s 332 (459)
T COG1167 254 ALAEKYDVLIIEDDYYGEL-RYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPS 332 (459)
T ss_pred HHHHHcCCeEEeeCcchhh-hcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHHhcCCCC
Confidence 4799999999999996534 222 211 11111111 01234499999951 3566543 33321 122233444455
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q psy4800 73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~ 103 (119)
++.-.+... .+.+..+.++++++-+.++
T Consensus 333 ~~~Q~~la~---~l~~G~~~~hl~~lR~~y~ 360 (459)
T COG1167 333 SLSQAALAA---FLLSGHYDRHLRRLRREYA 360 (459)
T ss_pred hHHHHHHHH---HHHcCCHHHHHHHHHHHHH
Confidence 555333322 3333334444444443333
No 325
>PRK15029 arginine decarboxylase; Provisional
Probab=91.10 E-value=0.59 Score=39.69 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=57.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCC-----C-CCCC-EEE--Echhhc--cCcccc--ccc---cccc----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDL-----E-ESPD-IVT--FSKKMQ--LGGYFL--KPE---FVPQ---- 60 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~-----~-~~pD-i~t--~gK~lg--~gG~~~--~~~---~~~~---- 60 (119)
++|.++++.|+|||+|.+.-+....+- .+..+ . ..|| ++| .=|-|+ +-+..+ .+. +...
T Consensus 335 ~~~h~~~~~llvDEAhGah~~F~~~~p-~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~ 413 (755)
T PRK15029 335 DLLEKTSDRLHFDEAWYGYARFNPIYA-DHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ 413 (755)
T ss_pred HHHHhcCCeEEEECccccccccCcccc-ccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHH
Confidence 478999999999999865434444321 11111 1 2378 664 446664 212111 111 2110
Q ss_pred cccceeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhh
Q psy4800 61 QAYRVFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 61 ~~~~~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
.-..+.|| +.+=+-+|..-.+.++++. +++.++..+....||+.++++.
T Consensus 414 ~l~~~qST-SPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 414 AYMMHATT-SPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred HHHHHcCC-CcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 11122344 4444445555555556653 2466777788888999997764
No 326
>KOG0633|consensus
Probab=90.96 E-value=0.65 Score=35.03 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCEEEEccccccccCCCc--chhhhhcCCCCCCCEE---EEchhhccCcc
Q psy4800 7 GSALLIDEVQTGGGPCGK--FWCHEHFDLEESPDIV---TFSKKMQLGGY 51 (119)
Q Consensus 7 ~~lli~DEv~tG~Gr~G~--~~~~~~~g~~~~pDi~---t~gK~lg~gG~ 51 (119)
+.++++||+.--|--.+. .|.-+ | |.++ ||||++|..|+
T Consensus 191 nglVVvDEAYidFsg~~S~~~lV~k-Y-----pNLivlqTlSKsfGLAGi 234 (375)
T KOG0633|consen 191 NGLVVVDEAYIDFSGVESRMKLVKK-Y-----PNLIVLQTLSKSFGLAGI 234 (375)
T ss_pred CcEEEEeeeeEeeccccccchHhHh-C-----CceeehhhhhhhcCccee
Confidence 689999999865411222 22222 2 5555 89999984443
No 327
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=90.77 E-value=0.92 Score=35.61 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg 47 (119)
++|++||++||+|-..+ ..+.++....- .||+ ...|-+|
T Consensus 171 ~iAh~~gvpliVDNT~a------tpyl~rP~~hG--ADIVvHS~TK~ig 211 (426)
T COG2873 171 EIAHRHGVPLIVDNTFA------TPYLCRPIEHG--ADIVVHSATKYIG 211 (426)
T ss_pred HHHHHcCCcEEEecCCC------cceecchhhcC--CCEEEEeeccccc
Confidence 47999999999998743 12333433322 7888 6889986
No 328
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=90.76 E-value=0.65 Score=36.82 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=28.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFL 53 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~ 53 (119)
++|+++|+++|+|.+|. .|.. .-...+| .|++ .+-|-+++ ||+++
T Consensus 179 ~la~~~gi~livD~t~a-~g~~---~~p~~~G----aDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 179 EVAHRNQVPLIVDNTIA-TAAL---VRPLELG----ADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred HHHHHcCCeEEEECCCc-cccc---cChHHhC----CCEEEeeccceecCCCcceeEEEE
Confidence 47999999999999974 2221 1111234 6877 55687752 46555
No 329
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=90.64 E-value=0.36 Score=39.24 Aligned_cols=19 Identities=16% Similarity=-0.029 Sum_probs=15.5
Q ss_pred Chhhhh--CCEEEEccccccc
Q psy4800 1 MYEKYH--GSALLIDEVQTGG 19 (119)
Q Consensus 1 ~l~~~~--~~lli~DEv~tG~ 19 (119)
++|++| ++++|.||+..-|
T Consensus 267 ~ia~~~~~~l~II~DEvY~~f 287 (521)
T TIGR03801 267 DIVANDRPDLMILTDDVYGTF 287 (521)
T ss_pred HHHHhcCCCeEEEECCCchhh
Confidence 368886 9999999997655
No 330
>PLN02724 Molybdenum cofactor sulfurase
Probab=90.21 E-value=1.5 Score=37.47 Aligned_cols=40 Identities=8% Similarity=-0.085 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhh
Q psy4800 71 GDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
.|..++++..++++++.+ +...++.+++.+++.+.|+++.
T Consensus 318 ~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~ 360 (805)
T PLN02724 318 ISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLK 360 (805)
T ss_pred cchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777778888988876 3566788999999999998763
No 331
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=89.73 E-value=1.3 Score=34.80 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=59.4
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc--cccccccccee-eccCCC
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP--EFVPQQAYRVF-NTWMGD 72 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~--~~~~~~~~~~~-~T~~~~ 72 (119)
++|++.|++|++|=+|- |+=-.| .++ -.+ ...|++ |.=|.|. -||+++.. ++...-....| .+ .|+
T Consensus 188 eIad~VGA~L~~DmAHiaGLVA~G---~~p-~P~-~~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin~aVFPg~-qgg 261 (413)
T COG0112 188 EIADEVGAYLMVDMAHVAGLIAGG---VHP-NPL-PHADVVTTTTHKTLRGPRGGIILTNDEELAKKINSAVFPGL-QGG 261 (413)
T ss_pred HHHHHhCceEEehHHHHHHHHhcc---cCC-CCC-CccceEeCCcccCCCCCCceEEEeccHHHHHHhhhhcCCcc-CCC
Confidence 47999999999999984 652222 222 122 237998 6779985 57888754 34332122222 33 444
Q ss_pred HHHHHHHHH--HHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 73 PGKVLLLKG--IIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 73 p~~~a~a~a--~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
|+--..|-. ++....+++ ..+++-+|.+.|.+.|.+.
T Consensus 262 pl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~ 303 (413)
T COG0112 262 PLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER 303 (413)
T ss_pred hHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc
Confidence 543222222 222233333 4567888888888888764
No 332
>KOG0256|consensus
Probab=89.59 E-value=1.6 Score=34.64 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=30.3
Q ss_pred hhhhhCCEEEEcccccc--ccCCCcchhhhhc-CCCCCCC---EE-EEchhhccCccc
Q psy4800 2 YEKYHGSALLIDEVQTG--GGPCGKFWCHEHF-DLEESPD---IV-TFSKKMQLGGYF 52 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG--~Gr~G~~~~~~~~-g~~~~pD---i~-t~gK~lg~gG~~ 52 (119)
.+.++++-+|+|||..| |+..+-.-..+.. .....|| |+ .+||=+|.-|+=
T Consensus 254 Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfR 311 (471)
T KOG0256|consen 254 FASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFR 311 (471)
T ss_pred HHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceE
Confidence 46789999999999987 5554321111211 1111255 33 899999744543
No 333
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=88.78 E-value=0.32 Score=37.98 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=47.5
Q ss_pred ChhhhhC-CEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c--ccccc---ccccee
Q psy4800 1 MYEKYHG-SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P--EFVPQ---QAYRVF 66 (119)
Q Consensus 1 ~l~~~~~-~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~--~~~~~---~~~~~~ 66 (119)
++|+++| +++|+|..... ...++.+..- .||+ ...|-+++ +|.++. + .+.+. .....+
T Consensus 164 ~~a~~~g~~~~vVDnT~at------p~~~~pL~~G--aDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G 235 (386)
T PF01053_consen 164 KLAKEHGDILVVVDNTFAT------PYNQNPLELG--ADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLG 235 (386)
T ss_dssp HHHHHTTT-EEEEECTTTH------TTTC-GGGGT---SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCceEEeeccccc------eeeeccCcCC--ceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcC
Confidence 4789998 99999997421 1122222222 6877 67888841 344442 1 22221 111111
Q ss_pred eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
. ..+|..+-..+..|+-+. -+.++..++...+.+.|++
T Consensus 236 ~--~~~p~da~ll~rgl~Tl~--~R~~~~~~nA~~lA~~L~~ 273 (386)
T PF01053_consen 236 A--TLSPFDAWLLLRGLRTLP--LRMERQNENAEALAEFLEE 273 (386)
T ss_dssp ---B--HHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred c--cchHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 2 235555554444444332 3446667777777777765
No 334
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=88.65 E-value=2.6 Score=32.25 Aligned_cols=100 Identities=6% Similarity=-0.042 Sum_probs=54.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cCccc-cccccc----ccccc--------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LGGYF-LKPEFV----PQQAY-------- 63 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~gG~~-~~~~~~----~~~~~-------- 63 (119)
++++.|++++++|=+++ +|-. ..-.+ ..|+++ --|++| +-|++ .++... +..+.
T Consensus 149 ~l~~~~~~l~iVDavss-~g~~--~id~~------~~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T TIGR01364 149 ELPDVKNAPLVADMSSN-ILSR--PIDVS------KFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHA 219 (349)
T ss_pred eecccCCCeEEEEcccc-ccCc--cCCHH------HccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHH
Confidence 46788999999999975 4211 11111 134553 347765 22332 222211 11000
Q ss_pred ceeecc-CCCHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhh
Q psy4800 64 RVFNTW-MGDPGKVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 64 ~~~~T~-~~~p~~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l 109 (119)
....++ ..|-..+.+..++|+++.++ + +.++.+++.+++++.|+++
T Consensus 220 ~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~ 270 (349)
T TIGR01364 220 ENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS 270 (349)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 001233 23444666677899998765 3 4456677888888888776
No 335
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=88.50 E-value=3.2 Score=33.77 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=54.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcc-ccccc-ccc---ccccce-----
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGY-FLKPE-FVP---QQAYRV----- 65 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~-~~~~~-~~~---~~~~~~----- 65 (119)
++|++||+++.+|=++.|.-..-.-.-....+++ ..|.++++ |.+. +.|+ ..++. +.+ ....+.
T Consensus 289 ~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle-~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~ 367 (522)
T TIGR03799 289 DIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIE-RADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGS 367 (522)
T ss_pred HHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCch-hCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCC
Confidence 4799999999999997653111111111123442 47988765 7553 2233 33321 111 000010
Q ss_pred ----eeccCCC-HHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 66 ----FNTWMGD-PGKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ----~~T~~~~-p~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
..|+.+. |.......++|+.+...+ ..++..++.++|.+.|++.
T Consensus 368 ~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~ 419 (522)
T TIGR03799 368 KDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ 419 (522)
T ss_pred CccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 0122222 222224667788876543 4455667777777777653
No 336
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=88.25 E-value=0.51 Score=37.12 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=51.8
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-----cCccccc-c-cccccc---ccceeec
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-----LGGYFLK-P-EFVPQQ---AYRVFNT 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-----~gG~~~~-~-~~~~~~---~~~~~~T 68 (119)
++++++|+++|+|.... ++. .++.+..- .||+ ...|=++ .+|+++. . .+.+.. ......+
T Consensus 173 ~~A~~~g~~vvVDNTfa----tP~--~q~PL~~G--aDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~ 244 (396)
T COG0626 173 RLAKAYGALVVVDNTFA----TPV--LQRPLELG--ADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA 244 (396)
T ss_pred HHHHhcCCEEEEECCcc----ccc--ccChhhcC--CCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence 47899999999999742 221 12222222 7888 6778885 2354442 2 222211 1111222
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
...|..+=..+..|+-+. -..++..+++..+.+.|++
T Consensus 245 -~l~p~dA~l~lRGlkTL~--~Rm~~~~~nA~~IA~~L~~ 281 (396)
T COG0626 245 -VLSPFDAWLLLRGLRTLA--LRMERHNENALKIAEFLAD 281 (396)
T ss_pred -CCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHhc
Confidence 355666554444444442 2345666777776666665
No 337
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=88.14 E-value=2 Score=33.11 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhh
Q psy4800 75 KVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 75 ~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l 109 (119)
+..+..++|+.+.+. . ..+|.+++.+++++.|+++
T Consensus 253 ~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~ 291 (378)
T PRK03080 253 TVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKT 291 (378)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 445557899998764 3 4456777888888887765
No 338
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=87.94 E-value=2.3 Score=33.16 Aligned_cols=100 Identities=12% Similarity=-0.029 Sum_probs=54.9
Q ss_pred hhhh-hCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc-cCccc--c-ccc-c---cccc------c--
Q psy4800 2 YEKY-HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ-LGGYF--L-KPE-F---VPQQ------A-- 62 (119)
Q Consensus 2 l~~~-~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg-~gG~~--~-~~~-~---~~~~------~-- 62 (119)
++++ +++++|+|=+ +.+| |...-.+ ..|++. --|+|+ -+|+. . +++ + .... +
T Consensus 149 i~~~~~~~lliVDav-Ss~g--~~~l~~d------~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~ 219 (374)
T TIGR01365 149 FIPADREGLTICDAT-SAAF--AQDLDYH------KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIF 219 (374)
T ss_pred cccccCCCcEEEEcc-chhc--CCCCChh------HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhh
Confidence 3444 5899999988 6664 2222222 278774 559986 34542 1 211 1 0000 0
Q ss_pred ----------c-ceeeccCCCHH-HHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhhh
Q psy4800 63 ----------Y-RVFNTWMGDPG-KVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 63 ----------~-~~~~T~~~~p~-~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l~ 110 (119)
. .-.+|..-+|+ ..-+.+.+|+.++++ +..+|.+++.+.+++.++++.
T Consensus 220 ~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg 283 (374)
T TIGR01365 220 RLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNN 283 (374)
T ss_pred ccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 01233333333 455566777777653 355667888888888888864
No 339
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=86.62 E-value=0.79 Score=35.90 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=52.9
Q ss_pred hhhhhCCEEEEccccccccCCCc--chhhhhcCCCCCCCEE--EEchhhc-----cCccccccc-------cccccccce
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGK--FWCHEHFDLEESPDIV--TFSKKMQ-----LGGYFLKPE-------FVPQQAYRV 65 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~~g~~~~pDi~--t~gK~lg-----~gG~~~~~~-------~~~~~~~~~ 65 (119)
+.++.+.+-++|=+.-|||.-.. .++...+--..++=++ .|||.+| .|++.+... +...-...+
T Consensus 200 ~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~i 279 (396)
T COG1448 200 LIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAII 279 (396)
T ss_pred HHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHH
Confidence 45788999999999999964322 1122211001113333 6999996 355544211 111112233
Q ss_pred eeccCCCHHH-HHHHHHHHH--HHhh------hcHHHHHHHHHHHHHHHHHhh
Q psy4800 66 FNTWMGDPGK-VLLLKGIID--TIHN------ENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 66 ~~T~~~~p~~-~a~a~a~l~--~i~~------~~~~~~~~~~g~~l~~~L~~l 109 (119)
-++|+.+|.- +++...+|+ .++. ++.++|+.++-+.|.+.|++.
T Consensus 280 R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~ 332 (396)
T COG1448 280 RTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKAL 332 (396)
T ss_pred HhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666653 333333322 1111 134455555555566666654
No 340
>PRK08114 cystathionine beta-lyase; Provisional
Probab=85.63 E-value=1.1 Score=35.20 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=50.6
Q ss_pred ChhhhhC--CEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cccccccc--cceeec
Q psy4800 1 MYEKYHG--SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFVPQQA--YRVFNT 68 (119)
Q Consensus 1 ~l~~~~~--~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~~~~~--~~~~~T 68 (119)
++|++++ +++|+|.++. +|.. ++...+- +|++ ...|.+++ +|++.. +.+..... .....+
T Consensus 171 ~ia~~~g~g~~lvVDnT~a----~p~~--~~pl~~G--aDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~ 242 (395)
T PRK08114 171 AAVRSVNPDAVIMIDNTWA----AGVL--FKALDFG--IDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQ 242 (395)
T ss_pred HHHHHhCCCCEEEEECCCc----cccc--cCHHHcC--CcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccC
Confidence 4688984 9999999974 1222 2222222 7887 57798742 243332 22211100 011122
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
..+|..+-..+..|+-+. -..++..++...+.+.|++
T Consensus 243 -~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~va~~L~~ 279 (395)
T PRK08114 243 -MVDADTAYMTSRGLRTLG--VRLRQHEESSLKVAEWLAE 279 (395)
T ss_pred -CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHc
Confidence 456776665555554432 2345566666666666664
No 341
>KOG1368|consensus
Probab=85.47 E-value=0.31 Score=37.23 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=49.4
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCC-----CCCCEE--EEchhhc--cCccccccc-cccccc---cceee
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE-----ESPDIV--TFSKKMQ--LGGYFLKPE-FVPQQA---YRVFN 67 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~-----~~pDi~--t~gK~lg--~gG~~~~~~-~~~~~~---~~~~~ 67 (119)
+||++||+-|-+|-+.- |-+.-..|+. ...|-+ ||||+|| .|.+++.+. |....+ .-.+.
T Consensus 182 ~lak~~glkLH~DGARi-------~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGG 254 (384)
T KOG1368|consen 182 ALAKRHGLKLHMDGARI-------FNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGG 254 (384)
T ss_pred HHHhccCCeeecchhhh-------hhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHHHhcC
Confidence 47899999998886632 1111122221 125654 9999996 344444432 332211 11122
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108 (119)
Q Consensus 68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~ 108 (119)
-+--.-+-+|+++-+|+.- -..++..++..+.+.+.++.
T Consensus 255 GmRQsGvLaaaaLval~~~--~~~L~~dHk~A~~lAe~~~~ 293 (384)
T KOG1368|consen 255 GMRQSGVLAAAALVALDEN--VPLLRADHKRAKELAEYINT 293 (384)
T ss_pred chhHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHhcc
Confidence 1122334455555555432 12445556666666666653
No 342
>PRK09275 aspartate aminotransferase; Provisional
Probab=85.14 E-value=1.8 Score=35.27 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=14.2
Q ss_pred hhhh--hCCEEEEccccccc
Q psy4800 2 YEKY--HGSALLIDEVQTGG 19 (119)
Q Consensus 2 l~~~--~~~lli~DEv~tG~ 19 (119)
+|++ +++++|.||+..-|
T Consensus 269 ia~~~~~~l~II~DEvY~~f 288 (527)
T PRK09275 269 IVNEKRPDLMIITDDVYGTF 288 (527)
T ss_pred HHHhcCCCcEEEECCCChhh
Confidence 5754 59999999998655
No 343
>PRK12566 glycine dehydrogenase; Provisional
Probab=84.04 E-value=9.5 Score=33.49 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=26.6
Q ss_pred ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc
Q psy4800 1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg 47 (119)
++|+++|+++++|=+|. +.+..... ..+| .|++++. |.++
T Consensus 665 ~iah~~Galv~vDgA~~~a~~~l~~P---g~~G----ADi~~~s~HKtf~ 707 (954)
T PRK12566 665 EVVHQHGGQVYMDGANLNAQVGLARP---ADIG----ADVSHMNLHKTFC 707 (954)
T ss_pred HHHHHcCCEEEEEeeChhhccCCCCh---hhcC----CCEEEecCCcccC
Confidence 46889999999999985 33222211 2233 7998775 9774
No 344
>PLN02880 tyrosine decarboxylase
Probab=80.95 E-value=1.9 Score=34.76 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=27.2
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg 47 (119)
++|++||++|.+|=++.|+-..-..+-+...|++ .+|-++ .=|.+.
T Consensus 263 ~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie-~aDSit~d~HKwl~ 310 (490)
T PLN02880 263 KIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE-EADSFNMNAHKWFL 310 (490)
T ss_pred HHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch-hcCEEEECchhhcC
Confidence 4899999999999776553121111111123542 478764 567763
No 345
>PLN03032 serine decarboxylase; Provisional
Probab=80.62 E-value=9.5 Score=29.73 Aligned_cols=108 Identities=15% Similarity=-0.000 Sum_probs=55.8
Q ss_pred ChhhhhC-----CEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc----cCcccccccccc---cccccee
Q psy4800 1 MYEKYHG-----SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ----LGGYFLKPEFVP---QQAYRVF 66 (119)
Q Consensus 1 ~l~~~~~-----~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~~~---~~~~~~~ 66 (119)
++|++|| ++|.+|=++.|+ ..-..-....+......|.++++ |-+| .|.++.+..... ....+..
T Consensus 185 ~i~~~~g~~~~~~~lHvDaA~gg~-~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~ 263 (374)
T PLN03032 185 RILKELGYTEDRFYIHCDGALFGL-MMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLN 263 (374)
T ss_pred HHHHHhCCCCCCeeEEEEccchhh-hhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccC
Confidence 4788986 589999997653 11000000111111237877654 4432 233333322211 1111111
Q ss_pred ---eccCCCH--HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 67 ---NTWMGDP--GKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 67 ---~T~~~~p--~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
.|..|+. ...+...++|+.+-.++ ..++.-++.++|.++|++.
T Consensus 264 ~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~ 314 (374)
T PLN03032 264 SRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA 314 (374)
T ss_pred CCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2444442 44566677777775544 4556678888999988875
No 346
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=79.56 E-value=15 Score=28.64 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--EchhhccCcccc---cccccc----ccccc--------
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQLGGYFL---KPEFVP----QQAYR-------- 64 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg~gG~~~---~~~~~~----~~~~~-------- 64 (119)
+.+.+++++|+|=+ +.+| +.. ..++ .-|++. -=|+||.-|+.+ ++...+ ..+.+
T Consensus 163 ~~~~~~~llvvD~s-S~~~--s~p-----id~~-~~dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~~~~~ 233 (364)
T PRK12462 163 AAGLPDSPLIADMS-SDFM--SRP-----FDVE-AYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVE 233 (364)
T ss_pred ccccCCCeEEEEcC-chhh--CCC-----CChH-HccEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHHHHHh
Confidence 34557899999977 5552 222 2332 137664 347775223221 222111 00110
Q ss_pred eeeccCCCHH-HHHHHHHHHHHHhhh--c---HHHHHHHHHHHHHHHHHhhh
Q psy4800 65 VFNTWMGDPG-KVLLLKGIIDTIHNE--N---LLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 65 ~~~T~~~~p~-~~a~a~a~l~~i~~~--~---~~~~~~~~g~~l~~~L~~l~ 110 (119)
..+++.-+|+ ..-+...+|+.|.++ + +.++-++.++.+++.+.+..
T Consensus 234 ~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~ 285 (364)
T PRK12462 234 HRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALN 285 (364)
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1245433444 666778899999766 3 44556677777777776653
No 347
>KOG0634|consensus
Probab=76.52 E-value=12 Score=30.03 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=49.7
Q ss_pred ChhhhhCCEEEEccccccccCCCc---------------chhh----hhcCCCCCCCEE---EEchhhccC---cccccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGK---------------FWCH----EHFDLEESPDIV---TFSKKMQLG---GYFLKP 55 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~---------------~~~~----~~~g~~~~pDi~---t~gK~lg~g---G~~~~~ 55 (119)
+|++|||+++|-||+.- |=..+. .+.. ...+++..-.++ +|||-++-| |+..+.
T Consensus 231 ~LArKyDfLIVeDdpYy-~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~ 309 (472)
T KOG0634|consen 231 QLARKYDFLIVEDDPYY-FLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGN 309 (472)
T ss_pred HHHHHcCEEEEecCccc-eeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecC
Confidence 48999999999999963 212221 1110 001111012233 899988422 444433
Q ss_pred c-cccc-cccceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHH
Q psy4800 56 E-FVPQ-QAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKT 98 (119)
Q Consensus 56 ~-~~~~-~~~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~ 98 (119)
. +... -...-.+|-+.+-++-....+.|+..-++++++.+.++
T Consensus 310 ~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l 354 (472)
T KOG0634|consen 310 SLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHL 354 (472)
T ss_pred HHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2211 11112344445556666777778877776655555444
No 348
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=74.63 E-value=26 Score=26.84 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=27.0
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg 47 (119)
++|++||+.|++.=+.| +||+--. +-+..+|+++=| |+|+
T Consensus 180 ~ic~e~gvPlllN~AYt-~Grmpvs------~ke~g~DFiVgSGHKsmA 221 (382)
T COG1103 180 KICREYGVPLLLNCAYT-VGRMPVS------GKEIGADFIVGSGHKSMA 221 (382)
T ss_pred HHHHHcCCceEeeccee-ecccccc------ccccCCCEEEecCccchh
Confidence 47999999999998766 5555321 222338988644 7774
No 349
>KOG2467|consensus
Probab=73.89 E-value=11 Score=29.82 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=55.8
Q ss_pred ChhhhhCCEEEEcccc-ccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc------------c-ccccc-
Q psy4800 1 MYEKYHGSALLIDEVQ-TGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP------------E-FVPQQ- 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~-tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~------------~-~~~~~- 61 (119)
++|++.|++|++|=+| +|+=..|. ....+. ..||+ |.=|+|- -||++.-. . +.+..
T Consensus 211 ~Iad~~gA~Lm~DMAHISgLVAA~v--ipsPFe---y~DiVTTTTHKsLRGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~ 285 (477)
T KOG2467|consen 211 KIADKVGAYLMADMAHISGLVAAGV--IPSPFE---YCDIVTTTTHKSLRGPRGAMIFYRKGVKSIKPKQGKEILYDLED 285 (477)
T ss_pred HHHHhcCceeehhhhhHHHHHhccc--CCCccc---ccceeeccccccccCCcceeEEEeccCCcCCCCCCCcceechhh
Confidence 4799999999999998 46512221 111111 26888 6789984 35665411 1 11100
Q ss_pred --ccceeecc-CC-CHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800 62 --AYRVFNTW-MG-DPGKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 62 --~~~~~~T~-~~-~p~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l 109 (119)
....|-.. +| +--..++..-+|+...+++ .+.++.++.+.|.+.|.+.
T Consensus 286 kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~ 340 (477)
T KOG2467|consen 286 KINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR 340 (477)
T ss_pred hhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00111111 11 2223333334455555554 4567889999999888775
No 350
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=72.20 E-value=26 Score=30.81 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=54.6
Q ss_pred ChhhhhCCEEEEcccccc-ccCCCcchhhhhcCCCCCCCEEEE--chhhc----cC----cccc-cccccccc-------
Q psy4800 1 MYEKYHGSALLIDEVQTG-GGPCGKFWCHEHFDLEESPDIVTF--SKKMQ----LG----GYFL-KPEFVPQQ------- 61 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG-~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg----~g----G~~~-~~~~~~~~------- 61 (119)
++|+++|.++++|=++.. .+..-.. ..+| .|++++ .|+++ +| |++. ++.+....
T Consensus 652 ~iah~~G~~v~VDgAq~~al~~l~~P---g~~G----aDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~ 724 (939)
T TIGR00461 652 DIVHSFGGQVYLDGANMNAQVGLTSP---GDLG----ADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVS 724 (939)
T ss_pred HHHHHcCCEEEEEecChhhCCCCCCc---cccC----CCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccc
Confidence 478999999999999853 3211111 1122 799977 59774 12 2222 11111110
Q ss_pred ------cc----ceeeccCCCHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHHHHh
Q psy4800 62 ------AY----RVFNTWMGDPGKVLLLKGIIDTIHNENLLD---RVQKTGDILLNVRLG 108 (119)
Q Consensus 62 ------~~----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~---~~~~~g~~l~~~L~~ 108 (119)
+. ...+.+.++.+.+..+..-|..+=.+.+.+ ..-.+.+|+.++|++
T Consensus 725 t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~ 784 (939)
T TIGR00461 725 MITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD 784 (939)
T ss_pred cccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01 111224555555555666666664444433 344678899988876
No 351
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=69.41 E-value=20 Score=27.77 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=14.0
Q ss_pred ChhhhhCCEEEEcccc
Q psy4800 1 MYEKYHGSALLIDEVQ 16 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~ 16 (119)
+|+++||+.||+|.+.
T Consensus 206 alA~~~giPliIDnAY 221 (417)
T COG3977 206 ALARQHGIPLIIDNAY 221 (417)
T ss_pred HHhhhcCCcEEEeccc
Confidence 3789999999999984
No 352
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=67.92 E-value=45 Score=26.84 Aligned_cols=105 Identities=20% Similarity=0.116 Sum_probs=54.1
Q ss_pred ChhhhhCCEEEEccccccccC-CCcchhhh-hcCCCCCCCEEEEc--hhh----ccCccccccc--ccc-------cccc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGP-CGKFWCHE-HFDLEESPDIVTFS--KKM----QLGGYFLKPE--FVP-------QQAY 63 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr-~G~~~~~~-~~g~~~~pDi~t~g--K~l----g~gG~~~~~~--~~~-------~~~~ 63 (119)
++|++|++++.+|=+..||=. .-.. ..+ .++++ ..|=+++. |-+ |+|.+..++. +.. ..+.
T Consensus 231 ~ia~~~~i~lHVDAA~GG~~~pf~~~-~~~~~f~l~-~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~ 308 (460)
T COG0076 231 DIAEEYGIWLHVDAAFGGFLLPFLEP-DGRWDFGLE-GVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPG 308 (460)
T ss_pred HHHHHcCCcEEEEccccceeecccCc-cchhhcCCC-CceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCC
Confidence 479999999999998766411 1110 001 13442 35555432 332 1333333322 211 1111
Q ss_pred ------ceeeccCCCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHhh
Q psy4800 64 ------RVFNTWMGDPGKVLLLKGIIDTIHNENL---LDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 64 ------~~~~T~~~~p~~~a~a~a~l~~i~~~~~---~~~~~~~g~~l~~~L~~l 109 (119)
-+.+|-.+ ...++..++++.+-.++. .++.-++.++|.+.|+++
T Consensus 309 ~~~~~~ti~~sr~~--~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~ 361 (460)
T COG0076 309 GGIPNFTILGSRPG--RQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL 361 (460)
T ss_pred CCcCceeEeeccch--HHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11122222 255666777888754444 445558888888888876
No 353
>PLN02452 phosphoserine transaminase
Probab=63.98 E-value=45 Score=25.86 Aligned_cols=96 Identities=7% Similarity=-0.020 Sum_probs=53.6
Q ss_pred CCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccC--cc-cccccccc----cccc--------ceeeccC-
Q psy4800 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG--GY-FLKPEFVP----QQAY--------RVFNTWM- 70 (119)
Q Consensus 7 ~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~g--G~-~~~~~~~~----~~~~--------~~~~T~~- 70 (119)
++++|+|=+++ +| +...-.+.++ .|+..-=|.+|-- |+ ++++.+.. ..+. ...+++.
T Consensus 170 ~~~lvVDa~Ss-~g--~~pidv~~~~----v~~~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T 242 (365)
T PLN02452 170 NVPLVADMSSN-FL--SKPVDVSKYG----VIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT 242 (365)
T ss_pred CCeEEEECCcc-cc--CcccCHHHcC----EEEEecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence 47999998865 42 2233334444 3556667777511 22 22222211 0010 1123433
Q ss_pred CCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l 109 (119)
.|-..+.+..++|+.++++ .+.++-+++.+++++.|++.
T Consensus 243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~ 285 (365)
T PLN02452 243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDES 285 (365)
T ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444677778899999764 35566778888888888763
No 354
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=61.56 E-value=4.6 Score=26.82 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=11.0
Q ss_pred hCCEEEEccccccc
Q psy4800 6 HGSALLIDEVQTGG 19 (119)
Q Consensus 6 ~~~lli~DEv~tG~ 19 (119)
...++|+||+|...
T Consensus 146 ~~~~vI~DEaH~~~ 159 (184)
T PF04851_consen 146 KFDLVIIDEAHHYP 159 (184)
T ss_dssp SESEEEEETGGCTH
T ss_pred cCCEEEEehhhhcC
Confidence 34689999999754
No 355
>PRK13578 ornithine decarboxylase; Provisional
Probab=60.82 E-value=22 Score=30.29 Aligned_cols=18 Identities=22% Similarity=0.045 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHHHHH
Q psy4800 90 NLLDRVQKTGDILLNVRL 107 (119)
Q Consensus 90 ~~~~~~~~~g~~l~~~L~ 107 (119)
.+.++..+.+..||+.+.
T Consensus 419 ~l~~~~i~~a~~~R~~l~ 436 (720)
T PRK13578 419 RLWMECVKLGIEARKLIL 436 (720)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566777788888888883
No 356
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=59.03 E-value=30 Score=29.49 Aligned_cols=44 Identities=11% Similarity=0.005 Sum_probs=27.0
Q ss_pred eeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhh
Q psy4800 66 FNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 66 ~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
.|| +.+=+-+|..-.+.++++. +++.++..+.+..||+.++++.
T Consensus 397 ~ST-SPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~ 443 (713)
T PRK15399 397 TST-SPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLR 443 (713)
T ss_pred cCC-CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 344 4333344444455555653 3566778888888999887764
No 357
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=58.61 E-value=17 Score=25.21 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=24.3
Q ss_pred cCccccccccccccccceeeccCCCH-----HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q psy4800 48 LGGYFLKPEFVPQQAYRVFNTWMGDP-----GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVR 106 (119)
Q Consensus 48 ~gG~~~~~~~~~~~~~~~~~T~~~~p-----~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L 106 (119)
.||.|..-.+.+...+++.+||-..+ .+....+..+..+-+++ ++++.+.++.+.+.|
T Consensus 100 ~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~-~~~~~~~a~~i~~~l 162 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKEN-REQVEESADEILEAL 162 (163)
T ss_dssp ---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHS-HHHHHHHHHHT-SHH
T ss_pred CCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHC-HHHHHHHHHHHHHhh
Confidence 57887766666665666667765432 23333333333222222 455666665555444
No 358
>KOG0053|consensus
Probab=57.93 E-value=8.4 Score=30.56 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=26.1
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg 47 (119)
++|+++|+++|+|+...+ +-.++-..+- .||+ ...|-++
T Consensus 186 ~la~~~g~~vvVDnTf~~------p~~~~pL~lG--ADIV~hSaTKyi~ 226 (409)
T KOG0053|consen 186 RLAHKYGFLVVVDNTFGS------PYNQDPLPLG--ADIVVHSATKYIG 226 (409)
T ss_pred HHHhhCCCEEEEeCCcCc------ccccChhhcC--CCEEEEeeeeeec
Confidence 479999999999997432 1122223332 7998 5778885
No 359
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=57.48 E-value=14 Score=28.59 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=13.8
Q ss_pred ChhhhhCCEEEEcccc
Q psy4800 1 MYEKYHGSALLIDEVQ 16 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~ 16 (119)
++|++||+.|-+|=+.
T Consensus 157 ~~~k~~~l~LHmDGAR 172 (342)
T COG2008 157 AVCKEHGLPLHMDGAR 172 (342)
T ss_pred HHHHHhCCceeechHH
Confidence 4799999999999764
No 360
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=53.22 E-value=48 Score=25.45 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800 71 GDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 71 ~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l 109 (119)
.|-..+.+..++|+++.++ +..++.+++.+++++.|+++
T Consensus 239 p~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~ 281 (360)
T PRK05355 239 PPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS 281 (360)
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444666677899998765 35566778888888888875
No 361
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=52.16 E-value=9.8 Score=26.46 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=11.1
Q ss_pred hCCEEEEccccccc
Q psy4800 6 HGSALLIDEVQTGG 19 (119)
Q Consensus 6 ~~~lli~DEv~tG~ 19 (119)
.|.++|+||+|.-|
T Consensus 79 ~~~liviDEa~~~~ 92 (193)
T PF05707_consen 79 KGSLIVIDEAQNFF 92 (193)
T ss_dssp TT-EEEETTGGGTS
T ss_pred CCcEEEEECChhhc
Confidence 68999999999744
No 362
>KOG1549|consensus
Probab=49.43 E-value=74 Score=25.54 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=25.5
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ 47 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg 47 (119)
++|+++++.+.+|=+|. .|.. . .+-..+. +|+++++ |.+|
T Consensus 205 ~icr~~~v~v~~DaAQa-vG~i--~--vDV~eln--~D~~s~s~HK~yg 246 (428)
T KOG1549|consen 205 KICREEGVQVHVDAAQA-VGKI--P--VDVQELN--ADFLSISAHKIYG 246 (428)
T ss_pred HHhCcCCcEEEeehhhh-cCCc--c--ccHHHcC--chheeeecccccC
Confidence 37999999999999974 4333 1 1222333 7877543 6665
No 363
>KOG0259|consensus
Probab=49.22 E-value=8.3 Score=30.58 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=15.0
Q ss_pred ChhhhhCCEEEEccccc
Q psy4800 1 MYEKYHGSALLIDEVQT 17 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~t 17 (119)
++|+|+++++|.|||..
T Consensus 226 e~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 226 ETAKKLGIMVIADEVYG 242 (447)
T ss_pred HHHHHhCCeEEehhhcc
Confidence 47899999999999964
No 364
>KOG0352|consensus
Probab=48.47 E-value=7.7 Score=31.42 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=21.0
Q ss_pred CEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cCccc
Q psy4800 8 SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LGGYF 52 (119)
Q Consensus 8 ~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~gG~~ 52 (119)
..+++||+|| . .- +|.+..||.+++|--=. .++++
T Consensus 143 ~Y~vVDEAHC-V----SQ-----WGHDFRPDYL~LG~LRS~~~~vp 178 (641)
T KOG0352|consen 143 RYIVVDEAHC-V----SQ-----WGHDFRPDYLTLGSLRSVCPGVP 178 (641)
T ss_pred eeEEechhhh-H----hh-----hccccCcchhhhhhHHhhCCCCc
Confidence 4689999987 2 11 23333499998875321 35554
No 365
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=48.45 E-value=89 Score=24.21 Aligned_cols=108 Identities=18% Similarity=0.063 Sum_probs=52.3
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc---cCcccc-ccc--ccc---cccc------
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ---LGGYFL-KPE--FVP---QQAY------ 63 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg---~gG~~~-~~~--~~~---~~~~------ 63 (119)
++|++|+++|-+|=+..|.-..-...-.-..+++ ..|=++ .-|.++ ..|++. ++. +.. ..+.
T Consensus 218 ~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~-~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~ 296 (373)
T PF00282_consen 218 DICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIE-RADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDD 296 (373)
T ss_dssp HHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGG-GESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred hhccccceeeeecccccccccccccccccccccc-cccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccc
Confidence 4799999999999886652111111111123443 356553 456663 223322 211 110 0000
Q ss_pred --------ceeeccCC-CHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHHHHhh
Q psy4800 64 --------RVFNTWMG-DPGKVLLLKGIIDTIHNENLL---DRVQKTGDILLNVRLGL 109 (119)
Q Consensus 64 --------~~~~T~~~-~p~~~a~a~a~l~~i~~~~~~---~~~~~~g~~l~~~L~~l 109 (119)
....|..+ -.........+|+.+=.+.+. ++.-++.++|.++|++.
T Consensus 297 ~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~ 354 (373)
T PF00282_consen 297 RESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKD 354 (373)
T ss_dssp SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11123333 244455556667666555444 44557777777777764
No 366
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=47.22 E-value=9 Score=23.60 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.6
Q ss_pred hCCEEEEccccc
Q psy4800 6 HGSALLIDEVQT 17 (119)
Q Consensus 6 ~~~lli~DEv~t 17 (119)
..-++|+||+|.
T Consensus 103 ~~~~iiiDE~h~ 114 (144)
T cd00046 103 KLDLLILDEAHR 114 (144)
T ss_pred cCCEEEEeCHHH
Confidence 355799999986
No 367
>PLN02590 probable tyrosine decarboxylase
Probab=46.97 E-value=1.6e+02 Score=24.33 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=26.9
Q ss_pred ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhh
Q psy4800 1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKM 46 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~l 46 (119)
++|++||++|-||=+..|+-..-...-.-..|++ ..|=++ .=|.+
T Consensus 311 ~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie-~ADSit~D~HK~l 357 (539)
T PLN02590 311 NIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE-NADSFNMNAHKWL 357 (539)
T ss_pred HHHHHhCCeEEEecchhhhhhcChhhHHHhcCCc-cCCEEEECchhhc
Confidence 4899999999999887665322221111123553 467553 45666
No 368
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=46.14 E-value=10 Score=30.14 Aligned_cols=13 Identities=23% Similarity=0.186 Sum_probs=10.5
Q ss_pred CCEEEEccccccc
Q psy4800 7 GSALLIDEVQTGG 19 (119)
Q Consensus 7 ~~lli~DEv~tG~ 19 (119)
--++|+||+|+.-
T Consensus 147 ~~liI~DE~Hh~~ 159 (442)
T COG1061 147 FGLIIFDEVHHLP 159 (442)
T ss_pred cCEEEEEccccCC
Confidence 4689999999843
No 369
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=44.99 E-value=5.5 Score=29.88 Aligned_cols=106 Identities=17% Similarity=0.087 Sum_probs=49.9
Q ss_pred ChhhhhCCEEEEcccccc--ccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccccc---ccceeec--
Q psy4800 1 MYEKYHGSALLIDEVQTG--GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVPQQ---AYRVFNT-- 68 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~tG--~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~~~---~~~~~~T-- 68 (119)
++|++||+.|.+|=+.-. .--.|.- ..+.. ...|++ .+.|.++ .|++++.+ .+.... +...++.
T Consensus 152 ~~a~~~gl~lhmDGARl~~a~~~~~~~-~~e~~---~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~~~~k~~gg~~~ 227 (290)
T PF01212_consen 152 ELAREHGLPLHMDGARLANAAAALGVS-LAEIA---AGADSVSFGGTKNGGAPGGAVLAGNKEFIAKARRQRKRLGGGMR 227 (290)
T ss_dssp HHHHHHT-EEEEEETTHHHHHCHHHHH-HHHHH---TTSSEEEEETTSTT-SSSEEEEEESHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhCceEEEEehhhHHHhhhccccc-HHHHh---hhCCEEEEEEEcccccccceEEEechHHHHHHHHHHHHhccCee
Confidence 479999999999977321 1001111 11222 237987 6678776 45555532 222211 1111111
Q ss_pred cCCCHHHHHH-HHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhh
Q psy4800 69 WMGDPGKVLL-LKGIIDTIHNE-NLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 69 ~~~~p~~~a~-a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l~ 110 (119)
-.|-+.++.. -...+..++.. ....+..++.++|.+.|+.+.
T Consensus 228 ~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~ 271 (290)
T PF01212_consen 228 QAGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEALG 271 (290)
T ss_dssp HTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEEC
T ss_pred ecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 1232222000 11233333322 344567788888888888764
No 370
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=44.08 E-value=46 Score=28.44 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=27.6
Q ss_pred eeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhh
Q psy4800 65 VFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 65 ~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
+.|| +.+=+-+|..-.+..+++. +.+.++..+.+..||+.+.++.
T Consensus 396 ~~ST-SPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~ 443 (714)
T PRK15400 396 HTTT-SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR 443 (714)
T ss_pred HcCC-CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344 4433444444455556653 3566778888888999887764
No 371
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=41.44 E-value=13 Score=26.58 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=8.7
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
+.++|+||+|-
T Consensus 120 ~~~iIvDEaQN 130 (205)
T PF02562_consen 120 NAFIIVDEAQN 130 (205)
T ss_dssp SEEEEE-SGGG
T ss_pred ceEEEEecccC
Confidence 68999999994
No 372
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=40.64 E-value=14 Score=26.58 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=12.1
Q ss_pred ChhhhhCCEEEEcc
Q psy4800 1 MYEKYHGSALLIDE 14 (119)
Q Consensus 1 ~l~~~~~~lli~DE 14 (119)
++|++|++.||+++
T Consensus 59 ~lc~~~~v~liINd 72 (211)
T COG0352 59 ALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHhCCeEEecC
Confidence 48999999999875
No 373
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=40.00 E-value=12 Score=24.60 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=9.0
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
--++|+||+|.
T Consensus 120 ~~~iViDE~h~ 130 (169)
T PF00270_consen 120 LSLIVIDEAHH 130 (169)
T ss_dssp ESEEEEETHHH
T ss_pred ceeeccCcccc
Confidence 35789999996
No 374
>PF02078 Synapsin: Synapsin, N-terminal domain; InterPro: IPR020897 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents the pre-ATP-grasp structural domain found in synapsins, which precedes the ATP-grasp domain. The structure of the pre-ATP-grasp domain consists of alpha/beta/alpha in three layers, and is possibly a rudiment form of the Rossmann-fold. This domain can have a substrate-binding function.; GO: 0007269 neurotransmitter secretion, 0008021 synaptic vesicle; PDB: 1PX2_A 1PK8_F 2P0A_A 1AUV_B 1AUX_A 1I7N_A 1I7L_A.
Probab=39.90 E-value=12 Score=24.08 Aligned_cols=16 Identities=31% Similarity=0.381 Sum_probs=10.3
Q ss_pred hhhhCCEEEEcccccc
Q psy4800 3 EKYHGSALLIDEVQTG 18 (119)
Q Consensus 3 ~~~~~~lli~DEv~tG 18 (119)
.++..+||++||-||-
T Consensus 3 ~~~~k~LLVIdd~~tD 18 (105)
T PF02078_consen 3 KDKCKTLLVIDDPQTD 18 (105)
T ss_dssp ---EEEEEEES-TTS-
T ss_pred cccceEEEEECCCCcc
Confidence 4677899999999984
No 375
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=14 Score=31.75 Aligned_cols=16 Identities=44% Similarity=0.775 Sum_probs=12.9
Q ss_pred CCEEEEccccc--cccCC
Q psy4800 7 GSALLIDEVQT--GGGPC 22 (119)
Q Consensus 7 ~~lli~DEv~t--G~Gr~ 22 (119)
+++|.+||+|| |-|.+
T Consensus 263 ~vILFIDEiHtiVGAG~~ 280 (786)
T COG0542 263 NVILFIDEIHTIVGAGAT 280 (786)
T ss_pred CeEEEEechhhhcCCCcc
Confidence 89999999998 55444
No 376
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=39.06 E-value=55 Score=25.91 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=11.9
Q ss_pred ChhhhhCCEEEEcccc
Q psy4800 1 MYEKYHGSALLIDEVQ 16 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~ 16 (119)
++|++||+..|+.-+.
T Consensus 179 kiC~~~~IPhlvNnAY 194 (389)
T PF05889_consen 179 KICKEYDIPHLVNNAY 194 (389)
T ss_dssp HHHHHHT--EEEEGTT
T ss_pred HHHHHcCCceEEccch
Confidence 4899999999999773
No 377
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=37.99 E-value=15 Score=23.13 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=10.1
Q ss_pred hhCC-EEEEccccc
Q psy4800 5 YHGS-ALLIDEVQT 17 (119)
Q Consensus 5 ~~~~-lli~DEv~t 17 (119)
+++. ++|+||+|.
T Consensus 85 ~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 85 RRRVVLLVIDEADH 98 (131)
T ss_dssp HCTEEEEEEETTHH
T ss_pred hcCCeEEEEeChHh
Confidence 3444 999999987
No 378
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=36.74 E-value=13 Score=28.01 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=9.0
Q ss_pred cccCCCcchhhh
Q psy4800 18 GGGPCGKFWCHE 29 (119)
Q Consensus 18 G~Gr~G~~~~~~ 29 (119)
|.||||.+-+..
T Consensus 228 GvGRTGTFIalD 239 (302)
T COG5599 228 GVGRTGTFIALD 239 (302)
T ss_pred CCCCcceeeeHH
Confidence 899999875544
No 379
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=36.16 E-value=19 Score=26.85 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=9.2
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
+.++|+||+|.
T Consensus 237 ~~~lIiDEAHn 247 (289)
T smart00489 237 DSIVIFDEAHN 247 (289)
T ss_pred ccEEEEeCccC
Confidence 57899999975
No 380
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=36.16 E-value=19 Score=26.85 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=9.2
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
+.++|+||+|.
T Consensus 237 ~~~lIiDEAHn 247 (289)
T smart00488 237 DSIVIFDEAHN 247 (289)
T ss_pred ccEEEEeCccC
Confidence 57899999975
No 381
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=34.37 E-value=1.3e+02 Score=20.38 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhh
Q psy4800 78 LLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 78 ~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l~ 110 (119)
-++-+|+-++++ +.+.+..+.++.+.+.|.+++
T Consensus 52 dALLALQ~vdd~~eRRrRav~Rg~~~LD~Ld~Lk 85 (138)
T PRK12787 52 DALLALQGVEDPTERRRRSVRRGETALDVLDELK 85 (138)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555543 456677888888888888774
No 382
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=33.74 E-value=18 Score=23.71 Aligned_cols=9 Identities=22% Similarity=0.578 Sum_probs=8.1
Q ss_pred EEEEccccc
Q psy4800 9 ALLIDEVQT 17 (119)
Q Consensus 9 lli~DEv~t 17 (119)
++|+||+|.
T Consensus 132 ~iIiDE~h~ 140 (201)
T smart00487 132 LVILDEAHR 140 (201)
T ss_pred EEEEECHHH
Confidence 789999986
No 383
>PF13173 AAA_14: AAA domain
Probab=33.61 E-value=21 Score=22.81 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=10.0
Q ss_pred hCCEEEEccccc
Q psy4800 6 HGSALLIDEVQT 17 (119)
Q Consensus 6 ~~~lli~DEv~t 17 (119)
...++++||+|.
T Consensus 61 ~~~~i~iDEiq~ 72 (128)
T PF13173_consen 61 GKKYIFIDEIQY 72 (128)
T ss_pred CCcEEEEehhhh
Confidence 468899999984
No 384
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=32.06 E-value=1.7e+02 Score=21.13 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHH----------------------HHHhhhhcCCCCCC
Q psy4800 77 LLLKGIIDTIHNENLLDRVQKTGDILLN----------------------VRLGLGQESNLQPS 118 (119)
Q Consensus 77 a~a~a~l~~i~~~~~~~~~~~~g~~l~~----------------------~L~~l~~~~p~i~~ 118 (119)
-=+.++++.|++.+...-..++|+.|.+ .-.++..+||+|+.
T Consensus 34 EE~yEv~dAI~~~d~~~l~EELGDlLlqVvfha~iaee~g~F~~~DV~~~i~~KlirRHPHVFg 97 (204)
T PRK12333 34 EEAAEAVDALSEGDPQELAEELGDVLLQVAFHSVIAEEEGRFTYPDVERGIVEKLIRRHPHVFG 97 (204)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccCC
Confidence 3355566666655544444555555443 23445678898875
No 385
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=31.31 E-value=39 Score=24.30 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=14.2
Q ss_pred ChhhhhCCEEEEcccc
Q psy4800 1 MYEKYHGSALLIDEVQ 16 (119)
Q Consensus 1 ~l~~~~~~lli~DEv~ 16 (119)
+++..|+-+|.+||+-
T Consensus 101 eislAh~GVLflDE~~ 116 (206)
T PF01078_consen 101 EISLAHRGVLFLDELN 116 (206)
T ss_dssp CGGGGTTSEEEECETT
T ss_pred HHHHhcCCEEEechhh
Confidence 5788999999999994
No 386
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.78 E-value=26 Score=29.50 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=9.6
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
+.++|+||+|-
T Consensus 221 ~~ivI~DEAHN 231 (705)
T TIGR00604 221 DSIVIFDEAHN 231 (705)
T ss_pred cCEEEEECccc
Confidence 68999999974
No 387
>KOG1412|consensus
Probab=30.67 E-value=70 Score=25.02 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=26.4
Q ss_pred hhhCCEEEEccccccccCCCc----chhhhhc---CCCCCCCEE--EEchhhc
Q psy4800 4 KYHGSALLIDEVQTGGGPCGK----FWCHEHF---DLEESPDIV--TFSKKMQ 47 (119)
Q Consensus 4 ~~~~~lli~DEv~tG~Gr~G~----~~~~~~~---g~~~~pDi~--t~gK~lg 47 (119)
++.+.+-.+|-+.-|| .+|- -|+..++ |. +=++ .|+|-+|
T Consensus 208 k~k~lf~fFDiAYQGf-ASGD~~~DawAiR~fV~~g~---e~fv~QSFaKNfG 256 (410)
T KOG1412|consen 208 KSKNLFPFFDIAYQGF-ASGDLDADAWAIRYFVEQGF---ELFVCQSFAKNFG 256 (410)
T ss_pred HhcCceeeeehhhccc-ccCCccccHHHHHHHHhcCC---eEEEEhhhhhhcc
Confidence 4556778899998898 5564 4665543 32 2334 6899885
No 388
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=29.81 E-value=25 Score=28.89 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.0
Q ss_pred CEEEEccccccccCCCc
Q psy4800 8 SALLIDEVQTGGGPCGK 24 (119)
Q Consensus 8 ~lli~DEv~tG~Gr~G~ 24 (119)
+++|+||+|...|-...
T Consensus 133 ~~lifDEAHRAvGnyAY 149 (542)
T COG1111 133 SLLIFDEAHRAVGNYAY 149 (542)
T ss_pred eEEEechhhhccCcchH
Confidence 57999999986665554
No 389
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=29.71 E-value=1.2e+02 Score=17.64 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHH
Q psy4800 73 PGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVR 106 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L 106 (119)
|-+...++.+|+-+.. +.+.+.+++...+-...|
T Consensus 24 P~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANL 58 (66)
T PF06786_consen 24 PDAIGCALKTLNDIAADEALPEDVREQAAFAAANL 58 (66)
T ss_pred cHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHH
Confidence 5666778899998864 678888888877655443
No 390
>PHA00350 putative assembly protein
Probab=29.50 E-value=29 Score=27.52 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=12.2
Q ss_pred hCCEEEEccccccc
Q psy4800 6 HGSALLIDEVQTGG 19 (119)
Q Consensus 6 ~~~lli~DEv~tG~ 19 (119)
.|.++|+||+|.=|
T Consensus 81 ~gaLIViDEaq~~~ 94 (399)
T PHA00350 81 RGALYVIDEAQMIF 94 (399)
T ss_pred CCCEEEEECchhhc
Confidence 68999999999755
No 391
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=29.27 E-value=1.6e+02 Score=21.37 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q psy4800 70 MGDPGKVLLLKGIIDTIHN 88 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~~ 88 (119)
..+|-++++.+.+|+.+-.
T Consensus 180 ~PDP~AA~~ll~~l~~l~~ 198 (238)
T TIGR00161 180 YPDPRAAASLVEVLNKMLN 198 (238)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 4688888888888887743
No 392
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.51 E-value=1.3e+02 Score=18.17 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHHHHHHhh----hhcCCC
Q psy4800 90 NLLDRVQKTGDILLNVRLGL----GQESNL 115 (119)
Q Consensus 90 ~~~~~~~~~g~~l~~~L~~l----~~~~p~ 115 (119)
+..+.+.+..++++++++.+ -+++|.
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~ILDae~P~ 71 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAILDAEHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 34455556666666666554 356765
No 393
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.93 E-value=39 Score=22.41 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=17.7
Q ss_pred hhhhhCCEEEEccccccccCCCc
Q psy4800 2 YEKYHGSALLIDEVQTGGGPCGK 24 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~Gr~G~ 24 (119)
|-.+.++-+|+||+-.|||-.|.
T Consensus 81 LIEeadAAIi~~~~p~~FGCiGC 103 (152)
T COG4050 81 LIEEADAAIIVEEAPFGFGCIGC 103 (152)
T ss_pred hhhhcceeeEeccCCcccceecc
Confidence 34677888999999888876663
No 394
>KOG1720|consensus
Probab=27.74 E-value=23 Score=25.73 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=7.8
Q ss_pred cccCCCcchh
Q psy4800 18 GGGPCGKFWC 27 (119)
Q Consensus 18 G~Gr~G~~~~ 27 (119)
|+||||..-+
T Consensus 157 GlGRTG~liA 166 (225)
T KOG1720|consen 157 GLGRTGTLIA 166 (225)
T ss_pred CCCchhHHHH
Confidence 8999998533
No 395
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.35 E-value=1.1e+02 Score=16.55 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800 93 DRVQKTGDILLNVRLGLGQESNLQ 116 (119)
Q Consensus 93 ~~~~~~g~~l~~~L~~l~~~~p~i 116 (119)
+.+.+....|.+.-+.|.++||.|
T Consensus 22 edid~qIaeLe~KR~~Lv~qHP~i 45 (46)
T PF08946_consen 22 EDIDEQIAELEAKRQRLVDQHPRI 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334444555666667778889875
No 396
>PF15205 PLAC9: Placenta-specific protein 9
Probab=25.76 E-value=1.5e+02 Score=17.53 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800 79 LKGIIDTIHN--ENLLDRVQKTGDILLNVRLGLGQESN 114 (119)
Q Consensus 79 a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l~~~~p 114 (119)
...-|+++++ +...+++..--+-|...|++++-..|
T Consensus 23 v~~RLdviEe~veKTVEhLeaEvk~LLg~leelawnlP 60 (74)
T PF15205_consen 23 VHSRLDVIEETVEKTVEHLEAEVKGLLGLLEELAWNLP 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3445677765 45667777777777788888765554
No 397
>PHA02931 hypothetical protein; Provisional
Probab=25.76 E-value=20 Score=20.49 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=10.9
Q ss_pred hhhCCEEEEccccc
Q psy4800 4 KYHGSALLIDEVQT 17 (119)
Q Consensus 4 ~~~~~lli~DEv~t 17 (119)
.+.+.+|=+||||.
T Consensus 30 eesdsllpvdevha 43 (72)
T PHA02931 30 EESDSLLPVDEVHA 43 (72)
T ss_pred eccCcccchhhhhh
Confidence 45677888999985
No 398
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=25.23 E-value=39 Score=24.53 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=11.1
Q ss_pred hhhCCEEEEccccc
Q psy4800 4 KYHGSALLIDEVQT 17 (119)
Q Consensus 4 ~~~~~lli~DEv~t 17 (119)
+..+.+|++||+|.
T Consensus 103 ~a~~~VL~IDE~~~ 116 (261)
T TIGR02881 103 KALGGVLFIDEAYS 116 (261)
T ss_pred hccCCEEEEechhh
Confidence 34577999999985
No 399
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=24.88 E-value=34 Score=23.31 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=8.5
Q ss_pred CEEEEccccc
Q psy4800 8 SALLIDEVQT 17 (119)
Q Consensus 8 ~lli~DEv~t 17 (119)
-++|+||+|.
T Consensus 145 ~~lIvDE~h~ 154 (203)
T cd00268 145 KYLVLDEADR 154 (203)
T ss_pred CEEEEeChHH
Confidence 3799999986
No 400
>KOG4266|consensus
Probab=24.82 E-value=41 Score=28.65 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=9.5
Q ss_pred CCCEEEEchhh
Q psy4800 36 SPDIVTFSKKM 46 (119)
Q Consensus 36 ~pDi~t~gK~l 46 (119)
+|||+|+|..+
T Consensus 379 kpDiVtYG~~v 389 (1033)
T KOG4266|consen 379 KPDIVTYGRDV 389 (1033)
T ss_pred CCceEeecccc
Confidence 49999999876
No 401
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=24.82 E-value=33 Score=26.19 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=8.5
Q ss_pred EEEEcccccc
Q psy4800 9 ALLIDEVQTG 18 (119)
Q Consensus 9 lli~DEv~tG 18 (119)
+||+||+|+-
T Consensus 148 mLIIDE~H~l 157 (302)
T PF05621_consen 148 MLIIDEFHNL 157 (302)
T ss_pred EEEeechHHH
Confidence 6899999974
No 402
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=24.66 E-value=43 Score=20.63 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=7.9
Q ss_pred hcCCCCCCCEEEEchhh
Q psy4800 30 HFDLEESPDIVTFSKKM 46 (119)
Q Consensus 30 ~~g~~~~pDi~t~gK~l 46 (119)
..|.+ |||+.+||-.
T Consensus 23 ~dG~e--PDivL~G~ef 37 (85)
T PF08967_consen 23 EDGFE--PDIVLVGPEF 37 (85)
T ss_dssp HTT------EEEE-HHH
T ss_pred hcCCC--CCEEEEcHHH
Confidence 35777 9999999976
No 403
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=24.55 E-value=1.7e+02 Score=22.28 Aligned_cols=17 Identities=6% Similarity=-0.212 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhhcCC
Q psy4800 98 TGDILLNVRLGLGQESN 114 (119)
Q Consensus 98 ~g~~l~~~L~~l~~~~p 114 (119)
..+.+++.+.+..++.|
T Consensus 300 ~~~~l~~~l~~~l~~~~ 316 (401)
T PRK10874 300 WSRSLATLAEDALAKLP 316 (401)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 33344444544444444
No 404
>PHA00012 I assembly protein
Probab=23.94 E-value=54 Score=25.64 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=12.7
Q ss_pred hhCCEEEEccccccc
Q psy4800 5 YHGSALLIDEVQTGG 19 (119)
Q Consensus 5 ~~~~lli~DEv~tG~ 19 (119)
..|.++++||+|.-|
T Consensus 80 p~gsLlVlDEaq~~f 94 (361)
T PHA00012 80 SKNGLLVLDECGTWF 94 (361)
T ss_pred CCCcEEEEECccccc
Confidence 368899999999866
No 405
>PRK04964 hypothetical protein; Provisional
Probab=23.78 E-value=1.6e+02 Score=17.11 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHH
Q psy4800 73 PGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVR 106 (119)
Q Consensus 73 p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L 106 (119)
|-+...++.+|+-+.. +.+.+.+++...+-...|
T Consensus 24 P~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANL 58 (66)
T PRK04964 24 PDALGCVLKALNEIAADEALPESVREKAAYAAANL 58 (66)
T ss_pred cHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 5566677889998864 577788888877654433
No 406
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.67 E-value=43 Score=27.79 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=11.1
Q ss_pred EEEEccccccc-cCC
Q psy4800 9 ALLIDEVQTGG-GPC 22 (119)
Q Consensus 9 lli~DEv~tG~-Gr~ 22 (119)
-||||||-+|. |++
T Consensus 456 tlIFDEVD~GIsG~~ 470 (557)
T COG0497 456 TLIFDEVDTGISGRV 470 (557)
T ss_pred eEEEecccCCCChHH
Confidence 49999999986 444
No 407
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=23.51 E-value=3e+02 Score=20.42 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy4800 70 MGDPGKVLLLKGIIDTIH 87 (119)
Q Consensus 70 ~~~p~~~a~a~a~l~~i~ 87 (119)
-.+|-+++....+|..+-
T Consensus 183 ~PDP~AAa~vve~lnk~~ 200 (244)
T COG1938 183 RPDPRAAARVVEALNKML 200 (244)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 368888888888888764
No 408
>KOG4476|consensus
Probab=23.49 E-value=47 Score=24.52 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.1
Q ss_pred hhCCEEEEccccccccCC
Q psy4800 5 YHGSALLIDEVQTGGGPC 22 (119)
Q Consensus 5 ~~~~lli~DEv~tG~Gr~ 22 (119)
+.|-++|+||.+.|+-|.
T Consensus 45 rsGsIFVf~Ee~sGiKRW 62 (248)
T KOG4476|consen 45 RSGSIFVFDEEESGIKRW 62 (248)
T ss_pred ecCCEEEEeeccccceec
Confidence 468899999999998555
No 409
>COG5037 TOS9 Gluconate transport-inducing protein [Signal transduction mechanisms / Carbohydrate transport and metabolism]
Probab=23.49 E-value=47 Score=24.52 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.1
Q ss_pred hhCCEEEEccccccccCC
Q psy4800 5 YHGSALLIDEVQTGGGPC 22 (119)
Q Consensus 5 ~~~~lli~DEv~tG~Gr~ 22 (119)
+.|-++|+||.+.|+-|.
T Consensus 45 rsGsIFVf~Ee~sGiKRW 62 (248)
T COG5037 45 RSGSIFVFDEEESGIKRW 62 (248)
T ss_pred ecCCEEEEeeccccceec
Confidence 468899999999998555
No 410
>PRK10536 hypothetical protein; Provisional
Probab=23.24 E-value=45 Score=24.93 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=9.5
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
+.++|+||+|.
T Consensus 177 ~~~vIvDEaqn 187 (262)
T PRK10536 177 NAVVILDEAQN 187 (262)
T ss_pred CCEEEEechhc
Confidence 67999999984
No 411
>PRK09694 helicase Cas3; Provisional
Probab=23.24 E-value=42 Score=29.39 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=9.5
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
+.++|+||||.
T Consensus 440 ~svvIiDEVHA 450 (878)
T PRK09694 440 RSVLIVDEVHA 450 (878)
T ss_pred cCeEEEechhh
Confidence 56899999986
No 412
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=23.19 E-value=2.6e+02 Score=19.58 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=14.8
Q ss_pred cCCCHHHHHHHHHHHHHHh
Q psy4800 69 WMGDPGKVLLLKGIIDTIH 87 (119)
Q Consensus 69 ~~~~p~~~a~a~a~l~~i~ 87 (119)
|-.+|-+.++.+.+|+.+.
T Consensus 123 y~pDP~AA~alL~~L~kll 141 (188)
T TIGR00162 123 YMIDPKAAKAVLEVLCKML 141 (188)
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 3467988888888888774
No 413
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=23.12 E-value=38 Score=17.53 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhhcCCCC
Q psy4800 100 DILLNVRLGLGQESNLQ 116 (119)
Q Consensus 100 ~~l~~~L~~l~~~~p~i 116 (119)
+.+++-|..+.++||.|
T Consensus 13 ~qL~~lL~~l~~~HPei 29 (38)
T PF14483_consen 13 DQLQSLLQSLCERHPEI 29 (38)
T ss_dssp HHHHHHHHHHHHHSTHH
T ss_pred HHHHHHHHHHHHhChhH
Confidence 35677777788788864
No 414
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=22.82 E-value=1.1e+02 Score=17.40 Aligned_cols=25 Identities=4% Similarity=-0.004 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800 91 LLDRVQKTGDILLNVRLGLGQESNL 115 (119)
Q Consensus 91 ~~~~~~~~g~~l~~~L~~l~~~~p~ 115 (119)
+....++..++|++.++.+.++|..
T Consensus 3 l~~~~~~s~~r~k~~~e~I~~KY~~ 27 (58)
T PF10384_consen 3 LMQLRKQSDQRFKSRWESIIEKYGQ 27 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566677888888888877755
No 415
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=22.61 E-value=49 Score=20.03 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=10.4
Q ss_pred hhhC-CEEEEccccc
Q psy4800 4 KYHG-SALLIDEVQT 17 (119)
Q Consensus 4 ~~~~-~lli~DEv~t 17 (119)
++.. .++++||+..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 3444 8999999965
No 416
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=22.60 E-value=75 Score=19.24 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=25.0
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800 81 GIIDTIHNENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 81 a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
+.|-.+..+++.+++-..|+.|.+.|+.+.
T Consensus 43 k~LC~ms~eeF~~~~p~~GdvLy~~lq~~~ 72 (78)
T cd08538 43 LQLCSMTQEEFIEAAGICGEYLYFILQNIR 72 (78)
T ss_pred HHHHcCCHHHHHHHcccchHHHHHHHHHHH
Confidence 556677778899999889999999998875
No 417
>KOG3895|consensus
Probab=22.57 E-value=40 Score=26.66 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=14.3
Q ss_pred hhhhhCCEEEEccccccc
Q psy4800 2 YEKYHGSALLIDEVQTGG 19 (119)
Q Consensus 2 l~~~~~~lli~DEv~tG~ 19 (119)
++++..+||++||-|+-+
T Consensus 84 ~~~rakVLLVID~~H~DW 101 (488)
T KOG3895|consen 84 IAKRAKVLLVIDEPHTDW 101 (488)
T ss_pred ccccceEEEEecCCcccH
Confidence 355678999999999843
No 418
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=22.52 E-value=2.1e+02 Score=17.85 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=21.1
Q ss_pred eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q psy4800 66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGD 100 (119)
Q Consensus 66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~ 100 (119)
...+..|+.+++.++.-|+.+++ ++++++.+-+
T Consensus 60 ~~dl~in~~gialvl~LLd~i~~--Lr~el~~L~~ 92 (101)
T PRK10265 60 RHELALDWPGIAVALTLLDEIAH--LKQENRLLRQ 92 (101)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 35668899998888777777643 4444444433
No 419
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=22.48 E-value=1.6e+02 Score=20.49 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800 77 LLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG 110 (119)
Q Consensus 77 a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~ 110 (119)
..++.=|+.|++++...+.+.+.+.-.+.++.|.
T Consensus 36 ~TiRRDl~~L~~~g~~~r~~~~~~~~~~~~~~~~ 69 (185)
T PRK04424 36 QTIRLDRMELGIPELRERIKHVAEKNYDKVKSLP 69 (185)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhHHhhhcCC
Confidence 4466677788888999999999999999999885
No 420
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=22.37 E-value=41 Score=28.25 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=9.5
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
++++|+||+|.
T Consensus 366 ~~lvIvDEaHr 376 (667)
T TIGR00348 366 EVVVIFDEAHR 376 (667)
T ss_pred CEEEEEEcCcc
Confidence 46899999996
No 421
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.36 E-value=2.1e+02 Score=17.92 Aligned_cols=38 Identities=8% Similarity=-0.014 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800 72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL 109 (119)
Q Consensus 72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l 109 (119)
+.+-+|.+...|+-+. +++...+.+.....+...|+.+
T Consensus 53 p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis~LE~i 91 (93)
T COG1698 53 PAVRAATAISILEEISNDPNMPLHARTLIWNVISQLETI 91 (93)
T ss_pred chhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhc
Confidence 3456777788888775 4788888888777777777765
No 422
>KOG1749|consensus
Probab=21.94 E-value=38 Score=22.39 Aligned_cols=13 Identities=46% Similarity=0.511 Sum_probs=9.4
Q ss_pred cccc-ccccCCCcc
Q psy4800 13 DEVQ-TGGGPCGKF 25 (119)
Q Consensus 13 DEv~-tG~Gr~G~~ 25 (119)
|||. .||||-|..
T Consensus 98 devlv~gfgrkg~a 111 (143)
T KOG1749|consen 98 DEVLVAGFGRKGHA 111 (143)
T ss_pred CeeeeeccCccCcc
Confidence 5665 599999863
No 423
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=21.90 E-value=46 Score=23.08 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=8.7
Q ss_pred CEEEEccccc
Q psy4800 8 SALLIDEVQT 17 (119)
Q Consensus 8 ~lli~DEv~t 17 (119)
-+||+|||.|
T Consensus 154 ~vllvDDV~T 163 (190)
T TIGR00201 154 NIVLVDDVVT 163 (190)
T ss_pred EEEEEeeeec
Confidence 5899999986
No 424
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=21.65 E-value=46 Score=25.52 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=9.4
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
--++|+||+|+
T Consensus 146 ~~~iV~DE~H~ 156 (357)
T TIGR03158 146 FSTVIFDEFHL 156 (357)
T ss_pred CCEEEEecccc
Confidence 36899999997
No 425
>KOG1132|consensus
Probab=21.64 E-value=48 Score=29.09 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=9.4
Q ss_pred CCEEEEccccc
Q psy4800 7 GSALLIDEVQT 17 (119)
Q Consensus 7 ~~lli~DEv~t 17 (119)
|.++|+||+|-
T Consensus 248 nsIVIfDEAHN 258 (945)
T KOG1132|consen 248 NSIVIFDEAHN 258 (945)
T ss_pred ccEEEEecccc
Confidence 68999999973
No 426
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=21.60 E-value=48 Score=25.33 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=11.8
Q ss_pred hhhCCEEEEccccc
Q psy4800 4 KYHGSALLIDEVQT 17 (119)
Q Consensus 4 ~~~~~lli~DEv~t 17 (119)
..++.++|+||.|.
T Consensus 170 ~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 170 EDFDGVIVFDECHK 183 (303)
T ss_pred cCCCceEEeccchh
Confidence 45788999999995
No 427
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=21.54 E-value=57 Score=23.97 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=8.3
Q ss_pred hCCEEEEcccc
Q psy4800 6 HGSALLIDEVQ 16 (119)
Q Consensus 6 ~~~lli~DEv~ 16 (119)
.+-+|.+||+|
T Consensus 101 ~~~ILFIDEIH 111 (233)
T PF05496_consen 101 EGDILFIDEIH 111 (233)
T ss_dssp TT-EEEECTCC
T ss_pred CCcEEEEechh
Confidence 45688999997
No 428
>PTZ00424 helicase 45; Provisional
Probab=21.52 E-value=40 Score=25.74 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=8.5
Q ss_pred CEEEEccccc
Q psy4800 8 SALLIDEVQT 17 (119)
Q Consensus 8 ~lli~DEv~t 17 (119)
-++|+||+|+
T Consensus 172 ~lvViDEah~ 181 (401)
T PTZ00424 172 KLFILDEADE 181 (401)
T ss_pred cEEEEecHHH
Confidence 3789999996
No 429
>PF02340 PRRSV_Env: PRRSV putative envelope protein; InterPro: IPR003434 This family consists of a conserved probable envelope protein or ORF2 in Porcine reproductive and respiratory syndrome virus (PRRSV) also in the family is a minor structural protein from lactate dehydrogenase-elevating virus.
Probab=21.39 E-value=42 Score=24.27 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=10.0
Q ss_pred CCCEEEEc-hh-hc
Q psy4800 36 SPDIVTFS-KK-MQ 47 (119)
Q Consensus 36 ~pDi~t~g-K~-lg 47 (119)
+||+..+| |. +|
T Consensus 65 ~~dv~~~g~khPlG 78 (234)
T PF02340_consen 65 QPDVPHWGVKHPLG 78 (234)
T ss_pred CCCCchhhhcCCce
Confidence 49999999 98 64
No 430
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=21.21 E-value=59 Score=27.00 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=25.6
Q ss_pred ChhhhhCCEEEE-ccccccccCCCc------------chhhhhcCCCCCCCEE-EEchhhccCcccc
Q psy4800 1 MYEKYHGSALLI-DEVQTGGGPCGK------------FWCHEHFDLEESPDIV-TFSKKMQLGGYFL 53 (119)
Q Consensus 1 ~l~~~~~~lli~-DEv~tG~Gr~G~------------~~~~~~~g~~~~pDi~-t~gK~lg~gG~~~ 53 (119)
++|+++++.||. =++ .|| +.|. .....+...+ .|-|. +++|+.| +|++.
T Consensus 395 ~lc~~~~iPlv~l~D~-pGf-~~G~~~E~~G~~~~~a~l~~A~a~~~-VP~isvi~g~a~G-~g~~a 457 (569)
T PLN02820 395 ELCAQRGIPLLFLQNI-TGF-MVGSRSEASGIAKAGAKMVMAVACAK-VPKITIIVGGSFG-AGNYG 457 (569)
T ss_pred HHHHhcCCCEEEEEEC-CCC-CCCHHHHHhhHHHHHHHHHHHHHhCC-CCEEEEEECCcch-HHHHH
Confidence 479999987543 222 466 4432 1111112221 26664 7899984 54443
No 431
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=21.20 E-value=83 Score=27.75 Aligned_cols=33 Identities=33% Similarity=0.280 Sum_probs=17.9
Q ss_pred CEEEEccccccccCCCcchhhhhcCCCCCCCEEEEch
Q psy4800 8 SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44 (119)
Q Consensus 8 ~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK 44 (119)
-++|+||+|. ||..-+. ......- .+++++|+=
T Consensus 575 ~llVIDEahr-fgv~~~~-~L~~~~~--~~~vL~~SA 607 (926)
T TIGR00580 575 GLLIIDEEQR-FGVKQKE-KLKELRT--SVDVLTLSA 607 (926)
T ss_pred CEEEeecccc-cchhHHH-HHHhcCC--CCCEEEEec
Confidence 3799999987 5422111 1122222 378887663
No 432
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=21.16 E-value=65 Score=23.48 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=17.5
Q ss_pred hCCEEEEccccccccCCCcchhhhh
Q psy4800 6 HGSALLIDEVQTGGGPCGKFWCHEH 30 (119)
Q Consensus 6 ~~~lli~DEv~tG~Gr~G~~~~~~~ 30 (119)
.+.++|.+|=-.|-||.|+.|.+..
T Consensus 32 ~~~vviA~~QT~GRGR~gR~W~Sp~ 56 (245)
T PTZ00276 32 KPFAVLAESQTAGRGTGGRTWTSPK 56 (245)
T ss_pred CCeEEEECCCCCCCCCCCCcccCCC
Confidence 3467777665448999998776653
No 433
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.07 E-value=47 Score=28.48 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=8.3
Q ss_pred EEEEccccc
Q psy4800 9 ALLIDEVQT 17 (119)
Q Consensus 9 lli~DEv~t 17 (119)
++|+||+|+
T Consensus 378 LII~DEvH~ 386 (732)
T TIGR00603 378 LILLDEVHV 386 (732)
T ss_pred EEEEEcccc
Confidence 799999996
No 434
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=21.06 E-value=49 Score=28.01 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=8.6
Q ss_pred CEEEEccccc
Q psy4800 8 SALLIDEVQT 17 (119)
Q Consensus 8 ~lli~DEv~t 17 (119)
-++|+||+|+
T Consensus 248 ~~lViDEAH~ 257 (697)
T PRK11747 248 LLYVLDEGHH 257 (697)
T ss_pred CEEEEECccc
Confidence 4699999996
No 435
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=20.70 E-value=44 Score=25.47 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=7.4
Q ss_pred EEEEccccc
Q psy4800 9 ALLIDEVQT 17 (119)
Q Consensus 9 lli~DEv~t 17 (119)
++|+||+|-
T Consensus 86 viivDEAqr 94 (352)
T PF09848_consen 86 VIIVDEAQR 94 (352)
T ss_pred EEEEehhHh
Confidence 568999985
No 436
>PF03123 CAT_RBD: CAT RNA binding domain; InterPro: IPR004341 The CAT RNA-binding domain is found at the amino terminus of a family of transcriptional antiterminator proteins, the Co-AntiTerminator (CAT) domain. This domain forms a dimer in the crystal structure []. Transcriptional antiterminators of the BglG/SacY family are regulatory proteins that mediate the induction of sugar metabolizing operons in Gram-positive and Gram-negative bacteria. Upon activation, these proteins bind to specific targets in nascent mRNAs, thereby preventing abortive dissociation of the RNA polymerase from the DNA template [].; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1AUU_B 1TLV_A 1L1C_A 1H99_A 3RIO_A.
Probab=20.48 E-value=51 Score=18.77 Aligned_cols=11 Identities=9% Similarity=0.434 Sum_probs=8.5
Q ss_pred CCEEEEchhhc
Q psy4800 37 PDIVTFSKKMQ 47 (119)
Q Consensus 37 pDi~t~gK~lg 47 (119)
-+++++||++|
T Consensus 20 ~E~Iv~GkGIG 30 (59)
T PF03123_consen 20 QEVIVMGKGIG 30 (59)
T ss_dssp SEEEEE-TTSS
T ss_pred CEEEEEeecce
Confidence 47899999996
No 437
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.42 E-value=79 Score=26.33 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=8.5
Q ss_pred CEEEEccccc
Q psy4800 8 SALLIDEVQT 17 (119)
Q Consensus 8 ~lli~DEv~t 17 (119)
-++|+||+|.
T Consensus 359 ~lvVIDEaH~ 368 (630)
T TIGR00643 359 ALVIIDEQHR 368 (630)
T ss_pred ceEEEechhh
Confidence 4789999986
No 438
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=20.15 E-value=55 Score=23.53 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=11.9
Q ss_pred ChhhhhCCEEEEcc
Q psy4800 1 MYEKYHGSALLIDE 14 (119)
Q Consensus 1 ~l~~~~~~lli~DE 14 (119)
++|++||+.||+++
T Consensus 65 ~l~~~~gv~liINd 78 (221)
T PRK06512 65 PVIQEAGAAALIAG 78 (221)
T ss_pred HHHHHhCCEEEEeC
Confidence 47999999999975
No 439
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=20.14 E-value=91 Score=26.27 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=18.1
Q ss_pred CEEEEccccccccCCCcchhhhhcCCCCCCCEEEEch
Q psy4800 8 SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44 (119)
Q Consensus 8 ~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK 44 (119)
-++|+||+|. ||.. ........+.. |+++.|+=
T Consensus 385 ~lvVIDE~Hr-fg~~-qr~~l~~~~~~--~~iL~~SA 417 (681)
T PRK10917 385 GLVIIDEQHR-FGVE-QRLALREKGEN--PHVLVMTA 417 (681)
T ss_pred ceEEEechhh-hhHH-HHHHHHhcCCC--CCEEEEeC
Confidence 4789999985 3321 12222223433 88886653
Done!