RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4800
(119 letters)
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 143 bits (363), Expect = 3e-42
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-KPEFVPQQA 62
K H A ++DEVQTG G GKFW HEH++L++ PD+VTFSKK Q GYF P F P +
Sbjct: 282 KKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDPAFRPNKP 341
Query: 63 YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
YR FNTWMGDP + L+L+ II I ++LL+ V GD L L
Sbjct: 342 YRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDL 388
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 95.8 bits (239), Expect = 6e-25
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
K HG L+ DEVQTG G GK + EH+ + +PDI+T +K + GG L +
Sbjct: 208 KKHGVLLIADEVQTGFGRTGKLFACEHYGV--TPDIMTLAKALT-GGLPLSAVLATAEIM 264
Query: 64 RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
+ F T+ G+P ++D I +ENLL Q+ GD L
Sbjct: 265 QAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQNAQEKGDYLRK 311
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 90.3 bits (225), Expect = 1e-22
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEF---V 58
HG L+ DEVQTG G GK + EHF +E PDIVT K + LG + E
Sbjct: 224 HGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLGKGLGGGLPLGAVLGREEIMDAF 281
Query: 59 PQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
P T+ G+P +++ + E LL+ + G+ L
Sbjct: 282 PAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRE 327
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 89.6 bits (223), Expect = 3e-22
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----KPEFVPQ 60
HG L+ DEVQTG G GK + EHF +E PDIVT +K + GG L + E +
Sbjct: 255 HGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLAKSLG-GGLPLSAVVGRAEIMDW 311
Query: 61 QAYRVFNTWMGDPGKVLLLKG--IIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115
T+ G+P V ++D I ENLL+R + G+ L + L ++ L
Sbjct: 312 PPGGHGGTFGGNP--VACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPL 366
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 78.1 bits (193), Expect = 3e-18
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 9 ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEF--VPQQAYRV 65
ALLI DEVQTG G G W ++ + PDIV F KK Q+ G V + V
Sbjct: 260 ALLIFDEVQTGVGLTGTAWAYQQLGVR--PDIVAFGKKTQVCGIMAGRRVDEVEDNVFAV 317
Query: 66 ---FN-TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
N TW G+ ++ + I++ I + L++ + G+ LL L E
Sbjct: 318 SSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAE 368
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 68.3 bits (167), Expect = 1e-14
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK------PEFVP 59
H + L+ DEVQTG G G W ++ ++ PDIV F KK Q+ G + V
Sbjct: 251 HDALLIFDEVQTGVGLTGTAWAYQQLGVQ--PDIVAFGKKTQVCGIMAGRRVDEVADNVF 308
Query: 60 QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
R+ +TW G+ ++ I++ I E L+D + G LL L E
Sbjct: 309 AVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAE 361
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 60.6 bits (148), Expect = 5e-12
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 35/117 (29%)
Query: 6 HGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF------LKPEFV 58
HG ALLI DEVQTG G GK + +EH+ +E PDI+T +K LGG F E
Sbjct: 217 HG-ALLILDEVQTGLGRTGKLFAYEHYGVE--PDILTLAKA--LGGGFPIGAMLATEEIA 271
Query: 59 PQQAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
F T+ G+P VL + + E LL+ V++ G+ LL
Sbjct: 272 -----SAFTPGDHGSTFGGNPLACAVALAVL------EVLLEEGLLENVREKGEYLL 317
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 59.0 bits (144), Expect = 2e-11
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG-----GYFLKPEFVPQ 60
+G L++DEVQTG G GK + ++H+ +E PDI+T +K LG G L E V
Sbjct: 215 NGILLILDEVQTGMGRTGKLFAYQHYGIE--PDIMTLAKG--LGGGVPIGAVLAKEKVAD 270
Query: 61 QAYRVFN------TWMGDP--GKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
VF T+ G+P L +I+ I E LL+ + G+ L
Sbjct: 271 ----VFTPGDHGSTFGGNPLACAAAL--AVIEIIEEEGLLENAAEVGEYL 314
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 58.1 bits (141), Expect = 3e-11
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF------LKPEFVP 59
+ L+ DEVQTG G GKF+ +EH+ +E PDI+T +K LGG K E
Sbjct: 203 KDALLIFDEVQTGIGRTGKFFAYEHYGIE--PDIITLAKG--LGGGVPIGATLAKEEV-- 256
Query: 60 QQAYRVFN---TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
+A+ + T+ G+P +++ I E LL+ V++ GD
Sbjct: 257 AEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF 302
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 56.5 bits (137), Expect = 1e-10
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPE--FVP 59
+G L+ DEVQTG G GK + EHF +E PDI+T +K + LG + E F+P
Sbjct: 254 YGILLIDDEVQTGMGRTGKMFAIEHFGVE--PDIITLAKAIAGGLPLGAVIGRAELMFLP 311
Query: 60 QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
++ NT+ G+P ++ + E LL+ QK G+ L
Sbjct: 312 PGSHA--NTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYLR 352
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 53.5 bits (129), Expect = 1e-09
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-----LGGYFLKPEFVPQ 60
HG L+ DEV G G GK++ EHF + PD++TF+K + LGG +
Sbjct: 247 HGIVLIADEVMAGFGRTGKWFAIEHFGVV--PDLITFAKGVNSGYVPLGGVAISEAIAAT 304
Query: 61 QAYRVFN---TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108
A R + T+ G P I+ + E +++ + G +L L
Sbjct: 305 FADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLR 355
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 53.6 bits (129), Expect = 1e-09
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFV--- 58
HG L++DEVQ+G G GK++ EHF +E PDI+T K + + + E +
Sbjct: 237 HGILLVVDEVQSGLGRTGKWFAIEHFGVE--PDIITLGKPLGGGLPISATIGRAEIMDSL 294
Query: 59 --PQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGD 100
A+ T G+P +I+ I +NLL R +K G+
Sbjct: 295 PPLAHAF----TLSGNPVASAAALAVIEEIEEKNLLKRAEKLGN 334
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 52.7 bits (127), Expect = 3e-09
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKM--------QLGGYFLKP 55
K G+ L+IDEVQTG G G + +E F L+ PDIVT +K + +G L
Sbjct: 198 KKFGALLIIDEVQTGIGRTGTLFAYEQFGLD--PDIVTVAKGLGNGIPVGAMIGKKELGT 255
Query: 56 EFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
F P F G+P + K ++ I + L+ VQ+ G+ L
Sbjct: 256 AFGPGSHGSTFG---GNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQ 301
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 52.4 bits (126), Expect = 3e-09
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPEFVPQQ 61
G+ L++DEVQTG G GK + EH +++ PDI+ +K M +G E
Sbjct: 265 GALLILDEVQTGMGRTGKMFACEHENVQ--PDILCLAKALGGGVMPIGATIATEE----- 317
Query: 62 AYRVF-----NTWMGDP---GKVLLLKGIIDTIH---NENLLDRVQKTGDILLN 104
VF N ++ G L + TI+ +NL + ++ GD LL+
Sbjct: 318 ---VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLD 368
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 51.8 bits (125), Expect = 5e-09
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 33/115 (28%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
HG+ L++DEVQTG G G ++ H+H + PD+VT +K LGG P A
Sbjct: 216 HGALLVLDEVQTGIGRTGAWFAHQHDGVT--PDVVTLAKG--LGGGL------PIGACLA 265
Query: 66 FNTWMGDPGKVLLLKG------------------IIDTIHNENLLDRVQKTGDIL 102
F P LL G ++DTI +E LL+ ++ G+ L
Sbjct: 266 F-----GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQL 315
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 51.0 bits (122), Expect = 1e-08
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG----GYFLKPEFVP 59
HG + DE+QTG GK++ EHFD+ PD++T SK + G G + E +
Sbjct: 250 SEHGILFVADEIQTGFARTGKYFAIEHFDVV--PDLITVSKSLGAGVPISGVIGRKEIMD 307
Query: 60 QQAY-RVFNTWMGDP-GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
+ A + T+ G P G L ++D I ENL DR + G +++N + +
Sbjct: 308 ESAPGELGGTYAGSPLGCAAALA-VLDIIEKENLNDRAIELGKVVMNRFEEMKNK 361
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 49.3 bits (118), Expect = 4e-08
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
K HG L++DEVQTG G G + +E +E PDI+T K +GG + +
Sbjct: 210 KQHGLLLIVDEVQTGCGRTGTLFAYELSGIE--PDIMTLGKG--IGGGVPLAALLAKAEV 265
Query: 64 RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL------LNVRLGLGQ 111
VF T+ G+P + +I + L+ V+ G+ L L+ GL
Sbjct: 266 AVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEG 325
Query: 112 E 112
E
Sbjct: 326 E 326
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 48.5 bits (116), Expect = 8e-08
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 16/112 (14%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPE---- 56
HG+ L+ DEV G G GK + ++ + PDI+T +K + L +K E
Sbjct: 246 HGALLISDEVICGFGRTGKAFGFMNYGV--KPDIITMAKGITSAYLPLSATAVKKEIYEA 303
Query: 57 FVPQQAYRVF---NTWMGDPGK-VLLLKGIIDTIHNENLLDRVQKTGDILLN 104
F + Y F NT+ G+P L LK ++ + NENL++R + G++LL
Sbjct: 304 FKGKGEYEHFRHVNTFGGNPAACALALKN-LEIMENENLIERSAQLGELLLE 354
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 48.3 bits (115), Expect = 1e-07
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEF 57
Y + G L++DEVQTG G GK + EH+ +E PDI T +K + +G K
Sbjct: 194 YCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE--PDIFTLAKGLANGVPVGAMLAKSSL 251
Query: 58 VPQQAYRVFNTWMGDPGKVLLL---KGIIDTIHNENLLDRVQKTGDILL 103
Y + G G L + +D + L++ + G+ L
Sbjct: 252 GGAFGYGSHGSTFG--GNKLSMAAASATLDIMLTAGFLEQALENGNYLQ 298
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 48.1 bits (115), Expect = 1e-07
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
K + L++DE+QTG G GK H+H ++ PDIV K + G Y +
Sbjct: 209 KKYNVLLIVDEIQTGLGRTGKLLAHDHEGVK--PDIVLLGKALSGGLYPISAVLANDDVM 266
Query: 64 RVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
V T+ G+P + ++ + E L + Q+ G++
Sbjct: 267 LVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFR 312
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 47.3 bits (112), Expect = 2e-07
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
HG ++ DEVQ+G GK + +H+ + PD++T +K M L G +
Sbjct: 231 HGIVMIADEVQSGFARTGKLFAMDHY--ADKPDLMTMAKSLAGGMPLSGVVGNANIMDAP 288
Query: 62 AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
A + T+ G+P V +++ I E+L +R + G L
Sbjct: 289 APGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRL 330
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 46.8 bits (111), Expect = 4e-07
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVP 59
+ HG + DEVQTG G + EH E PD++T +K + L G + E +
Sbjct: 228 REHGIVFIADEVQTGFARTGAMFACEHEGPE--PDLITTAKSLADGLPLSGVTGRAEIMD 285
Query: 60 QQAY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
A + T+ G+P ++ I +E L++R ++ G ++ +
Sbjct: 286 APAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTD 331
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 46.6 bits (111), Expect = 4e-07
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQ- 60
HG L+ DEVQTG G G+++ + F + PDI+T +K + L E + Q
Sbjct: 240 HGILLIFDEVQTGFGRTGEWFAAQTFGVV--PDIMTIAKGIASGLPLSAVVASKELMEQW 297
Query: 61 QAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
T+ G+P ++ I E LLD + G L
Sbjct: 298 PLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYAL 340
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 46.3 bits (110), Expect = 5e-07
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
HG L+ DEVQTG GK + E++D PD++T +K M + + E +
Sbjct: 231 HGILLIADEVQTGFARTGKLFAMEYYD--VKPDLITMAKSLGGGMPISAVVGRAEVMDAP 288
Query: 62 AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNV 105
A + T+ G+P V ++D I E L R G L+ V
Sbjct: 289 APGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEV 333
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 46.0 bits (110), Expect = 6e-07
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
+G L+ DEVQ G G GK + HE + PDI+ +K + GG F
Sbjct: 208 NGLLLIFDEVQCGMGRTGKLFAHEWAGVT--PDIMAVAKGI--GGGF 250
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 45.9 bits (109), Expect = 7e-07
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----KPEFVPQ 60
HG L+ DEVQTG G G + E + + D+ TF+K + GG+ L + E +
Sbjct: 232 HGIMLIADEVQTGAGRTGTLFAMEQMGV--AADLTTFAKSIA-GGFPLAGVTGRAEVMDA 288
Query: 61 QAY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
A + T+ G+P ++ ENLL + G+ L
Sbjct: 289 IAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKL 331
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 45.2 bits (108), Expect = 1e-06
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-------FLKPE 56
H L++D++Q G G G F+ E + PDIVT SK + GY +KPE
Sbjct: 231 HDILLIVDDIQAGCGRTGTFFSFERAGIT--PDIVTLSK--SISGYGLPMALVLIKPE 284
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 44.2 bits (104), Expect = 3e-06
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK----KMQLGGYFLKPEFVPQQ 61
HG L++DEVQTG G GK++ E F+++ PD++ F K M L G + E +
Sbjct: 255 HGILLVMDEVQTGIGRTGKWFASEWFEVK--PDLIIFGKGVASGMGLSGVIGRKELMDLT 312
Query: 62 AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES 113
+ T +P + ++ I ENLL K G+ + RL +ES
Sbjct: 313 SGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKK-RLLEMKES 363
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 44.4 bits (105), Expect = 3e-06
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF------LKPEFVP 59
HG L++DEVQ G GK + EH +E PDI+ SK +GG +K EF
Sbjct: 258 HGILLIVDEVQAGFARTGKMFAFEHAGIE--PDIIVMSKA--VGGGLPLAVLGIKKEFDA 313
Query: 60 QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
Q T+ G+ + + + ENL + G+ L
Sbjct: 314 WQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWL 356
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 44.1 bits (105), Expect = 3e-06
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 27/117 (23%)
Query: 4 KYHGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYF-LKPEFVPQ 60
+G LLI DEV TG G GK + EH + PDI+ +K L GGY L
Sbjct: 246 DKYG-ILLIADEVATGFGRTGKMFACEHAGI--VPDILCLAK--GLTGGYLPLSAVLTSD 300
Query: 61 QAYRVFNTWMGDPGKVLL---------------LKGIIDTIHNENLLDRVQKTGDIL 102
R++ + + L +D + E+LL+RV + G L
Sbjct: 301 ---RIYEAFSDGDAGAFMHGHTYSGNPLACAAALA-NLDILEEEDLLERVAEIGAYL 353
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 43.0 bits (102), Expect = 7e-06
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 9 ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
ALLI DEVQTG G G + + H+ + +PDI+T +K LGG F
Sbjct: 219 ALLIFDEVQTGMGRTGDLFAYMHYGV--TPDILTSAKA--LGGGF 259
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 43.2 bits (102), Expect = 7e-06
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
G+ L+ DEVQ G G G W HE + +E PDI+T +K
Sbjct: 201 GALLVFDEVQCGLGRTGYLWAHEAYGVE--PDIMTLAK 236
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 42.7 bits (101), Expect = 8e-06
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
G L++DE+Q+G G GK + EH + PD+V SK
Sbjct: 265 GIPLIVDEIQSGFGRTGKMFAFEHAGII--PDVVVLSK 300
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 42.4 bits (100), Expect = 1e-05
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYR- 64
HG L+ DEVQTG GK + EH ++ + D+ T +K L G F P A
Sbjct: 231 HGILLIADEVQTGFARTGKLFAMEHHEV--AADLTTMAKG--LAGGF------PLAAVTG 280
Query: 65 ------------VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
+ T+ G+P + ++D I E+L +R + G+ L
Sbjct: 281 RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRL 330
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 42.4 bits (100), Expect = 1e-05
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVP 59
+ HG +D++Q G G GK+ HF++ PD+++F K M + + E +
Sbjct: 238 REHGILFAVDDIQQGLGRTGKWSSISHFNIT--PDLMSFGKSLAGGMPMSAIVGRKEIME 295
Query: 60 --QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTG 99
+ +F T +P ID I +E+LL R + G
Sbjct: 296 SLEAPAHLFTT-GANPVSCAAALATIDMIEDESLLQRSAEKG 336
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 41.9 bits (99), Expect = 2e-05
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 4 KYHGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
K++ LLI DE+QTG G GK C +H +++ PDIV K + G Y
Sbjct: 218 KHN--VLLIADEIQTGLGRTGKLLCVDHENVK--PDIVLLGKALSGGVY 262
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 41.9 bits (98), Expect = 2e-05
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
G+ L++DEVQTG G GK + EH ++ PDI+ +K + G + + + V
Sbjct: 258 GALLILDEVQTGMGRTGKMFACEHEGVQ--PDILCLAKALGGGVMPIGATIATEAVFSVL 315
Query: 67 --------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
T+ G+P I+ + +NL + GD LL+
Sbjct: 316 FDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLD 361
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 41.1 bits (96), Expect = 3e-05
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
H L++DEVQ G G G + EH +E PD V SK + L + PEF Q
Sbjct: 239 HDIKLILDEVQAGFGRSGTMFAFEHAGIE--PDFVVMSKAVGGGLPLAVLLIAPEFDAWQ 296
Query: 62 AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
T+ G+ ++ ++ ++NL Q+ G+ + + + +E
Sbjct: 297 PAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKE 347
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 40.9 bits (96), Expect = 4e-05
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
H L+IDE+ G G G+++ H+ + +E PDI+ K LGG
Sbjct: 261 HNVLLIIDEIPNGMGRTGEWFTHQAYGIE--PDILCIGKG--LGG 301
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 40.5 bits (95), Expect = 6e-05
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
H + L+ DEVQTG G G+ + + H+ + PD++T +K LGG F
Sbjct: 216 HNALLIFDEVQTGVGRTGELYAYMHYGVT--PDVLTTAKA--LGGGF 258
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 39.6 bits (93), Expect = 1e-04
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-------FLKPE 56
H L++D++Q G G G F+ E +E PDIV SK + GY +KPE
Sbjct: 227 HDILLIVDDIQAGCGRTGTFFSFEPAGIE--PDIVCLSK--SISGYGLPLALTLIKPE 280
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 39.3 bits (92), Expect = 1e-04
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
H + L+ DEVQTG G G+ + + H+ + +PDI+T +K LGG F
Sbjct: 212 HNALLIFDEVQTGVGRTGELYAYMHYGV--TPDILTSAKA--LGGGF 254
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 39.2 bits (92), Expect = 2e-04
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 7 GSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKM----QLGGYFLKPE----F 57
G + DEVQ G G G +W E + PDIVT K + +G E F
Sbjct: 818 GGVCIADEVQVGFGRVGSHWWAFETQGV--VPDIVTMGKPIGNGHPMGAVVTTREIADSF 875
Query: 58 VPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
Y FNT+ G+P + ++D I +E+L + G+ LL
Sbjct: 876 DNGMEY--FNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLL 919
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 38.9 bits (91), Expect = 2e-04
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 13 DEVQTGGGPCGKFWC-HEHFDLEESPDIVTFSKKMQ-----LGGYFLKPEFV-----PQQ 61
DEV TG G G F+ F ++ PDI+TF+K + LG + + P
Sbjct: 260 DEVVTGFGRLGHFFASEAVFGIQ--PDIITFAKGLTSGYQPLGAVIISERLLDVISGPNA 317
Query: 62 AYRVFN---TWMGDP-GKVLLLKGIIDTIHNENLLDRVQKTGD 100
VF T+ G P LK I+ + E L + V++ G
Sbjct: 318 KGNVFTHGFTYSGHPVACAAALKN-IEIMEREGLCEHVREVGP 359
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 37.0 bits (86), Expect = 8e-04
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-----LGGYFLKPE---- 56
HG L+ DEV TG G G + ++F + +PD++T +K + +G F+ E
Sbjct: 248 HGILLIFDEVITGFGRLGAPFAAQYFGV--TPDLLTCAKGLTNGAIPMGAVFVSSEIHDA 305
Query: 57 FV--PQQAYRVFN--TWMGDPGKVLLLKGIIDTIHNENLLDR 94
F+ P+ F+ T+ G P +D E LL R
Sbjct: 306 FMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTR 347
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 37.2 bits (86), Expect = 9e-04
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
H + L++DE+Q G G G + H+ + +PDIVT +K LGG F
Sbjct: 220 HDALLVLDEIQCGMGRTGTLFA--HWQEQVTPDIVTLAKA--LGGGF 262
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
LL+ DEV G G G+++ +HF ++ PD++T +K
Sbjct: 255 LLVADEVICGFGRTGEWFGSQHFGIK--PDLMTIAK 288
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 35.5 bits (82), Expect = 0.003
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 13 DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG 49
DEV TG G G + EH+ +E PDI+T K + G
Sbjct: 240 DEVMTGLGRTGAMFAMEHWGVE--PDIMTLGKGLGAG 274
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 35.3 bits (82), Expect = 0.003
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 13/44 (29%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSK 44
HG+ L+ DEV TG GG ++ +E PD+ T K
Sbjct: 233 HGALLIFDEVITGFRVALGG------AQGYYGVE--PDLTTLGK 268
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 34.9 bits (80), Expect = 0.005
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
G+ L+ DEVQ+ G GKF EH+ +E PDIVT K
Sbjct: 196 GALLIADEVQS-GLRTGKFLAIEHYKVE--PDIVTMGK 230
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 34.8 bits (81), Expect = 0.006
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
+G L+ DE+ TG G GK + EH +PDI+ SK + GGY
Sbjct: 227 DEYGVLLIADEIATGFGRTGKLFACEH--AGVTPDILCLSKGLT-GGY 271
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 34.6 bits (80), Expect = 0.007
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
L+ DEV G G G + E F ++ PDI+ SK
Sbjct: 255 LVADEVICGFGRTGNMFGCETFGIK--PDILVMSK 287
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 33.8 bits (77), Expect = 0.013
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
HG+ L+ DE+ TG G G + E + PD++ SK + G L QQ Y
Sbjct: 270 HGAFLIADEIATGFGRTGTLFACEQAGV--MPDLLCLSKGLTGGFLPLSAVLATQQLYDA 327
Query: 66 F------------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
F +++ G+P +D +++++ R Q T +
Sbjct: 328 FLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARM 376
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 33.6 bits (77), Expect = 0.017
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 4 KYHGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
KY+ L I DEV TG G GK + EH ++ PDI+T K + GGY
Sbjct: 256 KYN--VLFITDEVATGFGRTGKMFACEHENVT--PDIMTAGKGLT-GGY 299
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 33.5 bits (77), Expect = 0.017
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 YHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
G L+ DE+ TG G GK + EH + PDI+ K + GG
Sbjct: 237 REGILLIADEIATGFGRTGKLFACEHAGIA--PDILCLGKALT-GGT 280
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 32.9 bits (76), Expect = 0.020
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
HG L+ DEV TG G G + E F + PDI+TF+K
Sbjct: 251 HGILLIFDEVITGFGRLGAAFAAERFGVT--PDIITFAK 287
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 32.4 bits (74), Expect = 0.039
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
+ L++DE+QTG G GK EH +E VT K GG++
Sbjct: 220 NNVTLILDEIQTGLGRTGKLLAEEHEGIEAD---VTLIGKALSGGFY 263
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 32.1 bits (74), Expect = 0.042
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 6 HGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY- 63
HG L+ DE+ TG G G F C E + SPDI+ SK + GGY +P A
Sbjct: 233 HGVLLIFDEIATGFGRTGTLFAC-EQAGV--SPDIMCLSKGLT-GGY------LPLAATL 282
Query: 64 ---RVFNT-WMGDPGKVLL 78
+F + D K +
Sbjct: 283 CTAEIFEAFYSDDRAKAFM 301
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 31.2 bits (71), Expect = 0.074
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
+G LL+D GG E D+VTFS LGG
Sbjct: 121 YGILLLVDAASAGGA----SPAPGVLIPEGGADVVTFSLHKNLGG 161
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 30.9 bits (70), Expect = 0.11
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
+G L+ DE+ TG G GK + EH + PDI+ K + GGY
Sbjct: 240 YGVLLIFDEIATGFGRTGKLFALEHAGV--VPDIMCIGKALT-GGY 282
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 30.4 bits (70), Expect = 0.16
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 13/44 (29%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSK 44
HG+ L+ DEV TG GG ++ + PD+ T K
Sbjct: 230 HGALLIFDEVMTGFRVALGGA------QGYYGVT--PDLTTLGK 265
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 30.7 bits (70), Expect = 0.17
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 13 DEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKM 46
DEVQ G G G FW E + PDI+T +K M
Sbjct: 784 DEVQVGYGRLGHYFWGFEQQGV--VPDIITMAKGM 816
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 30.3 bits (69), Expect = 0.19
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG 49
+ L+ DEV G G+ + E F PDI+T +K + G
Sbjct: 254 YDVLLVSDEVICAFGRLGEMFGCERFGYV--PDIITCAKGITSG 295
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 30.2 bits (68), Expect = 0.19
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 10 LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG 49
L DEV G G G+++ HEHF E PD ++ +K + G
Sbjct: 259 LCADEVIGGFGRTGEWFAHEHFGFE--PDTLSIAKGLTSG 296
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 30.1 bits (68), Expect = 0.24
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 3 EKYHGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
K+ + L+I DE+QTG GK + ++ PD+V K LGG
Sbjct: 255 SKH--NVLMIADEIQTGLARTGKMLACDWEEVR--PDVVILGKA--LGG 297
>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 29.6 bits (67), Expect = 0.30
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 6 HGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFSK 44
+G+ L+IDE T GP G + H LE PD + K
Sbjct: 251 YGTLLVIDETHTISSGPGG--YTRAH-GLE--PDFLVVGK 285
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 29.6 bits (67), Expect = 0.33
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 10 LLI-DEVQTGGGPCG-KFWCHEHFDLEESPDIVTFSK 44
LLI DEV TG G G F H+ +E PD++T +K
Sbjct: 256 LLIADEVVTGFGRLGSMFGSD-HYGIE--PDLITVAK 289
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 28.5 bits (64), Expect = 0.91
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
+G + DEVQTG G ++ EH + PD++T +K
Sbjct: 252 NGVVFIADEVQTGFARTGAWFACEHEGIV--PDLITTAK 288
>gnl|CDD|239120 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH. Nucleoside hydrolases
similar to Campylobacter jejuni nucleoside hydrolase.
This group contains eukaryotic and bacterial proteins
similar to C. jejuni nucleoside hydrolase. Nucleoside
hydrolases cleave the N-glycosidic bond in nucleosides
generating ribose and the respective base. These enzymes
vary in their substrate specificity. C. jejuni
nucleoside hydrolase is inactive against natural
nucleosides or against common nucleoside analogues. .
Length = 318
Score = 27.9 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 37 PDIVTFSKKM-QLGGYF-LKPEFVPQQAYRVFNTWMGDP 73
PD +K++ +GGY EFV + FN M DP
Sbjct: 150 PDFAPLAKELVIMGGYLDDIGEFVNRHYASDFNLIM-DP 187
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 27.4 bits (61), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 42 FSKKMQLGGYFLKPEFVPQQAYRVFNT-WMGDPGKVLLLKGIIDTI 86
F K ++ G +PE P + Y + T W DP K K I+ I
Sbjct: 253 FYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLI 298
>gnl|CDD|216131 pfam00811, Ependymin, Ependymin.
Length = 133
Score = 26.9 bits (60), Expect = 1.8
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 22 CGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGD 72
C K + E P T + LG VP Q RV W G
Sbjct: 34 CKKKTLKSPWHPLEIPSNATHEGEYYLGS-----PSVPGQGLRV-REWSGR 78
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 27.2 bits (60), Expect = 2.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 42 FSKKMQLGGYFLKPEFVPQQAYRVFNT-WMGDPGKVLLLKGIIDTIHNE 89
F K ++ G L PE P + Y + + W DP K K I+ I +
Sbjct: 326 FYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ 374
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 26.9 bits (60), Expect = 2.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSK 44
+GS L+ DEV TG GG E+F +E PD+ T K
Sbjct: 228 YGSLLIFDEVMTGFRVALGG------AQEYFGVE--PDLTTLGK 263
>gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional.
Length = 424
Score = 27.1 bits (60), Expect = 2.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 74 GKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
GK+++L G + T+ E +LD+ K + L
Sbjct: 395 GKIVMLDGEVLTLDEEKILDKFLKVIEKL 423
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 26.3 bits (59), Expect = 4.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 28 HEHFDLEESPDIV--TFSKKMQ--LGGY 51
EHF + + DI+ T K + GGY
Sbjct: 226 VEHFGVMDRVDIITGTLGKALGGASGGY 253
>gnl|CDD|184851 PRK14849, PRK14849, putative lipoprotein/autotransporter
domain-containing protein; Provisional.
Length = 1806
Score = 26.2 bits (57), Expect = 4.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
NTW P + G+ D+ H R++ GD + RLG+
Sbjct: 1670 LNTWYVQPQAQITWMGVKDSDHTRKDGTRIETEGDGNVQTRLGV 1713
>gnl|CDD|232840 TIGR00129, fdhD_narQ, formate dehydrogenase family accessory
protein FdhD. FdhD in E. coli and NarQ in B. subtilis
are required for the activity of formate dehydrogenase.
The gene name in B. subtilis reflects the requirement of
the neighboring gene narA for nitrate assimilation, for
which NarQ is not required. In some species, the gene is
associated not with a known formate dehydrogenase but
with a related putative molybdopterin-binding
oxidoreductase. A reasonable hypothesis is that this
protein helps prepare a required cofactor for assembly
into the holoenzyme [Energy metabolism, Anaerobic,
Energy metabolism, Electron transport].
Length = 237
Score = 25.5 bits (56), Expect = 7.6
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 3 EKYHGSALLIDEVQTGGGPCGKFW------------CHEHFDLEESPDIVTFSKKMQLGG 50
+ +++ E +TG CG+ E FDLEE + + + +K Q+
Sbjct: 66 DLSSRRFMILKENRTGCSGCGRERLNRIPKMVGPVKATERFDLEEIDEALNYMEKEQVVW 125
>gnl|CDD|218143 pfam04551, GcpE, GcpE protein. In a variety of organisms,
including plants and several eubacteria, isoprenoids are
synthesised by the mevalonate-independent
2-C-methyl-D-erythritol 4-phosphate (MEP) pathway.
Although different enzymes of this pathway have been
described, the terminal biosynthetic steps of the MEP
pathway have not been fully elucidated. GcpE gene of
Escherichia coli is involved in this pathway.
Length = 345
Score = 25.5 bits (57), Expect = 8.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108
LL +GI DTI RV T D + V++
Sbjct: 215 ALLAEGIGDTI-------RVSLTEDPVEEVKVA 240
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 25.5 bits (56), Expect = 8.3
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 4 KYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEE-SPDIVTFSKKMQLGGYFLKPEFVPQQ 61
K + DE+QTG G GK F C D + +PD+ K + G + + +
Sbjct: 217 KEENVLFIADEIQTGLGRTGKLFAC----DWDNVTPDMYILGKALGGGVFPISCVAANRD 272
Query: 62 AYRVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
VF T+ G+P + ++ + E L +R + G+
Sbjct: 273 ILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKE 321
>gnl|CDD|225940 COG3405, CelA, Endoglucanase Y [Carbohydrate transport and
metabolism].
Length = 360
Score = 25.6 bits (56), Expect = 8.4
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMGDP 73
+ P ++P ++ F+ W G+P
Sbjct: 174 SWRFNPSYLPPHLFQYFSLWFGEP 197
>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this
family are MshD, the acetyltransferase that catalyzes
the final step of mycothiol biosynthesis in various
members of the Actinomyctes, Mycothiol replaces
glutathione in these species [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 292
Score = 25.4 bits (56), Expect = 8.7
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCH 28
G AL I + GG + W H
Sbjct: 87 IGRAL-IRALLAKGGGRLRVWAH 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.141 0.440
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,273,137
Number of extensions: 556171
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 89
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)