RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4800
(119 letters)
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 146 bits (371), Expect = 2e-43
Identities = 55/99 (55%), Positives = 68/99 (68%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
HG A L+DEVQTGGG GKFW HEH+ L++ D++TFSKKM GG+F K EF P YR+
Sbjct: 291 HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI 350
Query: 66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
FNTW+GDP K LLL +I+ I E+LL G +LL
Sbjct: 351 FNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT 389
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 131 bits (331), Expect = 9e-38
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL------KPEFVP 59
+ L+ DEVQTG G G W ++ D+ PDIV F KK Q+ G + V
Sbjct: 264 FDALLIFDEVQTGCGLTGTAWAYQQLDVA--PDIVAFGKKTQVCGVMAGRRVDEVADNVF 321
Query: 60 QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
R+ +TW G+ ++ + I++ I E L +R + G L
Sbjct: 322 AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRA 366
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 70.3 bits (173), Expect = 1e-15
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPE---FV 58
G L++DE QTG G G + + + PDI+T SK + L
Sbjct: 236 RGMLLILDEAQTGVGRTGTMFACQRDGVT--PDILTLSKTLGAGLPLAAIVTSAAIEERA 293
Query: 59 PQQAYRVFNTWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
+ Y + T + DP +V +D + + L+ R GD L
Sbjct: 294 HELGYLFYTTHVSDPLPAAVGLRV------LDVVQRDGLVARANVMGDRLR 338
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 65.3 bits (160), Expect = 7e-14
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
HG ++ DEV+ G G+ C EH PDI+ K + L E +
Sbjct: 234 HGILVVCDEVKVGLARSGRLHCFEHEGFV--PDILVLGKGLGGGLPLSAVIAPAEILDCA 291
Query: 62 AYRVFNTWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
+ T G+P VL +TI ++L ++ G +L
Sbjct: 292 SAFAMQTLHGNPISAAAGLAVL------ETIDRDDLPAMAERKGRLLR 333
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 61.8 bits (151), Expect = 1e-12
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 33/116 (28%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
+G + DEVQTG G ++ EH + PDIVT +K M L + E
Sbjct: 258 NGVVFIADEVQTGFARTGAWFASEHEGIV--PDIVTMAKGIAGGMPLSAVTGRAE----- 310
Query: 62 AYRVFNTWMGDPGKVLLLKG--------------IIDTIHNENLLDRVQKTGDILL 103
+ + G L G + + +L R + +
Sbjct: 311 ---LMDAV--YAG---GLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVT 358
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 61.1 bits (149), Expect = 2e-12
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 27/122 (22%)
Query: 6 HGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK-----KMQLGGYFLKPE--F 57
+G LL+ DEVQ G G GK + E+F+ PD++T +K M +G + + F
Sbjct: 245 YG-ILLVDDEVQMGLGRTGKLFAIENFNTV--PDVITLAKALGGGIMPIGATIFRKDLDF 301
Query: 58 VP-QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN--------VRLG 108
P + NT+ G+ + +ID + ++LL V + G I VR G
Sbjct: 302 KPGMHS----NTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQGLADDVR-G 354
Query: 109 LG 110
+G
Sbjct: 355 IG 356
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 60.7 bits (148), Expect = 3e-12
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 39/119 (32%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
+ + DEVQTG G + EH ++ PD++ +K + L + E
Sbjct: 260 NDVVFIADEVQTGFARTGAMFACEHEGID--PDLIVTAKGIAGGLPLSAVTGRAE----- 312
Query: 62 AYRVFNTWMGDPGKVLLLKGI-----------------IDTIHNENLLDRVQKTGDILL 103
+ ++ G+ I+TI +E L+ R Q+ I+
Sbjct: 313 ---IMDSP--HVS------GLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMK 360
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 59.9 bits (146), Expect = 5e-12
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEF---- 57
HG L+ DEVQ+G G G + E + PD+ TF+K L G + E
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGVA--PDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 58 -VPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
T+ G+P + ++ ENLL + G L +
Sbjct: 290 APGGLG----GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKD 333
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 59.5 bits (145), Expect = 7e-12
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 35/118 (29%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------ 59
G+ L++DE+QTG G GK + EHF + PDI+T +K LGG P
Sbjct: 218 KGALLILDEIQTGMGRTGKRFAFEHFGIV--PDILTLAK--ALGGGV------PLGVAVM 267
Query: 60 -QQAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
++ R T+ G+P + + L +R + G +
Sbjct: 268 REEVARSMPKGGHGTTFGGNPLAMAAGVAAI------RYLERTRLWERAAELGPWFME 319
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 59.5 bits (145), Expect = 9e-12
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 30/116 (25%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF-----LKPEFVPQ 60
L+ DE+Q G G GKF+ +EH + PDI+T +K LG + + V
Sbjct: 212 KDILLIADEIQCGMGRSGKFFAYEHAQIL--PDIMTSAKA--LGCGLSVGAFVINQKV-- 265
Query: 61 QAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
A T+ G+P V + E +L+ V K L
Sbjct: 266 -ASNSLEAGDHGSTYGGNPLVCAGVNAVF------EIFKEEKILENVNKLTPYLEQ 314
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 57.5 bits (140), Expect = 4e-11
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 26/113 (23%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP--EFVPQQAY 63
+ + L+ DEVQ G G GK + ++ + + PD++T +K LGG P + +
Sbjct: 216 YDALLVFDEVQCGMGRTGKLFAYQKYGVV--PDVLTTAKG--LGGGV--PIGAVIVNERA 269
Query: 64 RVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
V T+ G+P V+ + E L+ V++ G+ L+
Sbjct: 270 NVLEPGDHGTTFGGNPLACRAGVTVI------KELTKEGFLEEVEEKGNYLMK 316
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 56.8 bits (138), Expect = 6e-11
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 35/118 (29%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------ 59
H + L+ DEVQ G G G + + H+ + PDI+T +K LGG F P
Sbjct: 234 HQALLVFDEVQCGMGRTGDLFAYMHYGVT--PDILTSAKA--LGGGF------PVSAMLT 283
Query: 60 -QQAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
Q+ F+ T+ G+P G D I+ +L + +
Sbjct: 284 TQEIASAFHVGSHGSTYGGNPLACAVAGAAF------DIINTPEVLQGIHTKRQQFVQ 335
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 54.8 bits (133), Expect = 3e-10
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
L+IDEVQTG G G+F+ ++HF+L+ PD++ +K LGG
Sbjct: 205 KDVLLIIDEVQTGIGRTGEFYAYQHFNLK--PDVIALAKG--LGG 245
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 53.0 bits (128), Expect = 1e-09
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 9 ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP-------Q 60
L + DEVQTG G GK C H++++ PD++ K L G P
Sbjct: 247 VLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKA--LSG-----GHYPISAVLAND 297
Query: 61 QAYRVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
V T+ G+P + ++ + NE L + +K G L
Sbjct: 298 DIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 347
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 52.5 bits (127), Expect = 2e-09
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 22/112 (19%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------ 59
+ DE+QTG G GK + + ++ PD+ K LGG P
Sbjct: 215 ENVLFVADEIQTGLGRTGKVFACDWDNVT--PDMYILGKA--LGG-----GVFPISCAAA 265
Query: 60 -QQAYRVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
+ VF T+ G+P + ++ + E L +R + G+ L+
Sbjct: 266 NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVG 317
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 52.3 bits (126), Expect = 3e-09
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 23/110 (20%)
Query: 9 ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP-------Q 60
L I DE+QTG G++ ++ ++ PDIV K L G P
Sbjct: 258 VLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKA--LSG-----GLYPVSAVLCDD 308
Query: 61 QAYRVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
T+ G+P + ++ + ENL + K G IL N
Sbjct: 309 DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 49.5 bits (119), Expect = 2e-08
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 29/115 (25%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY----R 64
LLI DEV G G GK + ++D++ PDI+T +K + Y +P A
Sbjct: 251 LLISDEVICGFGRTGKAFGFMNYDVK--PDIITMAKGIT-SAY------LPLSATAVKRE 301
Query: 65 VFNTWMGDPGKVLLLKGI---------------IDTIHNENLLDRVQKTGDILLN 104
++ + G ++ I NENL++R + G +LL
Sbjct: 302 IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLE 356
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 48.7 bits (117), Expect = 4e-08
Identities = 30/118 (25%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 6 HGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG-GYF-LKPEFVPQQA 62
G + I DEV +G G CG + PDI K L GY L Q
Sbjct: 224 AG-IIFIADEVMSGMGRCGSPLALSRWSGVT-PDIAVLGK--GLAAGYAPLAGLLAAPQV 279
Query: 63 YRVF----------NTWMGDPG------KVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
Y T+ G P VL D + E+L ++ G LL
Sbjct: 280 YETVMGGSGAFMHGFTYAGHPVSVAAGLSVL------DIVEREDLTGAAKERGAQLLA 331
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 47.6 bits (114), Expect = 1e-07
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 22/113 (19%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYF-LKPEFVPQQAYRVF 66
LL+ DEV TG G G + + F + PD++ +K Q+ G + + Y+ F
Sbjct: 255 LLVFDEVITGFGRTGSMFGADSFGVT--PDLMCIAK--QVTNGAIPMGAVIASTEIYQTF 310
Query: 67 NTWMGDPGKVLLLKGI---------------IDTIHNENLLDRVQKTGDILLN 104
V G + + ENL+ V +
Sbjct: 311 MNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEK 363
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 46.8 bits (112), Expect = 2e-07
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 31/119 (26%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPEFVPQ 60
+ L+ DEV TG G G + +H+ ++ PD++T +K L G +
Sbjct: 254 YDVLLVADEVVTGFGRLGTMFGSDHYGIK--PDLITIAKGLTSAYAPLSGVIVAD----- 306
Query: 61 QAYRVFNTWMGDPGKVLLLK--------------GI--IDTIHNENLLDRVQKTGDILL 103
RV+ + K+ L G+ ++ I +L+ +TG
Sbjct: 307 ---RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFR 362
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 46.1 bits (110), Expect = 4e-07
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPEFVPQQAY 63
LLI DEV G G G ++ + + P I+T +K +GG + E
Sbjct: 259 LLIADEVICGFGRTGNWFGTQTMGIR--PHIMTIAKGLSSGYAPIGGSIVCDEV-----A 311
Query: 64 RVF--------NTWMGDP-GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL 107
V T+ G P + L+ + + EN+LD V+ L +
Sbjct: 312 HVIGKDEFNHGYTYSGHPVAAAVALE-NLRILEEENILDHVRNVAAPYLKEKW 363
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 45.7 bits (109), Expect = 6e-07
Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 32/117 (27%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYFLKPEFVPQQAY---- 63
+I DEV G G G W +D PD + SK L G+ P A
Sbjct: 266 PVISDEVICGFGRTGNTWGCVTYDFT--PDAIISSK--NLTAGF------FPMGAVILGP 315
Query: 64 RVFNTWMGDPGKVLLLK-GI---------------IDTIHNENLLDRVQKTGDILLN 104
+ + G ID + NE L + V++
Sbjct: 316 ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEE 372
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 44.5 bits (106), Expect = 1e-06
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 33/118 (27%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEH-FDLEESPDIVTFSKKM-----QLGGYFLKPEFVPQQA 62
L I DEV TG G CG+++ E F + PDI+TF+K + LGG +
Sbjct: 257 LYISDEVVTGFGRCGEWFASEKVFGVV--PDIITFAKGVTSGYVPLGGLAISE------- 307
Query: 63 YRVFNTWMGDPGKVLLLK--------------GI--IDTIHNENLLDRVQKTGDILLN 104
V G+ K + I+ + E ++D+ ++ D
Sbjct: 308 -AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAA 364
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 42.6 bits (101), Expect = 5e-06
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG-GYF-LKPEFVPQQAYRVF 66
LL+ DEV G G G+++ H+HF + PD+ T +K L GY + FV ++
Sbjct: 255 LLVADEVICGFGRTGEWFGHQHFGFQ--PDLFTAAK--GLSSGYLPIGAVFVGKRVAEGL 310
Query: 67 ---------NTWMGDP-GKVLLLKGIIDTIHNENLLDRVQ-KTGDILLN 104
T+ G P + + + +E ++ RV+ G +
Sbjct: 311 IAGGDFNHGFTYSGHPVCAAVAHA-NVAALRDEGIVQRVKDDIGPYMQK 358
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 41.0 bits (97), Expect = 2e-05
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQA----YR 64
LLI DE+ TG G G + +H + SPDI+ K + GGY + A
Sbjct: 270 LLIFDEIATGFGRTGALFAADHAGV--SPDIMCVGKALT-GGY------LSLAATLCTAD 320
Query: 65 VFNTWMGDPGKVLL 78
V +T L+
Sbjct: 321 VAHTISAGAAGALM 334
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 39.8 bits (94), Expect = 6e-05
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 30/113 (26%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQA----YR 64
LLI DE+ TG G GK + EH ++ +PDI+ K + GG + A
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEI--APDILCLGKALT-GGT------MTLSATLTTRE 291
Query: 65 VFNTWMGDPGKVLL---------------LKGIIDTIHNENLLDRVQKTGDIL 102
V T + + + + + +V L
Sbjct: 292 VAETISNGEAGCFMHGPTFMGNPLACAAANAS-LAILESGDWQQQVADIEVQL 343
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 38.7 bits (91), Expect = 1e-04
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
L+I DEV TG G GK + EH ++ PD++ K + GGY
Sbjct: 247 LMIVDEVATGFGRTGKMFACEHENV--QPDLMAAGKGIT-GGY 286
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 38.4 bits (89), Expect = 2e-04
Identities = 28/114 (24%), Positives = 35/114 (30%), Gaps = 31/114 (27%)
Query: 10 LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYFLKPEFVPQQA----Y 63
+I DEV TG G E PDI F+K L GG VP
Sbjct: 631 PVIFDEVFTGFWRLGVETTTELLG--CKPDIACFAK--LLTGGM------VPLAVTLATD 680
Query: 64 RVFNTWMGDPGKVLLLKG---------------IIDTIHNENLLDRVQKTGDIL 102
VF+++ GD LL G I + + G L
Sbjct: 681 AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTL 734
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 18/60 (30%)
Query: 3 EKYHGSALLIDEV-------QTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGY 51
+KY + +++D+ + G G E+ + + DI+ T K + GGY
Sbjct: 202 DKY-NALVMVDDSHAVGFIGENGRG------TPEYCGVADRVDILTGTLGKALGGASGGY 254
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 34.5 bits (80), Expect = 0.005
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 17/59 (28%)
Query: 3 EKYHGSALLIDEV-------QTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-QLGGY 51
++ +A+++D+ G G HF L + D++ TFSK + LGG+
Sbjct: 200 NEF-DAAVMVDDAHSLGVIGHKGAG------TASHFGLNDDVDLIMGTFSKSLASLGGF 251
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 33.7 bits (78), Expect = 0.007
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 17/59 (28%)
Query: 3 EKYHGSALLIDEV-------QTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-QLGGY 51
+K+ G+ +L+DE G G +E LE D V TFSK + +GG+
Sbjct: 221 KKH-GAMVLVDEAHSMGFFGPNGRG------VYEAQGLEGQIDFVVGTFSKSVGTVGGF 272
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 33.7 bits (78), Expect = 0.008
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 17/57 (29%)
Query: 6 HGSALLIDEV-------QTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGY 51
+ + +++D+ + G G HE+ D+ DI+ T K + GGY
Sbjct: 206 YDALVMVDDSHAVGFVGENGRG------SHEYCDVMGRVDIITGTLGKALGGASGGY 256
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 32.6 bits (75), Expect = 0.022
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 17/59 (28%)
Query: 3 EKYHGSALLIDEV-------QTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-QLGGY 51
+++ G ALL+DE G G L + + +K G
Sbjct: 213 KEF-GCALLVDESHSLGTHGPNGAG------LLAELGLTREVHFMTASLAKTFAYRAGA 264
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 30.3 bits (69), Expect = 0.13
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 17/59 (28%)
Query: 3 EKYHGSALLIDEV-------QTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-QLGGY 51
E++ G+ IDEV G G E L DI T +K GGY
Sbjct: 205 EEF-GALTYIDEVHAVGMYGPRGAG------VAERDGLMHRIDIFNGTLAKAYGVFGGY 256
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 30.1 bits (69), Expect = 0.15
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 15/50 (30%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
+G L+ DEV TG GG E L+ PD+VT K + GG
Sbjct: 231 YGVLLIADEVMTGFRLAFGG------ATELLGLK--PDLVTLGKIL--GG 270
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 29.8 bits (68), Expect = 0.19
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 15/50 (30%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
G+ L++DEV TG G +F++E DI+ K + GG
Sbjct: 236 SGALLILDEVVTGFRLGLEG------AQGYFNIE--GDIIVLGKII--GG 275
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 29.8 bits (68), Expect = 0.20
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 15/50 (30%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
G+ L+IDEV TG G +++ + PD+ K + GG
Sbjct: 233 FGALLIIDEVMTGFRVALAG------AQDYYHVI--PDLTCLGKII--GG 272
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 29.4 bits (67), Expect = 0.21
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 15/50 (30%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
+G+ L+ DEV TG ++ + PD+ K + GG
Sbjct: 233 NGALLIFDEVMTGFRVAYNC------GQGYYGVT--PDLTCLGKVI--GG 272
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 29.4 bits (67), Expect = 0.22
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 15/50 (30%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
H + L+ DEV TG GG E F + PD+ T K + GG
Sbjct: 232 HDALLVFDEVITGFRIAYGG------VQEKFGVT--PDLTTLGKII--GG 271
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 29.4 bits (67), Expect = 0.22
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 13/44 (29%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSK 44
G+ ++ DEV T GG + + PD+ K
Sbjct: 235 AGALVIYDEVITAFRFMYGG------AQDLLGVT--PDLTALGK 270
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 29.5 bits (67), Expect = 0.23
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 13/44 (29%)
Query: 6 HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSK 44
+G+ ++DEV +G G D++ PD+ +K
Sbjct: 234 YGALFILDEVISGFRVGNHG------MQALLDVQ--PDLTCLAK 269
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 29.5 bits (67), Expect = 0.26
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 14/49 (28%)
Query: 6 HGSALLIDEVQTG----GGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
G+ L+ DEV T GG E + D+ T K + GG
Sbjct: 266 CGALLIFDEVMTSRLSGGG------AQEMLGIS--ADLTTLGKYI--GG 304
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.9 bits (65), Expect = 0.40
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 14 EVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG---YFLK 54
+V+ G C + H DL D K + G YFLK
Sbjct: 154 KVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLK 197
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 28.3 bits (64), Expect = 0.51
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 18/56 (32%)
Query: 6 HGSALLIDEV-------QTGGGPCGKFWCHEHFDLEESPDI--VTFSKKM-QLGGY 51
H L++D+ + G G ++ P++ VTF K G
Sbjct: 197 HNGWLMVDDAHGTGVIGEQGRG------SCWLQKVK--PELLVVTFGKGFGVSGAA 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.2
Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 57/145 (39%)
Query: 2 YEKYHGSALLIDEVQTG--------GG-------------------PCGKFWCHEHFD-L 33
++K SAL V G GG + L
Sbjct: 137 FDKKSNSALF-RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 34 EESPDIVT-----FSKKMQLGGYFLKPEFVP------------------QQA-YRVFNTW 69
E F++ + + + P P Q A Y V
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 70 MG-DPGKVL-LLKGIIDTIHNENLL 92
+G PG++ LKG T H++ L+
Sbjct: 256 LGFTPGELRSYLKGA--TGHSQGLV 278
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 26.1 bits (56), Expect = 3.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMGDPGK-VLLLKGIIDTIHNENLLDR 94
GY LKPEF+ ++ + F+ + V+ I I + L D+
Sbjct: 621 GYLLKPEFM-RKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK 665
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG,
structural genomics, protein struc initiative, PSI;
1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Length = 355
Score = 25.7 bits (56), Expect = 4.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 46 MQLGGYFLKPEFVPQQAYRVFNTWMG 71
M YF+ PE+ P + TW+
Sbjct: 1 MSEPTYFMPPEWAPHAS-----TWLS 21
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 25.2 bits (55), Expect = 5.8
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
+ GKV++++ I+ N + ++ T D L+ + +G G+E
Sbjct: 296 LSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG-GRE 337
>3h7c_X Agmatine deiminase; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana}
PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Length = 383
Score = 25.4 bits (55), Expect = 5.9
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMG 71
GY++ E+ TW+G
Sbjct: 12 GYYMPAEWDSHAQ-----TWIG 28
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold
pseudosymmetric structure, agmatine degradation
pathway, covalent amidino adduct; HET: AGT; 1.65A
{Enterococcus faecalis} SCOP: d.126.1.6
Length = 389
Score = 25.0 bits (54), Expect = 7.5
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMG 71
G+ + EF PQ+ WM
Sbjct: 14 GFRMPGEFEPQEK-----VWMI 30
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural
genomics, PSI, protein structure initiative; 2.90A
{Streptococcus mutans} SCOP: d.126.1.6
Length = 377
Score = 25.0 bits (54), Expect = 9.1
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMG 71
G+ + EF Q+ WM
Sbjct: 14 GFRMPGEFEKQKQ-----IWML 30
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 24.9 bits (54), Expect = 9.3
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 25 FWCHEHFDLEESPDIVTFSKK 45
W +E FD PD T+ +
Sbjct: 351 MWVNEMFD-PNQPD--TYFLE 368
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 24.9 bits (53), Expect = 9.5
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 38 DIVTFSKKMQLGGYFLKPEFVPQQAYR---VFNTWMGDPGKVLLLKGIIDTIHNENLLDR 94
++ GG ++ + + + LLK +ID I ++ L
Sbjct: 306 SFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQELPSD 365
Query: 95 VQKTGDILLN 104
++ +
Sbjct: 366 PNRSPGYVDR 375
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.141 0.440
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,937,408
Number of extensions: 107237
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 72
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)