RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4800
(119 letters)
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 57.5 bits (138), Expect = 2e-11
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL------KPEFVP 59
+ + DEVQTG G GK C H++++ PD++ K + G Y + +
Sbjct: 219 YNVLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKALSGGHYPISAVLANDDIMLV 276
Query: 60 QQAYRVFNTWMGDP 73
+ +T+ G+P
Sbjct: 277 IKPGEHGSTYGGNP 290
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 54.0 bits (129), Expect = 2e-10
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP---- 59
H + DE+QTG G++ ++ ++ PDIV K + G Y +
Sbjct: 219 TRHQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKALSGGLYPVSAVLCDDDIM 276
Query: 60 --QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQ 96
+ F+T+ G+P + ++ + ENL +
Sbjct: 277 LTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENAD 315
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 47.0 bits (111), Expect = 6e-08
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
+ G+ L++DE+QTG G GK + EHF + PDI+T +K + GG L + ++
Sbjct: 208 QEKGALLILDEIQTGMGRTGKRFAFEHFGIV--PDILTLAKALG-GGVPLGVAVMREEVA 264
Query: 64 RV------FNTWMGDP 73
R T+ G+P
Sbjct: 265 RSMPKGGHGTTFGGNP 280
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 46.4 bits (109), Expect = 1e-07
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVP 59
HG L+ DEVQ+G G G + E + PD+ TF+K + L G + E +
Sbjct: 229 DEHGIMLIADEVQSGAGRTGTLFAMEQMGVA--PDLTTFAKSIAGGFPLAGVTGRAEVMD 286
Query: 60 Q-QAYRVFNTWMGDP 73
+ T+ G+P
Sbjct: 287 AVAPGGLGGTYAGNP 301
>d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]}
Length = 293
Score = 25.3 bits (55), Expect = 2.1
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES 113
W G + L L G +D+ LL G ++ +
Sbjct: 35 EWQGKGAEELGLSGEVDSKRFRELLAGNIGEGHRIMRSATRQDSKE 80
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 25.1 bits (54), Expect = 2.7
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMGDP 73
YF+ PE+ P + TW+ P
Sbjct: 4 TYFMPPEWAPHAS-----TWLSWP 22
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 372
Score = 25.1 bits (54), Expect = 2.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMGDP 73
GY++ E+ TW+G P
Sbjct: 8 GYYMPAEWDSHAQ-----TWIGWP 26
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 364
Score = 25.0 bits (54), Expect = 3.0
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMGDP 73
G+ + EF PQ+ WM P
Sbjct: 13 GFRMPGEFEPQEK-----VWMIWP 31
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase
{Streptococcus mutans [TaxId: 1309]}
Length = 369
Score = 24.7 bits (53), Expect = 3.9
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 50 GYFLKPEFVPQQAYRVFNTWMGDP 73
G+ + EF Q+ WM P
Sbjct: 13 GFRMPGEFEKQKQ-----IWMLWP 31
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 500
Score = 24.4 bits (53), Expect = 4.4
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 11 LIDEVQTGGGPCG 23
+I +++ G GP G
Sbjct: 167 VIVDIEVGLGPAG 179
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 24.6 bits (52), Expect = 4.7
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
Query: 6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
G L+ DE+ TG G GK + EH ++ PDI+ K + G L ++
Sbjct: 238 EGILLIADEIATGFGRTGKLFACEHAEIA--PDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 66 FN-----------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
+ T+MG+P + + + + +V L
Sbjct: 296 ISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLRE 345
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
[TaxId: 4120]}
Length = 498
Score = 24.4 bits (53), Expect = 5.3
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 11 LIDEVQTGGGPCG 23
I +++ G G G
Sbjct: 174 DIVDIEVGCGAAG 186
>d2r7ca2 d.216.1.1 (A:2-143) Rotavirus NSP2 fragment, N-terminal
domain {Simian 11 rotavirus [TaxId: 10923]}
Length = 142
Score = 23.7 bits (51), Expect = 5.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 78 LLKGIIDTIHNENLLDRVQKTGDIL 102
+L ++ H ENL+ R + DIL
Sbjct: 100 VLSRVVSIRHLENLVIRKENPQDIL 124
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 490
Score = 24.0 bits (52), Expect = 5.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 11 LIDEVQTGGGPCG 23
LI +++ G GP G
Sbjct: 168 LIIDIEVGLGPAG 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.141 0.440
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,466
Number of extensions: 21610
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 16
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)