RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4801
         (143 letters)



>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
           thermophilus [TaxId: 274]}
          Length = 118

 Score = 76.7 bits (189), Expect = 1e-19
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 11/109 (10%)

Query: 35  RWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYI 94
           + K     GA   +G+      V  K+PNSA+RK  +V+ + +G ++TA++P +G  + +
Sbjct: 17  KSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVR-LTSGYEVTAYIPGEG--HNL 73

Query: 95  EENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
           +E+  VL+     +G  V D+PGVR+ +V+   V   A  K++K+  RS
Sbjct: 74  QEHSVVLI-----RGGRVKDLPGVRYHIVR--GVYDAAGVKDRKKS-RS 114


>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit
          TTHA0048 {Thermus thermophilus [TaxId: 274]}
          Length = 116

 Score = 26.4 bits (58), Expect = 0.88
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 51 VLEKVGVEAKQPNSAIRKCVRVQLIKNG 78
           LE  G+EA+ P +AIR   +V L+   
Sbjct: 44 FLELQGLEARSPRAAIRGAFQVGLLPED 71


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 24.8 bits (54), Expect = 5.3
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGD 114
           QP+ ++R  +  +         A + R+G       NDEV++     +G  + D
Sbjct: 372 QPSLSVR--IWNKTPDEFLLRAAELTREGLGLPAYYNDEVIIPALVSRGLTLED 423


>d2pstx1 d.100.2.1 (X:8-68) Uncharacterized protein PA2412
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 61

 Score = 23.1 bits (50), Expect = 6.7
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 86 PRDGCLNYIEEN 97
           +  CL YIEE 
Sbjct: 36 LKKDCLAYIEEV 47


>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 135

 Score = 23.3 bits (50), Expect = 9.7
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 52 LEKVGVEAKQPNSAIRKCVRVQLIKNG 78
          +    + A      +R+ +R  LI + 
Sbjct: 64 INTDDIGAYGFKDILREALRFGLIGDM 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 547,980
Number of extensions: 23901
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 7
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)