BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4802
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 32 LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
L EKF+++KCR +G PDA V+V TVRALKMHGG P
Sbjct: 308 LGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 344
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 32 LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
L EKF+++KCR +G PDA V+V TVRALKMHGG P
Sbjct: 308 LGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 344
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
Length = 543
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 32 LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGG 67
L EKF + R G P+A VLV TVRALK HGG
Sbjct: 294 LGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGA 329
>pdb|2BOD|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a From
Thermobifida Fusca In Complex With Methyl Cellobiosyl-4-
Thio-Beta-Cellobioside
pdb|1TML|A Chain A, Crystal Structure Of The Catalytic Domain Of A
Thermophilic Endocellulase
Length = 286
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 66 GGPSVVS-GQPLKPEYTEVSTSTEHQGCIKGRGQFSP 101
G PS + G P+ + + E GCI G GQF P
Sbjct: 240 GTPSTTNTGDPMIDAFLWIKLPGEADGCIAGAGQFVP 276
>pdb|2BOE|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca
pdb|2BOF|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Cellotetrose
pdb|2BOG|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Methyl
Cellobiosyl- 4-Thio-Beta-Cellobioside
Length = 286
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 66 GGPSVVS-GQPLKPEYTEVSTSTEHQGCIKGRGQFSP 101
G PS + G P+ + + E GCI G GQF P
Sbjct: 240 GTPSTTNTGDPMIDAFLWIKLPGEADGCIAGAGQFVP 276
>pdb|3RU8|X Chain X, Structure Of An Hiv Epitope Scaffold In Complex With
Neutralizing Antibody B12 Fab
Length = 282
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 66 GGPSVVS-GQPLKPEYTEVSTSTEHQGCIKGRGQFSP 101
G PS + G P+ + + E GCI G GQF P
Sbjct: 228 GTPSTTNTGDPMIDAFLWIKLPGEADGCIAGAGQFVP 264
>pdb|3RPT|X Chain X, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
pdb|3RPT|A Chain A, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
Length = 282
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 66 GGPSVVS-GQPLKPEYTEVSTSTEHQGCIKGRGQFSP 101
G PS + G P+ + + E GCI G GQF P
Sbjct: 228 GTPSTTNTGDPMIDAFLWIKLPGEADGCIAGAGQFVP 264
>pdb|1FAI|L Chain L, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
pdb|2F19|L Chain L, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
Length = 214
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 40 IKCRTSGKI----------PDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEH 89
I CR S I PD V + ++H G PS SG +Y+ ++ EH
Sbjct: 21 ISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEH 80
Query: 90 Q 90
+
Sbjct: 81 E 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,275,453
Number of Sequences: 62578
Number of extensions: 119440
Number of successful extensions: 206
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 9
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)