Query psy4802
Match_columns 103
No_of_seqs 127 out of 945
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 18:08:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 1.5E-46 5E-51 319.4 6.1 91 4-102 264-356 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 1.5E-46 5.1E-51 320.2 6.1 91 4-102 278-370 (557)
3 1qxf_A GR2, 30S ribosomal prot 27.7 11 0.00037 24.3 -0.3 11 36-46 4-14 (66)
4 1tr0_A Stable protein 1; plant 23.3 35 0.0012 21.7 1.5 26 77-102 18-43 (108)
5 3j20_W 30S ribosomal protein S 22.8 15 0.00053 23.3 -0.3 11 36-46 12-22 (63)
6 1tks_A 3,4-dihydroxy-2-butanon 22.0 13 0.00044 28.2 -0.9 20 26-54 146-165 (204)
7 3mio_A DHBP synthase, 3,4-dihy 21.6 13 0.00045 28.1 -0.9 13 42-54 152-164 (206)
8 1k4i_A 3,4-dihydroxy-2-butanon 21.6 14 0.00047 28.7 -0.9 13 42-54 161-173 (233)
9 4g5s_E PINS homolog, G-protein 21.4 15 0.00052 19.7 -0.5 14 35-48 2-17 (26)
10 2qyc_A Ferredoxin-like protein 21.2 27 0.00093 22.1 0.6 25 77-101 14-38 (103)
11 1q4r_A Protein AT3G17210; cent 21.1 38 0.0013 21.8 1.4 26 77-102 20-45 (112)
12 1snn_A DHBP synthase, 3,4-dihy 20.7 13 0.00043 28.7 -1.2 13 42-54 172-184 (227)
13 1qzm_A ATP-dependent protease 20.1 11 0.00038 25.0 -1.5 13 90-102 49-61 (94)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=1.5e-46 Score=319.41 Aligned_cols=91 Identities=29% Similarity=0.312 Sum_probs=89.1
Q ss_pred CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802 4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT 81 (103)
Q Consensus 4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~ 81 (103)
.||||||++||+.||+++||+|||||| |||||||||||||++||+|||||||||+||||||||++ +++|.
T Consensus 264 IAHGcnSviAtk~ALklaDyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~--------~~~l~ 335 (543)
T 3do6_A 264 IAHGTNSIIATKMAMKLSEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGAN--------LKNIH 335 (543)
T ss_dssp SSCCBCCHHHHHHHHHHCSEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCC--------GGGTT
T ss_pred ccccchHHHHHHHHHhccCeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCC--------hhhcC
Confidence 589999999999999999999999999 99999999999999999999999999999999999999 69999
Q ss_pred cCCHHHHHHhHhhHHHhhccC
Q psy4802 82 EVSTSTEHQGCIKGRGQFSPI 102 (103)
Q Consensus 82 ~enl~al~kG~~NL~kHIeNi 102 (103)
+||+++|++||+||+|||+|+
T Consensus 336 ~enl~al~~G~~NL~kHIen~ 356 (543)
T 3do6_A 336 EENLEALKEGFKNLRVHVENL 356 (543)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999996
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=1.5e-46 Score=320.24 Aligned_cols=91 Identities=34% Similarity=0.485 Sum_probs=89.1
Q ss_pred CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802 4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT 81 (103)
Q Consensus 4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~ 81 (103)
.||||||++||+.||+++||+|||||| |||||||||||||++||+|||||||||+||||||||++ +++|.
T Consensus 278 IAHGcnSviAtk~ALkl~dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~--------~~~l~ 349 (557)
T 3pzx_A 278 IAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLA 349 (557)
T ss_dssp SSCCBCCHHHHHHHHHHCSEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCC--------GGGTT
T ss_pred cccCchHHHHHHHHHhccCeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCC--------hhhcC
Confidence 589999999999999999999999999 99999999999999999999999999999999999999 69999
Q ss_pred cCCHHHHHHhHhhHHHhhccC
Q psy4802 82 EVSTSTEHQGCIKGRGQFSPI 102 (103)
Q Consensus 82 ~enl~al~kG~~NL~kHIeNi 102 (103)
+||+++|++||+||+|||+|+
T Consensus 350 ~en~~al~~G~~NL~kHien~ 370 (557)
T 3pzx_A 350 TENLEALREGFANLEKHIENI 370 (557)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999996
No 3
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=27.74 E-value=11 Score=24.25 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.6
Q ss_pred hhcccccccCC
Q psy4802 36 KFFNIKCRTSG 46 (103)
Q Consensus 36 KF~dIKcR~sG 46 (103)
+|+|+||+-=+
T Consensus 4 ~Fm~VKCp~C~ 14 (66)
T 1qxf_A 4 RFVKVKCPDCE 14 (66)
T ss_dssp CEEEEECTTTC
T ss_pred eeEEEECCCCC
Confidence 69999998543
No 4
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=23.26 E-value=35 Score=21.73 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=20.2
Q ss_pred CCccCcCCHHHHHHhHhhHHHhhccC
Q psy4802 77 KPEYTEVSTSTEHQGCIKGRGQFSPI 102 (103)
Q Consensus 77 ~~~~~~enl~al~kG~~NL~kHIeNi 102 (103)
+++.++++++.+.+++..|...|.-|
T Consensus 18 k~~~~~~~~~~~~~~l~~L~~~ip~i 43 (108)
T 1tr0_A 18 KDEITREQIDNYINDYTNLLDLIPSM 43 (108)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCce
Confidence 45566677899999999999877654
No 5
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.85 E-value=15 Score=23.30 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=8.5
Q ss_pred hhcccccccCC
Q psy4802 36 KFFNIKCRTSG 46 (103)
Q Consensus 36 KF~dIKcR~sG 46 (103)
+|+|+||+-=+
T Consensus 12 ~Fm~VkCp~C~ 22 (63)
T 3j20_W 12 RFLRVKCIDCG 22 (63)
T ss_dssp CEEEEECSSSC
T ss_pred cEEEEECCCCC
Confidence 69999998543
No 6
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=21.96 E-value=13 Score=28.18 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.0
Q ss_pred cccCcccchhhhcccccccCCCCCCeEEE
Q psy4802 26 WPSKYWLWMEKFFNIKCRTSGKIPDAVVL 54 (103)
Q Consensus 26 ~~~~~dLGaEKF~dIKcR~sGl~PdavVL 54 (103)
||+.-|| ||.+|+.|-+|+.
T Consensus 146 TEAavdL---------arLAGl~Pa~vic 165 (204)
T 1tks_A 146 TEAAVQL---------STLAGLQPAGVIC 165 (204)
T ss_dssp HHHHHHH---------HHHTTSCSBEEEE
T ss_pred HHHHHHH---------HHHcCCCceEEEE
Confidence 6666677 9999999987753
No 7
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=21.59 E-value=13 Score=28.11 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=10.8
Q ss_pred cccCCCCCCeEEE
Q psy4802 42 CRTSGKIPDAVVL 54 (103)
Q Consensus 42 cR~sGl~PdavVL 54 (103)
||.+|+.|-+|+.
T Consensus 152 arlAGl~Pa~vic 164 (206)
T 3mio_A 152 ARMAGLQPAGAIC 164 (206)
T ss_dssp HHHTTSCSBEEEE
T ss_pred HHHcCCCceEEEE
Confidence 9999999987643
No 8
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=21.55 E-value=14 Score=28.66 Aligned_cols=13 Identities=54% Similarity=0.894 Sum_probs=11.1
Q ss_pred cccCCCCCCeEEE
Q psy4802 42 CRTSGKIPDAVVL 54 (103)
Q Consensus 42 cR~sGl~PdavVL 54 (103)
||.+|+.|-+|+.
T Consensus 161 arLAGl~PagVic 173 (233)
T 1k4i_A 161 CRLAGKRPVAVIS 173 (233)
T ss_dssp HHHTTCCSBEEEE
T ss_pred HHHcCCCceEEEE
Confidence 9999999987753
No 9
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=21.37 E-value=15 Score=19.74 Aligned_cols=14 Identities=50% Similarity=0.826 Sum_probs=8.8
Q ss_pred hhhccc--ccccCCCC
Q psy4802 35 EKFFNI--KCRTSGKI 48 (103)
Q Consensus 35 EKF~dI--KcR~sGl~ 48 (103)
|-|||+ ||..|-+.
T Consensus 2 d~ff~ml~kcq~srld 17 (26)
T 4g5s_E 2 EDFFDILVKCQGSRLD 17 (26)
T ss_dssp -CHHHHHHHHSCCCCS
T ss_pred hhHHHHHHHhcccccc
Confidence 457774 88877653
No 10
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=21.19 E-value=27 Score=22.07 Aligned_cols=25 Identities=4% Similarity=-0.152 Sum_probs=19.8
Q ss_pred CCccCcCCHHHHHHhHhhHHHhhcc
Q psy4802 77 KPEYTEVSTSTEHQGCIKGRGQFSP 101 (103)
Q Consensus 77 ~~~~~~enl~al~kG~~NL~kHIeN 101 (103)
+++.++++.+.+.+++..|...|.-
T Consensus 14 k~~~~~~~~~~~~~~l~~L~~~ip~ 38 (103)
T 2qyc_A 14 DDGIDAGFFRTVDEYVARMKRECDG 38 (103)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHhhhcCCC
Confidence 4566667799999999999987754
No 11
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=21.10 E-value=38 Score=21.78 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=20.2
Q ss_pred CCccCcCCHHHHHHhHhhHHHhhccC
Q psy4802 77 KPEYTEVSTSTEHQGCIKGRGQFSPI 102 (103)
Q Consensus 77 ~~~~~~enl~al~kG~~NL~kHIeNi 102 (103)
+++.++++++.+.+++..|...|.-|
T Consensus 20 k~~~~~~~~~~~~~~l~~L~~~ip~i 45 (112)
T 1q4r_A 20 KDGVSPEKIEELIKGYANLVNLIEPM 45 (112)
T ss_dssp CTTCCHHHHHHHHHHHHTHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHhhhCCce
Confidence 45566677899999999999877644
No 12
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=20.71 E-value=13 Score=28.66 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=10.7
Q ss_pred cccCCCCCCeEEE
Q psy4802 42 CRTSGKIPDAVVL 54 (103)
Q Consensus 42 cR~sGl~PdavVL 54 (103)
||.+|++|-+|+.
T Consensus 172 arlAGl~Pa~Vic 184 (227)
T 1snn_A 172 AELANLVPITTIC 184 (227)
T ss_dssp HHHTTSCSEEEEE
T ss_pred HHHcCCCceEEEE
Confidence 9999999976543
No 13
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=20.12 E-value=11 Score=25.05 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=10.8
Q ss_pred HhHhhHHHhhccC
Q psy4802 90 QGCIKGRGQFSPI 102 (103)
Q Consensus 90 kG~~NL~kHIeNi 102 (103)
+|..||+|+|..+
T Consensus 49 aGVRnLer~i~~i 61 (94)
T 1qzm_A 49 AGVRGLEREISKL 61 (94)
T ss_dssp SSSHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5889999998764
Done!