RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4802
         (103 letters)



>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
           thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
           3rbo_A* 3sin_A* 1eg7_A
          Length = 557

 Score = 78.8 bits (195), Expect = 7e-19
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
           L  EKF+++KCR +G  PDA V+V TVRALKMHGG P
Sbjct: 308 LGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 344


>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
           formyltetrahydrofolate synthetase, structural genomics;
           HET: MSE; 1.85A {Thermotoga maritima}
          Length = 543

 Score = 78.0 bits (193), Expect = 1e-18
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
           L  EKF +   R  G  P+A VLV TVRALK HGG  
Sbjct: 294 LGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGAN 330


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 19/70 (27%)

Query: 17  ALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVR----ALKMHGGGPSVVS 72
            LL+L  ++  +K W      FN+ C+          L+TT R       +     + +S
Sbjct: 246 CLLVLL-NVQNAKAW----NAFNLSCKI---------LLTT-RFKQVTDFLSAATTTHIS 290

Query: 73  GQPLKPEYTE 82
                   T 
Sbjct: 291 LDHHSMTLTP 300


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 17/79 (21%)

Query: 11  SAEIVYALLILEGHLWPSKY--------WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALK 62
           S  +V A+ I E   W S +         L    FF I  R     P+  +  + +    
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVL----FF-IGVRCYEAYPNTSLPPSILEDSL 328

Query: 63  MHG-GGPS---VVSGQPLK 77
            +  G PS    +S    +
Sbjct: 329 ENNEGVPSPMLSISNLTQE 347


>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein
           structure initiative, midwest center for structural
           genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae
           subsp} PDB: 3nzr_A 3lm7_A
          Length = 249

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 45  SGKIPDAVVLVTTVRALKMHGGGPSV----VSGQPLKPEYTEVSTSTEHQG 91
           S    D +V + T  AL    GG S+    + G   + E+  V+ +     
Sbjct: 137 SSGAADGIVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHD 187


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.437 

Gapped
Lambda     K      H
   0.267   0.0791    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,544,850
Number of extensions: 77408
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 8
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)