Query psy4803
Match_columns 235
No_of_seqs 200 out of 1975
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 18:09:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1567|consensus 100.0 1.6E-54 3.4E-59 357.1 13.4 205 3-235 127-344 (344)
2 PTZ00211 ribonucleoside-diphos 100.0 1.3E-41 2.7E-46 298.3 14.2 208 3-235 114-330 (330)
3 PLN02492 ribonucleoside-diphos 100.0 4.8E-41 1E-45 294.1 14.1 204 3-235 103-324 (324)
4 PRK09101 nrdB ribonucleotide-d 100.0 1.8E-36 3.8E-41 269.5 11.3 145 82-229 205-371 (376)
5 PRK07209 ribonucleotide-diphos 100.0 1.4E-35 3.1E-40 263.2 15.0 194 3-221 144-366 (369)
6 COG0208 NrdF Ribonucleotide re 100.0 2.1E-34 4.4E-39 251.1 15.0 145 82-230 187-347 (348)
7 PRK12759 bifunctional gluaredo 100.0 1.3E-34 2.8E-39 260.4 13.4 188 3-222 192-402 (410)
8 PRK09614 nrdF ribonucleotide-d 100.0 1.3E-33 2.8E-38 247.5 13.1 190 3-220 104-314 (324)
9 PRK13966 nrdF2 ribonucleotide- 100.0 2.8E-32 6.1E-37 238.2 12.4 195 3-235 106-322 (324)
10 PRK13965 ribonucleotide-diphos 100.0 1.6E-31 3.4E-36 234.5 11.1 188 3-220 117-325 (335)
11 PRK13967 nrdF1 ribonucleotide- 100.0 3.8E-29 8.3E-34 218.4 12.3 195 3-231 104-322 (322)
12 cd01049 RNRR2 Ribonucleotide R 99.9 1.6E-27 3.5E-32 205.8 11.9 173 3-199 93-286 (288)
13 PF00268 Ribonuc_red_sm: Ribon 99.9 3.3E-27 7.2E-32 203.2 7.2 168 3-197 101-281 (281)
14 KOG0819|consensus 99.7 4.9E-17 1.1E-21 138.5 8.6 148 22-170 80-313 (321)
15 KOG0819|consensus 99.7 7.8E-17 1.7E-21 137.2 8.9 105 30-136 18-124 (321)
16 PRK08326 ribonucleotide-diphos 99.7 5.5E-16 1.2E-20 135.1 11.9 101 82-186 174-289 (311)
17 cd07911 RNRR2_Rv0233_like Ribo 99.7 7.5E-16 1.6E-20 132.6 12.4 102 82-186 155-269 (280)
18 PF00191 Annexin: Annexin; In 99.6 1E-15 2.2E-20 103.4 7.7 66 32-97 1-66 (66)
19 smart00335 ANX Annexin repeats 99.3 1.3E-11 2.9E-16 79.5 6.2 53 45-97 1-53 (53)
20 PF08671 SinI: Anti-repressor 77.4 1.2 2.5E-05 24.9 0.8 27 147-173 3-29 (30)
21 PF06556 ASFV_p27: IAP-like pr 71.9 6.4 0.00014 28.6 3.6 60 157-217 4-82 (131)
22 PF10925 DUF2680: Protein of u 45.8 82 0.0018 20.4 5.4 51 133-184 7-58 (59)
23 PRK13456 DNA protection protei 40.0 1.2E+02 0.0026 24.6 6.3 65 130-197 16-92 (186)
24 PF11264 ThylakoidFormat: Thyl 36.9 2.1E+02 0.0045 23.8 7.4 50 5-57 54-111 (216)
25 PHA03154 hypothetical protein; 33.0 1.4E+02 0.003 25.8 5.8 39 137-177 236-275 (304)
26 TIGR01114 mtrH N5-methyltetrah 30.1 60 0.0013 28.4 3.3 45 131-176 50-94 (314)
27 PLN03060 inositol phosphatase- 26.4 2.7E+02 0.0059 22.9 6.3 22 6-28 58-80 (206)
28 PRK14047 putative methyltransf 26.3 74 0.0016 27.8 3.2 45 131-176 50-94 (310)
29 PF02007 MtrH: Tetrahydrometha 22.2 1.1E+02 0.0024 26.6 3.5 44 131-175 45-88 (296)
No 1
>KOG1567|consensus
Probab=100.00 E-value=1.6e-54 Score=357.07 Aligned_cols=205 Identities=56% Similarity=0.867 Sum_probs=199.1
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChH----HHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCC
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVC----SLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGH 76 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~----~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~ 76 (235)
|| +||++||+|++||.+|+.+| +|.+.|+ +||. ++|++...+.+.+.|+ .+.++
T Consensus 127 HSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWa-----lrWI~d~~s~faeRlv-----AFAav---------- 186 (344)
T KOG1567|consen 127 HSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWA-----LRWISDKDSLFAERLV-----AFAAV---------- 186 (344)
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHH-----HHHhcCCCccHHHHHH-----HHHHH----------
Confidence 77 99999999999999999999 9999999 8888 9999998999999999 88888
Q ss_pred cHHHHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Q psy4803 77 ELDEAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKPSEERIKSIVLDAVLVEQEF 149 (235)
Q Consensus 77 ~l~~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~~~~~i~~i~~~av~iE~~f 149 (235)
+|+.|||+| +++|| ||+.+++.||+||+|+||+|+|+++.+|+.+|..+.|.+|+.+||+||++|
T Consensus 187 -----EGIFFSgsFasIFWLKKRGlM---PGLTfSNELIsrdeglh~dFacll~~~l~~kp~~~ri~eII~eAV~IEqef 258 (344)
T KOG1567|consen 187 -----EGIFFSGSFASIFWLKKRGLM---PGLTFSNELISRDEGLHCDFACLLFSHLKKKPNEERIEEIITEAVEIEQEF 258 (344)
T ss_pred -----hhhhcccchhhhhhhhhcCCC---CccccchhhhhhccCCcccHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 78999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHhhhhcCCCCccccccchhhccccccCCCCCce
Q psy4803 150 LTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVF 229 (235)
Q Consensus 150 ~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~~np~~w~~~~~~~~~~nffe~~~~~Y~~~~~~~~~~~~~~ 229 (235)
...++|..++|||+.+|.+||+|+||++|..||+++.|+++||++||+.++..++|||||+||++||+.+++.+..+++|
T Consensus 259 ~~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Yn~~NPFdfMEnISl~GKTNFFEKrVseYQk~~vMs~~~~~~F 338 (344)
T KOG1567|consen 259 LTEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYNAENPFDFMENISLAGKTNFFEKRVSEYQKAGVMSNEPENVF 338 (344)
T ss_pred HHhccchhhhccCHHHHHHHHHHHHHHHHHHhCccceecCCCchHHHHHhhhccccchHHhhhHHhhhchhccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777899
Q ss_pred eccCCC
Q psy4803 230 RLDEQF 235 (235)
Q Consensus 230 ~~~~~~ 235 (235)
++|+||
T Consensus 339 ~ld~dF 344 (344)
T KOG1567|consen 339 TLDADF 344 (344)
T ss_pred ccccCC
Confidence 999998
No 2
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=298.28 Aligned_cols=208 Identities=49% Similarity=0.751 Sum_probs=176.2
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChHHHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHHH
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVCSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDE 80 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~~ 80 (235)
|+ +||++++++++||.+++++| .+.+.|+...+ ..-..++..++++ +.+.++ ....+
T Consensus 114 Hs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K-~~~~~~~~~~~~~-~~~~lv-----~~~~l-------------- 172 (330)
T PTZ00211 114 HSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKK-AEWAAKWINSSNS-FAERLV-----AFAAV-------------- 172 (330)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHH-HHHHHHHHhcchH-HHHHHH-----HHHHh--------------
Confidence 87 99999999999999999999 99999971111 1111233322322 333322 12222
Q ss_pred HhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhh
Q psy4803 81 AIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKPSEERIKSIVLDAVLVEQEFLTEA 153 (235)
Q Consensus 81 ~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~~~~~i~~i~~~av~iE~~f~~~~ 153 (235)
++..|+++| ++++| ||++.++++|.|||++|+.+++.+++.++.+++.+++.+++.+||++|.+|++++
T Consensus 173 -Egi~F~sgF~~~~~l~~~g~m---~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~~~~~~~ 248 (330)
T PTZ00211 173 -EGIFFSGSFCAIFWLKKRGLM---PGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIEREFICDA 248 (330)
T ss_pred -hhHHhhhhHHHHHHHHhcCCC---cchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999 56777 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHhhhhcCCCCccccccchhhccccccCCCCCceeccC
Q psy4803 154 LPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDE 233 (235)
Q Consensus 154 ~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~~np~~w~~~~~~~~~~nffe~~~~~Y~~~~~~~~~~~~~~~~~~ 233 (235)
+|.+++|||.+.|++||+|+||+||++||++++|+++||+|||+.+..++++||||+++++|++++...+..+..|+||+
T Consensus 249 ~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~~~~~~~~~~ 328 (330)
T PTZ00211 249 LPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYNSKNPFDWMDMISLQGKTNFFEKRVGEYQKAGVMAERTSKVFSLDA 328 (330)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCchHHHhccccccccccccchhhhhccccccccccccccccC
Confidence 99889999999999999999999999999999999999999999888888999999999999999877654456799999
Q ss_pred CC
Q psy4803 234 QF 235 (235)
Q Consensus 234 ~~ 235 (235)
||
T Consensus 329 df 330 (330)
T PTZ00211 329 DF 330 (330)
T ss_pred CC
Confidence 98
No 3
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=4.8e-41 Score=294.07 Aligned_cols=204 Identities=52% Similarity=0.819 Sum_probs=174.8
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChH----HHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCC
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVC----SLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGH 76 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~----~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~ 76 (235)
|+ +||++++++++||.+++++| .+.+.|+ .+|. .++..+. ..+.+.+. ....+
T Consensus 103 H~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~-----~~~~~~~-~~~~~~lv-----a~~~l---------- 161 (324)
T PLN02492 103 HSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWA-----LRWIDSS-ASFAERLV-----AFACV---------- 161 (324)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHH-----HHHHhhh-HHHHHHHH-----HHHhh----------
Confidence 87 99999999999999999999 9999997 2222 2332222 22333332 12222
Q ss_pred cHHHHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Q psy4803 77 ELDEAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKPSEERIKSIVLDAVLVEQEF 149 (235)
Q Consensus 77 ~l~~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~~~~~i~~i~~~av~iE~~f 149 (235)
++..|+++| ++++| ||++.++++|.|||++|+.+++.+++.++.+++.+++.+++.+||++|.+|
T Consensus 162 -----Egi~F~sgF~~~~~l~~~g~m---~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~l~~eav~~E~~~ 233 (324)
T PLN02492 162 -----EGIFFSGSFCAIFWLKKRGLM---PGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEF 233 (324)
T ss_pred -----hHHhhhhhHHHHHHHHHcCCC---cchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999 56777 999999999999999999999999999999889999999999999999999
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHhhhhcCCCCccccccchhhccccccCC-----
Q psy4803 150 LTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQ----- 224 (235)
Q Consensus 150 ~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~~np~~w~~~~~~~~~~nffe~~~~~Y~~~~~~~~~----- 224 (235)
+++++|.+++|||.+.|++||+|+||+||.+||++++|+++||+|||+.++.++++||||+++++|++++.+.+.
T Consensus 234 ~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~~~~~~ 313 (324)
T PLN02492 234 VCDALPCALVGMNADLMSQYIEFVADRLLVALGYEKVYNVVNPFDWMELISLQGKTNFFEKRVGEYQKAGVMSSLNGGGA 313 (324)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCchHHHhccccccccccccchhhhhccccccccccccc
Confidence 999999889999999999999999999999999999999999999999888888999999999999999886543
Q ss_pred CCCceeccCCC
Q psy4803 225 DNQVFRLDEQF 235 (235)
Q Consensus 225 ~~~~~~~~~~~ 235 (235)
.+..|+||+||
T Consensus 314 ~~~~~~~~~df 324 (324)
T PLN02492 314 DNHVFSLDEDF 324 (324)
T ss_pred ccceeccCCCC
Confidence 24469999998
No 4
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.8e-36 Score=269.49 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=130.9
Q ss_pred hhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhC--C-C--------cHHHHHHHHHHHH
Q psy4803 82 IGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVN--K-P--------SEERIKSIVLDAV 143 (235)
Q Consensus 82 i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~--~-~--------~~~~i~~i~~~av 143 (235)
++..|+++| ++++| +|.+.++++|.|||++|+.+.+.+++.++. + | ..++|++++.+||
T Consensus 205 Egi~FyssFa~~~~l~~~g~m---~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~~~e~p~~~~~~~~~~~~v~~l~~eav 281 (376)
T PRK09101 205 EAIRFYVSFACSFAFAERELM---EGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAA 281 (376)
T ss_pred HHHHHHHHHHHHHHHhhCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhHHHHHHHHHHHHHHH
Confidence 889999999 67777 999999999999999999999999999984 2 2 2468899999999
Q ss_pred HHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCchHHH-hhhhcC-CCCccccccchhhccc
Q psy4803 144 LVEQEFLTEALPVK-LIGMNCDLMKQYIEYVADRLLVDLGCSKHYFA-ENPFDFME-NISLEG-KTNFFERKVGEYQKSS 219 (235)
Q Consensus 144 ~iE~~f~~~~~~~~-~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~-~np~~w~~-~~~~~~-~~nffe~~~~~Y~~~~ 219 (235)
++|.+|++++++.+ ++|||++.+++||+|+||+||.+||++++|++ +||+|||+ +++.++ ++||||+++++|++++
T Consensus 282 e~E~~~~~~l~~~~~i~Gl~~~~~~~Yi~Y~An~rL~~LG~~~~f~~~~nP~~wm~~~~~~~~~~~nffE~~~~~Y~~~~ 361 (376)
T PRK09101 282 EQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQ 361 (376)
T ss_pred HHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHhcCCccccccccccHHHHhhcc
Confidence 99999999999765 99999999999999999999999999999986 89999997 566665 9999999999999999
Q ss_pred cccCCCCCce
Q psy4803 220 VMADQDNQVF 229 (235)
Q Consensus 220 ~~~~~~~~~~ 229 (235)
+..++.++.|
T Consensus 362 ~~~~~~~~~~ 371 (376)
T PRK09101 362 IDSEVDTDDL 371 (376)
T ss_pred CcccCChhhh
Confidence 9988776554
No 5
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=1.4e-35 Score=263.24 Aligned_cols=194 Identities=22% Similarity=0.346 Sum_probs=155.9
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChH----HHHH-HHHhhhcc----CCCc--HHHHHHHHhCCCHHHHHHHHHH
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVC----SLWF-EARRGELM----LGTD--ESTFNAILCTRSYPQLAEVFSQ 69 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~----~d~~-~l~~a~~~----~g~d--e~~~~~iL~~rs~~~l~~i~~~ 69 (235)
|+ +||++++++..|+.+ +| ++.+.|+ .+|. ........ .++. ...+.+.++ ....+
T Consensus 144 Hs~sYs~ildtl~~~~~e---~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv-----a~~~i--- 212 (369)
T PRK07209 144 HTHAYQYIVESLGLDEGE---IFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLI-----AFYCI--- 212 (369)
T ss_pred HHHHHHHHHHHhCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH-----HHHHH---
Confidence 88 999999999988865 88 9999988 2221 00011000 0111 122333332 22221
Q ss_pred HHHhhCCcHHHHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCC-------cHHHH
Q psy4803 70 YYTLTGHELDEAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKP-------SEERI 135 (235)
Q Consensus 70 y~~~~g~~l~~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~-------~~~~i 135 (235)
.++..|+++| ++++| ||+..++++|.|||++|+.+++.+++.++.+. ..++|
T Consensus 213 -----------lEGi~FysgFa~~~~l~r~g~M---~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~~~~~~~~v 278 (369)
T PRK07209 213 -----------MEGIFFYVGFTQILSLGRQNKM---TGIAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTAEFQAEI 278 (369)
T ss_pred -----------HHHHHHHHHHHHHHHhhhcCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHH
Confidence 2889999999 56677 99999999999999999999999999998533 26789
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCCchHHH-hhhhcCCCCccccccc
Q psy4803 136 KSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHY-FAENPFDFME-NISLEGKTNFFERKVG 213 (235)
Q Consensus 136 ~~i~~~av~iE~~f~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y-~~~np~~w~~-~~~~~~~~nffe~~~~ 213 (235)
++++++||++|.+|+++++|.+++|||++++++||+|+||+||.+||++++| +++||+|||+ +++.++++||||+||+
T Consensus 279 ~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~~LG~~~~y~~~~nP~~wm~~~~~~~~~tnFFE~rvt 358 (369)
T PRK07209 279 RELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNFFETRVI 358 (369)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcHhHHHHHhcccccCcccccchh
Confidence 9999999999999999999989999999999999999999999999999999 8899999995 7788889999999999
Q ss_pred hhhccccc
Q psy4803 214 EYQKSSVM 221 (235)
Q Consensus 214 ~Y~~~~~~ 221 (235)
+|++++.+
T Consensus 359 ~Y~~~~~~ 366 (369)
T PRK07209 359 EYQTGGAL 366 (369)
T ss_pred hhhcccCc
Confidence 99999764
No 6
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-34 Score=251.12 Aligned_cols=145 Identities=32% Similarity=0.501 Sum_probs=130.4
Q ss_pred hhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCC-------cHHHHHHHHHHHHHHHH
Q psy4803 82 IGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKP-------SEERIKSIVLDAVLVEQ 147 (235)
Q Consensus 82 i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~-------~~~~i~~i~~~av~iE~ 147 (235)
++..|+|+| ++++| ||+.+.+++|.|||++|+.+.+.+++.++.+. .++++.+++.+||++|+
T Consensus 187 Egi~FYsGFa~~~~l~~r~kM---~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~l~~~ave~E~ 263 (348)
T COG0208 187 EGILFYSGFAYPLYLARRGKM---PGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYDLFKEAVELEK 263 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHHHHHHH
Confidence 889999999 78888 99999999999999999999999999888653 36778999999999999
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCchHHH-hhhhcCCCCccccccchhhccccccCCC
Q psy4803 148 EFLTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFAE-NPFDFME-NISLEGKTNFFERKVGEYQKSSVMADQD 225 (235)
Q Consensus 148 ~f~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~~-np~~w~~-~~~~~~~~nffe~~~~~Y~~~~~~~~~~ 225 (235)
+|..++++ |++|||.+++++||+|+||+||++||++|+|+.. ||+|||+ +.+..+++||||+++++|++++.....+
T Consensus 264 ~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~NP~~~~~~~~~~~~~~dFFe~~~ssY~~~~~~~~~~ 342 (348)
T COG0208 264 EYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWIELSLSADEKTDFFEGRVSSYQKGSVASETE 342 (348)
T ss_pred HHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHhhccccccCCccccccchHHhhhcccCCc
Confidence 99999999 7999999999999999999999999999999765 9999998 4666799999999999999998665444
Q ss_pred CCcee
Q psy4803 226 NQVFR 230 (235)
Q Consensus 226 ~~~~~ 230 (235)
++++.
T Consensus 343 ~dD~~ 347 (348)
T COG0208 343 DDDWD 347 (348)
T ss_pred ccccc
Confidence 45443
No 7
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=1.3e-34 Score=260.43 Aligned_cols=188 Identities=22% Similarity=0.262 Sum_probs=152.2
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChH----HHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCC
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVC----SLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGH 76 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~----~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~ 76 (235)
|+ +||+++++++.++. .+ ++.+.|+ .+|. .++...+...+.+.++ ....+
T Consensus 192 HsesYs~il~tl~~~~~----~~~~~~~~~~~~~k~~~~-----~~~~~~~~~~~~~~lv-----~~~~l---------- 247 (410)
T PRK12759 192 HQRAYALLNDTLGLPDS----EYHAFLEYKAMTDKIDFM-----MDADPTTRRGLGLCLA-----KTVFN---------- 247 (410)
T ss_pred HHHHHHHHHHHhCCCHH----HHHHHHhhHHHHHHHHHH-----HhcCcchHHHHHHHHH-----HHHHH----------
Confidence 88 99999999988755 37 7777776 2222 1222222223333332 11222
Q ss_pred cHHHHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCC-------CcHHHHHHHHHHH
Q psy4803 77 ELDEAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNK-------PSEERIKSIVLDA 142 (235)
Q Consensus 77 ~l~~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~-------~~~~~i~~i~~~a 142 (235)
++..|+|+| ++++| ||+..++++|.|||++|+.+.+.|++.+..+ +..++|++++++|
T Consensus 248 -----Egi~Fys~Fa~~~~l~~~g~m---~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~v~~~~~ea 319 (410)
T PRK12759 248 -----EGVALFASFAMLLNFQRFGKM---KGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKA 319 (410)
T ss_pred -----HHHHHHHHHHHHHHHHhcCCC---eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcChHHHHHHHHHHHHH
Confidence 889999999 56777 9999999999999999999999999998653 2367899999999
Q ss_pred HHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCchHHHhhhh-cCCCCccccccchhhccc
Q psy4803 143 VLVEQEFLTEALPVK-LIGMNCDLMKQYIEYVADRLLVDLGCSKHYFA-ENPFDFMENISL-EGKTNFFERKVGEYQKSS 219 (235)
Q Consensus 143 v~iE~~f~~~~~~~~-~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~-~np~~w~~~~~~-~~~~nffe~~~~~Y~~~~ 219 (235)
|++|++|++++++.+ ++|+|++.+++||+|+||+||.+||++|+|++ +||+|||+++.. .+++||||+++++|++++
T Consensus 320 ve~E~~~~~~~~~~~~i~Gl~~~~~~~Yiky~an~~L~~LG~~~~f~~~~nP~~w~~~~~~~~~~~nFFE~rvt~Y~~~~ 399 (410)
T PRK12759 320 VELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVAG 399 (410)
T ss_pred HHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCChhHHHHHhccccccCCccccHHHHhhcc
Confidence 999999999999875 99999999999999999999999999999986 899999997654 579999999999999998
Q ss_pred ccc
Q psy4803 220 VMA 222 (235)
Q Consensus 220 ~~~ 222 (235)
.+.
T Consensus 400 ~~~ 402 (410)
T PRK12759 400 LTG 402 (410)
T ss_pred ccc
Confidence 654
No 8
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.3e-33 Score=247.48 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=149.1
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChHHHHHHHHhhhccCCC-cHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHH
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVCSLWFEARRGELMLGT-DESTFNAILCTRSYPQLAEVFSQYYTLTGHELD 79 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~~d~~~l~~a~~~~g~-de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~ 79 (235)
|+ +||++++++..++ ++..+| .+.+.|+...+ ..-..++.+. ....+...+. ....
T Consensus 104 H~~sYs~il~tl~~~~-~~~~~f~~~~~~p~l~~K-~~~i~~~~~~~~~~~~~~~~~-----~~~~-------------- 162 (324)
T PRK09614 104 HAKSYSYIFSTLCSPE-EIDEAFEWAEENPYLQKK-ADIIQDFYEPLKKKILRKAAV-----ASVF-------------- 162 (324)
T ss_pred HHHHHHHHHHHcCCCh-hHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHhHHHHHHH-----HHHH--------------
Confidence 88 9999999996554 447788 88888871111 0001111110 0011222222 1121
Q ss_pred HHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCCc-------HHHHHHHHHHHHHH
Q psy4803 80 EAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKPS-------EERIKSIVLDAVLV 145 (235)
Q Consensus 80 ~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~~-------~~~i~~i~~~av~i 145 (235)
.++..|+++| ++++| ||++.++++|.|||++|+.+++.+++.++.+.+ .++|++++++||++
T Consensus 163 -lEgi~f~sgF~~~~~l~~~g~m---~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~ 238 (324)
T PRK09614 163 -LEGFLFYSGFYYPLYLARQGKM---TGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYEN 238 (324)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCc---ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHH
Confidence 2888999999 56777 999999999999999999999999999986544 47889999999999
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCCchHHHhhh-h-cCCCCccccccchhhcccc
Q psy4803 146 EQEFLTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYF--AENPFDFMENIS-L-EGKTNFFERKVGEYQKSSV 220 (235)
Q Consensus 146 E~~f~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~--~~np~~w~~~~~-~-~~~~nffe~~~~~Y~~~~~ 220 (235)
|.+|++++++ ++| +++.+++||+|+||+||++||++|+|+ ++||+|||+... . .+++||||+++++|++++.
T Consensus 239 E~~~~~~~~~--~~G-~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~ 314 (324)
T PRK09614 239 EEAYTELLYD--IVG-LAEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHDFFEGKGTSYVKGAT 314 (324)
T ss_pred HHHHHHHHHC--cCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCChHHHHHhccCCCeecCCCcCCccceeeccc
Confidence 9999999998 999 999999999999999999999999995 799999998663 3 4699999999999999974
No 9
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.98 E-value=2.8e-32 Score=238.16 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=146.9
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChHHHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHHH
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVCSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDE 80 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~~ 80 (235)
|+ +||+++++++. +.+++.+| .+.+.|+...+ ..-..++...++ .+ +.+. ....
T Consensus 106 HsesYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K-~~~i~~~~~~~~-~~-~~~v-----a~~~--------------- 161 (324)
T PRK13966 106 HAKSYSQIFSTLCS-TAEIDDAFRWSEENRNLQRK-AEIVLQYYRGDE-PL-KRKV-----ASTL--------------- 161 (324)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHhcCHHHHHH-HHHHHHHhcCCh-HH-HHHH-----HHHH---------------
Confidence 88 99999999985 57888899 88888871111 111123322221 11 1111 1111
Q ss_pred HhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhC---CCc----HHHHHHHHHHHHHHH
Q psy4803 81 AIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVN---KPS----EERIKSIVLDAVLVE 146 (235)
Q Consensus 81 ~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~---~~~----~~~i~~i~~~av~iE 146 (235)
.++..|+++| ++++| +|.+.++++|.|||++|+.+.+.+++.+.. ++. .+++++++.+||++|
T Consensus 162 lEgi~FysgF~~~~~l~~~~km---~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~~~~~~i~~l~~~av~~E 238 (324)
T PRK13966 162 LESFLFYSGFYLPMYWSSRAKL---TNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNE 238 (324)
T ss_pred HhHHHHHHHHHHHHHHhhcCCC---CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence 2788888888 55666 999999999999999999999999986643 222 357899999999999
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCchHHHhhhh--cCCCCccccccchhhcccc
Q psy4803 147 QEFLTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFA----ENPFDFMENISL--EGKTNFFERKVGEYQKSSV 220 (235)
Q Consensus 147 ~~f~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~----~np~~w~~~~~~--~~~~nffe~~~~~Y~~~~~ 220 (235)
++|+.++++ ++|++. .+++||+|+||+||++||++|+|+. .||+ |++.++. .+++||||+|+++|+|++.
T Consensus 239 ~e~~~~~~~--~~Gl~~-~v~~Yi~y~An~~L~~lG~e~~f~~~~~~~nP~-~~~~~~~~~~~~~dFFe~r~t~Y~k~~~ 314 (324)
T PRK13966 239 VEYTQDLYD--EVGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPA-ILSALSPNADENHDFFSGSGSSYVIGKA 314 (324)
T ss_pred HHHHHHHHh--cCCChH-HHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCCh-hHHhhccccccccCCCCCCCcccccccc
Confidence 999999994 789987 5999999999999999999999955 6997 5655554 3799999999999999854
Q ss_pred ccCCCCCceeccCCC
Q psy4803 221 MADQDNQVFRLDEQF 235 (235)
Q Consensus 221 ~~~~~~~~~~~~~~~ 235 (235)
++..||||
T Consensus 315 -------~~~~ddd~ 322 (324)
T PRK13966 315 -------VVTEDDDW 322 (324)
T ss_pred -------ccccccCc
Confidence 45555554
No 10
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.97 E-value=1.6e-31 Score=234.48 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=141.4
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChHHHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHHH
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVCSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDE 80 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~~ 80 (235)
|+ +||++++++++++ ++..+| .+.+.|+...+ ..-..++.... +.+ +.+. ....
T Consensus 117 Hs~sYs~il~tl~~~~-~~~~~f~~~~~~p~l~~K-~~~i~~~~~~~-~~~-~~~v-----a~~~--------------- 172 (335)
T PRK13965 117 HARSYGTIFSTLCSSE-QIEEAHEWVVSTESLQRR-ARVLIPYYTGD-DPL-KSKV-----AAAM--------------- 172 (335)
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHhcCHHHHHH-HHHHHHHHhcC-cHH-HHHH-----HHHH---------------
Confidence 88 9999999999887 557899 88888871111 11112221111 111 1111 0111
Q ss_pred HhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHH
Q psy4803 81 AIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKPS-------EERIKSIVLDAVLVE 146 (235)
Q Consensus 81 ~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~~-------~~~i~~i~~~av~iE 146 (235)
.++..|+++| ++++| ||++.++++|.|||++|+.+++.+++.+..++. .++|++++++||++|
T Consensus 173 lEGi~FysgFa~~~~L~~~gkM---~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~~~~~e~~~~~~~~v~~l~~eav~~E 249 (335)
T PRK13965 173 MPGFLLYGGFYLPFYLSARGKL---PNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLE 249 (335)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999 56777 999999999999999999999988877554332 467899999999999
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCch-HHHhhh--hcCCCCccccccchhhcccc
Q psy4803 147 QEFLTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFAE--NPFD-FMENIS--LEGKTNFFERKVGEYQKSSV 220 (235)
Q Consensus 147 ~~f~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~~--np~~-w~~~~~--~~~~~nffe~~~~~Y~~~~~ 220 (235)
.+|++++++ .+|++.+ +++||+|+||+||++||++|+|++. +|.| |+.+++ +.+++||||+++++|++++.
T Consensus 250 ~~~~~~~~~--~~g~~~~-~~~Yi~y~an~~L~~LG~~~~f~~~~~~~~p~~~~~~~~~~~~~~dFFe~~~t~Y~~~~~ 325 (335)
T PRK13965 250 KAYLRELYA--GFDLAED-AIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSARADENHDFFSGNGSSYVMGIT 325 (335)
T ss_pred HHHHHHHHh--CCCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhCccccccCCCCCCCCCcCeeccc
Confidence 999999997 6898866 9999999999999999999999653 3333 455543 46899999999999999864
No 11
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.96 E-value=3.8e-29 Score=218.42 Aligned_cols=195 Identities=12% Similarity=0.060 Sum_probs=143.3
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChHHH--HHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcH
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVCSL--WFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHEL 78 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~~d--~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l 78 (235)
|+ +||++++++.. |.+++.+| .+.+.|... ++.+ .++...+ . ..+.++ ....
T Consensus 104 Hs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i---~~~~~~~-~-~~~~~v-----~~~~------------- 159 (322)
T PRK13967 104 HAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQII---VDYYRGD-D-ALKRKA-----SSVM------------- 159 (322)
T ss_pred HHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHH---HHHhcCC-c-HHHHHH-----HHHH-------------
Confidence 88 99999999976 56667899 887888711 1111 1221111 1 111111 0111
Q ss_pred HHHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHH-HHHhCCCc-------HHHHHHHHHHHH
Q psy4803 79 DEAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMF-KHLVNKPS-------EERIKSIVLDAV 143 (235)
Q Consensus 79 ~~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~-~~L~~~~~-------~~~i~~i~~~av 143 (235)
.++..|+++| ++++| ||++.++++|.|||++|+.+.+.++ +.+. +.+ .+++.+++.+++
T Consensus 160 --lEgi~FysgF~~~~~l~~~g~m---~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~-~l~~~e~~~~~~~~~~l~~~~~ 233 (322)
T PRK13967 160 --LESFLFYSGFYLPMYWSSRGKL---TNTADLIRLIIRDEAVHGYYIGYKCQRGLA-DLTDAERADHREYTCELLHTLY 233 (322)
T ss_pred --HHHHHHHHHHHHHHHHhhCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHH
Confidence 2777788887 45666 9999999999999999999998644 5553 222 456888999999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCc-hHHH-hhhh--cCCCCccccccchhhcc
Q psy4803 144 LVEQEFLTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFA-ENPF-DFME-NISL--EGKTNFFERKVGEYQKS 218 (235)
Q Consensus 144 ~iE~~f~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~-~np~-~w~~-~~~~--~~~~nffe~~~~~Y~~~ 218 (235)
++|.+|+.+++ +++|++.+ +++||+|+||+||++||++|+|+. ++|. ||+. +++. .+++||||+|+++|+|+
T Consensus 234 ~~E~~~~~~~~--~~~Gl~~~-v~~yi~Y~an~rL~~LGl~~~f~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~ 310 (322)
T PRK13967 234 ANEIDYAHDLY--DELGWTDD-VLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMG 310 (322)
T ss_pred HHHHHHHHHHh--CcCCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhccccCccCCCCCCCCcccccc
Confidence 99999999998 48999866 889999999999999999999965 4665 7773 5553 46999999999999999
Q ss_pred ccccCCCCCceec
Q psy4803 219 SVMADQDNQVFRL 231 (235)
Q Consensus 219 ~~~~~~~~~~~~~ 231 (235)
+. ++.++++|.|
T Consensus 311 ~~-~~~~~~~~~~ 322 (322)
T PRK13967 311 TH-QPTTDTDWDF 322 (322)
T ss_pred Cc-ccCcccCCCC
Confidence 54 4466777765
No 12
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=99.95 E-value=1.6e-27 Score=205.77 Aligned_cols=173 Identities=33% Similarity=0.424 Sum_probs=140.2
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChH--HHHHHHHhhhccCC-CcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCc
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVC--SLWFEARRGELMLG-TDESTFNAILCTRSYPQLAEVFSQYYTLTGHE 77 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~--~d~~~l~~a~~~~g-~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~ 77 (235)
|+ +||++++++++++ +++++| .+.+.|+ .-++.+........ .+...+.+.++ ....+
T Consensus 93 H~e~Ys~il~~l~~~~-e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv-----~~~~l----------- 155 (288)
T cd01049 93 HSESYSYILDTLGKDE-ERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFAERLV-----AFAIL----------- 155 (288)
T ss_pred HHHHHHHHHHHhCCCc-cHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHH-----HHHHH-----------
Confidence 88 9999999999998 888899 8888887 11222222222100 01123444444 23222
Q ss_pred HHHHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCC-------CcHHHHHHHHHHHH
Q psy4803 78 LDEAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNK-------PSEERIKSIVLDAV 143 (235)
Q Consensus 78 l~~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~-------~~~~~i~~i~~~av 143 (235)
++..|+++| ++++| ||++.++++|.|||++|+.+++.+++.+..+ +..++|.+++.+||
T Consensus 156 ----Egi~f~s~F~~~~~l~~~g~m---~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av 228 (288)
T cd01049 156 ----EGIFFYSGFAAIFWLARRGKM---PGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAV 228 (288)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCc---cchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHH
Confidence 788888888 56677 9999999999999999999999999999875 35889999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCCchHHHhh
Q psy4803 144 LVEQEFLTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFA--ENPFDFMENI 199 (235)
Q Consensus 144 ~iE~~f~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~--~np~~w~~~~ 199 (235)
++|.+|++++++.++.|++.+.+++||+|+||+||.+||++++|++ +||+|||+..
T Consensus 229 ~~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~ 286 (288)
T cd01049 229 ELEKEFARDLLPDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELI 286 (288)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999977 8999999854
No 13
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=99.94 E-value=3.3e-27 Score=203.20 Aligned_cols=168 Identities=30% Similarity=0.388 Sum_probs=134.7
Q ss_pred hh-hhHHHHHHHhcCcccccccc-cccCChH--HHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcH
Q psy4803 3 HT-VDSLLIDTYIKDQEERMTAP-GITRSVC--SLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHEL 78 (235)
Q Consensus 3 h~-~ys~~~~~~~~~~~~~~~i~-~~~~~~~--~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l 78 (235)
|. +||++++++.+|+.++..++ .+.+.|. .-.+.+.+... .+.. +.+.++ ....
T Consensus 101 H~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~---~~~~-~~~~lv-----~~~~------------- 158 (281)
T PF00268_consen 101 HAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYE---DNDS-LAEKLV-----ASVI------------- 158 (281)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHC---SSSH-HHHHHH-----HHHH-------------
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhch---hhhh-HHHHHH-----HHHH-------------
Confidence 88 99999999999999888898 7777766 11222222222 2222 333322 1111
Q ss_pred HHHhhccchhhH-------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHH
Q psy4803 79 DEAIGREFSGDI-------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVN--KPSEERIKSIVLDAVLVEQEF 149 (235)
Q Consensus 79 ~~~i~~~~sg~f-------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~--~~~~~~i~~i~~~av~iE~~f 149 (235)
.++..|+++| ++++| ||+..++++|.|||++|+.+++.+++.|+. ++..+.|.+++++||++|.+|
T Consensus 159 --lEgi~f~s~F~~~~~l~~~g~m---~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~i~~l~~eav~~E~~~ 233 (281)
T PF00268_consen 159 --LEGILFYSGFAYILYLARQGKM---PGLAEIIKLIMRDESLHVEFGIYLFRTLVEENKPEEEEIYELFDEAVELEIEF 233 (281)
T ss_dssp --HHHTTTHHHHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHcCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 2888899999 44566 999999999999999999999999999995 456788999999999999999
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHH
Q psy4803 150 LTEALPVKLIGMNCDLMKQYIEYVADRLLVDLGCSKHYFAENPFDFME 197 (235)
Q Consensus 150 ~~~~~~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~y~~~np~~w~~ 197 (235)
+++.++.++.|++++.+++||+|+||+||.+||++|+|++.||++||+
T Consensus 234 ~~~~~~~~~~gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~~~~~ 281 (281)
T PF00268_consen 234 IDDILPGDIIGLNKEDIKQYIKYNANRRLRNLGFEPIYNVENPFPWME 281 (281)
T ss_dssp HHTTSTGGGTTBSHHHHHHHHHHHHHHHHHHTTS--SSTTCCSSTTHC
T ss_pred HHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Confidence 999988779999999999999999999999999999999999999984
No 14
>KOG0819|consensus
Probab=99.70 E-value=4.9e-17 Score=138.47 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=115.9
Q ss_pred ccc-cccCChH-HHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHHHHhhccchhhHHHHHHhhcc
Q psy4803 22 TAP-GITRSVC-SLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISP 99 (235)
Q Consensus 22 ~i~-~~~~~~~-~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~~~i~~~~sg~f~~~ll~l~~ 99 (235)
+++ +|..+|. +||++|+++++++||++++++||||+||+.|++++.++|+..|+++|+++|.+++||+|++.|+.|+.
T Consensus 80 ~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~ 159 (321)
T KOG0819|consen 80 RAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQ 159 (321)
T ss_pred HHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHh
Confidence 466 8999988 99999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred cccc-------------cc-------------------------------------------------------------
Q psy4803 100 LTNY-------------KP------------------------------------------------------------- 105 (235)
Q Consensus 100 ~~~~-------------a~------------------------------------------------------------- 105 (235)
+..+ |.
T Consensus 160 ~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~ll 239 (321)
T KOG0819|consen 160 GNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLL 239 (321)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHH
Confidence 4322 00
Q ss_pred chhhhcccchhhHHHHHHHHHhCCCcHHHH-HHHH-----HHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHH
Q psy4803 106 GFGLIMCGLHCEFACLMFKHLVNKPSEERI-KSIV-----LDAVLVEQEFLTEALPVK----LIGMNCDLMKQYI 170 (235)
Q Consensus 106 ~li~~de~~ht~~~~ll~~~L~~~~~~~~i-~~i~-----~~av~iE~~f~~~~~~~~----~~gl~~~~~~~yi 170 (235)
.++.+..+...+|+..|+.+|++.++.++. +||+ .|+..|+.+|.+ .++.. |-|-++...+..+
T Consensus 240 aiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~-~Y~ksL~~~I~~dtsGdY~~~L 313 (321)
T KOG0819|consen 240 AIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQR-KYGKSLYSAIKGDTSGDYKKAL 313 (321)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHH-HhCccHHHHHhhhccchHHHHH
Confidence 155556667778888888888877765554 6665 388888888876 34321 4444444444443
No 15
>KOG0819|consensus
Probab=99.69 E-value=7.8e-17 Score=137.23 Aligned_cols=105 Identities=25% Similarity=0.331 Sum_probs=94.7
Q ss_pred hHHHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHHHHhhccchhhHHHHHHhh--ccccccccch
Q psy4803 30 VCSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI--SPLTNYKPGF 107 (235)
Q Consensus 30 ~~~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~~~i~~~~sg~f~~~ll~l--~~~~~~a~~l 107 (235)
|..|++.|++|++|+|+||..+|+||++||+.|++.|..+|+..||++|.+++++++||+|++++++| .|+.++|..+
T Consensus 18 p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l 97 (321)
T KOG0819|consen 18 PVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPPAEYDAKEL 97 (321)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHHHHH
Confidence 44899999999999999999999999999999999999999999999999999999999999999999 5888999999
Q ss_pred hhhcccchhhHHHHHHHHHhCCCcHHHHH
Q psy4803 108 GLIMCGLHCEFACLMFKHLVNKPSEERIK 136 (235)
Q Consensus 108 i~~de~~ht~~~~ll~~~L~~~~~~~~i~ 136 (235)
..+++|.|++..+++ .+++.+ +..++.
T Consensus 98 ~~amkg~gtde~vlI-EIlcTR-T~~el~ 124 (321)
T KOG0819|consen 98 KKAMKGLGTDEKVLI-EILCTR-TNEELR 124 (321)
T ss_pred HHHHhccCcchhhhe-eeeccC-CHHHHH
Confidence 999999999998754 666654 344443
No 16
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=99.67 E-value=5.5e-16 Score=135.13 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=88.7
Q ss_pred hhccchhhHH--------HHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHH
Q psy4803 82 IGREFSGDIK--------EGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKPS------EERIKSIVLDAVLVEQ 147 (235)
Q Consensus 82 i~~~~sg~f~--------~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~~------~~~i~~i~~~av~iE~ 147 (235)
+|..|+++|. +++| ||++.++++|.|||+.|+.|++.+++.++.+.+ .+.+.+++..||++ .
T Consensus 174 EGi~f~sgF~~~~~~l~~~~~m---pgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~-~ 249 (311)
T PRK08326 174 EGVLAETGYYAWRKICVTRGIL---PGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGL-I 249 (311)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH-H
Confidence 7888888773 3555 999999999999999999999999999986433 36778899999996 7
Q ss_pred HHHHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy4803 148 EFLTEALPVKLI-GMNCDLMKQYIEYVADRLLVDLGCSKH 186 (235)
Q Consensus 148 ~f~~~~~~~~~~-gl~~~~~~~yi~~~an~~l~~lG~~~~ 186 (235)
+|+.++++.+++ |+|.+.+++||+|+||+||+.||+..-
T Consensus 250 ~~~~~~~~~~i~~Gl~~~~~~~Yi~y~an~RL~~iG~~~~ 289 (311)
T PRK08326 250 DEIFALYGDQIPFELSNDEFVDYAADRGQRRLGAIERARG 289 (311)
T ss_pred HHHHHhccCcccCCCCHHHHHHHHHHHHHHHHHHhCcccc
Confidence 899999988887 999999999999999999999999874
No 17
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=99.67 E-value=7.5e-16 Score=132.63 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=85.5
Q ss_pred hhccchhhH--------HHHHHhhccccccccchhhhcccchhhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHH
Q psy4803 82 IGREFSGDI--------KEGLIAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVNKP--SEERIKSIVLDAVLVEQEFLT 151 (235)
Q Consensus 82 i~~~~sg~f--------~~~ll~l~~~~~~a~~li~~de~~ht~~~~ll~~~L~~~~--~~~~i~~i~~~av~iE~~f~~ 151 (235)
++..|+++| ++++| ||...++++|.|||+.|+.+++.+++.+..+. ..+.+.+.+.++++.|.++.+
T Consensus 155 EGilf~sgF~~~~~~l~~~g~m---~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~e~~~~l~~~av~~~~ 231 (280)
T cd07911 155 EGVLAETGYYAWRTICEKRGIL---PGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWDVFEERMNELVPHALGLID 231 (280)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 777888877 33556 99999999999999999999999999998643 234567777778888887777
Q ss_pred hhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy4803 152 EAL---PVKLIGMNCDLMKQYIEYVADRLLVDLGCSKH 186 (235)
Q Consensus 152 ~~~---~~~~~gl~~~~~~~yi~~~an~~l~~lG~~~~ 186 (235)
+++ +.++.|++.+.+.+|++|+||+||..||++|-
T Consensus 232 ~~~~~~~~~~~g~~~~~~~~Y~~~~a~~rL~~lg~~~~ 269 (280)
T cd07911 232 EIFELYDEMPFGLDPDELMQYAVDQFQRRLGYIERARG 269 (280)
T ss_pred HHHHhCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 764 44599999999999999999999999999984
No 18
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.63 E-value=1e-15 Score=103.35 Aligned_cols=66 Identities=35% Similarity=0.387 Sum_probs=62.7
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHHHHhhccchhhHHHHHHhh
Q psy4803 32 SLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97 (235)
Q Consensus 32 ~d~~~l~~a~~~~g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~~~i~~~~sg~f~~~ll~l 97 (235)
+||+.|+++++++|+|+..+++||++||+.|++.|+++|++.||++|.++++.+++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999999999999999864
No 19
>smart00335 ANX Annexin repeats.
Probab=99.27 E-value=1.3e-11 Score=79.50 Aligned_cols=53 Identities=40% Similarity=0.570 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHhhCCcHHHHhhccchhhHHHHHHhh
Q psy4803 45 GTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97 (235)
Q Consensus 45 g~de~~~~~iL~~rs~~~l~~i~~~y~~~~g~~l~~~i~~~~sg~f~~~ll~l 97 (235)
|+|+..+++|+++||+.|+++|..+|+.+||++|.++++.+++|+|+++++++
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999998853
No 20
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=77.41 E-value=1.2 Score=24.92 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=17.6
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHH
Q psy4803 147 QEFLTEALPVKLIGMNCDLMKQYIEYV 173 (235)
Q Consensus 147 ~~f~~~~~~~~~~gl~~~~~~~yi~~~ 173 (235)
.+|..-+....-.|++.+++++|+++.
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 456654444347899999999999863
No 21
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=71.92 E-value=6.4 Score=28.57 Aligned_cols=60 Identities=25% Similarity=0.516 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHH-------------HHHHHcCCCCCC---CCCCCc--hHHHhhh-hcCCCCccccccchhhc
Q psy4803 157 KLIGMNCDLMKQYIEYVAD-------------RLLVDLGCSKHY---FAENPF--DFMENIS-LEGKTNFFERKVGEYQK 217 (235)
Q Consensus 157 ~~~gl~~~~~~~yi~~~an-------------~~l~~lG~~~~y---~~~np~--~w~~~~~-~~~~~nffe~~~~~Y~~ 217 (235)
||+|+. ++.+.|+.|..+ +||+.+|..+.| --.|-+ ||=..+. .-.+.+||--++.+|..
T Consensus 4 giiglk-kmidSYnDy~~~ev~vkHknRVyThKRLedmgfsK~fmrFiLaNafiPpyrkyihKiiLNEryFtFkf~ayLl 82 (131)
T PF06556_consen 4 GIIGLK-KMIDSYNDYCLSEVGVKHKNRVYTHKRLEDMGFSKCFMRFILANAFIPPYRKYIHKIILNERYFTFKFNAYLL 82 (131)
T ss_pred ceeeHH-HHHHHHHHHHhhhhceeecceeeehhhHHHcCCCcceEEEEeecccCCcHHHHHHHHhhccceEEEehhhhhh
Confidence 466643 566666666543 699999999977 113332 4655433 33567788888888863
No 22
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=45.76 E-value=82 Score=20.40 Aligned_cols=51 Identities=12% Similarity=0.261 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCC
Q psy4803 133 ERIKSIVLDAVLVEQEFLTEALPVKLI-GMNCDLMKQYIEYVADRLLVDLGCS 184 (235)
Q Consensus 133 ~~i~~i~~~av~iE~~f~~~~~~~~~~-gl~~~~~~~yi~~~an~~l~~lG~~ 184 (235)
.++..+...++++.+++++.....|.+ -=-++.++..|+-..+.+-.+ |+-
T Consensus 7 ~el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~qn-Gf~ 58 (59)
T PF10925_consen 7 KELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQN-GFV 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 456778889999999999999988854 222456777777666665544 543
No 23
>PRK13456 DNA protection protein DPS; Provisional
Probab=39.98 E-value=1.2e+02 Score=24.57 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHHHHHH-HHHHhhcCC-CCCCCCHHHHHHHHHHHH----------HHHHHHcCCCCCCCCCCCchHHH
Q psy4803 130 PSEERIKSIVLDAVLVEQ-EFLTEALPV-KLIGMNCDLMKQYIEYVA----------DRLLVDLGCSKHYFAENPFDFME 197 (235)
Q Consensus 130 ~~~~~i~~i~~~av~iE~-~f~~~~~~~-~~~gl~~~~~~~yi~~~a----------n~~l~~lG~~~~y~~~np~~w~~ 197 (235)
.+.+++++++.+|+.-|. .|..|.... -+.|+..+.++.+++--+ -.|+.+||=.|++ +|-+|+.
T Consensus 16 ~d~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~---~p~~~~~ 92 (186)
T PRK13456 16 VDVDKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPR---DIREFHD 92 (186)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChHHHhh
Confidence 467888888888877775 344444432 277888888888876544 2356678777765 4445554
No 24
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=36.85 E-value=2.1e+02 Score=23.80 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=26.0
Q ss_pred hhHHHHHHHhcCcccccccc-cccCC----hH---HHHHHHHhhhccCCCcHHHHHHHHhC
Q psy4803 5 VDSLLIDTYIKDQEERMTAP-GITRS----VC---SLWFEARRGELMLGTDESTFNAILCT 57 (235)
Q Consensus 5 ~ys~~~~~~~~~~~~~~~i~-~~~~~----~~---~d~~~l~~a~~~~g~de~~~~~iL~~ 57 (235)
+|-.+++.| +.++++..|| ++... |. .|++.+.+..++. ....+...|+.
T Consensus 54 ~fd~fm~GY-~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~--s~~~l~~~l~~ 111 (216)
T PF11264_consen 54 VFDRFMQGY-PPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGK--SIEDLLSWLSQ 111 (216)
T ss_pred HHHHHhcCC-CChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHhc
Confidence 444555555 4555666676 65543 22 5566555555543 33445555544
No 25
>PHA03154 hypothetical protein; Provisional
Probab=33.04 E-value=1.4e+02 Score=25.77 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH-HHHHhhcCCCCCCCCHHHHHHHHHHHHHHH
Q psy4803 137 SIVLDAVLVEQ-EFLTEALPVKLIGMNCDLMKQYIEYVADRL 177 (235)
Q Consensus 137 ~i~~~av~iE~-~f~~~~~~~~~~gl~~~~~~~yi~~~an~~ 177 (235)
..+.++..+|. .|..+.++ ..|-..+.|-.||+|+||.+
T Consensus 236 ~~~~~LLk~EvkaF~~W~~s--q~~y~~~~m~k~i~~~~~~~ 275 (304)
T PHA03154 236 GFTEALLKQEVSAFYEWCLE--QEDYEADRMAKFIKFSADQI 275 (304)
T ss_pred HHHHHHHHHHHHHHHHhhcC--cCcccHHHHHHHHHHHHhhh
Confidence 33367777876 57777775 45558999999999999985
No 26
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=30.12 E-value=60 Score=28.41 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH
Q psy4803 131 SEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADR 176 (235)
Q Consensus 131 ~~~~i~~i~~~av~iE~~f~~~~~~~~~~gl~~~~~~~yi~~~an~ 176 (235)
+++....++....++...+..-.+ ..|+|-+.|.|..||+|+++.
T Consensus 50 Dk~~Ae~Lin~q~elsd~tGnp~~-~qI~~~t~EA~~kYidfv~~i 94 (314)
T TIGR01114 50 DKAAAETLIKTQEELSDATGNPYV-VQIFGETPEAIVRYIDWVADI 94 (314)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeE-EEEecCCHHHHHHHHHHHhcc
Confidence 466777888887777766655433 359999999999999999983
No 27
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=26.38 E-value=2.7e+02 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=10.0
Q ss_pred hHHHHHHHhcCcccccccc-cccC
Q psy4803 6 DSLLIDTYIKDQEERMTAP-GITR 28 (235)
Q Consensus 6 ys~~~~~~~~~~~~~~~i~-~~~~ 28 (235)
|-.+++.| +.++++..|| ++..
T Consensus 58 fd~fm~GY-~Pee~~~~IF~Alc~ 80 (206)
T PLN03060 58 YDQLMDGY-PNATDRDAIFKAYIE 80 (206)
T ss_pred HHHHHcCC-CChHHHHHHHHHHHH
Confidence 33344444 3344455555 5443
No 28
>PRK14047 putative methyltransferase; Provisional
Probab=26.31 E-value=74 Score=27.80 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH
Q psy4803 131 SEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADR 176 (235)
Q Consensus 131 ~~~~i~~i~~~av~iE~~f~~~~~~~~~~gl~~~~~~~yi~~~an~ 176 (235)
+++.+..++....++...+..-.+ ..|+|-+.+.|..||.|+++.
T Consensus 50 Dk~~Ae~Lin~q~elsd~TGnp~~-~~I~g~t~EA~~kYidfv~ei 94 (310)
T PRK14047 50 DREAAEKLVNLQEEMSDETGNPCV-VHIFGTTPEAITNYIDFFSEV 94 (310)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeE-EEEecCCHHHHHHHHHHHhhc
Confidence 466677788777777766655433 359999999999999999985
No 29
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=22.22 E-value=1.1e+02 Score=26.57 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHH
Q psy4803 131 SEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVAD 175 (235)
Q Consensus 131 ~~~~i~~i~~~av~iE~~f~~~~~~~~~~gl~~~~~~~yi~~~an 175 (235)
+++.+.+++....++-.+...-.+ ..|+|-+.+.|..||+|++.
T Consensus 45 Dk~~Ae~Li~~q~elsd~TGnp~~-~~I~~~s~EA~~kYidFv~~ 88 (296)
T PF02007_consen 45 DKEAAEALINRQEELSDETGNPCI-VDIVAESPEAMEKYIDFVAE 88 (296)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeE-EEEecCCHHHHHHHHHHHhh
Confidence 466677777776666655554333 35889999999999999987
Done!