RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4803
(235 letters)
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
PY03671, S genomics consortium, SGC, oxidoreductase;
2.70A {Plasmodium yoelii yoelii}
Length = 349
Score = 205 bits (523), Expect = 2e-65
Identities = 86/237 (36%), Positives = 121/237 (51%), Gaps = 33/237 (13%)
Query: 7 SLLIDTYIKDQEERMTAPGITRSVCSLWFEARRGELMLGTDESTFNAIL--CTRSYPQLA 64
SLLID YIKD++ER+ ++ ++ +A + S I+ +
Sbjct: 138 SLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFS 197
Query: 65 EVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTNYKPGFGLIMC------GLHCEF 118
F + N G GLH +F
Sbjct: 198 GSFCAIFWFKKQ-------------------------NKLHGLTFSNELISRDEGLHTDF 232
Query: 119 ACLMFKHLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADRLL 178
CL++ L NK E +++IV +AV VE+ F+ E+LP LIGMN LM QYIE+VADRLL
Sbjct: 233 NCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLL 292
Query: 179 VDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 235
LGCSK + ++NPF++M+ ISL+GKTNFFE++V +YQKS VMA + QVF L+ F
Sbjct: 293 ECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRKEQVFSLNTDF 349
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
ribonucleotide reductase, dinuclear metal-cluster; 2.2A
{Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A
1xsm_A 2uw2_A 3hf1_A 2vux_A
Length = 390
Score = 204 bits (521), Expect = 1e-64
Identities = 108/238 (45%), Positives = 141/238 (59%), Gaps = 34/238 (14%)
Query: 7 SLLIDTYIKDQEERMTAPGITRSVCSLWFEARRGELMLGTDESTFNAIL---CTRSYPQL 63
SLLIDTYIKD +ER ++ + +A +G E+T+ +
Sbjct: 178 SLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 237
Query: 64 AEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTNYKPGFGLIMC------GLHCE 117
+ F+ + L K GL+ PG GLHC+
Sbjct: 238 SGSFASIFWLK----------------KRGLM---------PGLTFSNELISRDEGLHCD 272
Query: 118 FACLMFKHLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADRL 177
FACLMFKHLV+KP+E+R++ I+ +AV +EQEFLTEALPVKLIGMNC LMKQYIE+VADRL
Sbjct: 273 FACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRL 332
Query: 178 LVDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 235
+++LG +K + ENPFDFMENISLEGKTNFFE++VGEYQ+ VM++ F LD F
Sbjct: 333 MLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSNSTENSFTLDADF 390
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 204 bits (520), Expect = 3e-64
Identities = 95/246 (38%), Positives = 120/246 (48%), Gaps = 47/246 (19%)
Query: 7 SLLIDTYIKDQEERMTAPGITRSVCSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEV 66
SLLIDTYIKD +E E FNAI + P++ E
Sbjct: 204 SLLIDTYIKDPKES---------------------------EFLFNAI---HTIPEIGEK 233
Query: 67 FSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLT--------NYKPGFGLIMC------ 112
R + EG+ PG
Sbjct: 234 AEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDE 293
Query: 113 GLHCEFACLMFKHLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEY 172
GLH +FACL+F HL NKP ++ IV +AV +EQ + +ALPV L+GMN DLM QY+E+
Sbjct: 294 GLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEF 353
Query: 173 VADRLLVDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMA---DQDNQVF 229
VADRLLV G K+Y ENPFDFMENISL GKTNFFE++V +YQK+ VM+ Q+ F
Sbjct: 354 VADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVSDYQKAGVMSKSTKQEAGAF 413
Query: 230 RLDEQF 235
+E F
Sbjct: 414 TFNEDF 419
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Length = 345
Score = 191 bits (488), Expect = 3e-60
Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 37/240 (15%)
Query: 7 SLLIDTYIKDQEERMTAPGITRSVCSLWFEARRGELMLGTDESTFNAIL---CTRSYPQL 63
S+++D + KD + I ++ + +A E + D+S + L +
Sbjct: 132 SMMVDAFFKDPKNIPLFKEI-ANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQ 190
Query: 64 AEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTNYKPGFGLIMC------GLHCE 117
A ++ + LT + ++ PG + G + +
Sbjct: 191 AGNYASMFWLT----------------DKKIM---------PGLAMANRNICRDRGAYTD 225
Query: 118 FACLMFKHLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADRL 177
F+CL+F HL KP+ + I+ I+ +AV +E+E+ + +LPV+ GM+ + YIE+VAD L
Sbjct: 226 FSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGL 285
Query: 178 LVDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMAD--QDNQVFRLDEQF 235
L G K+Y A NPF+FME+++ GKT FFE+KV +YQK+S M+ ++ D+ F
Sbjct: 286 LQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSDYQKASDMSKSATPSKEINFDDDF 345
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
activation, iron coupled radical, immune EVAS
replication, oxidoreductase; 1.70A {Chlamydia
trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Length = 346
Score = 176 bits (449), Expect = 3e-54
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 113 GLHCEFACLMFKHLVNKPSE-------ERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDL 165
+H F + + + E + I ++ AV +E E+ + LP ++G+ +
Sbjct: 228 TIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASM 287
Query: 166 MKQYIEYVADRLLVDLGCSKHYFAENPFDFM-ENISLEGKTNFFERKVGEYQKSSVM 221
Y++++ADR L +G Y +NPF +M E I L + NFFE +V EYQ ++ +
Sbjct: 288 FIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASL 344
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase,
epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus
4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Length = 324
Score = 168 bits (429), Expect = 1e-51
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 113 GLHCEFACLMFKHLVNK---PSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQY 169
LH A L++ + K P I+ + AV VE F+ EA + ++ +KQ+
Sbjct: 211 LLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVETAFI-EARGEGVTLVDVRAIKQF 269
Query: 170 IEYVADRLLVDLGCSKHYFAENPFDF-MENISLEGKTNFFERKVGEYQKSSV 220
+E ADR+L D+G + Y P D + ++ +TNFFE++ +Y V
Sbjct: 270 LEATADRILGDIGQAPLYGTPPPKDCPLTYMTSIKQTNFFEQESSDYTMLVV 321
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide
reductase, oxidoreductase, DNA replication, iron,
DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Length = 311
Score = 150 bits (380), Expect = 2e-44
Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 37/201 (18%)
Query: 7 SLLIDTYIKDQEERMTAPGITRSVCSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEV 66
SLLID YIKD++ERM F+AI + A
Sbjct: 137 SLLIDNYIKDEKERMNL---------------------------FHAIENIPAVKNKALW 169
Query: 67 FSQYYTLTGHELDEAIGREFSGDIKEGLIAISPL----TNYKPGFGLIMC------GLHC 116
+++ T + + I + N G GLH
Sbjct: 170 AAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHT 229
Query: 117 EFACLMFKHLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADR 176
+F CL++ L NK EE +++IV +AV VE+ F+ E+LP LIGMN LM QYIE+VADR
Sbjct: 230 DFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADR 289
Query: 177 LLVDLGCSKHYFAENPFDFME 197
LL LG K + A+NPF++M+
Sbjct: 290 LLECLGSPKIFHAKNPFNWMD 310
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding,
HRRM2, oxidoreductase; 2.10A {Homo sapiens}
Length = 286
Score = 145 bits (368), Expect = 5e-43
Identities = 86/196 (43%), Positives = 112/196 (57%), Gaps = 28/196 (14%)
Query: 7 SLLIDTYIKDQEERMTAPGITRSVCSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEV 66
SLLIDTYIKD +ER ++ + +A +G E+T+ E
Sbjct: 113 SLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATY------------GER 160
Query: 67 FSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTNYKPGFGLIMC------GLHCEFAC 120
+ + G + F +K+ PG GLHC+FAC
Sbjct: 161 VVAFAAVEGIFFSGSFASIFW--LKKR--------GLMPGLTFSNELISRDEGLHCDFAC 210
Query: 121 LMFKHLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQYIEYVADRLLVD 180
LMFKHLV+KPSEER++ I+++AV +EQEFLTEALPVKLIGMNC LMKQYIE+VADRL+++
Sbjct: 211 LMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLE 270
Query: 181 LGCSKHYFAENPFDFM 196
LG SK + ENPFDFM
Sbjct: 271 LGFSKVFRVENPFDFM 286
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide
reductase, manganese, oxidoreductase; 1.90A {Bacillus
subtilis}
Length = 350
Score = 143 bits (362), Expect = 2e-41
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 113 GLHCEFACLMFKHLVNKPSEERIKSIVLDAV-----LVEQEFLTEALPVKLIGMNCDLMK 167
+H + L+ + + NK +EE+ + A+ L E E +G++ D +K
Sbjct: 220 AIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQVGLSHD-VK 278
Query: 168 QYIEYVADRLLVDLGCSKHYFAE--NPFDFMENISLEGKTNFFERKVGEYQKSSVMADQD 225
++I Y A++ L++LG ++ E NP + +FF K Y+K++V +D
Sbjct: 279 KFIRYNANKALMNLGFDPYFEEEDINPIVLNGLNTKTKSHDFFSMKGNGYKKATVEPLKD 338
Query: 226 NQVFRLDE 233
+ + DE
Sbjct: 339 DDFYFEDE 346
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 117 bits (295), Expect = 2e-31
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 113 GLHCEFACLMFKHLVN-----------KPSEERIKSIVLDAVLVEQEFLTEALP-VKLIG 160
LH M L + + ++ + + A E+++ +IG
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIG 298
Query: 161 MNCDLMKQYIEYVADRLLVDLGCSKHY-FAENPFDFMENI--SLEGKTNFFERKVGEYQK 217
+N D++ QY+EY+ + + +G + NP ++ S + E +V Y
Sbjct: 299 LNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLV 358
Query: 218 SSVMADQDNQVF 229
+ ++ D
Sbjct: 359 GQIDSEVDTDDL 370
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
reductase, four-helix bundle, dimanganese CLU
oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Length = 319
Score = 114 bits (287), Expect = 1e-30
Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 113 GLHCEFACLMFKHLVNKPSEER-------IKSIVLDAVLVEQEFLTEALPVKLIGMNCDL 165
+H + ++ + K S + ++L+ E ++ E D
Sbjct: 193 AVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAE---TPWADD 249
Query: 166 MKQYIEYVADRLLVDLGCSKHYFAE----NPFDFM-ENISLEGKTNFFERKVGEYQKSSV 220
+K ++ Y A++ L++LG + AE NP + + + +FF Y
Sbjct: 250 VKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMGKA 309
Query: 221 MADQD 225
+ +D
Sbjct: 310 VETED 314
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
putative class I ribonucleotide reductase,
ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
{Bacillus halodurans c-125}
Length = 346
Score = 113 bits (285), Expect = 4e-30
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 113 GLHCEFACLMFK-------HLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDL 165
LH +FK L + ++ +K+ ++ A +E+++ + K+ G+N +
Sbjct: 221 QLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPED 280
Query: 166 MKQYIEYVADRLLVDLGCSKHY--FAENPFDFMENIS--LEGKTNFFERKVGEYQKSSVM 221
M+ YI ++A++ V LG K Y NP ++ GK++FFE+K +Y K S
Sbjct: 281 METYISFIANKRAVQLGMEKPYPEIKHNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSAD 340
Query: 222 ADQD 225
D
Sbjct: 341 NGFD 344
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond,
metal binding protein; 1.63A {Corynebacterium
ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A
1kgn_A
Length = 329
Score = 107 bits (268), Expect = 8e-28
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 113 GLHCEFACLMFKHLVNKPSEER-------IKSIVLDAVLVEQEFLTEALPVKLIGMNCDL 165
+H + ++ V K SE ++ D E E+ + +G D
Sbjct: 203 SVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYD--DLGWTED- 259
Query: 166 MKQYIEYVADRLLVDLGCSKHYFAE----NPFDFM-ENISLEGKTNFFERKVGEYQKSSV 220
+K+++ Y A++ L +LG + + +P + + + +FF Y
Sbjct: 260 VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKA 319
Query: 221 MADQD 225
D
Sbjct: 320 EDTTD 324
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
DIIRON, carboxylate, oxidase, ligand, C monooxygenase;
HET: MYR; 1.90A {Mycobacterium tuberculosis}
Length = 323
Score = 86.3 bits (214), Expect = 3e-20
Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 51/235 (21%)
Query: 7 SLLIDTYIKDQEERM---TAPGITRSVCSLWFEARRGELM--LGTDESTFNAILCTRSYP 61
+ +D ++ P + F A E + L D S + + +Y
Sbjct: 118 RMWLDAVGISEDLHRYLDDLPAYRQ-----IFYAELPECLNALSADPSPAAQVRASVTYN 172
Query: 62 QLAE------VFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTNYKPGFGLIMC--G 113
+ E + ++ + + + L + I
Sbjct: 173 HIVEGMLALTGYYAWHKI---------CV------ERAI-----LPGMQELVRRIGDDER 212
Query: 114 LHCEFACLMFKHLVN------KPSEERIKSIVLDAVLVEQEFLTEALPVKLIGMNCDLMK 167
H + + V E R+ ++ A+ + +E ++ D
Sbjct: 213 RHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKD--- 269
Query: 168 QYIEYVADRLLVDLGCSKHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMA 222
+++Y D+ + G A + I ++ E + + ++ A
Sbjct: 270 DFLQYSTDKGMRRFG--TISNARGR--PVAEIDVDYSPAQLEDTFADEDRRTLAA 320
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 74.1 bits (182), Expect = 6e-16
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 10/95 (10%)
Query: 45 GTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTNYK 104
+ + T + + + G +++AI ++
Sbjct: 168 QKNTAYLIDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIATIYTKTDYYTFYCAHFALLGM 227
Query: 105 PGFGLIMCGLHCEFACLMFKHLVNKPSEERIKSIV 139
A L+ +K E+R++ I
Sbjct: 228 HRL----------AAYLINCACNDKGDEKRMRRIT 252
Score = 51.0 bits (122), Expect = 8e-08
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 43 MLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIA 96
+ DE I S ++ Y G EL + I + G +E L+
Sbjct: 15 IDAKDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKGGSEESLLM 68
Score = 44.0 bits (104), Expect = 2e-05
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 4/68 (5%)
Query: 31 CSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDI 90
+A G D F + + E + Y + L E ++
Sbjct: 79 AQHIRDALSG----RNDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVEDFMKDVGRKE 134
Query: 91 KEGLIAIS 98
L+
Sbjct: 135 DWCLLMEK 142
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 72.0 bits (176), Expect = 8e-15
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+ E+ F ILCTRSYP L VF ++ +T ++++ I +E SGD+++ +AI
Sbjct: 535 PSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGDVRDAFVAI 592
Score = 68.9 bits (168), Expect = 9e-14
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISP 99
GEL GTDE+ F IL RS L VF +Y TG ++ +I E SGD ++ ++A+
Sbjct: 187 GELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLMLAVVK 246
Query: 100 LTNYKPGF 107
P +
Sbjct: 247 CIRSTPEY 254
Score = 50.8 bits (121), Expect = 1e-07
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
G+D+ I+ +RS Q EV Y +L G +L + E +G + ++ +
Sbjct: 35 FGSDKEAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLKYELTGKFERLIVGL 88
Score = 49.6 bits (118), Expect = 3e-07
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 46 TDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
TD+ T I+ +RS L + ++ L +AI + SGD + L+A+
Sbjct: 616 TDDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGDFLKALLAL 667
Score = 49.3 bits (117), Expect = 4e-07
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
LGTDE T I+ RS Q ++ + + G +L + E SGD+ ++ +
Sbjct: 378 LGTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGL 431
Score = 45.8 bits (108), Expect = 5e-06
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
LGT ++T I+ +RS + ++ + T L I + SG+ K+ L+ +
Sbjct: 266 LGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKKTLLKL 319
Score = 44.6 bits (105), Expect = 1e-05
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 36 EARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLI 95
E + +GTDE IL +R+ Q+ ++ + Y +L+ I + SG ++ L+
Sbjct: 99 EIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYERDLEADIIGDTSGHFQKMLV 158
Query: 96 AI 97
+
Sbjct: 159 VL 160
Score = 42.7 bits (100), Expect = 6e-05
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 43 MLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GTDE IL TR+ ++ + Y L++A+ + SG + LI++
Sbjct: 449 GAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDALSSDTSGHFRRILISL 503
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 71.0 bits (174), Expect = 8e-15
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSG-DIKEGLIAIS 98
D ++ T + + E+ ++ LTG + EAI ++ + GL
Sbjct: 167 LIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAH 226
Query: 99 PLTNYKPGF 107
Sbjct: 227 YYNLAPARA 235
Score = 44.1 bits (104), Expect = 1e-05
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 41 ELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREF-SGDIKEGLIA 96
++ +E S + E+ +Q+ TG E + + +G ++ +
Sbjct: 15 AILEAKNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMAL 71
Score = 38.7 bits (90), Expect = 8e-04
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 45 GTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGD 89
D + ++ + + ++ Y TG++L + +
Sbjct: 91 VNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLT 135
Score = 34.8 bits (80), Expect = 0.017
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLT 101
D + A T + L + +Y G D+ + R S + + + L
Sbjct: 247 QNDDMAYEQAARITGLFHDLHKFAWVHYACWGVMRDDILSRFQSKEANKVNFRDACLM 304
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Length = 327
Score = 70.0 bits (171), Expect = 3e-14
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISP 99
GE + GTDE F ILCTRS L VF +Y + ++++I E G ++E ++ +
Sbjct: 190 GEKIRGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSETHGSLEEAMLTVVK 249
Query: 100 LTNYKPGF 107
T +
Sbjct: 250 CTQNLHSY 257
Score = 51.5 bits (123), Expect = 6e-08
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GT + T + +RS L + + + G L I + SGD K L+++
Sbjct: 269 AGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSMIMEDTSGDYKNALLSL 322
Score = 48.8 bits (116), Expect = 5e-07
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIA 96
+GT+E +L RS Q ++ + G +L E + E SG + ++A
Sbjct: 37 IGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVA 89
Score = 45.7 bits (108), Expect = 4e-06
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 36 EARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLI 95
E LGT E IL +R+ QL E+ Y G L+E I + SG ++ L+
Sbjct: 101 ELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGYLERILV 160
Query: 96 AI 97
+
Sbjct: 161 CL 162
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 68.8 bits (168), Expect = 5e-14
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GE +GTDES FNA+L TRSYPQL ++F +Y ++ + +AI EFSGDIK GL+AI
Sbjct: 180 GEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIENEFSGDIKNGLLAI 237
Score = 52.6 bits (126), Expect = 2e-08
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
LGT + T IL +RS LA + + + G L E I + SGD K+ L+ I
Sbjct: 259 LGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEFIADDCSGDYKDLLLQI 312
Score = 46.9 bits (111), Expect = 2e-06
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+GTDE + IL TRS Q ++ + Y TL G L++ + E SG+ + +A+
Sbjct: 28 IGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALAL 81
Score = 43.8 bits (103), Expect = 2e-05
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 43 MLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
LGTD++ ILCT+S Q+ + + + L +L++ I E SG+ + L+++
Sbjct: 99 GLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSM 153
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 68.8 bits (168), Expect = 6e-14
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
G GTD + +I+ RS P L +VF +Y + + +++ E+I +E GD++ + +
Sbjct: 171 GVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNL 228
Score = 51.1 bits (122), Expect = 7e-08
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GT + I+ +RS + ++ S++ G L I ++ GD ++ L+ +
Sbjct: 250 KGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYL 303
Score = 50.3 bits (120), Expect = 1e-07
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
G DE T IL RS Q ++ Y T EL A+ SG ++ ++ +
Sbjct: 18 KGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGL 71
Score = 44.5 bits (105), Expect = 1e-05
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 45 GTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GTDE + I+C+R+ +L E+ Y + +L++ I + SGD ++ ++A+
Sbjct: 91 GTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVAL 143
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
RNR, radical enzyme, split SIGN metallocofactor; 1.36A
{Corynebacterium ammoniagenes} PDB: 1uzr_A*
Length = 296
Score = 68.5 bits (168), Expect = 6e-14
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 113 GLHCEFACLMFKHLVNKPSEER-------IKSIVLDAVLVEQEFLTEALPVKLIGMNCDL 165
+H + ++ V K SE ++ D E E+ + +G D
Sbjct: 202 SVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYD--DLGWTED- 258
Query: 166 MKQYIEYVADRLLVDLGCSKHY--FAENPF 193
+K+++ Y A++ L +LG +
Sbjct: 259 VKRFLRYNANKALNNLGYEGLFPTDETKVS 288
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 68.5 bits (167), Expect = 8e-14
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GE GTD + F IL TRSYP L VF +Y + H++++ + E GDI+ L +
Sbjct: 210 GERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLELKGDIENCLTVV 267
Score = 50.4 bits (120), Expect = 1e-07
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 34 WFEARRGELM---LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDI 90
F A + +GT T I+ +RS + ++ + Y L G L +AI E GD
Sbjct: 276 MFFAEKLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQKLYGISLCQAILDETKGDY 335
Query: 91 KEGLIAI 97
++ L+A+
Sbjct: 336 EKILVAL 342
Score = 49.2 bits (117), Expect = 3e-07
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
G DE+T IL R+ Q ++ + Y G LDEA+ + +G ++E +A+
Sbjct: 58 KGVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALAL 111
Score = 42.7 bits (100), Expect = 4e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 34 WFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEG 93
E R LGTDE T N IL +R+ ++ E+ Y +L + I + SGD ++
Sbjct: 120 ADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKA 179
Query: 94 LIAI 97
L+++
Sbjct: 180 LLSL 183
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 67.7 bits (165), Expect = 2e-13
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISP 99
GEL GTDE TF IL TRS L VF +Y T++G +++E I RE SGD+++ L+A+
Sbjct: 182 GELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVK 241
Query: 100 LTNYKPGF 107
P +
Sbjct: 242 CIRSVPAY 249
Score = 51.5 bits (123), Expect = 6e-08
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+GTDE T IL +R+ Q E+ S + TL G +L + + E +G + ++++
Sbjct: 30 MGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSL 83
Score = 51.1 bits (122), Expect = 7e-08
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GTD+ T ++ +RS L ++ ++ L + I ++ SGD ++ L+ +
Sbjct: 261 AGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLL 314
Score = 43.0 bits (101), Expect = 3e-05
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 34 WFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEG 93
+ GT+E IL +R+ ++ + Y L++ I E SG +
Sbjct: 92 AHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRL 151
Query: 94 LIAI 97
L+ +
Sbjct: 152 LVVL 155
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 65.8 bits (160), Expect = 6e-13
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISP 99
GE GTDE F +ILC+R+ L VF +Y ++ +++++I E SG ++ L+AI
Sbjct: 185 GEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIVK 244
Query: 100 LTNYKPGF 107
KP +
Sbjct: 245 CMRNKPAY 252
Score = 52.7 bits (126), Expect = 2e-08
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
LGTD+ST ++ +R+ + ++ + + L G L I + SGD ++ L+ +
Sbjct: 264 LGTDDSTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSFIKGDTSGDYRKVLLIL 317
Score = 50.0 bits (119), Expect = 2e-07
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
LGTDE +L R+ Q E+ + Y + G +L E + E S + ++ ++ +
Sbjct: 33 LGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSSNFEQVILGM 86
Score = 45.0 bits (106), Expect = 9e-06
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 43 MLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GTDE IL +R+ ++ + Y G L+E I + S + L+++
Sbjct: 104 GAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSL 158
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 64.6 bits (157), Expect = 2e-12
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+D+ +L TRS Q+ + Y G+++++ + + + L +
Sbjct: 184 ISNKAYSDDDVIR-VLATRSKAQINATLNHYKNEYGNDINKDLKADPKDEFLALLRST 240
Score = 52.6 bits (126), Expect = 2e-08
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GTDE ++CTR+ L + +Y L AI ++ GD ++ L+ +
Sbjct: 262 RGTDEGALTRVVCTRAEVDLKVIADEYQRRNSVPLTRAIVKDTHGDYEKLLLVL 315
Score = 48.8 bits (116), Expect = 4e-07
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GT+E IL R+ Q + Y G +L +A+ +E S D + ++
Sbjct: 32 WGTNEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLW 85
Score = 41.9 bits (98), Expect = 9e-05
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 43 MLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+ I CTRS QL Y+ L+E + +GD + L+ +
Sbjct: 103 RWTSSNQVLMEIACTRSANQLLHARQAYHARYKKSLEEDVAHHTTGDFHKLLLPL 157
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 63.8 bits (155), Expect = 3e-12
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 40 GELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISP 99
GE GTDE F ILC RS+PQL F +Y ++ ++ ++I E SG ++ L+AI
Sbjct: 186 GENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVN 245
Query: 100 LTNYKPGF 107
P F
Sbjct: 246 CVRNTPAF 253
Score = 53.4 bits (128), Expect = 1e-08
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+GTDE T N I+ +RS L ++ +++ G+ L AI + SGD + L+ I
Sbjct: 265 IGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKI 318
Score = 49.9 bits (119), Expect = 2e-07
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+GTDE +IL RS Q + +Y G EL + + + SG + ++A+
Sbjct: 34 IGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVAL 87
Score = 44.6 bits (105), Expect = 9e-06
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 43 MLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
GT+E IL TR+ Q+ ++ YYT+ L + I E SGD ++ L+ +
Sbjct: 105 GAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTL 159
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 61.2 bits (148), Expect = 3e-11
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 35 FEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYT-LTGHELDEAIGREFSGDIKEG 93
+A + + + ST+ I T + ++ Y G L + EF G +
Sbjct: 173 RKAIETKGVKKDEVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGVEDEFQGLDEYA 232
Query: 94 LIAI 97
Sbjct: 233 FKLA 236
Score = 46.1 bits (109), Expect = 3e-06
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 44 LGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
G+D + N I + Y + G DE E G + + +
Sbjct: 258 SGSDSNRLNRITAMHF-RECKGCKYYYKKVYGQAFDERCATELKGVYGDAIKLL 310
Score = 44.6 bits (105), Expect = 1e-05
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 36 EARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLI 95
R GTDE +L T ++ E+ YY L L + + ++ +
Sbjct: 89 LIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVVRKDCGDKYMWAKL 148
Query: 96 AIS 98
+
Sbjct: 149 INA 151
Score = 43.1 bits (101), Expect = 3e-05
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 44 LGTDESTFN--AILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 97
+ + I + QL + + +TG LD + + S D + ++ +
Sbjct: 23 CQDESKRLDLIEIARSYPPNQLRNMQRTFQAITGTFLDAFLKKHLSKDFESLVLML 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 34/206 (16%), Positives = 55/206 (26%), Gaps = 68/206 (33%)
Query: 24 PGITRSVCSLWFEARRGELMLGTDESTFN---AILCTRSYPQLAE-----VFSQYYTLTG 75
I S F + +G L T A+ + + T G
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSA-----TQFTQPALTLM-EKAAFEDLKSKGLIPADATFAG 1761
Query: 76 H---E------------LDEAI------G--------REFSGDIKEGLIAISPLTNYKPG 106
H E ++ + G R+ G G+IAI+P
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-GRVAAS 1820
Query: 107 FGLIMCGLHCEFACLMFKHLV-----NKPSEERIKSIV----LDAVLVEQEFLTEALPVK 157
F E LV N +++ V L A+ + +T L
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQ----YVAAGDLRAL----DTVTNVL--N 1870
Query: 158 LIG-MNCDLMK----QYIEYVADRLL 178
I D+++ +E V L
Sbjct: 1871 FIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 33.1 bits (75), Expect = 0.079
Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 79/219 (36%)
Query: 32 SLWFEARRGELMLGTDESTFNAIL--CTRSYPQ------LAEVFSQYYTLTGHELDEAIG 83
+ +F A + L ++ FN IL T + AE+ ++ ++
Sbjct: 25 ASFFIASQ----L-QEQ--FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP--- 74
Query: 84 REFSGDIKEGLIAISPLTNYKPGFGLIMCG--LHCEFACLMF------------------ 123
G + L LT ++ + + G +H A L+
Sbjct: 75 -SKVGQFDQVLNLC--LTEFENCY---LEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 124 -KHLVNKPSEERIKSIVLDAVLVEQEFLTEALPVKLI------GMNCD------------ 164
+ + +P +++ S + AV +L+ G D
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGN--------AQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 165 --LMKQYIEYVADRL--LV--DLGCSKHYFAENPFDFME 197
L+ I++ A+ L L+ L K + + +E
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGLNILE 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 3e-04
Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 68/238 (28%)
Query: 26 ITRSV-CSLWFEARRGELMLGTDESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGR 84
I + +WF+ + ++M+ ++ L S L E + T++ + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNK------LHKYS---LVEKQPKESTISIPSIYLELKV 437
Query: 85 EFSGD------------IKEGL----IAISPLTNYKPGFGLIMCGLHCEFACLMFKHLVN 128
+ + I + + L Y F ++ + HL N
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---F----------YSHIGH-HLKN 483
Query: 129 KPSEERI---KSIVLDAVLVEQEFLTEALPVKLIGMNCDLMKQ---YIEYVAD------R 176
ER+ + + LD +EQ+ ++ G + ++Q Y Y+ D R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 177 LLVDLGCSKHYFAENPFDFMENIS---LEGK-TNFFERKVGEYQKSSVMADQDNQVFR 230
L+ + DF+ I + K T+ + + ++ + QV R
Sbjct: 544 LVNAIL-----------DFLPKIEENLICSKYTDLLRIAL-MAEDEAIFEEAHKQVQR 589
Score = 31.0 bits (69), Expect = 0.37
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 48/145 (33%)
Query: 123 FKHLVNKPSEERIKSIVLDAVLVEQE----------------FLTEALPVKLIGMNCDLM 166
H++ + +L +QE FL + + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-T 109
Query: 167 KQYIEYVADRLLVDLGCSKHYFAENPFDFME------------NISLEGKTNFFERKVGE 214
+ YIE DRL D Y +++ N+ ++G G
Sbjct: 110 RMYIEQR-DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----G- 162
Query: 215 YQKSSVMAD----------QDNQVF 229
K+ V D D ++F
Sbjct: 163 --KTWVALDVCLSYKVQCKMDFKIF 185
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 31.5 bits (72), Expect = 0.23
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 159 IGMNCDLMKQYIEYVADRLLVDLGCSKHYFAENPFDFMENISLEG 203
IG + Y + D G + P D +E +
Sbjct: 18 IGGTVIE----VAYKDAHIFFDFGTEFRPELDLPDDHIETLINNR 58
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta
barrel, TRPF, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
c.1.2.4
Length = 203
Score = 29.8 bits (68), Expect = 0.48
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 19/69 (27%)
Query: 127 VNKPSEERIKSIV----LDAVLVEQ----------EFLTEALPV-KLIGMNCDLMKQYIE 171
+ E + ++ L Q E + PV K + ++ +
Sbjct: 60 RD-QPPEEVLRLMEEARLQVA---QLHGEEPPEWAEAVGRFYPVIKAFPLEGPARPEWAD 115
Query: 172 YVADRLLVD 180
Y A LL+D
Sbjct: 116 YPAQALLLD 124
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase,
mixed alpha/ protein, N-terminal rossmann-fold like;
2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Length = 280
Score = 29.4 bits (67), Expect = 0.83
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 70 YYTLTGHELDEAIGREFSGDIKEGLIAISP----LTNYK 104
YY L G +L + +KEG IAI+P L
Sbjct: 207 YYWLYGRDLAPEPETDVYVVLKEGGIAITPLTLNLNAVD 245
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 29.0 bits (66), Expect = 1.3
Identities = 4/27 (14%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 152 EALPVKLIGMNC----DLMKQYIEYVA 174
+ L + +G+NC + + + ++
Sbjct: 196 DELDIDALGINCSLGPEEILPIFQELS 222
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 27.5 bits (61), Expect = 4.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 25 GITRSVCSLWFEARR 39
G+T S+CSL F R
Sbjct: 263 GVTHSMCSLEFVDNR 277
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 27.1 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 156 VKLIGMNCDLMKQY---IEYVADR 176
VK+I LM + IE V DR
Sbjct: 254 VKII---LRLMGKGEELIELVEDR 274
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 27.2 bits (60), Expect = 5.6
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 15/69 (21%)
Query: 160 GMNCDL------MKQYIEYVADRLLVDLGCS-------KHYFAENPFDFMENISLEGKTN 206
M D+ ++ + ++ ++ KH +M + +
Sbjct: 315 LMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRD 374
Query: 207 FFERKVGEY 215
F VGE
Sbjct: 375 VFF--VGEA 381
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 27.1 bits (61), Expect = 5.6
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 156 VKLIGMNCDLMKQY---IEYVADR 176
++LI + M Q ++V DR
Sbjct: 264 LELI---LEKMGQPKDAYDHVTDR 284
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 27.1 bits (59), Expect = 5.7
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 60 YPQLA--EVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTN 102
YP + E F +Y E EA + +K I ++P +
Sbjct: 548 YPDIPKEEAFGKYCRPESQEHPEADPGSAAPYLKTKFICVTPFID 592
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 26.8 bits (60), Expect = 6.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 25 GITRSVCSLWFEARR 39
GIT S+C+L F+ R
Sbjct: 223 GITHSLCTLEFQDNR 237
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 26.5 bits (58), Expect = 10.0
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 47 DESTFNAILCTRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAISPLTNYKPG 106
D + C + V T + A GR F+G +K G NY PG
Sbjct: 363 DANCIAIKNCDPKADLMLYVSKMVPT-SDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPG 421
Query: 107 FGLIMCGLHCEFACLM 122
+ + LM
Sbjct: 422 KKDDLFIKAIQRVVLM 437
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.410
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,625,076
Number of extensions: 214346
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 92
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)