Query psy4804
Match_columns 332
No_of_seqs 188 out of 1482
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:10:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819|consensus 100.0 4E-90 8.6E-95 634.8 26.2 296 36-331 3-308 (321)
2 KOG0819|consensus 100.0 1.5E-46 3.2E-51 346.3 18.2 245 22-267 49-319 (321)
3 PF00191 Annexin: Annexin; In 99.7 5.9E-18 1.3E-22 124.2 7.9 66 53-118 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 4.4E-17 9.5E-22 119.6 8.0 66 125-190 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 4.7E-14 1E-18 98.9 6.4 53 66-118 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 3.3E-13 7.2E-18 94.6 5.8 53 138-190 1-53 (53)
7 TIGR02923 AhaC ATP synthase A1 53.4 2E+02 0.0044 27.1 12.3 100 60-170 13-114 (343)
8 PF04275 P-mevalo_kinase: Phos 45.3 35 0.00075 27.8 4.0 77 232-317 33-111 (116)
9 PRK01198 V-type ATP synthase s 45.2 2.7E+02 0.0059 26.3 15.1 102 57-170 16-120 (352)
10 KOG0859|consensus 42.2 52 0.0011 29.3 4.9 48 225-272 75-123 (217)
11 PF13766 ECH_C: 2-enoyl-CoA Hy 38.7 47 0.001 26.9 3.9 46 220-265 38-91 (118)
12 COG5118 BDP1 Transcription ini 34.6 41 0.00089 32.9 3.3 44 52-98 370-413 (507)
13 smart00717 SANT SANT SWI3, AD 33.1 1.2E+02 0.0025 19.0 4.5 38 49-87 4-42 (49)
14 PF00249 Myb_DNA-binding: Myb- 32.5 1.5E+02 0.0032 19.5 5.3 35 52-86 6-42 (48)
15 PF14003 YlbE: YlbE-like prote 32.5 76 0.0016 23.1 3.6 47 217-264 13-60 (65)
16 cd00171 Sec7 Sec7 domain; Doma 28.8 2.1E+02 0.0046 24.9 6.7 53 49-105 32-87 (185)
17 PF11264 ThylakoidFormat: Thyl 28.8 4E+02 0.0088 24.1 8.5 118 14-139 26-152 (216)
18 TIGR01223 Pmev_kin_anim phosph 28.0 2.1E+02 0.0045 25.2 6.3 75 233-317 37-113 (182)
19 PHA02148 hypothetical protein 27.1 80 0.0017 24.5 3.2 45 40-84 20-65 (110)
20 PF14003 YlbE: YlbE-like prote 26.3 1.3E+02 0.0029 21.8 4.0 45 147-191 16-61 (65)
21 PF13720 Acetyltransf_11: Udp 26.3 79 0.0017 23.9 3.1 26 150-175 27-54 (83)
22 cd00167 SANT 'SWI3, ADA2, N-Co 24.1 1.8E+02 0.0039 17.7 4.9 34 53-86 5-39 (45)
23 PF13043 DUF3903: Domain of un 21.5 84 0.0018 20.1 1.9 24 304-327 9-34 (40)
24 CHL00091 apcE phycobillisome l 21.2 1.1E+03 0.024 25.9 12.7 224 85-331 522-824 (877)
25 PF13062 DUF3924: Protein of u 20.4 84 0.0018 21.7 1.9 20 304-323 15-34 (62)
No 1
>KOG0819|consensus
Probab=100.00 E-value=4e-90 Score=634.80 Aligned_cols=296 Identities=48% Similarity=0.749 Sum_probs=289.4
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHhHhhhCCChHHHHHhhccccHHHHH
Q psy4804 36 PYPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGKFEDLI 115 (332)
Q Consensus 36 ~~~~~~ti~~~~~f~~~~Da~~L~~A~kg~gtde~~li~IL~~rs~~q~~~I~~~Y~~~yg~~L~~~l~se~sG~f~~ll 115 (332)
+++..|+++|.|+|+|..||+.|++||+||||||++||+||++|||+||+.|+++|+..||+||.++|++|+||+|++++
T Consensus 3 ~~~~~~t~~~~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i 82 (321)
T KOG0819|consen 3 MAGMAGTVVPAPVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAI 82 (321)
T ss_pred CcCCCcccCCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHhhcCCCCcHHHHHHHHhhCCHHHHHHHHHHhHHhhchhHHHHhhhcccchhHHHHHHHhhccc
Q psy4804 116 IAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHI 195 (332)
Q Consensus 116 ~~l~~~~~~~dA~~L~~A~kg~gtde~~LieIl~trs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~ll~~~r 195 (332)
++|+.+|+++||.+|++||||+||||++||||+|||||.||++|+++|+..|++||++||.++|||+|+++|+.|++|.|
T Consensus 83 ~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R 162 (321)
T KOG0819|consen 83 VALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNR 162 (321)
T ss_pred HHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhh-------HHHHHHhccCCC---ccceeeeeccCCHHHHHHHHHHhhcccCCCHHHHhchhcCccHHHHHHHHH
Q psy4804 196 HLNSRAD-------ILHLITSHTNNM---VPILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIF 265 (332)
Q Consensus 196 ~e~~~~D-------A~~L~~A~~~~~---e~~l~~Il~~rs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Ll~lv 265 (332)
+|...+| |+.|++|+++++ ++.|++||++||++||+++|++|++.+|++|+++|++|++||++++|++++
T Consensus 163 ~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv 242 (321)
T KOG0819|consen 163 DEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIV 242 (321)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHH
Confidence 9876664 999999999888 678999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhHHHHHHHHhhcCCCCCccceeeEEeecChhhHHHHHHHHHHHhCCcHHHhHHhhhCCC
Q psy4804 266 KVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIELAWNVG 331 (332)
Q Consensus 266 ~~~~~~~~~~A~~L~~Am~g~gtdd~~Lirilvsr~e~dl~~Ik~~y~~~yg~~L~~~i~~~~~~~ 331 (332)
+|++|||.|||++||.||+|+||||.+||||+|||||+||..|+.+|+++||+||+++|++||+|+
T Consensus 243 ~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGd 308 (321)
T KOG0819|consen 243 KCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGD 308 (321)
T ss_pred HHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccch
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0819|consensus
Probab=100.00 E-value=1.5e-46 Score=346.34 Aligned_cols=245 Identities=29% Similarity=0.390 Sum_probs=217.3
Q ss_pred HhhhcccCCCCCCCC------------CCCCCcccCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHH
Q psy4804 22 IARSRIRFPPGPDFP------------YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIAT 89 (332)
Q Consensus 22 ~~~~~~~~~~~~~~~------------~~~~~ti~~~~~f~~~~Da~~L~~A~kg~gtde~~li~IL~~rs~~q~~~I~~ 89 (332)
+||+.|+.+.+.... ..+.-.++......++.||..|++||||+||||++||||||+|||.|+++|++
T Consensus 49 ~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~ 128 (321)
T KOG0819|consen 49 AQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQ 128 (321)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHH
Confidence 577777777655222 11111222222233455999999999999999999999999999999999999
Q ss_pred HhHhhhCCChHHHHHhhccccHHHHHHHhcCCC-----------hHHHHHHHHHhhcC-CCCcHHHHHHHHhhCCHHHHH
Q psy4804 90 RFKTLYGKDLIKDLKSELSGKFEDLIIAMMTPT-----------PLFLARELHHAMDG-IGTNEETLVEILCTASNADIH 157 (332)
Q Consensus 90 ~Y~~~yg~~L~~~l~se~sG~f~~ll~~l~~~~-----------~~~dA~~L~~A~kg-~gtde~~LieIl~trs~~~l~ 157 (332)
+|+..|+++|+++|.+++||+|+++|+.|+++. +..||+.|++|.+. +|||+..++.||++||..||+
T Consensus 129 aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~ 208 (321)
T KOG0819|consen 129 AYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLR 208 (321)
T ss_pred HHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999753 67899999999976 689999999999999999999
Q ss_pred HHHHHhHHhhchhHHHHhhhcccchhHHHHHHHhhcccCCcchhhHHHHHHhccCCC--ccceeeeeccCCHHHHHHHHH
Q psy4804 158 AIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNM--VPILHRVIKPRSYPQLAEVFS 235 (332)
Q Consensus 158 ~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~ll~~~r~e~~~~DA~~L~~A~~~~~--e~~l~~Il~~rs~~~L~~i~~ 235 (332)
.+.+.|++.+|+++++.|+.+++|+|+++|++++.|.+++...+ |+.|+.|+.|.. +.+++||+++|+..+|..|+.
T Consensus 209 ~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~n~~~yF-A~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ 287 (321)
T KOG0819|consen 209 LVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIRNPPAYF-AERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKE 287 (321)
T ss_pred HHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHcCHHHHH-HHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999876544 999999987654 899999999999999999999
Q ss_pred HhhcccCCCHHHHhchhcCccHHHHHHHHHHh
Q psy4804 236 QYYTLTGHELDEAIGREFSGDIKEGLIAIFKV 267 (332)
Q Consensus 236 ~Y~~~~g~~L~~~I~~e~sGd~~~~Ll~lv~~ 267 (332)
+|+++||++|.++|++.+||||+++|+++++.
T Consensus 288 ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~ 319 (321)
T KOG0819|consen 288 EFQRKYGKSLYSAIKGDTSGDYKKALLALLGG 319 (321)
T ss_pred HHHHHhCccHHHHHhhhccchHHHHHHHHhCC
Confidence 99999999999999999999999999999854
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.74 E-value=5.9e-18 Score=124.21 Aligned_cols=66 Identities=48% Similarity=0.807 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHhHhhhCCChHHHHHhhccccHHHHHHHh
Q psy4804 53 RDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGKFEDLIIAM 118 (332)
Q Consensus 53 ~Da~~L~~A~kg~gtde~~li~IL~~rs~~q~~~I~~~Y~~~yg~~L~~~l~se~sG~f~~ll~~l 118 (332)
.||+.|++|++|+|+||..+++||++||+.|+++|+++|+..||++|+++|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.70 E-value=4.4e-17 Score=119.57 Aligned_cols=66 Identities=47% Similarity=0.851 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHhhCCHHHHHHHHHHhHHhhchhHHHHhhhcccchhHHHHHHH
Q psy4804 125 FLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSI 190 (332)
Q Consensus 125 ~dA~~L~~A~kg~gtde~~LieIl~trs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~l 190 (332)
+||+.|++|++|+|+|+.++++||++||+.|+++|+++|+..||++|+++|+++++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.50 E-value=4.7e-14 Score=98.93 Aligned_cols=53 Identities=57% Similarity=0.868 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHhHhhhCCChHHHHHhhccccHHHHHHHh
Q psy4804 66 GTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGKFEDLIIAM 118 (332)
Q Consensus 66 gtde~~li~IL~~rs~~q~~~I~~~Y~~~yg~~L~~~l~se~sG~f~~ll~~l 118 (332)
||||..|++|+++||+.||++|+++|++.||++|+++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998875
No 6
>smart00335 ANX Annexin repeats.
Probab=99.42 E-value=3.3e-13 Score=94.60 Aligned_cols=53 Identities=49% Similarity=0.893 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHhhCCHHHHHHHHHHhHHhhchhHHHHhhhcccchhHHHHHHH
Q psy4804 138 GTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSI 190 (332)
Q Consensus 138 gtde~~LieIl~trs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~l 190 (332)
||||.+|++|+++||+.|+..|+++|+..||++|.++|+++++|+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998864
No 7
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=53.36 E-value=2e+02 Score=27.14 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHhHhhhCCChHHHHHhhc-cccHHHHHHHhcCCChHHHHHHHHHhhcCCC
Q psy4804 60 KAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSEL-SGKFEDLIIAMMTPTPLFLARELHHAMDGIG 138 (332)
Q Consensus 60 ~A~kg~gtde~~li~IL~~rs~~q~~~I~~~Y~~~yg~~L~~~l~se~-sG~f~~ll~~l~~~~~~~dA~~L~~A~kg~g 138 (332)
+|+++.=.+.+.+-+++...|..+....-+. ..|+..|.+...+.. -+.++.++-.-+ ... -..+.+...|
T Consensus 13 r~~~~~lL~~~~~~~L~~~~s~~e~~~~L~~--t~Y~~~l~~~~~~~~~~~~iE~~L~~~l---~~~-~~~l~~~~~~-- 84 (343)
T TIGR02923 13 RAMESRLLKEEDFNELLEMRGTDEIVRFLEE--TDYKKELDELGSKSYGVDLIEHALDANL---AKT-YEKLFRISPG-- 84 (343)
T ss_pred HHHHHhcCCHHHHHHHHhCCCHHHHHHHhcC--CChHHHHHHhhhccCCHHHHHHHHHHHH---HHH-HHHHHHhCch--
Confidence 3555544566777788888787666544433 445554444321100 112222221110 111 1112222222
Q ss_pred CcHHHHHHHHhhCCHHHHHHHHHHhHHhh-chh
Q psy4804 139 TNEETLVEILCTASNADIHAIRHAYEREY-NSS 170 (332)
Q Consensus 139 tde~~LieIl~trs~~~l~~I~~~Y~~~y-g~s 170 (332)
...-+++.+.. .-|+.+|+..++.++ |.+
T Consensus 85 -~~~~~~~~~~~--~~di~Nik~ilR~~~~g~~ 114 (343)
T TIGR02923 85 -ASRDLIRLYLK--KWDVWNIKTLIRAKYANAS 114 (343)
T ss_pred -hHHHHHHHHHH--HHhHHHHHHHHHHHHcCCC
Confidence 22346666555 478999998888766 444
No 8
>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.
Probab=45.28 E-value=35 Score=27.79 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=39.2
Q ss_pred HHHHHhhcccCCCHHHHhch-hcCccHHHHHHHHHHhhcC-chhHHHHHHHHhhcCCCCCccceeeEEeecChhhHHHHH
Q psy4804 232 EVFSQYYTLTGHELDEAIGR-EFSGDIKEGLIAIFKVVLN-KPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIK 309 (332)
Q Consensus 232 ~i~~~Y~~~~g~~L~~~I~~-e~sGd~~~~Ll~lv~~~~~-~~~~~A~~L~~Am~g~gtdd~~Lirilvsr~e~dl~~Ik 309 (332)
.++.+|.+.+|-+|.+-+.. +..-.++..+.++-...++ .|.+|.+. |+++. .+..+.=|--.|-+.|+
T Consensus 33 p~K~~yA~~~glDl~~LL~d~~YKE~~R~~mi~w~e~~r~~dp~~Fcr~---a~~~~--~~~~V~iIsd~Rr~tdv---- 103 (116)
T PF04275_consen 33 PIKREYAEAHGLDLDRLLSDRAYKEQYRPDMIAWGEEQRNQDPGFFCRA---AVEEA--ADVDVWIISDMRRKTDV---- 103 (116)
T ss_dssp HHHHHHHHTTT-------------SSHHHHHHHHHHHHHHH-TTTTHHH---HSBT------SEEEE----SHHHH----
T ss_pred HHHHHHHHHhCcCHHHHhcCcchHHHHHHHHHHHHHHHHhhCcchHHHH---HHHhh--ccCCeEEEeCCCcccHH----
Confidence 68999999999999998854 4567788888888775443 45666653 55544 22222222235888888
Q ss_pred HHHHHHhC
Q psy4804 310 KVYGEMFH 317 (332)
Q Consensus 310 ~~y~~~yg 317 (332)
+.|++.||
T Consensus 104 ~~F~~~~~ 111 (116)
T PF04275_consen 104 AWFRENYG 111 (116)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHcc
Confidence 56777776
No 9
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=45.17 E-value=2.7e+02 Score=26.29 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=59.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHhHhhhCCChHHHHHhhc--cccHHHHHHHhcCCChHHHHHHHHHhh
Q psy4804 57 ILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSEL--SGKFEDLIIAMMTPTPLFLARELHHAM 134 (332)
Q Consensus 57 ~L~~A~kg~gtde~~li~IL~~rs~~q~~~I~~~Y~~~yg~~L~~~l~se~--sG~f~~ll~~l~~~~~~~dA~~L~~A~ 134 (332)
.--+|+.+-=.+++.+-+++...|.++....-+ ...|+..|.+ +.+.. .+.++.++-.-+ ...-..+.+..
T Consensus 16 ~rira~~~~lL~~~~~~~L~~~~s~~e~~~~L~--~t~Y~~~l~~-~~~~~~~~~~~E~~L~~~l----~~~~~~l~~~~ 88 (352)
T PRK01198 16 ARVRVREAKLLDREKYERLLEMKSLEEIIRFLE--ETEYKEEIDE-LGSRYSGPDLIEKALNRNL----AKTYELLLEIS 88 (352)
T ss_pred HHHHHHHHccCCHHHHHHHHhCCCHHHHHHHHh--cCCcHHHHHH-hcccccchhHHHHHHHHHH----HHHHHHHHHHC
Confidence 334556555567788889999999999877766 4557777654 22211 123444433211 11112222222
Q ss_pred cCCCCcHHHHHHHHhhCCHHHHHHHHHHhHHhh-chh
Q psy4804 135 DGIGTNEETLVEILCTASNADIHAIRHAYEREY-NSS 170 (332)
Q Consensus 135 kg~gtde~~LieIl~trs~~~l~~I~~~Y~~~y-g~s 170 (332)
. .+...+++++..+ -|+.+|+..++..+ |++
T Consensus 89 ~---~~~~~~~~~~~~~--~di~NIk~ilr~~~~g~~ 120 (352)
T PRK01198 89 P---GRLKELVDVYLRK--WDIHNIKTLLRGKILGLD 120 (352)
T ss_pred c---chHHHHHHHHHHH--HhHHHHHHHHHHHHhCCC
Confidence 2 2335688888877 78999998888765 444
No 10
>KOG0859|consensus
Probab=42.23 E-value=52 Score=29.34 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHhhcccCCCHHHHhchhcCccHHHHHHHHHH-hhcCch
Q psy4804 225 RSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFK-VVLNKP 272 (332)
Q Consensus 225 rs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Ll~lv~-~~~~~~ 272 (332)
+...-|+.|++.|.+.||.....++.-.+..+|...|..-+. |..+|.
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~ 123 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE 123 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc
Confidence 467889999999999999999999998899999998887555 455554
No 11
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=38.68 E-value=47 Score=26.87 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=36.8
Q ss_pred eeeccCCHHHHHHHHHHhhcccCCCHHHHhchhc--------CccHHHHHHHHH
Q psy4804 220 RVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREF--------SGDIKEGLIAIF 265 (332)
Q Consensus 220 ~Il~~rs~~~L~~i~~~Y~~~~g~~L~~~I~~e~--------sGd~~~~Ll~lv 265 (332)
..|.++||.-|..+++.+.+-.+.+|.+++..|+ .|||.+++.+++
T Consensus 38 ~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 38 ETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4567899999999999999999999999998874 478888877754
No 12
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=34.64 E-value=41 Score=32.85 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHhHhhhCCC
Q psy4804 52 ERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKD 98 (332)
Q Consensus 52 ~~Da~~L~~A~kg~gtde~~li~IL~~rs~~q~~~I~~~Y~~~yg~~ 98 (332)
..+.+..|+|+.-||||-..|-.+..+|+.. +|+.-|.+.-.+.
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~Rk---qIKaKfi~Eek~n 413 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRERK---QIKAKFIKEEKVN 413 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchhHH---HHHHHHHHHhhhC
Confidence 3589999999999999999998888877654 4566666544433
No 13
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.07 E-value=1.2e+02 Score=19.02 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHhcCC-CCHHHHHHHHhCCCHHHHHHH
Q psy4804 49 FDPERDAEILRKAMKGFG-TDEKAIISVLAARTNAQRQEI 87 (332)
Q Consensus 49 f~~~~Da~~L~~A~kg~g-tde~~li~IL~~rs~~q~~~I 87 (332)
+.++ +...|.+++...| .+=..|.+.+.+||+.|...-
T Consensus 4 Wt~~-E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 4 WTEE-EDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred CCHH-HHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 4444 5567888888888 888899999999999987644
No 14
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=32.52 E-value=1.5e+02 Score=19.45 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHh-CCCHHHHHH
Q psy4804 52 ERDAEILRKAMKGFGTD-EKAIISVLA-ARTNAQRQE 86 (332)
Q Consensus 52 ~~Da~~L~~A~kg~gtd-e~~li~IL~-~rs~~q~~~ 86 (332)
+.+-+.|.+|++-.|.+ =..|.+-+. +||..|...
T Consensus 6 ~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 6 EEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 34677889999999998 788888888 999998754
No 15
>PF14003 YlbE: YlbE-like protein
Probab=32.50 E-value=76 Score=23.07 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=34.2
Q ss_pred ceeeeeccCCHHHHHHHHHHhhcccCCCHHHHhchhcCc-cHHHHHHHH
Q psy4804 217 ILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSG-DIKEGLIAI 264 (332)
Q Consensus 217 ~l~~Il~~rs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sG-d~~~~Ll~l 264 (332)
.|.++| +|+|.++...-.++...||+++-+.|++-..+ .+...++..
T Consensus 13 ~WYR~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M 60 (65)
T PF14003_consen 13 IWYRIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEM 60 (65)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHH
Confidence 345554 59999999999999999999999999765443 233344333
No 16
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=28.83 E-value=2.1e+02 Score=24.93 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHhHhhh---CCChHHHHHh
Q psy4804 49 FDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLY---GKDLIKDLKS 105 (332)
Q Consensus 49 f~~~~Da~~L~~A~kg~gtde~~li~IL~~rs~~q~~~I~~~Y~~~y---g~~L~~~l~s 105 (332)
-+|..-|.-|+.. -|.|...|-++|+... +--..+.+.|-..+ |.++.+.|+.
T Consensus 32 ~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 32 DSPKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred CCHHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 4567777877776 4689999999999987 45588888899886 7888888864
No 17
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=28.77 E-value=4e+02 Score=24.08 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCccc-CCCCCChHHHHHHHHHHH-hcCCCCHHHHHHHHhCCCHHHHHHHHHHh
Q psy4804 14 TQFIACLVIARSRIRFPPGPDFPYPGRPSVV-PAHPFDPERDAEILRKAM-KGFGTDEKAIISVLAARTNAQRQEIATRF 91 (332)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~-~~~~f~~~~Da~~L~~A~-kg~gtde~~li~IL~~rs~~q~~~I~~~Y 91 (332)
+-.+-..--.|++..+-..|=+.-|..-+.- =..+|.|+.|-..|.+|+ +..|-|.+.+- .+-+.+.+..
T Consensus 26 ~ELLVe~HLl~~n~~F~yD~lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r--------~dA~~l~~~a 97 (216)
T PF11264_consen 26 DELLVELHLLSVNKDFQYDPLFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYR--------QDAEKLEEWA 97 (216)
T ss_pred HHHHHHHHHHHhccCceeCchHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHH
Confidence 3344455566788888887755543322221 134688899999999995 66777766552 2334455555
Q ss_pred HhhhCCChHHHHHhh---ccccHHHHHHHhcCCC----hHHHHHHHHHhhcCCCC
Q psy4804 92 KTLYGKDLIKDLKSE---LSGKFEDLIIAMMTPT----PLFLARELHHAMDGIGT 139 (332)
Q Consensus 92 ~~~yg~~L~~~l~se---~sG~f~~ll~~l~~~~----~~~dA~~L~~A~kg~gt 139 (332)
+.....+|...+... -.+.+...+.+...++ ..+.|.-|..-|.-.+.
T Consensus 98 ~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~LLe~a~~ 152 (216)
T PF11264_consen 98 KGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRLLELAGA 152 (216)
T ss_pred HcCCHHHHHHHHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCc
Confidence 555666666666543 2223555555554443 45667777777765443
No 18
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=28.02 E-value=2.1e+02 Score=25.21 Aligned_cols=75 Identities=13% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHhhcccCCCHHHHhch-hcCccHHHHHHHHHHhhcCc-hhHHHHHHHHhhcCCCCCccceeeEEeecChhhHHHHHH
Q psy4804 233 VFSQYYTLTGHELDEAIGR-EFSGDIKEGLIAIFKVVLNK-PGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKK 310 (332)
Q Consensus 233 i~~~Y~~~~g~~L~~~I~~-e~sGd~~~~Ll~lv~~~~~~-~~~~A~~L~~Am~g~gtdd~~Lirilvsr~e~dl~~Ik~ 310 (332)
|+.+|...+|.++..-+.. ...+.++..|..+-...++. |.+|.+..+.++.- ..+=|--.|.+.|+ +
T Consensus 37 iK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~F~r~~~~~~~~------~v~iIsD~Rr~~dv----~ 106 (182)
T TIGR01223 37 LKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQ------PIWLVSDTRRVSDI----Q 106 (182)
T ss_pred HHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccHHHHHHHhccCC------CEEEEeCCCcccHH----H
Q ss_pred HHHHHhC
Q psy4804 311 VYGEMFH 317 (332)
Q Consensus 311 ~y~~~yg 317 (332)
.|++.||
T Consensus 107 ~f~~~~g 113 (182)
T TIGR01223 107 WFREAYG 113 (182)
T ss_pred HHHHHcC
No 19
>PHA02148 hypothetical protein
Probab=27.14 E-value=80 Score=24.50 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCcccCCCCCChHHHHHHHHHHHh-cCCCCHHHHHHHHhCCCHHHH
Q psy4804 40 RPSVVPAHPFDPERDAEILRKAMK-GFGTDEKAIISVLAARTNAQR 84 (332)
Q Consensus 40 ~~ti~~~~~f~~~~Da~~L~~A~k-g~gtde~~li~IL~~rs~~q~ 84 (332)
.|++.|.|.-+....|-+|.+-++ ...+|...|-+|..+|-|+=+
T Consensus 20 ~P~v~~~~i~~~k~~A~E~FK~iE~RIA~D~~~L~~~A~~R~NEL~ 65 (110)
T PHA02148 20 EPTVTPLPISDLKVEAFELFKKIEERIAHDQTRLEELAKSRENELR 65 (110)
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 356666666666777888888774 588999999999988877533
No 20
>PF14003 YlbE: YlbE-like protein
Probab=26.32 E-value=1.3e+02 Score=21.83 Aligned_cols=45 Identities=4% Similarity=0.191 Sum_probs=33.9
Q ss_pred HHhhCCHHHHHHHHHHhHHhhchhHHHHhhhcccc-hhHHHHHHHh
Q psy4804 147 ILCTASNADIHAIRHAYEREYNSSLERDLAGETSG-NFKRLLVSIS 191 (332)
Q Consensus 147 Il~trs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG-~~~~lLl~ll 191 (332)
...+|.|.++.....++...|++++-+.|.+-..+ .+-.+++.++
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 45789999999999999999999999988874443 2334444433
No 21
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=26.26 E-value=79 Score=23.88 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=18.3
Q ss_pred hCCHHHHHHHHHHhHHhhch--hHHHHh
Q psy4804 150 TASNADIHAIRHAYEREYNS--SLERDL 175 (332)
Q Consensus 150 trs~~~l~~I~~~Y~~~yg~--sL~~~I 175 (332)
+-+++++.+|+++|+..|.. ++++.+
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~ 54 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEAL 54 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35788999999999999953 444444
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=24.12 E-value=1.8e+02 Score=17.75 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHhCCCHHHHHH
Q psy4804 53 RDAEILRKAMKGFG-TDEKAIISVLAARTNAQRQE 86 (332)
Q Consensus 53 ~Da~~L~~A~kg~g-tde~~li~IL~~rs~~q~~~ 86 (332)
.+-..|.+++...| .+=..|.+.+.+||..|.+.
T Consensus 5 eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 45667778888888 78888999999999987754
No 23
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=21.48 E-value=84 Score=20.07 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhCCcHH--HhHHhh
Q psy4804 304 DMLDIKKVYGEMFHTSVE--ADIELA 327 (332)
Q Consensus 304 dl~~Ik~~y~~~yg~~L~--~~i~~~ 327 (332)
-++.++.+-++.|||+|- ..|..|
T Consensus 9 ai~kvr~eckrrfgktlllqtei~ee 34 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTLLLQTEIKEE 34 (40)
T ss_pred HHHHHHHHHHHHhchhhhhhhHhhHH
Confidence 467889999999999973 345444
No 24
>CHL00091 apcE phycobillisome linker protein
Probab=21.19 E-value=1.1e+03 Score=25.89 Aligned_cols=224 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHhHhhhCCCh-------HHHHHhhccc---cHHHHHHHhcC-------------------------------CCh
Q psy4804 85 QEIATRFKTLYGKDL-------IKDLKSELSG---KFEDLIIAMMT-------------------------------PTP 123 (332)
Q Consensus 85 ~~I~~~Y~~~yg~~L-------~~~l~se~sG---~f~~ll~~l~~-------------------------------~~~ 123 (332)
..|+.+|.+.||+++ ...+++.+.. ..++.+-.|.. +..
T Consensus 522 ~vI~AaYrQVFgr~~~~~~r~~~~~lEsqL~nG~IsvREFIR~LakS~~fr~~f~~~~~~~k~IEl~~khlLGR~~~~~~ 601 (877)
T CHL00091 522 VIIKAAYLRVFGREVYEEEKIWLKPLENELRRRQISVREFVRQLAKSSVFRSLYWSPLYICKAIEYIHNRLLGRPTYGRQ 601 (877)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhhHHHHHhcCCccHHHHHHHHhccHHHHHhhccccCccchhhhhhccccCCCCCCHH
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHhhCCHHHHHHHHHHhHHhhchhHHHHhhhcccchhHHHHHHHhhcccCCcchhh-
Q psy4804 124 LFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRAD- 202 (332)
Q Consensus 124 ~~dA~~L~~A~kg~gtde~~LieIl~trs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~ll~~~r~e~~~~D- 202 (332)
+..+...--|-+|+ ..+|+-|+. ...|.+.||.+..-.-+.-|.++...-.+..-....+....++
T Consensus 602 Ei~~~~~i~a~~G~----~a~IDalvd---------S~EY~~~FGedtVPY~R~~t~~~l~~r~~~~s~~~~~~~~~~~~ 668 (877)
T CHL00091 602 EINKYFDIAYKSGF----YALIDALID---------SPEYIETFGNNTVPYERYSTPAGLALRILRLSIIDSKSAKVISS 668 (877)
T ss_pred HHHHHHHHHHhcCH----HHHHHHHhC---------cHHHHHHcCCCCCCeeecCCHhhhhhhhccCCCCcccccccCCC
Q ss_pred -------------------HHHHHHhccCCC--ccceeeeeccCCHHHHHH-HHHHhhcccCCCH--------HHHhchh
Q psy4804 203 -------------------ILHLITSHTNNM--VPILHRVIKPRSYPQLAE-VFSQYYTLTGHEL--------DEAIGRE 252 (332)
Q Consensus 203 -------------------A~~L~~A~~~~~--e~~l~~Il~~rs~~~L~~-i~~~Y~~~~g~~L--------~~~I~~e 252 (332)
++...+-+.... ...+.++....++.+++. |.++|++.+|+++ ...+++.
T Consensus 669 ~~~~fielg~~~~~~s~~~~~~~~~~Gvt~~req~~if~l~~~~s~~~~~~vI~AaYrQVfg~~~~~~~~~~r~~~lESq 748 (877)
T CHL00091 669 KEARFIELGQAKESRSSSSIQSRIQQGVSLLRDQSVVFKVNSHSDKENLEQVLRAAYRQIFERDLNSFIIGGEFLDIESA 748 (877)
T ss_pred CCCceeecCcccCCCCchhHHHHHhcCCCcCcCCCeeEecCCCCCHHHHHHHHHHHHHHHhcccchhhhhhhhhhhHHHH
Q ss_pred cC-cc--HHHHHHHHHHhhcCchhHHHHHHHHhhcCCCCCcccee----eEEeecChhhHHHHHHHHHHHhCCcHHHhHH
Q psy4804 253 FS-GD--IKEGLIAIFKVVLNKPGYFAQQLRGSVEGMGTHDRALI----RIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325 (332)
Q Consensus 253 ~s-Gd--~~~~Ll~lv~~~~~~~~~~A~~L~~Am~g~gtdd~~Li----rilvsr~e~dl~~Ik~~y~~~yg~~L~~~i~ 325 (332)
+. |+ .++.+..+.+.-.-..+||.. ...-.+| +.+..|...+-.+|.+...-.-.+-++..|.
T Consensus 749 LrnG~ItVReFVR~La~Se~Yr~~Ff~~----------~~nyR~IEl~~KHlLGRaP~~q~Ei~~~~~ila~~G~~A~Id 818 (877)
T CHL00091 749 FLNGQISVRELVEKLGSSSLYGKEFYQP----------YPNTKVIELGTKHFLGRAPNNQAEIRYYNQILASQGLAAFIS 818 (877)
T ss_pred HhcCCccHHHHHHHHHhhHHHHHHhCcC----------CCCceeeeeecccccCCCCCCHHHHHHHHHHHHhcChHHHHH
Q ss_pred hhhCCC
Q psy4804 326 LAWNVG 331 (332)
Q Consensus 326 ~~~~~~ 331 (332)
+-.+|+
T Consensus 819 s~idS~ 824 (877)
T CHL00091 819 TLVNSK 824 (877)
T ss_pred HHhCcH
No 25
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=20.39 E-value=84 Score=21.70 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhCCcHHHh
Q psy4804 304 DMLDIKKVYGEMFHTSVEAD 323 (332)
Q Consensus 304 dl~~Ik~~y~~~yg~~L~~~ 323 (332)
-|.-++++|+++.|.++.+.
T Consensus 15 kl~llkqayqkktgatises 34 (62)
T PF13062_consen 15 KLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHhhcCCccchh
Confidence 46778999999999998764
Done!