RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4804
(332 letters)
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 302 bits (774), Expect = e-102
Identities = 117/300 (39%), Positives = 176/300 (58%), Gaps = 10/300 (3%)
Query: 36 PYPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLY 95
+V A F+ DA++LRKAMKG GTDE AII VLA R AQRQEI T +K+
Sbjct: 4 METKGGTVKAASGFNATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTI 63
Query: 96 GKDLIKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNAD 155
G+DL++DLKSELS FE +I+ MMTPT L+ +EL AM G GT+E L+EIL + + +
Sbjct: 64 GRDLLEDLKSELSSNFEQVILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRNPEE 123
Query: 156 IHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRAD----------ILH 205
I I Y+++Y SLE D+ +TS F+R+LVS++ G + D +
Sbjct: 124 IRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSLTAGGRDEGNYLDDALVKQDAQDLYE 183
Query: 206 LITSHTNNMVPILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIF 265
++ R+ L VF +Y ++ +++++I E SG ++ L+AI
Sbjct: 184 AGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIV 243
Query: 266 KVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
K + NKP YFA++L S++G+GT D LIR++ R+EIDMLDI+ + ++ S+ + I+
Sbjct: 244 KCMRNKPAYFAERLYKSMKGLGTDDSTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSFIK 303
Score = 158 bits (400), Expect = 4e-46
Identities = 56/227 (24%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
D + LR+AMKG GTDE +I +LA+R + + I ++ YG+ L +D+ S+ S
Sbjct: 91 VLYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDICSDTSFM 150
Query: 111 FEDLIIAMM-------TPTPLFLARE----LHHAMDG-IGTNEETLVEILCTASNADIHA 158
F+ +++++ L ++ L+ A + GT+E + ILC+ + +
Sbjct: 151 FQRVLVSLTAGGRDEGNYLDDALVKQDAQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLH 210
Query: 159 IRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTNNMVPI 217
+ Y+R +E+ + ETSG+F+ L++I + + + A+ L+
Sbjct: 211 VFDEYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKPAYFAERLYKSMKGLGTDDST 270
Query: 218 LHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
L RV+ R+ + ++ + + L G L I + SGD ++ L+ +
Sbjct: 271 LIRVMVSRAEIDMLDIRANFKRLYGKSLYSFIKGDTSGDYRKVLLIL 317
Score = 128 bits (322), Expect = 1e-34
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKG-FGTDEKAIISVLAARTNAQRQEIATRFKTLYGKD 98
R ++DA+ L +A + +GTDE +S+L +R + +K + KD
Sbjct: 163 RDEGNYLDDALVKQDAQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKD 222
Query: 99 LIKDLKSELSGKFEDLIIAM---MTPTPLFLARELHHAMDGIGTNEETLVEILCTASNAD 155
+ + +KSE SG FED ++A+ M P + A L+ +M G+GT++ TL+ ++ + + D
Sbjct: 223 IEQSIKSETSGSFEDALLAIVKCMRNKPAYFAERLYKSMKGLGTDDSTLIRVMVSRAEID 282
Query: 156 IHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQG 193
+ IR ++R Y SL + G+TSG+++++L+ + G
Sbjct: 283 MLDIRANFKRLYGKSLYSFIKGDTSGDYRKVLLILCGG 320
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 301 bits (772), Expect = e-102
Identities = 126/296 (42%), Positives = 184/296 (62%), Gaps = 10/296 (3%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDL 99
R +V PFD DAE LRKAMKG GTDE+ I+ +L +R NAQRQEIA+ FKTL+G+DL
Sbjct: 5 RGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDL 64
Query: 100 IKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAI 159
+ DLKSEL+GKFE L++++M P +F A L HA+ G GTNE+ L EIL + + A++ I
Sbjct: 65 VDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNI 124
Query: 160 RHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRAD----------ILHLITS 209
+ Y +EY ++LE + GETSG+F+RLLV + Q + + R D +
Sbjct: 125 KQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGEL 184
Query: 210 HTNNMVPILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVL 269
++ RS L VF +Y T++G +++E I RE SGD+++ L+A+ K +
Sbjct: 185 KWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIR 244
Query: 270 NKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
+ P YFA+ L S++G GT D LIR++ RSEID+LDI+ + + F S+ I+
Sbjct: 245 SVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQ 300
Score = 153 bits (389), Expect = 2e-44
Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 13/227 (5%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
DA L+ A+KG GT+EK + +LA+RT A+ Q I + Y +L + E SG
Sbjct: 88 RIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGH 147
Query: 111 FEDLIIAMM-------TPTPLFLARE----LHHAMDG-IGTNEETLVEILCTASNADIHA 158
F+ L++ ++ L + L A + GT+EET + IL T S + +
Sbjct: 148 FQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRR 207
Query: 159 IRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTNNMVPI 217
+ Y +E + ETSG+ ++LL+++ + + + A+ L+
Sbjct: 208 VFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDT 267
Query: 218 LHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
L RV+ RS L ++ ++ L + I ++ SGD ++ L+ +
Sbjct: 268 LIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLL 314
Score = 128 bits (323), Expect = 6e-35
Identities = 41/153 (26%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 45 PAHPFDPERDAEILRKAMKG-FGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDL 103
E+DA++L +A + +GTDE+ I++L R+ + + + ++ T+ G + + +
Sbjct: 165 RVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETI 224
Query: 104 KSELSGKFEDLIIAMM---TPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIR 160
E SG E L++A++ P + A L+++M G GT+++TL+ ++ + S D+ IR
Sbjct: 225 DRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIR 284
Query: 161 HAYEREYNSSLERDLAGETSGNFKRLLVSISQG 193
H + + + SL + + +TSG++++ L+ + G
Sbjct: 285 HEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGG 317
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 300 bits (770), Expect = e-101
Identities = 130/296 (43%), Positives = 185/296 (62%), Gaps = 10/296 (3%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDL 99
+ +V P F+ DAE LRKAMKG GTDEK+I +LA R+NAQRQ+I T + TL+GK L
Sbjct: 3 QGTVKPHASFNSREDAETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHL 62
Query: 100 IKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAI 159
+LKSELSG +E +A++ FLA +LH AM G+GT++ L++ILCT SNA IHAI
Sbjct: 63 EDELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAI 122
Query: 160 RHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRAD----------ILHLITS 209
+ A++ Y LE+++ ETSGNF+RLLVS+ QG + + I
Sbjct: 123 KAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEG 182
Query: 210 HTNNMVPILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVL 269
+ V+ RSYPQL ++F +Y ++ + +AI EFSGDIK GL+AI K V
Sbjct: 183 QIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIENEFSGDIKNGLLAIVKSVE 242
Query: 270 NKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
N+ YFA++L +++G+GT D+ LIRI+ RSEID+ +IK+ + M+ S+ I
Sbjct: 243 NRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEFIA 298
Score = 156 bits (396), Expect = 1e-45
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 13/227 (5%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
E AE L AMKG GTD+ A+I +L ++NAQ I FK LY +DL K++ SE SG
Sbjct: 86 DEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGN 145
Query: 111 FEDLIIAMMTPTP-----------LFLARELHHAMDG-IGTNEETLVEILCTASNADIHA 158
F+ L+++M+ A ++ A +G IGT+E +L T S +H
Sbjct: 146 FQRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQ 205
Query: 159 IRHAYEREYNSSLERDLAGETSGNFKRLLVSISQG-HIHLNSRADILHLITSHTNNMVPI 217
I H Y + N ++ + + E SG+ K L++I + A+ LH
Sbjct: 206 IFHEYSKISNKTILQAIENEFSGDIKNGLLAIVKSVENRFAYFAERLHHAMKGLGTSDKT 265
Query: 218 LHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
L R++ RS LA + + + G L E I + SGD K+ L+ I
Sbjct: 266 LIRILVSRSEIDLANIKETFQAMYGKSLYEFIADDCSGDYKDLLLQI 312
Score = 72.7 bits (178), Expect = 9e-15
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
AE L AMKG GT +K +I +L +R+ I F+ +YGK L + + + SG
Sbjct: 245 FAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEFIADDCSGD 304
Query: 111 FEDLIIAMM 119
++DL++ +
Sbjct: 305 YKDLLLQIT 313
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Length = 327
Score = 300 bits (770), Expect = e-101
Identities = 114/304 (37%), Positives = 166/304 (54%), Gaps = 19/304 (6%)
Query: 37 YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYG 96
+V + F+P+ DAE L KAMKG GT+E+AII VL R+N QRQ+IA FK +G
Sbjct: 9 EQEGVTVKSSSHFNPDPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFG 68
Query: 97 KDLIKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADI 156
KDL + LKSELSGKFE LI+A+M P + A+ELH AM G+GT E ++EIL + + +
Sbjct: 69 KDLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQL 128
Query: 157 HAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVP 216
I AYE +Y SSLE D+ +TSG +R+LV + QG S L
Sbjct: 129 REIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQ---- 184
Query: 217 ILHRVIKP---------------RSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGL 261
L+ + RS L VF +Y + ++++I E G ++E +
Sbjct: 185 DLYAAGEKIRGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSETHGSLEEAM 244
Query: 262 IAIFKVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVE 321
+ + K N YFA++L +++G GT D LIR + RSEID+ IK + +M+ ++
Sbjct: 245 LTVVKCTQNLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLS 304
Query: 322 ADIE 325
+ I
Sbjct: 305 SMIM 308
Score = 160 bits (406), Expect = 5e-47
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 14/228 (6%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
+A+ L AMKG GT E II +LA+RT Q +EI ++ YG L +D++++ SG
Sbjct: 95 YRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGY 154
Query: 111 FEDLIIAMMT------PTPL------FLARELHHAMDG-IGTNEETLVEILCTASNADIH 157
E +++ ++ + + A++L+ A + GT+E + ILCT S +
Sbjct: 155 LERILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEKIRGTDEMKFITILCTRSATHLL 214
Query: 158 AIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTNNMVP 216
+ YE+ N S+E + ET G+ + ++++ + +L+S A+ L+
Sbjct: 215 RVFEEYEKIANKSIEDSIKSETHGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGAGTRDG 274
Query: 217 ILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
L R I RS L + + + G L I + SGD K L+++
Sbjct: 275 TLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSMIMEDTSGDYKNALLSL 322
Score = 71.5 bits (175), Expect = 3e-14
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
AE L AMKG GT + +I + +R+ I FK +YGK L + + SG
Sbjct: 255 HSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSMIMEDTSGD 314
Query: 111 FEDLIIAMMTPTP 123
+++ +++++ P
Sbjct: 315 YKNALLSLVGSDP 327
Score = 44.2 bits (104), Expect = 3e-05
Identities = 15/73 (20%), Positives = 35/73 (47%)
Query: 253 FSGDIKEGLIAIFKVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVY 312
+ I++ + + P A+ L +++G+GT+++A+I ++T RS I K +
Sbjct: 4 WKAWIEQEGVTVKSSSHFNPDPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSF 63
Query: 313 GEMFHTSVEADIE 325
F + ++
Sbjct: 64 KAQFGKDLTETLK 76
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 299 bits (767), Expect = e-101
Identities = 107/296 (36%), Positives = 174/296 (58%), Gaps = 10/296 (3%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDL 99
R +V F P DAE ++KA++G GTDEK +IS+L R+NAQRQ I ++ YGK+L
Sbjct: 9 RGTVRDYPDFSPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKEL 68
Query: 100 IKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAI 159
DLK +LSG FE L++A++TP +F A++L +M G GTNE+ L+EIL T ++ + I
Sbjct: 69 KDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDI 128
Query: 160 RHAYEREYNSSLERDLAGETSGNFKRLLVSISQG-------HIHLNSRADILHLITSHTN 212
AY Y SL D++ ETSG+F++ L++++ G ++ D L + N
Sbjct: 129 SQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKAGEN 188
Query: 213 NMVPILHRVIKP---RSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVL 269
+ + RS+PQL F +Y ++ ++ ++I E SG ++ L+AI V
Sbjct: 189 RWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVR 248
Query: 270 NKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
N P + A++L +++G+GT + L RI+ RSEID+LDI+ + + + S+ + I+
Sbjct: 249 NTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLYSAIK 304
Score = 153 bits (388), Expect = 3e-44
Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 52 ERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGKF 111
DA+ L+K+MKG GT+E A+I +L RT+ Q ++I+ + T+Y K L D+ SE SG F
Sbjct: 93 VFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDF 152
Query: 112 EDLIIAMM-------TPTPLFLARE----LHHAMDG-IGTNEETLVEILCTASNADIHAI 159
++ + LA++ L+ A + GT+E+ EILC S +
Sbjct: 153 RKALLTLADGRRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLT 212
Query: 160 RHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTNNMVPIL 218
Y + + GE SG+F+ LL++I + + A+ LH L
Sbjct: 213 FDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTL 272
Query: 219 HRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
+R++ RS L ++ +++ G+ L AI + SGD + L+ I
Sbjct: 273 NRIMVSRSEIDLLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKI 318
Score = 133 bits (335), Expect = 2e-36
Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKG-FGTDEKAIISVLAARTNAQRQEIATRFKTLYGKD 98
R + ++DA+IL KA + +GTDE +L R+ Q + ++ + KD
Sbjct: 164 RDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKD 223
Query: 99 LIKDLKSELSGKFEDLIIAMM---TPTPLFLARELHHAMDGIGTNEETLVEILCTASNAD 155
++ +K ELSG FEDL++A++ TP FLA LH A+ GIGT+E TL I+ + S D
Sbjct: 224 IVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEID 283
Query: 156 IHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQG 193
+ IR +++ Y SL + +TSG+++ L+ I G
Sbjct: 284 LLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKICGG 321
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 297 bits (761), Expect = e-100
Identities = 98/288 (34%), Positives = 168/288 (58%), Gaps = 11/288 (3%)
Query: 49 FDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELS 108
FD ERDA + A+K G DE I+++L R+NAQRQ+IA ++ K+L LKS LS
Sbjct: 2 FDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALS 61
Query: 109 GKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYN 168
G E +I+ ++ + A EL +M G+GT+E++L+EI+C+ +N ++ I Y+ Y
Sbjct: 62 GHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYK 121
Query: 169 SSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNM-----------VPI 217
+ LE+D+ +TSG+F++L+V++++G + LI ++ VP
Sbjct: 122 TDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPK 181
Query: 218 LHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVLNKPGYFAQ 277
++ RS P L +VF +Y + + +++ E+I +E GD++ + + + + NKP YFA
Sbjct: 182 WISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFAD 241
Query: 278 QLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
+L S++G GT D+ LIRI+ RSE+DML I+ + + S+ I+
Sbjct: 242 RLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQ 289
Score = 160 bits (405), Expect = 5e-47
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 14/228 (6%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
+ DA L+ +MKG GTDE ++I ++ +RTN + QEI +K +Y DL KD+ S+ SG
Sbjct: 76 AQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGD 135
Query: 111 FEDLIIAMMTPTP------------LFLARELHHAMDG-IGTNEETLVEILCTASNADIH 157
F L++A+ AR+L+ A GT+ + I+ S +
Sbjct: 136 FRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQ 195
Query: 158 AIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTNNMVP 216
+ Y+ + + E G+ + +++ Q + AD L+
Sbjct: 196 KVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDK 255
Query: 217 ILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
+L R++ RS + ++ S++ G L I ++ GD ++ L+ +
Sbjct: 256 VLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYL 303
Score = 129 bits (325), Expect = 3e-35
Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 52 ERDAEILRKAMKG-FGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
++DA L A GTD IS++ R+ Q++ R+K+ D+++ ++ E+ G
Sbjct: 161 DQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGD 220
Query: 111 FEDL---IIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREY 167
E+ ++ + PL+ A L+ +M G GT ++ L+ I+ + S D+ IR ++R+Y
Sbjct: 221 LENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKY 280
Query: 168 NSSLERDLAGETSGNFKRLLVSISQG 193
SL + +T G++++ L+ + G
Sbjct: 281 GKSLYYYIQQDTKGDYQKALLYLCGG 306
Score = 44.9 bits (106), Expect = 2e-05
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 276 AQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIELAW 328
A + +++ G + ++ I+T RS DI Y + + ++ A
Sbjct: 8 ALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSAL 60
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 298 bits (764), Expect = e-100
Identities = 102/312 (32%), Positives = 162/312 (51%), Gaps = 20/312 (6%)
Query: 29 FPPGPDFPYPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIA 88
+V P F+P D E L KA+ G DE II +L RTNAQRQ+I
Sbjct: 22 IKTVKGSKGGPGSAVSPYPTFNPSSDVEALHKAITVKGVDEATIIEILTKRTNAQRQQIK 81
Query: 89 TRFKTLYGKDLIKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEIL 148
+ GK L + LK L+G E++ +A++ F A EL AM G+GT+E+TL EIL
Sbjct: 82 AAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAMKGLGTDEDTLNEIL 141
Query: 149 CTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLIT 208
+ +N +I I Y+ E L +D+ +TSG++++ L+S+++G R++ L +
Sbjct: 142 ASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKG-----DRSEDLAIND 196
Query: 209 SHTNNMVPILHRVIKP---------------RSYPQLAEVFSQYYTLTGHELDEAIGREF 253
+ L+ + RSYP L VF +Y + H++++ + E
Sbjct: 197 DLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLEL 256
Query: 254 SGDIKEGLIAIFKVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYG 313
GDI+ L + K +KP +FA++L +++G+GT + LIRI+ RSEIDM DIK Y
Sbjct: 257 KGDIENCLTVVVKCATSKPMFFAEKLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQ 316
Query: 314 EMFHTSVEADIE 325
+++ S+ I
Sbjct: 317 KLYGISLCQAIL 328
Score = 157 bits (397), Expect = 2e-45
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 13/227 (5%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
+ DA+ LR AMKG GTDE + +LA+RTN + +EI +K +DL KD+ S+ SG
Sbjct: 116 AQFDADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGD 175
Query: 111 FEDLIIAMMTPTP-----------LFLARELHHAMDG-IGTNEETLVEILCTASNADIHA 158
++ ++++ AR L+ A + GT+ + IL T S +
Sbjct: 176 YQKALLSLAKGDRSEDLAINDDLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRR 235
Query: 159 IRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTNNMVPI 217
+ Y + + + L E G+ + L + + A+ LH
Sbjct: 236 VFQKYSKYSKHDMNKVLDLELKGDIENCLTVVVKCATSKPMFFAEKLHQAMKGIGTRHKT 295
Query: 218 LHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
L R++ RS + ++ + Y L G L +AI E GD ++ L+A+
Sbjct: 296 LIRIMVSRSEIDMNDIKACYQKLYGISLCQAILDETKGDYEKILVAL 342
Score = 130 bits (328), Expect = 3e-35
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKG-FGTDEKAIISVLAARTNAQRQEIATRFKTLYGKD 98
R + + + DA L +A + GTD I++L R+ + + ++ D
Sbjct: 188 RSEDLAINDDLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHD 247
Query: 99 LIKDLKSELSGKFEDLIIA---MMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNAD 155
+ K L EL G E+ + T P+F A +LH AM GIGT +TL+ I+ + S D
Sbjct: 248 MNKVLDLELKGDIENCLTVVVKCATSKPMFFAEKLHQAMKGIGTRHKTLIRIMVSRSEID 307
Query: 156 IHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQG 193
++ I+ Y++ Y SL + + ET G+++++LV++ G
Sbjct: 308 MNDIKACYQKLYGISLCQAILDETKGDYEKILVALCGG 345
Score = 44.2 bits (104), Expect = 3e-05
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 276 AQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIELAW 328
+ L ++ G + +I I+T R+ IK Y + ++ ++ A
Sbjct: 48 VEALHKAITVKGVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKAL 100
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 307 bits (787), Expect = e-100
Identities = 116/308 (37%), Positives = 182/308 (59%), Gaps = 20/308 (6%)
Query: 33 PDFPYPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFK 92
P R S+ FDP +DAE L AMKGFG+D++AI+ ++ +R+N QRQE+ +K
Sbjct: 3 PAQGAKYRGSIHDFPGFDPNQDAEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSYK 62
Query: 93 TLYGKDLIKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTAS 152
+LYGKDLI DLK EL+GKFE LI+ +M P A+E+ A+ GIGT+E+ L+EIL + +
Sbjct: 63 SLYGKDLIADLKYELTGKFERLIVGLMRPPAYCDAKEIKDAISGIGTDEKCLIEILASRT 122
Query: 153 NADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTN 212
N +H + AY+ Y LE D+ G+TSG+F+++LV + QG +R + +
Sbjct: 123 NEQMHQLVAAYKDAYERDLEADIIGDTSGHFQKMLVVLLQG-----TREEDDVVSEDLVQ 177
Query: 213 NMVPILHRVIKP---------------RSYPQLAEVFSQYYTLTGHELDEAIGREFSGDI 257
V L+ + RS L VF +Y TG ++ +I E SGD
Sbjct: 178 QDVQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDF 237
Query: 258 KEGLIAIFKVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFH 317
++ ++A+ K + + P YFA++L +++G+GT D LIRI+ RSE+DMLDI++++ +
Sbjct: 238 EKLMLAVVKCIRSTPEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYE 297
Query: 318 TSVEADIE 325
S+ + I+
Sbjct: 298 KSLYSMIK 305
Score = 299 bits (766), Expect = 1e-96
Identities = 117/304 (38%), Positives = 184/304 (60%), Gaps = 15/304 (4%)
Query: 37 YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYG 96
+ V PA+ F+P+ DA+ LRKAMKG GTDE II ++ R+N QRQ+I FK+ +G
Sbjct: 350 VELKGDVRPANDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFG 409
Query: 97 KDLIKDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADI 156
+DL+ DLKSE+SG LI+ +M P + A++L AM+G GT+E+ L+EIL T +NA+I
Sbjct: 410 RDLMTDLKSEISGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEI 469
Query: 157 HAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVP 216
AI AY+ +Y+ SLE L+ +TSG+F+R+L+S++ GH + +
Sbjct: 470 RAINEAYKEDYHKSLEDALSSDTSGHFRRILISLATGHREEGGENLDQAREDAQVAAEIL 529
Query: 217 ILH---------------RVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGL 261
+ ++ RSYP L VF ++ +T ++++ I +E SGD+++
Sbjct: 530 EIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGDVRDAF 589
Query: 262 IAIFKVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVE 321
+AI + V NKP +FA +L S++G GT D+ L RI+ RSEID+L+I++ + E + S+
Sbjct: 590 VAIVQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLH 649
Query: 322 ADIE 325
IE
Sbjct: 650 QAIE 653
Score = 181 bits (461), Expect = 3e-52
Identities = 76/316 (24%), Positives = 140/316 (44%), Gaps = 45/316 (14%)
Query: 52 ERDAEILRKAMKG-FGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
++D + L +A + +GTDE I +L R+ + + + GK + ++ ELSG
Sbjct: 177 QQDVQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGD 236
Query: 111 FEDLIIAM---MTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREY 167
FE L++A+ + TP + A L AM G+GT + TL+ I+ + S D+ IR + +Y
Sbjct: 237 FEKLMLAVVKCIRSTPEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKY 296
Query: 168 NSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVP----------- 216
SL + +TSG +K+ L+ +S G + ++ +
Sbjct: 297 EKSLYSMIKNDTSGEYKKTLLKLSGGDDDAAGQFFPEAAQVAYQMWELSAVARVELKGDV 356
Query: 217 -------------ILHRVIKP--------------RSYPQLAEVFSQYYTLTGHELDEAI 249
L + +K RS Q ++ + + G +L +
Sbjct: 357 RPANDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDL 416
Query: 250 GREFSGDIKEGLIAIFKVVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIK 309
E SGD+ ++ + + Y A+QL+ ++EG GT ++ALI I+ R+ ++ I
Sbjct: 417 KSEISGDLARLILGLM---MPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIRAIN 473
Query: 310 KVYGEMFHTSVEADIE 325
+ Y E +H S+E +
Sbjct: 474 EAYKEDYHKSLEDALS 489
Score = 164 bits (417), Expect = 5e-46
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 18/232 (7%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
DA+ L+KAM+G GTDEKA+I +LA RTNA+ + I +K Y K L L S+ SG
Sbjct: 436 AHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDALSSDTSGH 495
Query: 111 FEDLIIAMMTPT----------------PLFLARELHHAMDG-IGTNEETLVEILCTASN 153
F ++I++ T E+ G + E + ILCT S
Sbjct: 496 FRRILISLATGHREEGGENLDQAREDAQVAAEILEIADTPSGDKTSLETRFMTILCTRSY 555
Query: 154 ADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTN 212
+ + + + N +E + E SG+ + V+I Q + AD L+
Sbjct: 556 PHLRRVFQEFIKMTNYDVEHTIKKEMSGDVRDAFVAIVQSVKNKPLFFADKLYKSMKGAG 615
Query: 213 NMVPILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAI 264
L R++ RS L + ++ L +AI + SGD + L+A+
Sbjct: 616 TDDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGDFLKALLAL 667
Score = 147 bits (371), Expect = 1e-39
Identities = 68/331 (20%), Positives = 131/331 (39%), Gaps = 60/331 (18%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
PE AE L KAMKG GT + +I ++ +R+ +I F+T Y K L +K++ SG+
Sbjct: 252 PEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGE 311
Query: 111 FEDLIIAMM------------------------------------TPTPLFL----AREL 130
++ ++ + P F A+ L
Sbjct: 312 YKKTLLKLSGGDDDAAGQFFPEAAQVAYQMWELSAVARVELKGDVRPANDFNPDADAKAL 371
Query: 131 HHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSI 190
AM G+GT+E+T+++I+ SN IR ++ + L DL E SG+ RL++ +
Sbjct: 372 RKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGL 431
Query: 191 SQGHIHLNSRADILH--LITSHTNNMVPILHRVIKPRSYPQLAEVFSQYYTLTGHELDEA 248
H A L + + T+ L ++ R+ ++ + Y L++A
Sbjct: 432 MMPPAH--YDAKQLKKAMEGAGTDEKA--LIEILATRTNAEIRAINEAYKEDYHKSLEDA 487
Query: 249 IGREFSGDIKEGLIAIFK-------------VVLNKPGYFAQQLRGSVEG-MGTHDRALI 294
+ + SG + LI++ + ++ + G + + +
Sbjct: 488 LSSDTSGHFRRILISLATGHREEGGENLDQAREDAQVAAEILEIADTPSGDKTSLETRFM 547
Query: 295 RIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
I+ RS + + + + +M + VE I+
Sbjct: 548 TILCTRSYPHLRRVFQEFIKMTNYDVEHTIK 578
Score = 128 bits (322), Expect = 4e-33
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 52 ERDAEILRKAMKG-FGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
+ + G + E +++L R+ + + F + D+ +K E+SG
Sbjct: 525 AAEILEIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGD 584
Query: 111 FEDLIIAMM---TPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREY 167
D +A++ PLF A +L+ +M G GT+++TL I+ + S D+ IR + +Y
Sbjct: 585 VRDAFVAIVQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEIDLLNIRREFIEKY 644
Query: 168 NSSLERDLAGETSGNFKRLLVSISQG 193
+ SL + + G+TSG+F + L+++ G
Sbjct: 645 DKSLHQAIEGDTSGDFLKALLALCGG 670
Score = 68.9 bits (168), Expect = 5e-13
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
P A+ L K+MKG GTD+K + ++ +R+ I F Y K L + ++ + SG
Sbjct: 600 PLFFADKLYKSMKGAGTDDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGD 659
Query: 111 FEDLIIAMM 119
F ++A+
Sbjct: 660 FLKALLALC 668
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 294 bits (755), Expect = 3e-99
Identities = 80/297 (26%), Positives = 127/297 (42%), Gaps = 19/297 (6%)
Query: 43 VVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKD 102
VP D E LRKA G+GT+E II +L R QR I + YG+DL+K
Sbjct: 10 TVPTTVPSVSEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKA 69
Query: 103 LKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHA 162
L ELS FE L++ A + A ++ + L+EI CT S + R A
Sbjct: 70 LDKELSNDFERLVLLWALDPAERDALLANEATKRWTSSNQVLMEIACTRSANQLLHARQA 129
Query: 163 YEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVPILHRVI 222
Y Y SLE D+A T+G+F +LL+ + + R + + + +LH I
Sbjct: 130 YHARYKKSLEEDVAHHTTGDFHKLLLPLVSSY-----RYEGEEVNMTLAKTEAKLLHEKI 184
Query: 223 KP--------------RSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVV 268
RS Q+ + Y G+++++ + + + L + K +
Sbjct: 185 SNKAYSDDDVIRVLATRSKAQINATLNHYKNEYGNDINKDLKADPKDEFLALLRSTVKCL 244
Query: 269 LNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
+ YF + LR ++ GT + AL R+V R+E+D+ I Y + I
Sbjct: 245 VYPEKYFEKVLRLAINRRGTDEGALTRVVCTRAEVDLKVIADEYQRRNSVPLTRAIV 301
Score = 156 bits (395), Expect = 2e-45
Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 12/232 (5%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
ERDA + +A K + + + ++ + R+ Q + Y K L +D+ +G
Sbjct: 90 AERDALLANEATKRWTSSNQVLMEIACTRSANQLLHARQAYHARYKKSLEEDVAHHTTGD 149
Query: 111 FEDLIIAMMTPTPL-----------FLARELHHAMDGIGTNEETLVEILCTASNADIHAI 159
F L++ +++ A+ LH + +++ ++ +L T S A I+A
Sbjct: 150 FHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAYSDDDVIRVLATRSKAQINAT 209
Query: 160 RHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR-ADILHLITSHTNNMVPIL 218
+ Y+ EY + + +DL + F LL S + ++ +L L + L
Sbjct: 210 LNHYKNEYGNDINKDLKADPKDEFLALLRSTVKCLVYPEKYFEKVLRLAINRRGTDEGAL 269
Query: 219 HRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVLN 270
RV+ R+ L + +Y L AI ++ GD ++ L+ + V N
Sbjct: 270 TRVVCTRAEVDLKVIADEYQRRNSVPLTRAIVKDTHGDYEKLLLVLAGHVEN 321
Score = 130 bits (327), Expect = 2e-35
Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 10/224 (4%)
Query: 109 GKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYN 168
L + P+ +L A G GTNE +++IL + + IR Y Y
Sbjct: 4 HHHATLTVPTTVPSVSEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYG 63
Query: 169 SSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVPILHRVIKPRSYP 228
L + L E S +F+RL++ + A + + T + +L + RS
Sbjct: 64 EDLLKALDKELSNDFERLVLLWALDPAE--RDALLANEATKRWTSSNQVLMEIACTRSAN 121
Query: 229 QLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFK--------VVLNKPGYFAQQLR 280
QL Y+ L+E + +GD + L+ + V + A+ L
Sbjct: 122 QLLHARQAYHARYKKSLEEDVAHHTTGDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLH 181
Query: 281 GSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADI 324
+ D +IR++ RS+ + Y + + D+
Sbjct: 182 EKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEYGNDINKDL 225
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 265 bits (678), Expect = 2e-87
Identities = 51/299 (17%), Positives = 104/299 (34%), Gaps = 20/299 (6%)
Query: 44 VPAHPFDPERDAE-ILRKAMKGFGTDEKA--IISVLAARTNAQRQEIATRFKTLYGKDLI 100
+ + +++K ++ + K +I + + Q + + F+ + G L
Sbjct: 1 MANKNYQMSTGVTAVVQKVVEACQDESKRLDLIEIARSYPPNQLRNMQRTFQAITGTFLD 60
Query: 101 KDLKSELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIR 160
LK LS FE L++ + P L + A G GT+E+ LV++L T ++ IR
Sbjct: 61 AFLKKHLSKDFESLVLMLYKPRAQLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIR 120
Query: 161 HAYEREYNSSLERDLAGETSGNF--KRLLVSISQGHI------HLNSRADILH-----LI 207
Y + YN SL + + + +L+ +++ G L ++
Sbjct: 121 QLYYQLYNDSLGDVVRKDCGDKYMWAKLINAVATGDRIPRDTHELEEDLVLVRKAIETKG 180
Query: 208 TSHTNNMVPILHRVIKPRSYPQLAEVFSQYYT-LTGHELDEAIGREFSGDIKEGLIAIFK 266
I R+ + ++ Y G L + EF G +
Sbjct: 181 VKKDEVSTWI--RIFATYTRADFRQLHKMYSAKYNGDSLRAGVEDEFQGLDEYAFKLAHD 238
Query: 267 VVLNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
+ + A + + G G+ L RI + K Y +++ + +
Sbjct: 239 FLYDPCCAAAFSMNVAFAGSGSDSNRLNRITAMHFR-ECKGCKYYYKKVYGQAFDERCA 296
Score = 149 bits (377), Expect = 1e-42
Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 16/240 (6%)
Query: 52 ERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGKF 111
+ E++R A KG GTDEK ++ VL + +EI + LY L ++ + K+
Sbjct: 84 QLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVVRKDCGDKY 143
Query: 112 EDLIIAMMTPTPL----------FLARELHHAMDGI---GTNEETLVEILCTASNADIHA 158
+ T + A++ T + I T + AD
Sbjct: 144 MWAKLINAVATGDRIPRDTHELEEDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQ 203
Query: 159 IRHAYEREYN-SSLERDLAGETSGNFKRLLVSISQG-HIHLNSRADILHLITSHTNNMVP 216
+ Y +YN SL + E G + + + A +++ + + +
Sbjct: 204 LHKMYSAKYNGDSLRAGVEDEFQGLDEYAFKLAHDFLYDPCCAAAFSMNVAFAGSGSDSN 263
Query: 217 ILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVLNKPGYFA 276
L+R+ + Y + G DE E G + + +++ V
Sbjct: 264 RLNRITAMHF-RECKGCKYYYKKVYGQAFDERCATELKGVYGDAIKLLWEPVTVPLLSMD 322
Score = 110 bits (276), Expect = 6e-28
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 8/150 (5%)
Query: 48 PFDPERDAEILRKAMKGF---GTDEKAIISVLAARTNAQRQEIATRFKTLY-GKDLIKDL 103
+ E D ++RKA++ + I + A T A +++ + Y G L +
Sbjct: 162 THELEEDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGV 221
Query: 104 KSELSGKFEDL---IIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIR 160
+ E G E + A ++ A G G++ L I + +
Sbjct: 222 EDEFQGLDEYAFKLAHDFLYDPCCAAAFSMNVAFAGSGSDSNRLNRITAMHFR-ECKGCK 280
Query: 161 HAYEREYNSSLERDLAGETSGNFKRLLVSI 190
+ Y++ Y + + A E G + + +
Sbjct: 281 YYYKKVYGQAFDERCATELKGVYGDAIKLL 310
Score = 70.4 bits (172), Expect = 6e-14
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
A + A G G+D + + A + + +K +YG+ + +EL G
Sbjct: 244 CCAAAFSMNVAFAGSGSDSNRLNRITAMHFR-ECKGCKYYYKKVYGQAFDERCATELKGV 302
Query: 111 FEDLIIAMMTPTPLFLARELHHAMDGIGTNEE 142
+ D I + P L D G+ +
Sbjct: 303 YGDAIKLLWEPV----TVPLLSMDDYQGSEQH 330
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 261 bits (669), Expect = 2e-86
Identities = 38/281 (13%), Positives = 95/281 (33%), Gaps = 12/281 (4%)
Query: 50 DPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSEL-S 108
++ ++ +E+ +++ + + +R+E+ T+F+ G + I LK + +
Sbjct: 5 SYGDAIPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKN 62
Query: 109 GKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYN 168
G +ED++ + AM + + +++ A+ + + AY+ +
Sbjct: 63 GPYEDVMALGWDCNISARVNVIKKAMKN-VNDFRAIHDVVLIATPDERLKLAQAYKEKTG 121
Query: 169 SSLERDLAGE--TSGNFKRLLVSISQGHIHLNSRAD-----ILHLITSHTNNMVPILHRV 221
+ L +D + + L + + + H + + R+
Sbjct: 122 NDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRL 181
Query: 222 IKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSG-DIKEGLIAIFKVVLNKPGYFAQQLR 280
I + + E+ ++ LTG + EAI ++ + GL L A
Sbjct: 182 IITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAHYYNLAPARAVAYAFH 241
Query: 281 GSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVE 321
+VE D+ V+ + +
Sbjct: 242 SAVETQNDDMAYEQAARITGLFHDLHKFAWVHYACWGVMRD 282
Score = 133 bits (335), Expect = 1e-36
Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 18/234 (7%)
Query: 50 DPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSG 109
+ +++KAMK D +AI V+ T +R ++A +K G DL++D ++
Sbjct: 76 NISARVNVIKKAMKN-VNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPL 134
Query: 110 K--FEDLIIAMMT------PTPLFLARELHHAM-DGIGTNEETLVEILCTASNADIHAIR 160
L + + A L H + D + E +V ++ T++ + I
Sbjct: 135 TSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEIN 194
Query: 161 HAYEREYNSSLERDLAGETSGN-FKRLLVSISQGHIHLNSR----ADILHLITSHTNNMV 215
H +E S++ + + R L H + + A H N+ +
Sbjct: 195 HRFEVLTGKSVQEAIETRYADKENARGLCIA---HYYNLAPARAVAYAFHSAVETQNDDM 251
Query: 216 PILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVL 269
+ L + +Y G D+ + R S + + ++
Sbjct: 252 AYEQAARITGLFHDLHKFAWVHYACWGVMRDDILSRFQSKEANKVNFRDACLMF 305
Score = 108 bits (272), Expect = 1e-27
Identities = 28/213 (13%), Positives = 74/213 (34%), Gaps = 14/213 (6%)
Query: 121 PTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGE-T 179
+ E+ ++ NEE LV S + +R ++ L
Sbjct: 4 GSYGDAIPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIK 61
Query: 180 SGNFKRLLVSISQGHIHLNSRADILH-LITSHTNNMVPILHRVIKPRSYPQLAEVFSQYY 238
+G ++ ++ +I R +++ + + + +H V+ + + ++ Y
Sbjct: 62 NGPYEDVMALGWDCNISA--RVNVIKKAMKNVNDFRA--IHDVVLIATPDERLKLAQAYK 117
Query: 239 TLTGHELDEAIGREFSGD-----IKEGLIAIFKVVLNKPGYFAQQLRGSVEG-MGTHDRA 292
TG++L + + + I + A+ L+ ++ A
Sbjct: 118 EKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEA 177
Query: 293 LIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
++R++ + + +I + + SV+ IE
Sbjct: 178 VVRLIITSTADEYKEINHRFEVLTGKSVQEAIE 210
Score = 32.5 bits (74), Expect = 0.16
Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 269 LNKPGYFAQQLRGSVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIELAW 328
L G +++ +E ++ L+ + S + +++ + + A ++
Sbjct: 3 LGSYGDAIPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCI 60
Query: 329 NVGN 332
G
Sbjct: 61 KNGP 64
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 260 bits (667), Expect = 3e-86
Identities = 51/284 (17%), Positives = 91/284 (32%), Gaps = 17/284 (5%)
Query: 50 DPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSG 109
A L++A+ DE I + + + R++IA + YGK+L D+K L G
Sbjct: 3 KVTDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKG 60
Query: 110 K-FEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYN 168
E L++ + + A+ + A+ G + + + + D H AY R +
Sbjct: 61 GSEESLLMDLFSDRHEVRAQHIRDALSG-RNDHMAFFDTVILCTPEDWHETVAAYTRMFK 119
Query: 169 SSLERDLAGETSGNFKRLLVSISQGHIHLNSR-------ADILHLITSHTNNMVPILHRV 221
L D + L+ SR A L N L
Sbjct: 120 KPLVEDFMKDVGRKEDWCLLMEKWMAHERVSRPGSPEDEAQRLDQAFDQKNTAY--LIDF 177
Query: 222 IKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKVVLNKPGYFAQQLRG 281
+ + + G +++AI ++ +L A +
Sbjct: 178 FGTVPSAEYRPIAEAFKAQNGKSIEQAIATIYTKTDYYTFYCAHFALLGMHRLAAYLINC 237
Query: 282 SVEGMGTHDRALIRIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
+ G R + RI + L K Y + + DIE
Sbjct: 238 ACNDKGDEKR-MRRITGMMVD-KCLGAKHAYKI--YGDMGTDIE 277
Score = 137 bits (347), Expect = 2e-38
Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 23/231 (9%)
Query: 50 DPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSG 109
E A+ +R A+ G D A + T E + ++ K L++D ++
Sbjct: 74 RHEVRAQHIRDALSG-RNDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVEDFMKDVGR 132
Query: 110 KFEDLIIAMMTPT---------PLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIR 160
K + ++ P A+ L A D N L++ T +A+ I
Sbjct: 133 KEDWCLLMEKWMAHERVSRPGSPEDEAQRLDQAFDQ--KNTAYLIDFFGTVPSAEYRPIA 190
Query: 161 HAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSR----ADILHLITSHTNNMVP 216
A++ + S+E+ +A + H L A +++ + +
Sbjct: 191 EAFKAQNGKSIEQAIATIYTKTDYYTFYCA---HFALLGMHRLAAYLINCACNDKGD-EK 246
Query: 217 ILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFKV 267
+ R+ Y + G ++ I R F + L +++V
Sbjct: 247 RMRRIT--GMMVDKCLGAKHAYKIYG-DMGTDIERCFDKRMAPILRTLWRV 294
Score = 105 bits (264), Expect = 1e-26
Identities = 35/211 (16%), Positives = 61/211 (28%), Gaps = 12/211 (5%)
Query: 121 PTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGETS 180
P +A EL A+D +E + I S I AY Y L D+
Sbjct: 2 PKVTDIANELKQAID--AKDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALK 59
Query: 181 GNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVPILHRVIKPRSYPQLAEVFSQYYTL 240
G + L+ H I ++ ++M + + E + Y +
Sbjct: 60 GGSEESLLMDLFSDRHEVRAQHIRDALSGRNDHMA--FFDTVILCTPEDWHETVAAYTRM 117
Query: 241 TGHELDEAIGREFSGDIKEGLIAIFK------VVLNKPGYFAQQLRGSVEGMGTHDRALI 294
L E ++ L+ P AQ+L + + + LI
Sbjct: 118 FKKPLVEDFMKDVGRKEDWCLLMEKWMAHERVSRPGSPEDEAQRLDQAFD--QKNTAYLI 175
Query: 295 RIVTWRSEIDMLDIKKVYGEMFHTSVEADIE 325
+ I + + S+E I
Sbjct: 176 DFFGTVPSAEYRPIAEAFKAQNGKSIEQAIA 206
Score = 104 bits (260), Expect = 5e-26
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 9/146 (6%)
Query: 48 PFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSEL 107
P PE +A+ L +A + +I +A+ + IA FK GK + + + +
Sbjct: 152 PGSPEDEAQRLDQAFD--QKNTAYLIDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIATIY 209
Query: 108 SGKFED---LIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNADIHAIRHAYE 164
+ + A ++ A + G E+ + I + +HAY+
Sbjct: 210 TKTDYYTFYCAHFALLGMHRLAAYLINCACNDKGD-EKRMRRITGMMVDKC-LGAKHAYK 267
Query: 165 REYNSSLERDLAGETSGNFKRLLVSI 190
Y + D+ +L ++
Sbjct: 268 I-YG-DMGTDIERCFDKRMAPILRTL 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 6e-09
Identities = 55/350 (15%), Positives = 103/350 (29%), Gaps = 105/350 (30%)
Query: 11 FLATQ----FIACLVIARSRIRFPPGPDFPYPGRPSVVP----------AHPFDPERDA- 55
F+A+Q F L P F P+ + +P +
Sbjct: 28 FIASQLQEQFNKILP--------EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 56 --EILRKAMKGF------GTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKD-LKSE 106
++L + F G D I ++ A + K+LIK+ + +
Sbjct: 80 FDQVLNLCLTEFENCYLEGND---IHALAAKLLQENDTTLVKT------KELIKNYITAR 130
Query: 107 LSGKFEDLIIAMMTPTPLFLARELHHA-----MDGIGTNEETLVEILCTASNADIHAIRH 161
+ K + + LF A +A G G ++ E+ R
Sbjct: 131 IMAKRP---FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL------------RD 175
Query: 162 AYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVPILHRV 221
Y+ Y+ + DL ++ L+ + +IL +
Sbjct: 176 LYQT-YHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE------------- 220
Query: 222 IKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGD-IKEGLIAI--FKVVLNKPGYFAQQ 278
P + P + Y L S I G+I + + V G+ +
Sbjct: 221 -NPSNTP------DKDY------LLSI---PISCPLI--GVIQLAHYVVTAKLLGFTPGE 262
Query: 279 LRGSVEGMGTHDRALI--RIV----TWRSEIDMLDIKKVYGEMFHTSVEA 322
LR ++G H + L+ + +W S ++K +F V
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVS--VRKAITVLFFIGVRC 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 2e-07
Identities = 60/377 (15%), Positives = 108/377 (28%), Gaps = 112/377 (29%)
Query: 5 CL-------SSKIFLATQF-IAC--LVIARSRIRFPPGPDFPYPGRPSVVP----AHPFD 50
CL ++K + A F ++C L+ R + DF + + +
Sbjct: 246 CLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVT----DFLSAATTTHISLDHHSMTLT 299
Query: 51 PERDAEILRKAMKGFGTDEKAI-----------ISVLAARTNAQRQEIAT--RFKTLYGK 97
P+ +L K + + + +S++A R +AT +K +
Sbjct: 300 PDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNWKHVNCD 353
Query: 98 DLIKDLKS--------ELSGKFEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEIL- 148
L ++S E F+ L + F L ++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV--------F--------PPSAHIPTILL-SLIW 396
Query: 149 CTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHIHLNSRADILHLIT 208
+D+ + + + S +E+ T I I +
Sbjct: 397 FDVIKSDVMVVVNKLHKY--SLVEKQPKESTI-------------SIP-----SIYLELK 436
Query: 209 SHTNNMVPILHRVI-----KPRSYPQ---LAEVFSQY-YTLTGHELDEA-IGREFSG--- 255
N LHR I P+++ + QY Y+ GH L +
Sbjct: 437 VKLENE-YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 256 ---DIK--EGLIAIFKVVLNKPGYFA---QQLRGSVEGMGTHDRALIRIVTWRSEIDMLD 307
D + E I N G QQL+ + +D R+V +LD
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-----AILD 550
Query: 308 IKKVYGEMFHTSVEADI 324
E S D+
Sbjct: 551 FLPKIEENLICSKYTDL 567
Score = 41.8 bits (97), Expect = 2e-04
Identities = 44/357 (12%), Positives = 96/357 (26%), Gaps = 105/357 (29%)
Query: 11 FLATQFIACLVIARSRIRFPPGPDFPYPGRPSVV--PAHPFDP---ERDAEI--LRKA-- 61
FL + ++ R P Y + + F R LR+A
Sbjct: 93 FLMSPI-------KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 62 ------------MKGFGTDEKAIISVLAART-NAQRQEIATRFKTLY---GK-----DLI 100
+ G G K + +A + + + FK + ++
Sbjct: 146 ELRPAKNVLIDGVLGSG---K---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 101 K---DLKSELSGKFEDLIIAMMTP-----------TPLFLARELHHA---MDGIGTNEET 143
+ L ++ + L ++ + + + N +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKA 258
Query: 144 L------VEILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVS-------- 189
+IL T + A + SL+ T K LL+
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 190 ----ISQGH-IHLNSRADILHLITSHTNN----MVPILHRVIKPRSYPQL-AEVFSQYYT 239
+ + L+ A+ + + +N L +I+ S L + + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMF- 375
Query: 240 LTGHELDEAIGREFSGDIKEGLIAIF--KVVLNKPGYFAQQLRGSVEGMGTHDRALI 294
L ++ S I L+++ V+ + +L H +L+
Sbjct: 376 ---DRL--SVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKL---------HKYSLV 417
Score = 39.1 bits (90), Expect = 0.002
Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 55/229 (24%)
Query: 132 HAMDGIGTNEETLV-------EILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFK 184
+ G G + + ++ C I + + LE +
Sbjct: 156 DGVLGSG--KTWVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLE---------MLQ 203
Query: 185 RLLVSISQGHIHLNSRADILHLITSHTNNMVPILHRVIKPRSYPQ----LAEV------- 233
+LL I + SR+D I +++ L R++K + Y L V
Sbjct: 204 KLLYQIDP---NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 234 -F---------SQYYTLTGHELDEAIGREFSGDIKEGL-----IAIFKVVLNKPGYFAQQ 278
F +++ +T L ++ L+ Q
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQD 317
Query: 279 LRGSVEGMGTHDRALIRIVT-WRSEIDMLD-IKKVYGEMFHTSVEADIE 325
L E + T+ R L I R + D K V + T +E+ +
Sbjct: 318 LP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Score = 29.1 bits (64), Expect = 2.6
Identities = 27/205 (13%), Positives = 66/205 (32%), Gaps = 53/205 (25%)
Query: 51 PERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDLIKDLKSELSGK 110
P ++ + +D +++ L + ++Q + ++ + +LK +L +
Sbjct: 388 PTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTI-SIP--SIYLELKVKLENE 442
Query: 111 FE--DLIIAM-----------MTPTPL------FLARELHHAMDGIGTNEE-TLVEILCT 150
+ I+ + P L + HH + I E TL ++
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HH-LKNIEHPERMTLFRMVFL 498
Query: 151 ASNADIH----AIRHA-YEREYNSSLERDLA---------GETSGNFKRLLVSI------ 190
D IRH + S+ L + ++RL+ +I
Sbjct: 499 ----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 191 SQGHIHLNSRADILHLITSHTNNMV 215
+ ++ + D+L + + +
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAI 579
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular
trafficking, vesicle tethering, multisubunit tethering
complex, exocyst; 1.90A {Homo sapiens}
Length = 263
Score = 30.3 bits (68), Expect = 0.64
Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 136 GIGTNEETLVEILCTASNADIHAIRHAYEREYNSSLERDLAGETSGNFKRLLVSISQGHI 195
GI + +E + L T +N ++ + E S+L++ L + + F + + Q
Sbjct: 11 GIESTDEAKMSFLVTLNNVEVCS-------ENISTLKKTLESDCTKLFSQGIGG-EQAQA 62
Query: 196 HLNSRADILHLITSHTNNMVP-----ILHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIG 250
+S L +++ +++ + IKP+ P + FS + + E ++
Sbjct: 63 KFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEA 122
Query: 251 RE-----FSGDIKEGLIAIFKVVLNKPGY 274
+ F ++ E +A FK L+ Y
Sbjct: 123 NDPWVQQFILNL-EQQMAEFKASLSPVIY 150
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 29.8 bits (68), Expect = 1.1
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 59 RKAMKGFGTDEKAIISVLA---ARTNAQRQEIATRFKTLYGKDLIKDLKSELSGKFE--D 113
F TD +S A AR NA+R ++ RF G + KF +
Sbjct: 144 FSDAIVFATD----VSSKAVEIARKNAERHGVSDRFFVRKG-----EFLEPFKEKFASIE 194
Query: 114 LIIA 117
+I++
Sbjct: 195 MILS 198
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc
knuckle protein, RNA surveillance binds to TRF4P/AIR2P
heterodimer; 2.70A {Saccharomyces cerevisiae}
Length = 323
Score = 28.9 bits (64), Expect = 2.3
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 177 GETSGNFKRLLVSISQGHIHLNSRADILHLITSHTNNMVPILHRVIK 223
S N + + + + L +R LH T IL VIK
Sbjct: 276 SRGSFNIRDIKKAFAGAFDLLTNRCFELHSATFKDRLGKSILGNVIK 322
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 28.7 bits (65), Expect = 2.5
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 37 YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRF 91
YP PS HP ++ ++ M G G +++ ++ A
Sbjct: 306 YPYLPS----HP-----QYDLAKRQMSGGG----TVVTFALDCPEDVAKQRAFEV 347
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 28.7 bits (65), Expect = 2.6
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 218 LHRVIKPRSYPQLAEVFSQYYTLTGHELDEAIGREFSGDIKEGLIAIFK------VVLNK 271
L +V+K + + EVF ++Y + + I L A+ VV NK
Sbjct: 54 LEKVLKDKFREEYVEVFRKHYLENPVVY----TKPYPE-IPYTLEALKSKGFKLAVVSNK 108
Query: 272 PGYFAQQLRGSVEGMGTHDR 291
++++ ++ +
Sbjct: 109 LEELSKKI---LDILNLSGY 125
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant;
winged helix domain, RNA polymerase III C39 subunit,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 27.1 bits (60), Expect = 2.7
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 52 ERDAEILRKAMKGFGTDEKAIISV-------------LAARTNAQRQEIATRFKTLYGKD 98
+D++ K MKG EK + + + ++N EI K L K
Sbjct: 23 IKDSQNAGK-MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKK 81
Query: 99 LIKDLKS 105
LIK +KS
Sbjct: 82 LIKAVKS 88
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 28.3 bits (64), Expect = 3.1
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 59 RKAMKGFGTDEKAIISVLA---ARTNAQRQEIATRFKTLYGKDLIKDLKSELSGKFEDLI 115
K T+ + AR N +R R G +IK + G F D+I
Sbjct: 77 FFNCKVTATE----VDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVV---EGTF-DVI 127
Query: 116 IA 117
+
Sbjct: 128 FS 129
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 28.3 bits (64), Expect = 3.6
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 13/38 (34%)
Query: 37 YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIIS 74
YPG H +I +K M+ +G ++I+
Sbjct: 289 YPGFED----HE-----GHDIAKKQMRMYG----SMIT 313
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural
genomics, winged helix domain, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.5.85
Length = 91
Score = 26.7 bits (59), Expect = 4.2
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 60 KAMKGFGTDEKAIISV-------------LAARTNAQRQEIATRFKTLYGKDLIKDLKS 105
MKG EK + + + ++N EI K L K LIK +KS
Sbjct: 13 GKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKS 71
>2d37_A Hypothetical NADH-dependent FMN oxidoreductase; flavin reductase;
HET: FMN NAD; 1.70A {Sulfolobus tokodaii} PDB: 2d36_A*
2d38_A*
Length = 176
Score = 27.6 bits (62), Expect = 4.4
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 31 PGPDFPYPGRPSVVPAHPFDPERDAEILRKAMKGFGT 67
+ +VP E ++ M+ F
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAEV----IKSIMRKFPL 34
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 27.9 bits (63), Expect = 4.8
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 13/39 (33%)
Query: 37 YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISV 75
YPG S HP E+ ++ M G IIS
Sbjct: 290 YPGLSS----HP-----QYELGQRQMSLPG----GIISF 315
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 27.9 bits (63), Expect = 4.9
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 13/39 (33%)
Query: 37 YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISV 75
YPG S P + R+ M G +I+
Sbjct: 291 YPGLAS----FP-----QYTLARQQMSQPG----GMIAF 316
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha
sandwich, structural genomics, PSI-2, protein structure
initiative; 2.60A {Bacteroides thetaiotaomicron}
Length = 217
Score = 27.4 bits (61), Expect = 5.3
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVL 76
R V+ P E++R +K + D ++ V+
Sbjct: 171 REGVMKKEIVSPAYQGEVIRHDVKKYVADTDYVVKVI 207
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain,
ATP-binding, cell cycle, cell division, DNA damage, DNA
recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Length = 558
Score = 27.7 bits (62), Expect = 5.5
Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 22/128 (17%)
Query: 57 ILRKAM-KGFGTDEKAIISVL---------AARTNAQRQEIATRFKTLYGKDLIKDLK-- 104
+L +A+ G I S++ A + +++ F+ L + + +
Sbjct: 68 LLYEALENVSGVKRSEIESMIREYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRETFDEI 127
Query: 105 SELSGK---------FEDLIIAMMTPTPLFLARELHHAMDGIGTNEETLVEILCTASNAD 155
+ L+G+ L +L R + + M +G E + + + A AD
Sbjct: 128 ASLTGEGSMKRKIMLLTGLYGLATPLEARYLTRLILNEMR-LGVGEGIMRDAIARAFRAD 186
Query: 156 IHAIRHAY 163
+ AY
Sbjct: 187 PETVERAY 194
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription
regulator complex, oxidoreductase/repressor complex,
histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens}
SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B*
2x0l_B*
Length = 235
Score = 27.4 bits (59), Expect = 6.1
Identities = 9/63 (14%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 52 ERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKD-LIKDLKSELSGK 110
+ + +A++ +G D +AI V+ ++ Q + ++ + D ++++ ++E +
Sbjct: 138 TEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKE 197
Query: 111 FED 113
+
Sbjct: 198 ETN 200
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome;
HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A
3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A*
1ekm_A 1a2v_A*
Length = 692
Score = 27.6 bits (60), Expect = 6.9
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 36 PYPGRPSVVPAHPFDPERDAEI 57
PAHP DP AEI
Sbjct: 12 TAASAAPARPAHPLDPLSTAEI 33
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP:
a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M
1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P*
1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M*
1xmq_M* ...
Length = 126
Score = 26.3 bits (59), Expect = 7.5
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 152 SNADIHAIRHAYEREYNSSLERDLAGETSGNFKRL 186
+ A++ +R E + LE +L E + N KRL
Sbjct: 49 TEAEVVRLREYVENTW--KLEGELRAEVAANIKRL 81
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA
repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Length = 225
Score = 26.9 bits (60), Expect = 8.2
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 15/59 (25%)
Query: 43 VVPAHPFDPERDAEILRKAMKGFGTDEKAI----ISVLAARTNAQRQEIATRFKTLYGK 97
V + +L FG +++ +SV AA+ I R + L G
Sbjct: 45 VTSLCG-----ELPVLAPTPDPFGRLVRSVAGQQLSVKAAQA------IYGRLEGLPGG 92
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Length = 437
Score = 27.2 bits (59), Expect = 8.5
Identities = 15/61 (24%), Positives = 23/61 (37%)
Query: 40 RPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISVLAARTNAQRQEIATRFKTLYGKDL 99
+ PF E L+ +G + +V AA ++ IA +TL GK L
Sbjct: 251 AKRIAAPFPFGEEGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKAIAAHLETLTGKSL 310
Query: 100 I 100
Sbjct: 311 F 311
>3e0s_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.09A
{Chlorobaculum tepidum}
Length = 326
Score = 27.0 bits (59), Expect = 8.5
Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 19/191 (9%)
Query: 14 TQFIACLVIARSRIRFPPGPDFPYPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAII 73
+ F+ L + P P P+ A + + + + G++ +
Sbjct: 144 SGFMTSLKEFIAEGELPDPETAPLAAEPTGDVA-AKTIRKALKKVLVHGRRTGSET-SDA 201
Query: 74 SVLAARTNAQRQE-IATRFKTLYG----KDLIKDLKS--ELSGKFEDLIIAMMTPTPLFL 126
+ R + ++ + F +L+ +++ +K+ + G F DL +
Sbjct: 202 ELHELRIDCKKLRYLLEFFASLFPPKATAQVLRQMKTLQDNLGTFVDLTVQ--------- 252
Query: 127 ARELHHAMDGIGTNEETLVEILCTAS-NADIHAIRHAYEREYNSSLERDLAGETSGNFKR 185
L ++ I + + E ++ R ++ + ET F
Sbjct: 253 MEFLQSRLETIPADRGGISEAAAIGGLLTTLYRKREKVREHFHEIFSGFDSNETGELFDE 312
Query: 186 LLVSISQGHIH 196
LL +++GH H
Sbjct: 313 LLTGLAEGHHH 323
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 27.2 bits (61), Expect = 9.2
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 13/39 (33%)
Query: 37 YPGRPSVVPAHPFDPERDAEILRKAMKGFGTDEKAIISV 75
YPG S HP + I +K M GFG +S
Sbjct: 339 YPGLQS----HP-----EHHIAKKQMTGFG----GAVSF 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,359,693
Number of extensions: 342454
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 92
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)