BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4805
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 226 bits (576), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 105/159 (66%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
Query: 1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
M CGSCSNENA+K IF+WY++K+RG S F+KEE E+ MINQAPG P+ SILSF GAFHG
Sbjct: 133 MACGSCSNENAFKTIFMWYRSKERG-QSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 191
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL CL EVEDLI K
Sbjct: 192 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 251
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
Y KK VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 252 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 290
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
G+ + ENA K F W S NQA G A +L +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
R+ LS T++K P FDWP P + L A
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ + +A V EPIQ EGGD H FF ++++
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMREL 260
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
G+ + ENA K F W S NQA G A +L +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
R+ LS T++K P FDWP P + L A
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ + +A V EPIQ EGGD H FF ++++
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMREL 260
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
G+ + ENA K F W S NQA G A +L +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
R+ LS T++K P FDWP P + L A
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ + +A V EPIQ EGGD H FF ++++
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMREL 260
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 59/156 (37%), Gaps = 26/156 (16%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
G+ + ENA K F W S NQA G A +L +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
R+ LS T++K P FDWP P + L A
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ + +A V EPIQ GGD H FF ++++
Sbjct: 225 FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMREL 260
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFP---KYKYPLXXXXXXXXXXX 107
I++F G FHGRT G +S T SK + + + F + P Y+ P
Sbjct: 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL 191
Query: 108 XXCLAE-VEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+ E +ED I VAGI EPIQ EGG FF +LQK+ KK
Sbjct: 192 VNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKK 244
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 24/108 (22%)
Query: 52 LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
+SF+ +FHGRT G LS T HK F+ P+ P + Y
Sbjct: 121 ISFENSFHGRTYGSLSATGQPKFHK----GFE-PLV--PGFSY----------------- 156
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
A++ D+ + Y AGI++E IQ EGG N S F +LQ+I K+
Sbjct: 157 AKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE 204
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 24/105 (22%)
Query: 52 LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
++FK +FHGRTLG LS T ++ KY+ P +
Sbjct: 128 IAFKHSFHGRTLGALSLTANE------------------KYQKPFKPLISGVKFAKYNDI 169
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ VE L+ + I++E +Q EGG N + F++ L+K+
Sbjct: 170 SSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKL 208
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 24/106 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXC 110
I++FK AFHGRTL +S PA+ A P
Sbjct: 131 IVAFKNAFHGRTLFTVSAGGQ--------PAYSQDFAPLPA----------------DIR 166
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
A D+ + ++VEPIQ EGG SN F Q L+++
Sbjct: 167 HAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLREL 212
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXC 110
ILS +FHGRTLG L+ T K F+ + F +++
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQK----PFEPLVPGFEYFEF---------------- 158
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
VEDL K ++ V + +EPIQ E G + F ++ +K+
Sbjct: 159 -NNVEDLRRKMSED---VCAVFLEPIQGESGIVPATKEFLEEARKL 200
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 52 LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
++F GA+HGRT L+ T + + + P + Y +
Sbjct: 132 IAFSGAYHGRTHYTLALTGK-------VNPYSAGMGLMPGHVYRALYPCPLHGISEDDAI 184
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
A + I K + +A IV+EP+Q EGG S F Q+L+ +
Sbjct: 185 ASIHR-IFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRAL 228
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 52 LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
++F GA+HGRT L+ T + + + P + Y +
Sbjct: 132 IAFSGAYHGRTHYTLALTGK-------VNPYSAGMGLMPGHVYRALYPCPLHGISEDDAI 184
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
A + I K + +A IV+EP+Q EGG S F Q+L+ +
Sbjct: 185 ASIHR-IFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRAL 228
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 52 LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
++F GA+HGRT L+ T + + + P + Y +
Sbjct: 132 IAFSGAYHGRTHYTLALTGK-------VNPYSAGMGLMPGHVYRALYPCPLHGISEDDAI 184
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
A + I K + +A IV+EP+Q EGG S F Q+L+ +
Sbjct: 185 ASIHR-IFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRAL 228
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXC 110
ILS +FHGRTLG L+ T K F+ + F +++
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQK----PFEPLVPGFEYFEF---------------- 170
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
VEDL K ++ V + +EPIQ E G + F ++ +K+
Sbjct: 171 -NNVEDLRRKXSED---VCAVFLEPIQGESGIVPATKEFLEEARKL 212
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXX 109
++++F A+HGRT ++ T +K + F + P YP
Sbjct: 153 AVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMP-MSYPFREENPEITGAEAA 211
Query: 110 CLAEVEDLITKYNKK--GTPVAGIVVEPIQSEGG 141
A IT K+ G VA I++EPIQ EGG
Sbjct: 212 KRA-----ITMIEKQIGGDQVAAIIIEPIQGEGG 240
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 52 LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
++F GA+HGRT L+ T + + + P + Y +
Sbjct: 132 IAFSGAYHGRTHYTLALTGK-------VNPYSAGMGLMPGHVYRALYPCPLHGISEDDAI 184
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
A + I K + +A IV+EP+Q GG S F Q+L+ +
Sbjct: 185 ASIHR-IFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRAL 228
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 28 SGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIA 87
SG E + A G P ++++F A+HGRT ++ T +K F +
Sbjct: 133 SGAEAVENAIKVARLATGRP--AVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVY 190
Query: 88 SFPKYKYPLXXX-XXXXXXXXXXCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
P YPL ++ +E I + +A I++EPIQ EGG
Sbjct: 191 RMPA-SYPLRDEPGLTGEEAARRAISRIETQIGAQS-----LAAIIIEPIQGEGG 239
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 23 QRGGASGFTKEEQESSM--INQAPGAPNLS-ILSFKGAFHGRTLGCLSTTHSKYIHKIDI 79
+RGG F E++M I A G IL F G +HG L S H
Sbjct: 110 KRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAH---- 165
Query: 80 PAFDWPI-ASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITKYNKKGTPVAGIVVEPIQS 138
+ P A P+ L +VE L + + G +AG++VEP+ +
Sbjct: 166 --YGVPTSAGVPEAVARLTLVTPYN---------DVEALERVFAEYGDRIAGVIVEPVIA 214
Query: 139 EGGDNHGSNYFFQQLQKIGKK 159
G F LQ++ ++
Sbjct: 215 NAGVIPPRREFLAALQRLSRE 235
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXX 109
++++F A+HGRT ++ T +K F I P YP
Sbjct: 150 AVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAP-LSYPFRDAEFGKELATDG 208
Query: 110 CLAEVEDLITKYNKK--GTPVAGIVVEPIQSEGG 141
LA + IT +K+ +A +V+EPIQ EGG
Sbjct: 209 ELA-AKRAITVIDKQIGADNLAAVVIEPIQGEGG 241
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXX 109
+++ F A+HGRT ++ T +K F + P YP
Sbjct: 157 AVVVFDHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPT-SYPFRDGETDGAAAAAH 215
Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQK 155
L DLI K VA +V+EP+ EGG + F LQK
Sbjct: 216 AL----DLINK-QVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQK 256
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXX 109
++++F A+HGRT ++ T +K F I P YP
Sbjct: 167 AVVAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAP-VSYPYRDNLLDKDIATDG 225
Query: 110 CLAEVEDLITKYNKK--GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQK 155
LA E I +K+ +A +++EPI EGG ++ F LQ+
Sbjct: 226 ELA-AERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQR 272
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 25/106 (23%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXC 110
+ + +G F GRT+G LS T W PKY+ P
Sbjct: 134 VAAMRG-FSGRTMGSLSVT--------------WE----PKYREPFLPLVEPVEFIPYN- 173
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+VE L +++ A +++EP+Q EGG + F + ++I
Sbjct: 174 --DVEALKRAVDEE---TAAVILEPVQGEGGVRPATPEFLRAAREI 214
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 25/110 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXC 110
I+ K F GRTLGC+S + +K F F K Y
Sbjct: 159 IVVCKNNFSGRTLGCISASTTKKCTS----NFGPFAPQFSKVPY---------------- 198
Query: 111 LAEVEDLITKYNKKGTP-VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+DL + P V +VEPIQ E G S+ + Q + I KK
Sbjct: 199 ----DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK 244
>pdb|3T1I|A Chain A, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|B Chain B, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|C Chain C, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|D Chain D, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
Length = 431
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 8 NENAYKNIFIWYQNKQRGGASGFTKEEQESSMIN 41
+EN++ N+F+ +QN+ + G++ F E+ I+
Sbjct: 226 DENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFID 259
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 40 INQAPGAPN-LSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXX 98
++ A G P IL+ A+HG T S T Y +P + + P Y +
Sbjct: 143 LHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFIHLTCPHY-WRYGE 201
Query: 99 XXXXXXXXXXXCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK 158
E+ED IT+ + +AG EP+ GG + +FQ + I +
Sbjct: 202 EGETEAQFVARLARELEDTITR--EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR 259
Query: 159 K 159
K
Sbjct: 260 K 260
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 45 GAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFP 90
GA + L+ G FH + + S YI++ F+W A FP
Sbjct: 193 GAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQ-----FEWRDAKFP 233
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 42 QAPGAPNLSILSFKGAFHGRTLGCLST 68
QA G L+F+ FHG T G +S
Sbjct: 128 QAKGEARQRFLTFRNGFHGDTFGAMSV 154
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 58 FHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDL 117
+HG T+G S KY+H+ D PI + P + L
Sbjct: 153 YHGSTIGGASLGGMKYMHE----QGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWL 208
Query: 118 ITKYNKKGTP-VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
K + G VA V EPIQ GG ++ ++++I +K
Sbjct: 209 EEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRK 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,760,381
Number of Sequences: 62578
Number of extensions: 169383
Number of successful extensions: 503
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 31
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)