RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4805
(159 letters)
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 267 bits (684), Expect = 2e-89
Identities = 101/159 (63%), Positives = 124/159 (77%), Gaps = 3/159 (1%)
Query: 1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
M GS +NE A+K F++Y++KQRG + F++EE ES M NQAPG+P+LSILSFKGAFHG
Sbjct: 128 GMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHG 187
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
R G LSTT SK IHK+DIPAFDWP A FP KYPLEE+ +EN E+++CL EVEDLI K
Sbjct: 188 RLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK 247
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
++K PVA I+VEPIQSEGGDNH S FF++L+ I KK
Sbjct: 248 WHK---PVAAIIVEPIQSEGGDNHASPDFFRKLRDITKK 283
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 110 bits (277), Expect = 7e-30
Identities = 49/159 (30%), Positives = 62/159 (38%), Gaps = 31/159 (19%)
Query: 1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
M GS +NE A K + + K G T + I++F G FHG
Sbjct: 82 MNSGSEANETAIKLARQYAKKK------GATGKT---------------KIIAFSGGFHG 120
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
RTLG LS T S K P+ YP E E A C E LI
Sbjct: 121 RTLGALSVTGSSGYKKGFGPSLPG----VYFLPYPDLEAAEEELA----CADEALRLIKA 172
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+ +A ++VEPIQ EGG F L++I KK
Sbjct: 173 VHDDN--IAAVIVEPIQGEGGVVPPPPGFLAGLREICKK 209
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 103 bits (260), Expect = 6e-27
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 39/160 (24%)
Query: 1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
+ G+ + E A K + K+ I+SF+GA+HG
Sbjct: 102 VNSGTEAVEAALKLARAYTGRKK---------------------------IISFEGAYHG 134
Query: 61 RTLGCLSTTHSK-YIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLIT 119
RTLG LS T SK Y +P P E L +E+ +
Sbjct: 135 RTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELAD--------DLEALEEALE 186
Query: 120 KYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
++ ++ VA ++VEPIQ EGG + + L+++ +K
Sbjct: 187 EHPEE---VAAVIVEPIQGEGGVIVPPPGYLKALRELCRK 223
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 103 bits (260), Expect = 7e-27
Identities = 32/109 (29%), Positives = 48/109 (44%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+++F GAFHGRTLG LS T SK +K + P + +
Sbjct: 146 VIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA 205
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
L +E + VA I++EPIQ EGG F + L+K+ ++
Sbjct: 206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCRE 254
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 90.6 bits (225), Expect = 4e-22
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPN---LSILSFKGAFHG 60
G+ + ENA K F W K R NQA G P +L + AFHG
Sbjct: 112 GALAVENALKTAFDW---KSR---------------HNQARGIPAALGTQVLHLRQAFHG 153
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENEREN-KAEDEKCLAEVEDLIT 119
R+ LS T++ P FDWP PK +PL+ + A +E+ L +
Sbjct: 154 RSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAF- 212
Query: 120 KYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
++ +A + EPIQ EGGDNH F + ++ +
Sbjct: 213 --AERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRAL 247
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 85.8 bits (213), Expect = 2e-20
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 9 ENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAP---NLSILSFKGAFHGRTLGC 65
ENA K F W K R N+A G +L +GAFHGR+
Sbjct: 124 ENALKVAFDW---KSR---------------KNEARGIDPALGTKVLHLRGAFHGRSGYT 165
Query: 66 LSTTHSKYIHKIDIPAFDWPIASFPKYKYPL-EENERENKAEDEKCLAEVEDLITKYNKK 124
LS T++ P FDWP PK ++PL E+ E +A + + LA+ ++
Sbjct: 166 LSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERH--- 222
Query: 125 GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+A + EPIQ EGGDNH FF ++++
Sbjct: 223 PHDIACFIAEPIQGEGGDNHFRPEFFAAMREL 254
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 66.9 bits (164), Expect = 1e-13
Identities = 42/125 (33%), Positives = 56/125 (44%), Gaps = 31/125 (24%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHK----------IDIPAFDWPIASFP-KYKYPLEEN 99
I++F GAFHGRT G LS T SK + + I +P +P Y+ P
Sbjct: 144 IIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVP--------YPNPYRNPWGIE 195
Query: 100 ERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG-----DNHGSNYFFQQLQ 154
E L +ED + K VA I+VEPIQ EGG N FF++L+
Sbjct: 196 NPEECG--NAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKN-----FFKELR 248
Query: 155 KIGKK 159
K+ K
Sbjct: 249 KLADK 253
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 60.0 bits (146), Expect = 2e-11
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAE-DEK 109
I+SF G FHGRTLG LS T SK ++ + P Y Y + E+ +
Sbjct: 132 IISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAP-YPYCDRCPKGEDPEVCFLE 190
Query: 110 CLAEVEDLITKYNKKGTP--VAGIVVEPIQSEGG 141
CL ++E L + + TP VA +++EP+ EGG
Sbjct: 191 CLRDLESL---FKHQVTPEEVAAVIIEPVLGEGG 221
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 59.8 bits (146), Expect = 3e-11
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 30/109 (27%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
I++ + +FHGRTL LS T PKY+ PL E D
Sbjct: 130 IITAENSFHGRTLATLSATGQ------------------PKYQEGFEPLVEGFIYVPFND 171
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+E L K A +++EPIQ EGG N + Q L+++
Sbjct: 172 ------IEALKAAITDK---TAAVMLEPIQGEGGVNPADKEYLQALREL 211
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 57.0 bits (138), Expect = 3e-10
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 30/112 (26%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
I++F+ +FHGRT+G LS T PKY+ PL D
Sbjct: 118 IIAFENSFHGRTMGALSATGQ------------------PKYQKGFEPLVPGFSYAPYND 159
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+ L + D A ++VEPIQ EGG N S F + L++I K
Sbjct: 160 IESLKKAID---------DETAAVIVEPIQGEGGVNPASAEFLKALREICKD 202
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 56.8 bits (138), Expect = 3e-10
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 26/107 (24%)
Query: 51 ILSFKGAFHGRTLGCLSTT-HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEK 109
I++F+GAFHGRTL ++ KY + F + F + + E
Sbjct: 123 IITFEGAFHGRTLATIAAGGQEKY-----LEGFGPLVPGFDQVPFGDIE----------- 166
Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
++ IT A I++EPIQ EGG + F + L+++
Sbjct: 167 ---ALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQL 204
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 54.5 bits (132), Expect = 2e-09
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
I++F+ +FHGRTLG LS T K F + F + N E
Sbjct: 132 IIAFENSFHGRTLGALSATGQPKYRK----GFGPLLPGFRHVPF--------NDIEA--- 176
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+E I A ++VEPIQ EGG F + L+++
Sbjct: 177 ---LEAAID------EDTAAVIVEPIQGEGGVIPAPPEFLKALREL 213
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 51.7 bits (125), Expect = 2e-08
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA-FDWPIASFPKYKYPLEENERENKAEDEK 109
L+F+ +HG T G +S H + P F+ P + ++ E +
Sbjct: 126 FLAFRNGYHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDPDDCE-----AE 180
Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
CLA +E L+ ++ + +A +VEP+ Q GG
Sbjct: 181 CLAALEALLEEHADE---IAAFIVEPLVQGAGG 210
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 47.8 bits (114), Expect = 4e-07
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 29/112 (25%)
Query: 51 ILSFKGAFHGRTLGCLSTTH---SKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAED 107
I+ G F GRT+G S + +P F+ Y N+ E
Sbjct: 125 IIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFE-----LVDY------NDVE----- 168
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+E L+ N VA +VEPIQ E G + + +Q+ ++ KK
Sbjct: 169 -----ALEKLLQDPN-----VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKK 210
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 47.4 bits (113), Expect = 6e-07
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
I++F +FHGRTL +S + I P + FPK + N+
Sbjct: 127 IITFDHSFHGRTLATMSASGKPGWDTIFAPQ----VPGFPKAEL----ND---------- 168
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+A VE LIT VA +++EP+Q EGG + F QQL+ + K+
Sbjct: 169 IASVEKLIT-----DKTVA-VMLEPVQGEGGVIPATREFMQQLRALTKQ 211
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 46.9 bits (112), Expect = 9e-07
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHK-IDIPAFDWPIASFPKYKYPLEENERENKAEDE 108
+++SF AFHG TLG LS T +++ + +P + ++ P Y + +
Sbjct: 127 NVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSN--VSRMPYDGYLGGDVDT------- 177
Query: 109 KCLAEVEDLITKYNKKGTPV-AGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+A E L+ + G + A +++E +Q EGG N S+ + Q+L+K+ ++
Sbjct: 178 --IAYFEKLLED-SSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRR 226
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 45.3 bits (107), Expect = 3e-06
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+++F FHGRT ++ T +K F + P YP + + + +
Sbjct: 123 VVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAP-LPYPYRDGLLDKQLSTDGE 181
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
LA + + VA +V+EP+Q EGG + F L ++
Sbjct: 182 LAAARAIF-VIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE 229
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 45.2 bits (107), Expect = 4e-06
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+++F GAFHGRTL ++ T +K+ F S YP NE + +E
Sbjct: 130 VIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFP---GSIFHALYP---NELHGVSVEE-A 182
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
L+ VE L K + VA I++EPIQ EGG N F L+ +
Sbjct: 183 LSSVERLF-KADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTL 227
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 43.4 bits (102), Expect = 1e-05
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEK 109
+++SF G FHG T+G L+ T + + + P F Y +
Sbjct: 130 NVISFSGGFHGMTIGALAVTGNLF--AKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN 187
Query: 110 CLAE-VEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
E E+ I A +++E IQ EGG + + Q+++++ +K
Sbjct: 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK 238
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 42.4 bits (100), Expect = 3e-05
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIP-AFDWPIASFPKYKYPLEENERENKAEDE 108
++ K A+HG T+G +S H++ F+ +P Y Y + + +
Sbjct: 150 RFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYP-YTYRSPYGNDKAEIVKK 208
Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGG 141
L E+E+L+ + K +A I+VEP +Q GG
Sbjct: 209 -HLEELEELLKE---KHEEIAAIIVEPLVQGAGG 238
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 42.1 bits (100), Expect = 4e-05
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHK-IDIPAFDWPIASF-PKYKYPLEENERENKAED 107
+I++F FHG TLG L+ T + + + +P + + P Y + +
Sbjct: 131 NIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNN---VTRMPYDGYFGGDVD------- 180
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
LA +E L+ + A ++VE +Q EGG N S + Q+L K+ +K
Sbjct: 181 --TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRK 230
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 41.9 bits (99), Expect = 4e-05
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 25/93 (26%)
Query: 51 ILSFKGAFHGRTLGC--LSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE 108
I+S KG FHGRTLG +ST + F + F K Y
Sbjct: 131 IVSAKGNFHGRTLGAISMSTDPDSRTN------FGPYVPGFKKIPY-------------- 170
Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
+E L G V +VEPIQ E G
Sbjct: 171 ---NNLEALEEALEDHGPNVCAFIVEPIQGEAG 200
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 41.8 bits (99), Expect = 5e-05
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 36/145 (24%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS + E A K + RG + Q +S + +HG TL
Sbjct: 114 GSEAVETALK--MALQYWRARG-------QPQRKK------------FISRRNGYHGDTL 152
Query: 64 GCLSTTHSKYIHKIDIPAFDWPI-----ASFPK-YKYPLEENERENKAEDEKCLAEVEDL 117
G +S + +D + P Y+ E AE E+E L
Sbjct: 153 GAMSVGGPVALRH---AFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE---AADELEAL 206
Query: 118 ITKYNKKGTPVAGIVVEPI-QSEGG 141
I ++ T +A +VEP+ GG
Sbjct: 207 ILEHG-PET-IAAFIVEPVVGGAGG 229
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 41.9 bits (99), Expect = 5e-05
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 34/114 (29%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASF----PKYKY-PLEENERENKA 105
I++F+ +FHGRT G +S T + I F P + + P + + +
Sbjct: 115 IVTFEQSFHGRTFGTMSATGQEKIK-----------EGFGPLLPGFTHVPFNDIKALKEV 163
Query: 106 EDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+E+ VA +++E +Q EGG F Q++Q + KK
Sbjct: 164 MNEE------------------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKK 199
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 40.2 bits (94), Expect = 2e-04
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 51 ILSFKGAFHGRTLGCLSTT-----HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKA 105
+++F GA+HGRT L+ T +S + + + A +P +
Sbjct: 131 VIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYR---ALYP--------CPLHGVS 179
Query: 106 EDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
ED+ +A +E I K + +A I++EP+Q EGG S F Q+L+ +
Sbjct: 180 EDD-AIASIER-IFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRAL 228
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 39.9 bits (94), Expect = 2e-04
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 32/95 (33%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPK----YKYPLEENERENKAE 106
I++ +G FHGRT+G L+ T PA P P Y
Sbjct: 131 IVAAEGGFHGRTMGALALTGQ--------PAKRAPFEPLPGGVEHVPYG----------- 171
Query: 107 DEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
D + + + A + +EPIQ E G
Sbjct: 172 D---VDALAAAVD------DDTAAVFLEPIQGEAG 197
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 40.0 bits (93), Expect = 2e-04
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASF-PKYKYPLEENERENKAEDE 108
+ ++ GAFHG++LG LS T PAF P P + + +
Sbjct: 165 TFIAASGAFHGKSLGALSATAK--------PAFRKPFMPLLPGFHHVAFGDIEAMLKALN 216
Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
+C K G VA I++EPIQ EGG
Sbjct: 217 EC-----------KKTGDDVAAIILEPIQGEGG 238
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 39.7 bits (93), Expect = 2e-04
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 27/107 (25%)
Query: 52 LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCL 111
+SF +FHGRTLG L+ T + +Y+ P E
Sbjct: 115 VSFSNSFHGRTLGALALTSKE------------------QYRTPFEPLMPGVT------F 150
Query: 112 AEVEDL--ITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
E +L K +KG A + VEP+Q EGG + F Q L+ +
Sbjct: 151 VEYGNLEAARKLIQKGK-TAAVFVEPVQGEGGIYPATKEFLQGLRAL 196
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 39.8 bits (94), Expect = 3e-04
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA-FDWPIASFPKYKYPLEENERENKAEDEK 109
LS +G +HG T+G +S +H + P F+ A FP Y ++
Sbjct: 137 FLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGY------------EQA 184
Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGG 141
L +E L+ K+ + +A +VEP +Q GG
Sbjct: 185 TLDALEALLEKHAGE---IAAFIVEPLVQGAGG 214
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 39.6 bits (92), Expect = 3e-04
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+++F G FHGRT ++ T +KI F + P YP + + +
Sbjct: 130 VIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVP---YPSDLH----GISTQDS 182
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDN 143
L +E L K + + VA I+ EP+Q EGG N
Sbjct: 183 LDAIERLF-KSDIEAKQVAAIIFEPVQGEGGFN 214
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 39.4 bits (92), Expect = 4e-04
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
I+SF FHGRTL ++ T +K F + P +P E E E++
Sbjct: 144 IISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAP---FPYEYRRPEGLTEEQYD 200
Query: 111 LAEVEDLITKYNKKGTP--VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+E+ + + P +A +V+EP+Q EGG S F Q+++ I +
Sbjct: 201 DFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSE 251
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 39.2 bits (92), Expect = 4e-04
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 50 SILSFKGAFHGRTLGCLSTTHS----KYIHKI--DIPAFDWPIASFPKYKYPL----EEN 99
++LSF+G +HG + G LS + K + + + +P Y+ P E
Sbjct: 155 TVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYD----YRCPFGLGGEAG 210
Query: 100 ERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
R N E L + E + A +++E +Q EGG
Sbjct: 211 VRANLHYLENLLDDPESGV-------VLPAAVILEVVQGEGG 245
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 38.8 bits (90), Expect = 5e-04
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 29/94 (30%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
I++F+G+FHGRTL ++ T PKY+ PL R D
Sbjct: 134 IVTFRGSFHGRTLAAVTATAQ------------------PKYQEGYEPLPGGFRYVDFND 175
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
+ L G VA +++EPIQ EGG
Sbjct: 176 VEALEAA--------MAGGDVAAVMLEPIQGEGG 201
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 38.2 bits (89), Expect = 9e-04
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+++F G FHGRT +S T +K+ A + P +P+E + E+
Sbjct: 130 VIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVP---FPVELH----GVSVEQS 182
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
LA ++ L K + VA I++EP+Q EGG F + L+++
Sbjct: 183 LAALDKLF-KADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALREL 227
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 37.8 bits (88), Expect = 0.001
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 56 GAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVE 115
GAFHG++LG LS T ++F K PL R + + +
Sbjct: 178 GAFHGKSLGALSATAK---------------STFRKPFMPLLPGFRHVPFGN---IEAMR 219
Query: 116 DLITKYNKKGTPVAGIVVEPIQSEGG 141
+++ K G VA +++EPIQ EGG
Sbjct: 220 TALSECKKTGDDVAAVILEPIQGEGG 245
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 37.7 bits (88), Expect = 0.001
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAED--- 107
++ F A+HGRT ++ T +K F + Y+ P+ R+ K
Sbjct: 146 VVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEV-----YRAPMSYPYRDPKGLATDG 200
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
E+ A +I K +A +++EPIQ EGG
Sbjct: 201 EEAAARAITVIEKQ-VGADNLAAVIIEPIQGEGG 233
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 36.4 bits (84), Expect = 0.004
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 28/93 (30%)
Query: 51 ILSFKGAFHGRTLGCLSTT-HSKYIHKIDIPAFDWPIASFPKYKY-PLEENERENKAEDE 108
I++ AFHGRT+G LS T KY + P+ P +K+ P + E +A
Sbjct: 110 IIAMTNAFHGRTMGALSATWKPKYREDFE------PLV--PGFKHIPFNDVEAAKEA--- 158
Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
ITK A ++ EPIQ EGG
Sbjct: 159 ---------ITK------ETAAVIFEPIQGEGG 176
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 36.1 bits (83), Expect = 0.004
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKID----IPAFDWPIASFPK-YKYPLEENERENKA 105
IL+F GA+HG+TLG S + K +P W +P Y+ P N E
Sbjct: 142 ILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVW--IPYPNPYRNPWGINGYEEPD 199
Query: 106 E-DEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
E + L +E+ + + VA + EPIQ + G FF++L+K+
Sbjct: 200 ELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKL 251
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 35.0 bits (81), Expect = 0.009
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS +NE A+K I Q + G K +S A+HG ++
Sbjct: 114 GSEANETAFK---IARQYHAQKGEPHRYK------------------FISRYRAYHGNSM 152
Query: 64 GCLSTT---HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
G L+ T KY ++ P F + P Y + E E+ D +C+ E++ ++T
Sbjct: 153 GALAATGQAQRKYKYEPLAPGF---LHVPPPDCYRMPGIESED-IYDLECVKEIDRVMT- 207
Query: 121 YNKKGTPVAGIVVEPIQSEGG 141
+ T +A +++EPI + GG
Sbjct: 208 WELSET-IAAVIMEPIITGGG 227
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 35.1 bits (81), Expect = 0.010
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTT-----HSKYIHKIDIPAFDWPIASFPKYKYPLEENERE--N 103
I+SF A+HG T G LS + + + +P F P + R
Sbjct: 132 IISFTNAYHGSTYGSLSMSGISLNMRRKYGPL-LPGF---------VHIPFPDKYRGMYE 181
Query: 104 KAED---EKCLAEVEDLITKYNKKGTP---VAGIVVEPIQSEGGDNHGSNYFFQQLQKIG 157
+ + E+ LA ++++ KY P VA IV+E IQ +GG +F+ L K
Sbjct: 182 EPDANFVEEYLAPLKEMFEKY----LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFC 237
Query: 158 K 158
+
Sbjct: 238 R 238
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 34.7 bits (80), Expect = 0.014
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 30/109 (27%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKY---PLEENERENKAED 107
I++FK AFHGRTL F PKY PL + R D
Sbjct: 131 IVAFKNAFHGRTL------------------FTVSAGGQPKYSQDFAPLPPDIRHAAYND 172
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
L LI ++VEPIQ EGG F Q L+++
Sbjct: 173 ---LNSASALIDDQT------CAVIVEPIQGEGGVIPADKAFLQGLREL 212
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 34.8 bits (80), Expect = 0.015
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 27/94 (28%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFD--WP-IASFPKYKYPLEENERENKAED 107
I+S G FHGRTL +S + D A P + K +
Sbjct: 169 IVSCCGCFHGRTLAAISMS-------CDNEATRGFGPLLPGHLKVDF------------- 208
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
+++ L + + G +A + EPIQ E G
Sbjct: 209 ----GDLDALEKIFEEDGDRIAAFLFEPIQGEAG 238
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 34.3 bits (79), Expect = 0.015
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 30/115 (26%)
Query: 45 GAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKY---PLEENER 101
GA I++FK +FHGRTL F + PKY PL +
Sbjct: 121 GADKSEIVAFKNSFHGRTL------------------FTVSVGGQPKYSQGFAPLPGGIK 162
Query: 102 ENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
D LA + LI+ ++VEPIQ EGG F + L+++
Sbjct: 163 HAPYND---LAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLREL 208
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 34.6 bits (80), Expect = 0.015
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 43/148 (29%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNL-SILSFKGAFHGRT 62
GS +N+ K +WY N A G P I+S + +HG T
Sbjct: 118 GSEANDTVVK--LVWY--------------------YNNALGRPEKKKIISRQRGYHGVT 155
Query: 63 LGCLSTTHSKYIHKIDIPAFDWPIASF-----PKYKYPLEENERENKAED--EKCLAEVE 115
+ S T H+ +FD P+ P Y E E E + E+E
Sbjct: 156 IASASLTGLPNNHR----SFDLPLDRILHTGCPHYYRFGLPGESE---EAFATRLANELE 208
Query: 116 DLITKYNKKGTP--VAGIVVEPIQSEGG 141
LI +G P +A + EP+ GG
Sbjct: 209 ALIL---AEG-PDTIAAFIGEPVMGAGG 232
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 33.8 bits (78), Expect = 0.027
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 36/108 (33%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIA-------SFPK---YKYPLEENE 100
++S A+HG T G L+ T +PAF P P Y+ P
Sbjct: 147 VISRAIAYHGTTQGALAIT--------GLPAFKAPFEPLVPGGFRVPNTNFYRAPEL--- 195
Query: 101 RENKAEDEK-----CLAEVEDLITKYNKKGTP--VAGIVVEPIQSEGG 141
+D + +E+ I + P VA + +EP+Q+ GG
Sbjct: 196 ----GDDPEAFGRWAADRIEEAI----EFEGPDTVAAVFLEPVQNAGG 235
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 33.8 bits (78), Expect = 0.032
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 57 AFHGRTLGCLSTTHSKYIHKIDIPAFDW-PIASFP-----KYKYPLEENERENKAEDEKC 110
A+HG T + + K+ K D +A P ++P E+ R +
Sbjct: 715 AYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGR-------RF 767
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
V + I KG A + E I S G
Sbjct: 768 AESVAEQIAAMAAKGRGPAFFIAESIPSVAG 798
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 32.7 bits (75), Expect = 0.038
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 40 INQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEEN 99
+ GA ++L+ G + + S+Y ++ Y +
Sbjct: 23 VPSGTGANEAALLALLGP-GDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLD- 80
Query: 100 ERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+A +E+ K VA IV+ P + GG ++++KI K+
Sbjct: 81 -----------VAILEE-----LKAKPNVALIVITPNTTSGGVLVPL----KEIRKIAKE 120
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 32.5 bits (74), Expect = 0.074
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 42 QAPGAPNLSILSFK-GAFHGRTLGCLSTTHSKYIHKI-----DIPAFDWPIASFPKYKYP 95
Q G P I+ + +HG TL + K++H++ D+ D P Y Y
Sbjct: 140 QVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEP------YWYA 193
Query: 96 LEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQK 155
E + ++E+ I + + VAG V EP Q GG ++ ++Q+
Sbjct: 194 -NGGELTPAEFGRRAALQLEEKILELGAEN--VAGFVAEPFQGAGGMIFPPESYWPEIQR 250
Query: 156 I 156
I
Sbjct: 251 I 251
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 32.4 bits (74), Expect = 0.092
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 51 ILSFKGAFHGRTLGCLSTT-----HSKYIHKIDIPAFDWPIASFPK-YKYPLEENERENK 104
ILS ++HG T+G LS + +++ ++ D+P S P Y+ P+++ +
Sbjct: 126 ILSRWMSYHGITMGALSMSGHPLRRQRFVSLLE----DYPTISAPYCYRCPVQKVYPTCQ 181
Query: 105 AEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI 136
C E+E I + + +A + EPI
Sbjct: 182 ---LACATELETAIERIGAEH--IAAFIAEPI 208
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 32.0 bits (73), Expect = 0.11
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 50 SILSFKGAFHGRTLGCLSTT---HSKYIHKIDIPAFDWPIASFP-KYKYPLE-ENERENK 104
+++SF G +HG T G L+ T K +P + +P +Y+ PL E K
Sbjct: 149 NVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQF--MPYPHEYRCPLGIGGEAGVK 206
Query: 105 AED---EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
A E + +VE + K P A +++E IQ EGG N + Q+++++ +K
Sbjct: 207 ALTYYFENFIEDVESGVRK------P-AAVILEAIQGEGGVNPAPVEWLQKIREVTQK 257
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 31.7 bits (72), Expect = 0.12
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 50 SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIAS----FPKYKY-PLEENEREN- 103
ILS+ +++G T G +S T D+P+ + Y P + R
Sbjct: 129 KILSYLRSYYGSTYGAMSLT-----------GLDFPVRALVGELSDVHYIPYPDCYRCPF 177
Query: 104 KAEDEKCLAE-VEDLITKYNKK--GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
E C E VE + K+ + VA + EPIQ + G +F++L+KI
Sbjct: 178 GKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKI 233
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 31.3 bits (71), Expect = 0.17
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
I++F+ +FHGRT G +S T I P + Y + +
Sbjct: 113 IITFQNSFHGRTFGSMSATGQDKIKDGFGDG-------VPHFSYAIFND----------- 154
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQL 153
L V+ L+ K A +++E +Q E G F + L
Sbjct: 155 LNSVKALVNK------NTAAVMLELVQGESGVLPADKDFVKAL 191
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 31.2 bits (71), Expect = 0.21
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 24/102 (23%)
Query: 51 ILSFKGAFHGRTLGCLSTT-----HSKY------IHKIDIPAFDWPIASFPKYKYPLEEN 99
+S K +HG G S Y ++ P W Y+ P E
Sbjct: 139 FISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETP---WL------YRNPFTEQ 189
Query: 100 ERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
+ E A C +E I + T +A + EP+Q GG
Sbjct: 190 DPEELAR--ICARLLEREI-AFQGPDT-IAAFIAEPVQGAGG 227
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 29.5 bits (67), Expect = 0.65
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 51 ILSFKGAFHGRTL 63
I++F +FHGRTL
Sbjct: 132 IIAFHNSFHGRTL 144
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 29.3 bits (66), Expect = 0.82
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 33 EEQESSMINQAPGAPNLSILSFKGAFHGRTLG 64
+ S + L +L+ G++HG TLG
Sbjct: 457 FLENSGNEKRGGDLIELKVLALDGSYHGDTLG 488
>gnl|CDD|214920 smart00933, NurA, NurA nuclease. This family includes NurA a
nuclease exhibiting both single-stranded endonuclease
activity and 5'-3' exonuclease activity on
single-stranded and double-stranded DNA from the
hyperthermophilic archaeon Sulfolobus acidocaldarius.
Length = 262
Score = 29.0 bits (65), Expect = 0.84
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 92 YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIV 132
K L + + + L +E L+ K+G P+ G+V
Sbjct: 91 TKSLLCLDSLVEEDLLREYLELLERLLEAAEKRGVPLVGVV 131
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 28.1 bits (63), Expect = 2.0
Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 52/153 (33%)
Query: 3 CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT 62
GS + ++A + F+ Y RG + ++ I++ A+HG T
Sbjct: 120 GGSTAVDSALR--FVHYYFNVRG------RPAKKH-------------IITRGDAYHGST 158
Query: 63 LGCLSTT-----------HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC- 110
S T S +H + P Y+ P +E C
Sbjct: 159 YLTASLTGKAADRTEFDYASDLVHHLSSPNP---------YRRP------AGMSEAAFCD 203
Query: 111 --LAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
+ E ED I +A + EPI GG
Sbjct: 204 FLVDEFEDKILSLGADN--IAAFIAEPILGSGG 234
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 27.9 bits (62), Expect = 2.2
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
Query: 51 ILSFKGAFHGRTLGCLST------THSKYIHKIDIPAFDWPIASFPKYKYPLEENERENK 104
+L+++ +HG T +S HS + + F A P P+ + +
Sbjct: 135 LLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIF----APAP----PVRGSSPQ-- 184
Query: 105 AEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
E + L +E LI VA I++EPI Q GG
Sbjct: 185 -EISEYLRSLELLID------ETVAAIIIEPIVQGAGG 215
>gnl|CDD|191937 pfam08069, Ribosomal_S13_N, Ribosomal S13/S15 N-terminal domain.
This domain is found at the N-terminus of ribosomal S13
and S15 proteins. This domain is also identified as
NUC021.
Length = 60
Score = 25.6 bits (57), Expect = 3.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 113 EVEDLITKYNKKGTPVAGI 131
EVE+LI K KKG + I
Sbjct: 32 EVEELIVKLAKKGLTPSQI 50
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 27.7 bits (62), Expect = 3.2
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 42 QAPGAPNLSILSFKGAFHGRTLGCLSTT------HSKYIHKIDIPA--FDWPIASFPKYK 93
QA G P L+ + +HG T G +S HS Y K +P F A P+ +
Sbjct: 128 QAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLY--KGYLPENLF----APAPQSR 181
Query: 94 YPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
+ E +ER+ +A L+ + + +A +++EPI Q GG
Sbjct: 182 FDGEWDERD--------IAPFARLMAAHRHE---IAAVILEPIVQGAGG 219
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose
galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
compounds.
Length = 865
Score = 27.9 bits (62), Expect = 3.3
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 21 NKQRGGASGFTKEEQESSMIN---QAPGAPNLSILSFK 55
N +GG GFTKE + N + G LSI FK
Sbjct: 71 NSHKGGFLGFTKESPSDRLTNSLGKFEGRDFLSIFRFK 108
>gnl|CDD|117609 pfam09043, Lys-AminoMut_A, D-Lysine 5,6-aminomutase alpha subunit.
Members of his family are involved in the 1,2
rearrangement of the terminal amino group of DL-lysine
and of L-beta-lysine, using adenosylcobalamin (AdoCbl)
and pyridoxal-5'-phosphate as cofactors. The structure
is predominantly a PLP-binding TIM barrel domain, with
several additional alpha-helices and beta-strands at the
N and C termini. These helices and strands form an
intertwined accessory clamp structure that wraps around
the sides of the TIM barrel and extends up toward the
Ado ligand of the Cbl cofactor, providing most of the
interactions observed between the protein and the Ado
ligand of the Cbl, suggesting that its role is mainly in
stabilising AdoCbl in the precatalytic resting state.
Length = 509
Score = 27.0 bits (60), Expect = 4.9
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 122 NKKGTPVAGIVVEPIQSEGGDNHGSNYF 149
++ G P+ +VV+ ++ GG G+ Y+
Sbjct: 48 DEDGVPLPNVVVDHLKDNGGLGLGAAYW 75
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 26.6 bits (59), Expect = 7.2
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 30/112 (26%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKY---PLEENERENKAED 107
I++ +G FHGRT+ +S ++S +YK P+ ++ D
Sbjct: 134 IIACEGNFHGRTMAAVS------------------LSSEEEYKRGFGPMLPGIKKIPYGD 175
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
+ L IT A +VEPIQ E G N F + +++ K+
Sbjct: 176 LEALKAA---ITPNT------AAFLVEPIQGEAGINIPPEGFLKAARELCKE 218
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.402
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,857,751
Number of extensions: 682434
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 84
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)