RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4805
(159 letters)
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 242 bits (619), Expect = 1e-79
Identities = 109/159 (68%), Positives = 132/159 (83%), Gaps = 1/159 (0%)
Query: 1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
M CGSCSNENA+K IF+WY++K+RG + F+KEE E+ MINQAPG P+ SILSF GAFHG
Sbjct: 133 MACGSCSNENAFKTIFMWYRSKERGQS-AFSKEELETCMINQAPGCPDYSILSFMGAFHG 191
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPLEE +EN+ E+ +CL EVEDLI K
Sbjct: 192 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 251
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
Y KK VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 252 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 290
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 187 bits (478), Expect = 9e-59
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
+ G+ + ENA K F W + + A +L +GAFHG
Sbjct: 125 VEGGALAVENALKAAFDWKSRHNQA---------------HGIDPALGTQVLHLRGAFHG 169
Query: 61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
R+ LS T++K P FDWP P + L+E + L +
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAE--ALRQARAAFET 227
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+A V EPIQ EGGD H FF ++++
Sbjct: 228 RPH---DIACFVAEPIQGEGGDRHFRPEFFAAMREL 260
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 79.1 bits (196), Expect = 3e-18
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
++F GA+HGRT L+ T + + + Y PL + ++
Sbjct: 131 TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRAL-YPCPL------HGISEDDA 183
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+A + + +A IV+EP+Q EGG S F Q+L+ +
Sbjct: 184 IASIHRIFKNDAAPED-IAAIVIEPVQGEGGFYASSPAFMQRLRAL 228
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 78.0 bits (193), Expect = 9e-18
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPI--ASFPKYKYPLEENERENKAEDE 108
+++F A+HGRT ++ T +K F I A Y + E +E + E
Sbjct: 151 VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLS-YPFRDAEFGKELATDGE 209
Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+I K +A +V+EPIQ EGG ++ F L
Sbjct: 210 LAAKRAITVIDKQI-GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDW 256
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 76.5 bits (189), Expect = 3e-17
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKID----IPAFDWPIASFP-KYKYPLEENERENKA 105
I++F G FHGRT G +S T SK + + +P +P Y+ P N EN +
Sbjct: 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIH--VPYPNPYRNPWHINGYENPS 189
Query: 106 ED-EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
E + + +ED I VAGI EPIQ EGG FF +LQK+
Sbjct: 190 ELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKL 241
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 72.2 bits (178), Expect = 9e-16
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+++F A+HGRT ++ T +K F + P YPL E E+
Sbjct: 154 VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMP-ASYPL---RDEPGLTGEEA 209
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
I + +A I++EPIQ EGG + F L
Sbjct: 210 ARRAISRIETQIGAQS-LAAIIIEPIQGEGGFIVPAPGFLATLTAW 254
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 71.0 bits (175), Expect = 2e-15
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFP-KYKYPLEENERENKAEDEK 109
I+ F ++HG T S T+S + A P Y+ E N +
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAY---DYLA 187
Query: 110 CLAEVEDLITKYNKKGTP--VAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
L DLI + + +A + EPI S GG + + L++
Sbjct: 188 ELDYAFDLI----DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK 232
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 67.2 bits (165), Expect = 4e-14
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+++F GA+HG T+G ++ + + A YP N +
Sbjct: 133 VIAFAGAYHGCTVGSMAFSGHS------VQADAAKADGLILLPYPDPYRPYRNDPTGDAI 186
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
L + + + + +EPIQS+GG + F ++ I
Sbjct: 187 LTLLTEKLAAVPAGS--IGAAFIEPIQSDGGLIVPPDGFLRKFADI 230
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 61.4 bits (150), Expect = 6e-12
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
ILS +FHGRTLG L+ T K F+ + F +++ N
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQK----PFEPLVPGFEYFEF----NN---------- 172
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ ++ +++ V + +EPIQ E G + F ++ +K+
Sbjct: 173 VEDLRRKMSED------VCAVFLEPIQGESGIVPATKEFLEEARKL 212
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 61.0 bits (149), Expect = 6e-12
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 30/109 (27%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
++FK +FHGRTLG LS T + KY+ PL + K D
Sbjct: 127 FIAFKHSFHGRTLGALSLTAN------------------EKYQKPFKPLISGVKFAKYND 168
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
++ VE L+ + I++E +Q EGG N + F++ L+K+
Sbjct: 169 ---ISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKL 208
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 61.0 bits (149), Expect = 6e-12
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 24/106 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
I++F AFHGR+L +S F A + N+
Sbjct: 149 IIAFHNAFHGRSLFTVSVGGQPKYSD----GFGPKPADIIHVPF----ND---------- 190
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
L V+ ++ + +VVEPIQ EGG + F + L+ +
Sbjct: 191 LHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKGLRDL 230
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 60.6 bits (148), Expect = 9e-12
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
+SF+ +FHGRT G LS T HK F+ + F K N+
Sbjct: 120 FISFENSFHGRTYGSLSATGQPKFHK----GFEPLVPGFSYAKL----ND---------- 161
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ V L+ + AGI++E IQ EGG N S F +LQ+I
Sbjct: 162 IDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEI 201
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 55.6 bits (135), Expect = 5e-10
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 30/109 (27%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
++ F GRT+G LS T PKY+ PL E D
Sbjct: 133 FVAAMRGFSGRTMGSLSVTWE------------------PKYREPFLPLVEPVEFIPYND 174
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+ ++ + + A +++EP+Q EGG + F + ++I
Sbjct: 175 ---VEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREI 214
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 54.9 bits (133), Expect = 1e-09
Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 36/144 (25%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS +NE A+K Q+G K +S +HG T+
Sbjct: 116 GSEANETAFK--IARQYYAQKGEPHR-YK------------------FMSRYRGYHGNTM 154
Query: 64 GCLSTTHSKYIHKIDIPAFDWPIASFPK------YKYPLEENERENKAEDEKCLAEVEDL 117
++ T ++ + F Y+ P E E E C+ EV+ +
Sbjct: 155 ATMAATGQAQRRYQ----YEPFASGFLHVTPPDCYRMPGIERENIYDVE---CVKEVDRV 207
Query: 118 ITKYNKKGTPVAGIVVEPIQSEGG 141
+T + +A ++EPI + GG
Sbjct: 208 MTWELSET--IAAFIMEPIITGGG 229
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 50.3 bits (121), Expect = 3e-08
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 23/106 (21%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
I+ K F GRTLGC+S + +K F F K Y + E
Sbjct: 159 IVVCKNNFSGRTLGCISASTTKKCTS----NFGPFAPQFSKVPY--------DDLEA--- 203
Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
+E+ + N V +VEPIQ E G S+ + Q + I
Sbjct: 204 ---LEEELKDPN-----VCAFIVEPIQGEAGVIVPSDNYLQGVYDI 241
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 49.6 bits (119), Expect = 6e-08
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 29/109 (26%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKY---PLEENERENKAED 107
I+ G F GRTL +S++ P P D
Sbjct: 170 IVFAAGNFWGRTLSAISSSTD------------------PTSYDGFGPFMPGFDIIPYND 211
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
L +E + N VA +VEPIQ E G + ++++
Sbjct: 212 ---LPALERALQDPN-----VAAFMVEPIQGEAGVVVPDPGYLMGVREL 252
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 49.1 bits (118), Expect = 8e-08
Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 35/144 (24%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS +NE K IWY N G K I+S +HG +
Sbjct: 121 GSDANETNIK--LIWYYNNVLGRPEK-KK------------------IISRWRGYHGSGV 159
Query: 64 GCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLE-ENERENKAEDE---KCLAEVEDLIT 119
S T H AFD P A + P + +E++ C ++E++I
Sbjct: 160 MTGSLTGLDLFHN----AFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMIL 215
Query: 120 KYNKKGTP--VAGIVVEPIQSEGG 141
P +A + EPI GG
Sbjct: 216 AEG----PETIAAFIGEPILGTGG 235
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 49.1 bits (118), Expect = 1e-07
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 30/109 (27%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKY---PLEENERENKAED 107
I+ + FHGRT+G +S + + +YK P+ D
Sbjct: 130 IIVCEDNFHGRTMGAVSMSSN------------------EEYKRGFGPMLPGIIVIPYGD 171
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
L ++ IT A ++EPIQ E G N F ++ ++
Sbjct: 172 ---LEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKEALEV 211
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 47.6 bits (114), Expect = 3e-07
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 51 ILSFKGAFHGRTLGCLSTTHSKYIHKI-DIPAFDWPIASFPKYKYPLEENERENKAEDEK 109
++ K +HG T+G +S + H + F+ A P + E ++
Sbjct: 139 FIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDE---CRDQ 195
Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGG 141
CL E+ L+ +++++ +A + +E +Q G
Sbjct: 196 CLRELAQLLEEHHEE---IAALSIESMVQGASG 225
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 47.2 bits (113), Expect = 5e-07
Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 34/143 (23%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS S + + + +G ++ +HG T+
Sbjct: 120 GSESVDTMIR--MVRRYWDVQGKPEK-KT------------------LIGRWNGYHGSTI 158
Query: 64 GCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE---KCLAEVEDLITK 120
G S KY+H+ D PI + P ++ DE +E+ I +
Sbjct: 159 GGASLGGMKYMHE----QGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILE 214
Query: 121 YNKKGTP--VAGIVVEPIQSEGG 141
VA V EPIQ GG
Sbjct: 215 IG----ADKVAAFVGEPIQGAGG 233
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 46.4 bits (111), Expect = 7e-07
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 31/143 (21%)
Query: 3 CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT 62
GS A K + + +G A+ ++ +HG
Sbjct: 118 SGSECALTAVK--MVRAYWRLKGQATKTK-------------------MIGRARGYHGVN 156
Query: 63 LGCLSTTHSKYIHKIDIPAFDWPIASFPK----YKYPLEENERENKAEDEKCLAEVEDLI 118
+ S K F P+ + K E+ LI
Sbjct: 157 IAGTSLGGVNGNRK----LFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212
Query: 119 TKYNKKGTPVAGIVVEPIQSEGG 141
++ + +A + VEP+ G
Sbjct: 213 ELHD--ASNIAAVFVEPLAGSAG 233
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 45.7 bits (109), Expect = 1e-06
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 34/143 (23%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS +N+ K +W+ + G K IL+ A+HG T
Sbjct: 131 GSEANDTMVK--MLWFLHAAEGKPQK-RK------------------ILTRWNAYHGVTA 169
Query: 64 GCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE---KCLAEVEDLITK 120
S T Y +P + + P + + E + E++ + E+E+ I +
Sbjct: 170 VSASMTGKPYNSVFGLPLPGFVHLTCP-HYW---RYGEEGETEEQFVARLARELEETIQR 225
Query: 121 YNKKGTP--VAGIVVEPIQSEGG 141
+AG EP+ GG
Sbjct: 226 EG----ADTIAGFFAEPVMGAGG 244
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 45.7 bits (109), Expect = 2e-06
Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 35/144 (24%)
Query: 3 CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT 62
GS + ++A + F + N G I+ +HG T
Sbjct: 122 GGSTAVDSALR--FSEFYNNVLGRPQKKR-------------------IIVRYDGYHGST 160
Query: 63 LGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE---KCLAEVEDLIT 119
+ T FD P + N++++ + E ED I
Sbjct: 161 ALTAACTGRTGNWP----NFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIE 215
Query: 120 KYNKKGTP--VAGIVVEPIQSEGG 141
P +A + EPI + GG
Sbjct: 216 SLG----PDTIAAFLAEPILASGG 235
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 44.4 bits (106), Expect = 4e-06
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 34/113 (30%)
Query: 42 QAPGAPNLSILSFKGAFHGRTLGCLSTT------HSKY------IHKIDIPAFDWPIASF 89
QA G L+F+ +HG T G +S HS + P
Sbjct: 128 QAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAP--------- 178
Query: 90 PKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
R + DE+ + L+ + + +A +++EPI Q GG
Sbjct: 179 ---------QSRMDGEWDERDMVGFARLMAAHRHE---IAAVIIEPIVQGAGG 219
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 43.7 bits (104), Expect = 6e-06
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 26/98 (26%)
Query: 51 ILSFKGAFHGRTLGCLSTT------HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENK 104
+++++G +HG T +S HS + + A Y
Sbjct: 170 LMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVL----AAQVFAPQVPRDY---------- 215
Query: 105 AEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
D A E + ++ + +A +VVEP+ Q GG
Sbjct: 216 --DPAYSAAFEAQLAQHAGE---LAAVVVEPVVQGAGG 248
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 43.0 bits (102), Expect = 1e-05
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 31/142 (21%)
Query: 3 CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT 62
GS +N+ + + + +G T I+S K A+HG T
Sbjct: 124 GGSEANDTNIR--MVRTYWQNKGQPEK-TV------------------IISRKNAYHGST 162
Query: 63 LGCLSTTHSKYIHKIDIPAFDWPIASFP-KYKYPLEENERENKAEDEKCLAEVEDLITKY 121
+ + +H D + P + + + E E+E+ I +
Sbjct: 163 VASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLA---RARELEEAILEL 219
Query: 122 NKKGTP--VAGIVVEPIQSEGG 141
VA + EP+Q GG
Sbjct: 220 G----ENRVAAFIAEPVQGAGG 237
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 38.4 bits (89), Expect = 6e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 44/165 (26%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS + E A K F + + ++ +++ +G++HG TL
Sbjct: 451 GSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVK------------VIALRGSYHGDTL 498
Query: 64 GCLS---------------------------TTHSKYIHKIDIP---AFDWPIASFPKYK 93
G + S I +P + P +
Sbjct: 499 GAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSR 558
Query: 94 YPLEENERENKAEDEKCLAEVEDLITKY--NKKGTPVAGIVVEPI 136
+ + R+ A + + ++ ++ V +++EP+
Sbjct: 559 DEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPV 603
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 37.2 bits (87), Expect = 0.001
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 36/141 (25%)
Query: 4 GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
GS + E+A K + +RG K +++ ++HG +L
Sbjct: 98 GSEATESAVK--LARQYHVERGEPGR-FK------------------VITRVPSYHGASL 136
Query: 64 GCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNK 123
G L+ + + + P+ + + + N AE + L+ +
Sbjct: 137 GSLAASGMGARRE----LYT-PLMRPEAWPKLPKPDPARNGAE---DAEGLRALLEREG- 187
Query: 124 KGTP--VAGIVVEPIQ-SEGG 141
P VA + EP+ +
Sbjct: 188 ---PETVAAFMAEPVVGASDA 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 66 LSTTHSKYIHKIDIPAFDWPIAS-----FPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
L+ +H H + +P + IAS F K L E A+DE +L+ K
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKI---LPEPTEGFAADDE--PTTPAELVGK 63
Query: 121 Y 121
+
Sbjct: 64 F 64
Score = 31.9 bits (72), Expect = 0.078
Identities = 24/148 (16%), Positives = 41/148 (27%), Gaps = 57/148 (38%)
Query: 29 GFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIAS 88
G+ E S + Q NL + F + Y+ DI A A
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEF---------------ENCYLEGNDIHAL---AAK 107
Query: 89 FPKYKYPLEENERENKAEDEKCLAEVEDLITKY----NKKGTPVAGIVVEPIQSE----- 139
E++ L + ++LI Y P + S
Sbjct: 108 LL--------------QENDTTLVKTKELIKNYITARIMAKRPFD----KKSNSALFRAV 149
Query: 140 -----------GGDNHGSNYFFQQLQKI 156
GG + +Y F++L+ +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDY-FEELRDL 176
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.011
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 6/25 (24%)
Query: 33 EEQ-----ESSMINQAPG-APNLSI 51
E+Q ++S+ A AP L+I
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.023
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 83 DWPIASFPKYKYPLEENERENKAEDEKCLAEVE-DLI 118
+W + +E+N+ N+ D+ + + D+I
Sbjct: 122 EW----NQRQSEQVEKNKINNRIADKAFYQQPDADII 154
Score = 26.3 bits (57), Expect = 5.0
Identities = 5/30 (16%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 96 LEENERENKAE-DEKCLAEVEDLITKYNKK 124
L+ + + E EK ++E+ + +++
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 28.3 bits (64), Expect = 1.1
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVV 133
+ E+ + + + G +VV
Sbjct: 91 TRSNPELRKVFDSFVEGGRLPTALVV 116
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A
{Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Length = 382
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 74 IHKIDIPAFDW-PIASFPKYKYPLEENERENK--AEDEKCLAEVEDLITKYNKKGTPVAG 130
I +I + + P E+ + D + I KY + G
Sbjct: 158 IGEIKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGG 217
Query: 131 IV 132
+V
Sbjct: 218 VV 219
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
channel mechanosensitive, membrane protein; 3.50A
{Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Length = 174
Score = 25.5 bits (55), Expect = 6.5
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 97 EENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEG 140
+ + L E+ DL+ + N G P ++G
Sbjct: 123 KGEVEQPGDTQVVLLTEIRDLLAQTNGDSPGRHGGRGTPSPTDG 166
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Length = 153
Score = 25.3 bits (55), Expect = 8.9
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 113 EVEDLITKYNKKGTPVAGI 131
V DL K KKG + I
Sbjct: 34 TVVDLSVKLAKKGLTPSQI 52
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 25.3 bits (55), Expect = 9.0
Identities = 10/70 (14%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 94 YPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVV-----EPIQSEGGDNHGSNY 148
+ +E + + + E+ + ++L +Y G P +V + + G + G
Sbjct: 85 HMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPE--LVFIDAEGKQLARMGFEPGGGAA 142
Query: 149 FFQQLQKIGK 158
+ +++ K
Sbjct: 143 YVSKVKSALK 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.402
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,322,513
Number of extensions: 123215
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 48
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)